Query 027177
Match_columns 227
No_of_seqs 145 out of 1341
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 3.4E-56 1.2E-60 375.6 23.1 225 3-227 17-241 (331)
2 2h6f_B Protein farnesyltransfe 100.0 6.4E-53 2.2E-57 366.2 20.4 223 3-227 72-300 (437)
3 3q7a_B Farnesyltransferase bet 100.0 4.7E-53 1.6E-57 368.3 19.0 223 3-227 60-326 (520)
4 1n4q_B Geranyltransferase type 100.0 1.2E-52 4E-57 358.4 19.2 221 3-227 19-272 (377)
5 3dra_B Geranylgeranyltransfera 100.0 3.2E-51 1.1E-55 349.0 17.9 224 1-227 1-297 (390)
6 3dss_B Geranylgeranyl transfer 100.0 1.7E-48 5.8E-53 328.7 23.7 224 3-226 65-289 (331)
7 2h6f_B Protein farnesyltransfe 100.0 4.4E-43 1.5E-47 304.5 19.6 222 4-225 121-360 (437)
8 1n4q_B Geranyltransferase type 100.0 9.8E-41 3.3E-45 284.9 21.7 221 3-225 66-319 (377)
9 3dra_B Geranylgeranyltransfera 100.0 9.7E-39 3.3E-43 272.2 19.6 221 4-225 53-347 (390)
10 3q7a_B Farnesyltransferase bet 100.0 2.2E-39 7.4E-44 282.4 15.2 222 4-225 109-408 (520)
11 2sqc_A Squalene-hopene cyclase 100.0 1.5E-28 5.2E-33 223.6 18.9 219 5-227 332-606 (631)
12 1w6k_A Lanosterol synthase; cy 100.0 6.2E-29 2.1E-33 228.8 15.1 221 6-227 411-701 (732)
13 2sqc_A Squalene-hopene cyclase 99.9 2.8E-22 9.5E-27 182.5 17.7 184 6-190 400-624 (631)
14 1w6k_A Lanosterol synthase; cy 99.9 7E-22 2.4E-26 182.0 16.1 211 6-218 358-632 (732)
15 1qqf_A Protein (complement C3D 99.8 1.8E-19 6.3E-24 148.5 14.9 163 53-217 39-259 (277)
16 2wy7_A Complement C3D fragment 99.8 4.6E-19 1.6E-23 148.4 14.4 163 53-217 55-275 (310)
17 1qqf_A Protein (complement C3D 99.8 8E-18 2.7E-22 138.7 13.4 172 10-190 44-273 (277)
18 2wy7_A Complement C3D fragment 99.7 3.5E-17 1.2E-21 137.0 14.1 175 8-191 58-290 (310)
19 1hzf_A Complement factor C4A; 99.7 8.2E-17 2.8E-21 137.7 14.3 199 6-217 93-345 (367)
20 2hr0_B Complement C3 alpha' ch 99.6 3.8E-14 1.3E-18 134.0 15.5 190 9-216 304-519 (915)
21 4acq_A Alpha-2-macroglobulin; 99.5 2.6E-14 8.8E-19 140.2 12.7 203 7-217 986-1227(1451)
22 2pn5_A TEP1R, thioester-contai 99.5 6.3E-13 2.2E-17 130.0 14.8 161 54-216 874-1086(1325)
23 4fxk_B Complement C4-A alpha c 99.4 6.4E-12 2.2E-16 116.9 17.7 200 6-216 363-621 (767)
24 1r76_A Pectate lyase; A-helica 99.4 1.4E-12 4.9E-17 110.8 8.0 161 54-217 83-335 (408)
25 2b39_A C3; thioester, immune d 99.3 1.5E-11 5.2E-16 122.5 16.2 196 6-217 1041-1267(1661)
26 3prx_B Cobra venom factor; imm 99.3 1.3E-13 4.4E-18 136.1 0.0 193 6-217 1025-1249(1642)
27 2pn5_A TEP1R, thioester-contai 99.3 7.9E-12 2.7E-16 122.3 11.7 174 9-191 877-1102(1325)
28 1gxm_A Pectate lyase; mechanis 99.2 2.1E-12 7.3E-17 106.8 2.6 153 56-210 35-251 (332)
29 1hzf_A Complement factor C4A; 99.2 3.1E-10 1.1E-14 96.9 13.4 108 53-160 92-226 (367)
30 3cu7_A Complement C5; Mg domai 99.2 1.9E-10 6.6E-15 114.7 13.5 201 5-218 1041-1287(1676)
31 1r76_A Pectate lyase; A-helica 99.1 1.1E-10 3.9E-15 99.2 8.0 162 6-169 83-335 (408)
32 1gxm_A Pectate lyase; mechanis 98.9 2.8E-10 9.5E-15 94.2 1.3 153 10-163 37-252 (332)
33 2hr0_B Complement C3 alpha' ch 98.8 4.9E-08 1.7E-12 92.3 14.1 142 54-209 301-466 (915)
34 4acq_A Alpha-2-macroglobulin; 98.8 6E-08 2.1E-12 95.5 13.1 153 54-214 985-1156(1451)
35 2bb6_A TCII, TC II, transcobal 98.7 1.1E-07 3.6E-12 81.4 10.4 130 38-188 141-282 (414)
36 2bb6_A TCII, TC II, transcobal 98.5 3.3E-07 1.1E-11 78.4 7.7 116 87-216 142-269 (414)
37 2b39_A C3; thioester, immune d 98.4 5.9E-06 2E-10 82.7 16.1 143 54-210 1048-1214(1661)
38 4fxk_B Complement C4-A alpha c 98.3 1.4E-05 4.9E-10 74.2 15.3 130 33-162 339-505 (767)
39 2pmv_A Gastric intrinsic facto 98.3 1.7E-06 5.8E-11 73.6 7.2 115 86-216 117-245 (399)
40 3cu7_A Complement C5; Mg domai 98.2 1.4E-05 4.7E-10 80.1 12.3 145 57-213 1052-1220(1676)
41 2pmv_A Gastric intrinsic facto 98.1 4.9E-06 1.7E-10 70.8 7.5 129 38-189 117-259 (399)
42 3prx_B Cobra venom factor; imm 97.6 8.9E-06 3E-10 80.9 0.0 107 54-160 1032-1162(1642)
43 3pya_A ENT-copalyl diphosphate 96.3 0.087 3E-06 48.4 13.7 47 148-195 266-313 (727)
44 3sdr_A Alpha-bisabolene syntha 96.0 0.013 4.5E-07 54.5 6.9 98 7-112 57-162 (817)
45 3sdr_A Alpha-bisabolene syntha 95.9 0.0053 1.8E-07 57.1 3.8 62 146-208 99-162 (817)
46 3s9v_A Abietadiene synthase, c 95.5 0.0076 2.6E-07 55.8 3.5 61 147-208 73-135 (785)
47 3s9v_A Abietadiene synthase, c 95.2 0.033 1.1E-06 51.6 6.5 76 32-112 55-135 (785)
48 3p5p_A Taxadiene synthase; cla 95.0 0.037 1.3E-06 51.2 6.2 60 53-113 54-115 (764)
49 3pya_A ENT-copalyl diphosphate 94.7 0.021 7.2E-07 52.4 3.9 60 148-208 50-111 (727)
50 3p5p_A Taxadiene synthase; cla 94.6 0.024 8.2E-07 52.4 4.0 61 147-208 52-114 (764)
51 3k11_A Putative glycosyl hydro 89.5 2.5 8.4E-05 36.5 9.9 164 53-216 169-372 (445)
52 3pmm_A Putative cytoplasmic pr 76.5 4.6 0.00016 34.0 5.9 69 150-218 265-342 (382)
53 1wgn_A UBAP1, ubiquitin associ 73.0 4.7 0.00016 24.5 3.6 29 182-214 35-63 (63)
54 1wgn_A UBAP1, ubiquitin associ 72.6 5.2 0.00018 24.3 3.7 27 135-165 36-62 (63)
55 1nc5_A Hypothetical protein YT 57.0 17 0.00058 30.2 5.5 66 150-215 243-324 (373)
56 2dna_A Unnamed protein product 55.0 16 0.00054 22.6 3.7 17 149-165 47-63 (67)
57 2cpw_A CBL-interacting protein 54.8 16 0.00056 22.1 3.7 27 182-211 35-61 (64)
58 3pmm_A Putative cytoplasmic pr 52.8 82 0.0028 26.2 9.0 91 32-122 235-342 (382)
59 3k11_A Putative glycosyl hydro 52.7 57 0.002 28.0 8.1 89 32-120 268-372 (445)
60 1vg5_A RSGI RUH-014, rhomboid 49.8 21 0.00072 22.4 3.7 26 135-164 46-71 (73)
61 1vej_A Riken cDNA 4931431F19; 49.7 21 0.00071 22.5 3.7 17 149-165 57-73 (74)
62 2crn_A Ubash3A protein; compac 48.4 17 0.00059 22.1 3.1 26 182-210 25-50 (64)
63 2ekk_A UBA domain from E3 ubiq 47.0 18 0.00062 20.2 2.9 22 182-208 25-46 (47)
64 1wiv_A UBP14, ubiquitin-specif 46.2 24 0.00081 22.1 3.6 26 182-211 45-70 (73)
65 3ren_A Glycosyl hydrolase, fam 45.5 30 0.001 28.8 5.0 59 36-94 284-348 (350)
66 1nc5_A Hypothetical protein YT 44.0 80 0.0027 26.1 7.6 65 103-167 244-324 (373)
67 2dah_A Ubiquilin-3; UBA domain 43.5 29 0.001 20.2 3.5 25 183-211 27-51 (54)
68 2knz_A Ubiquilin-4; cytoplasm, 42.9 26 0.00088 20.3 3.1 24 182-209 28-51 (53)
69 3gt5_A N-acetylglucosamine 2-e 41.1 39 0.0013 28.2 5.3 114 103-216 16-157 (402)
70 1whc_A RSGI RUH-027, UBA/UBX 3 38.9 29 0.00099 21.0 3.0 26 182-210 25-50 (64)
71 2dag_A Ubiquitin carboxyl-term 38.1 29 0.001 21.7 3.0 26 182-210 25-50 (74)
72 1wji_A Tudor domain containing 36.6 40 0.0014 20.3 3.4 26 135-164 26-51 (63)
73 4b2v_A S64; toxin, ICK; NMR {S 36.5 26 0.00089 17.4 2.0 16 211-226 5-20 (32)
74 2dak_A Ubiquitin carboxyl-term 34.6 21 0.00071 21.5 1.9 25 182-210 25-49 (63)
75 2g3q_A Protein YBL047C; endocy 33.5 47 0.0016 18.0 3.1 23 182-208 20-42 (43)
76 1vek_A UBP14, ubiquitin-specif 32.3 39 0.0013 21.7 3.0 26 182-210 45-70 (84)
77 2cos_A Serine/threonine protei 31.6 74 0.0025 18.6 3.8 30 182-214 25-54 (54)
78 2dkl_A Trinucleotide repeat co 31.2 1E+02 0.0035 19.7 4.9 28 196-223 47-81 (85)
79 1veg_A NEDD8 ultimate buster-1 30.9 40 0.0014 21.7 2.8 25 182-210 45-69 (83)
80 2jy5_A Ubiquilin-1; UBA, alter 29.7 51 0.0017 18.9 2.9 23 182-208 29-51 (52)
81 4ae4_A Ubiquitin-associated pr 28.9 58 0.002 22.4 3.6 61 5-65 35-115 (118)
82 2dai_A Ubadc1, ubiquitin assoc 26.9 66 0.0022 20.6 3.3 25 182-210 45-69 (83)
83 2bwb_A Ubiquitin-like protein 26.8 72 0.0024 17.8 3.1 22 182-207 24-45 (46)
84 3ren_A Glycosyl hydrolase, fam 26.2 1.2E+02 0.0043 25.0 5.7 154 30-189 166-344 (350)
85 2gz6_A N-acetyl-D-glucosamine 26.0 45 0.0015 27.4 3.1 62 149-210 78-152 (388)
86 1wr1_B Ubiquitin-like protein 25.7 68 0.0023 19.0 3.0 22 183-208 35-56 (58)
87 1lf6_A Glucoamylase; (alpha/al 23.1 61 0.0021 29.3 3.6 35 180-216 345-379 (684)
88 1fp3_A N-acyl-D-glucosamine 2- 21.7 1.7E+02 0.0059 24.0 6.0 22 149-170 83-107 (402)
89 1ify_A HHR23A, UV excision rep 20.6 62 0.0021 18.2 2.1 21 135-159 25-45 (49)
90 1lf6_A Glucoamylase; (alpha/al 20.5 89 0.003 28.3 4.1 72 135-208 348-428 (684)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.4e-56 Score=375.64 Aligned_cols=225 Identities=58% Similarity=1.139 Sum_probs=214.5
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (227)
.+++++|++||+++.+...++.++..+++++|.+||++.+|.+|+..+..+++++++||+++|++||||++.++.++|+.
T Consensus 17 ~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~ 96 (331)
T 3dss_B 17 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL 96 (331)
T ss_dssp SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred hhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHH
Confidence 68999999999998655567778888999999999999999999987777999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~ 162 (227)
.||+|+++|.+++..+.++++++++||+++|++||||.+.+++++|+++||||+.+|.++|.++.++++++++||++||+
T Consensus 97 ~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~ 176 (331)
T 3dss_B 97 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176 (331)
T ss_dssp HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999998888899999999999999999999988999999999999999999999888899999999999999
Q ss_pred CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
+||||+.+|+.++|+.+|+||+++|.+++.++.++++++++||.++|+++|||++||||++|+||
T Consensus 177 ~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cy 241 (331)
T 3dss_B 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY 241 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHH
T ss_pred CCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchh
Confidence 99999999999999999999999999999988889999999999999999999999999999997
No 2
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=6.4e-53 Score=366.23 Aligned_cols=223 Identities=32% Similarity=0.550 Sum_probs=208.1
Q ss_pred cccHHHHHHHHHHc-ccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
.+++++|++||.++ |+.+|+|..+. .+++|.+||++.+|.+|+.. +...++++++||+++|++||||++.+...+|
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 57899999999999 89999998764 56789999999999999964 3346889999999999999999999888999
Q ss_pred hHHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHH
Q 027177 81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l 157 (227)
+..|++|+.+|.+++.. +.++++++++||+++|++||||++++++++|+++||+|+++|.++|..+.+.++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 668899999999999999999999889999999999999999999987777889999999
Q ss_pred HhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCCCC
Q 027177 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 158 ~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~cy 227 (227)
++||++||||+.+|+.++|+.+|+|||++|.++|..+.++++++++||+++|. ++|||++||||++|+||
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cY 300 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY 300 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTH
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHH
Confidence 99999999999999999999999999999999999888899999999999998 89999999999999998
No 3
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=4.7e-53 Score=368.27 Aligned_cols=223 Identities=25% Similarity=0.432 Sum_probs=202.1
Q ss_pred cccHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCC--CCC
Q 027177 3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNI--GHD 78 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~ 78 (227)
.|++++|++||+++-. -+..|. ..+.+++|.+||++.+|.+|+.. +...++++++||++||++||||++.+ ++.
T Consensus 60 ~L~~~~Hi~yl~~~L~~LP~~y~--~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~ 137 (520)
T 3q7a_B 60 GLRKQEHTQFLASSFFQLPGKFV--SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI 137 (520)
T ss_dssp CCCHHHHHHHHHHHHSCBCGGGG--GGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSC
T ss_pred ccCHHHHHHHHHHHhhhCChhhh--hcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 5899999999999853 334444 45799999999999999999953 44578899999999999999999999 899
Q ss_pred CChHHHHHHHHHHHhcccC------CCCC--HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccH
Q 027177 79 PHVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV 150 (227)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~ 150 (227)
+|+.+|++|+++|.+++.. +.++ ++++++||+++|++||+|.++.|++.|+++||+|+.+|.++|....+++
T Consensus 138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v 217 (520)
T 3q7a_B 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELL 217 (520)
T ss_dssp CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999864 3566 8899999999999999999988999999999999999999999777889
Q ss_pred HHHHHHHHhccCCCCCcCC-----------------------CCCCCCchhhchHHHHHHHHhcCCC------CCCHHHH
Q 027177 151 DKAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLL 201 (227)
Q Consensus 151 ~~~~~~l~~~Q~~dGGf~~-----------------------~~~~~~~~~~T~~al~aL~~~g~~~------~~~~~~~ 201 (227)
+++++||++||++||||+. .|+.|+|..+|||||++|.+++.++ .++.+++
T Consensus 218 ~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l 297 (520)
T 3q7a_B 218 HNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAA 297 (520)
T ss_dssp TTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHH
T ss_pred HHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHH
Confidence 9999999999999999999 6789999999999999999999863 5789999
Q ss_pred HHHHHccCc---cCCCcCCCCCCCCCCCC
Q 027177 202 GWWLCERQV---KSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 202 ~~wL~~~Q~---~~GGf~~~~~k~~D~cy 227 (227)
++||.+||. ++|||+|||||++|+||
T Consensus 298 ~~WL~~RQ~~~~e~GGF~GR~NKlvD~CY 326 (520)
T 3q7a_B 298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCY 326 (520)
T ss_dssp HHHHHHTBCCGGGTTCBBSSTTSCBCTTH
T ss_pred HHHHHHhCCcccCCCcccCCCCCCCchhh
Confidence 999999996 56999999999999998
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.2e-52 Score=358.41 Aligned_cols=221 Identities=30% Similarity=0.542 Sum_probs=201.0
Q ss_pred cccHHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccC---------CCCCcc
Q 027177 3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA 72 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~---------~dGgf~ 72 (227)
.+++++|++||+++.+. +.+|. ..+++++|.+||+|.+|++|+..+.++++++++||+++|+ ++|||+
T Consensus 19 ~l~~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 19 DFLRDRHVRFFQRCLQVLPERYS--SLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCHHHHHHHHHHHHHEECGGGG--GGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred ccCHHHHHHHHHHHhhcCCcccc--ccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 47899999999998764 44544 4579999999999999999998656679999999999999 689999
Q ss_pred CCCCC-----------------CCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccC-CCCCCCccchh
Q 027177 73 GNIGH-----------------DPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY 133 (227)
Q Consensus 73 ~~~~~-----------------~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~-~~~~~d~~~t~ 133 (227)
++++. .+|+.+|++|+++|.+++. .+.++++++++||+++|++||+|.+. .+++.|+++||
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY 176 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence 88753 4899999999999999974 57789999999999999999999986 68999999999
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCC----CHHHHHHHHHccC
Q 027177 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209 (227)
Q Consensus 134 ~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~----~~~~~~~wL~~~Q 209 (227)
+|+++|.++|....++++++++||++||++||||+..|+.++|+.+||||+++|.+++.++.. +++++++||.++|
T Consensus 177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence 999999999987788999999999999999999999999999999999999999999987543 6899999999999
Q ss_pred ccCCCcCCCCCCCCCCCC
Q 027177 210 VKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 210 ~~~GGf~~~~~k~~D~cy 227 (227)
+|||+|||||++|+||
T Consensus 257 --~gGf~GR~nK~~D~CY 272 (377)
T 1n4q_B 257 --QNGYHGRPNKPVDTCY 272 (377)
T ss_dssp --SSSBCSSTTSCCCTTH
T ss_pred --CCCcCCCCCcchhHHH
Confidence 9999999999999998
No 5
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=3.2e-51 Score=348.95 Aligned_cols=224 Identities=25% Similarity=0.377 Sum_probs=198.1
Q ss_pred CCcccHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccCCC----CCccC
Q 027177 1 MGELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAG 73 (227)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~~d----Ggf~~ 73 (227)
|..+++++|++|++++-+ -+..|. ..+++++|.+||+|.+|++|+.. .+.++++.++||.+||.++ |||++
T Consensus 1 ~~~l~~~kHiky~~~~L~~Lp~~~~--s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g 78 (390)
T 3dra_B 1 MNQLLINKHEKFFNRCLIGLPSTAQ--SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRS 78 (390)
T ss_dssp -CCCCHHHHHHHHHHHHHCCCGGGG--GGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECS
T ss_pred CccccHHHHHHHHHHHHHhCCcchh--hcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCC
Confidence 789999999999998743 334444 44799999999999999999987 3456889999999998653 89998
Q ss_pred CC-----C---CCCChHHHHHHHHHHHhcccC--CCCCHHHHHHHHHhccC---C-CCCcccCC-----------CCCCC
Q 027177 74 NI-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVD 128 (227)
Q Consensus 74 ~~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~Q~---~-dGg~~~~~-----------~~~~d 128 (227)
.+ + +.+|+.+||+|+.+|.+++.. +.+|++++++||.++|+ + ||+|.... +++.|
T Consensus 79 ~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D 158 (390)
T 3dra_B 79 THYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPD 158 (390)
T ss_dssp SGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCC
T ss_pred CccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcch
Confidence 85 5 579999999999999999874 77899999999999999 7 89999543 67999
Q ss_pred ccchhHHHHHHHHhhccC-------------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC
Q 027177 129 TRFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195 (227)
Q Consensus 129 ~~~t~~a~~~L~~~g~~~-------------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~ 195 (227)
++++|||++++.+++.+. .++++++++||++||+.||||+..|+.|+|..+|||||++|.+++++ .
T Consensus 159 ~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~ 237 (390)
T 3dra_B 159 LRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-L 237 (390)
T ss_dssp HHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-G
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-c
Confidence 999999999999999876 67899999999999999999999999999999999999999999987 3
Q ss_pred CCHHHHHHHHHccCc----------------------------cCCCcCCCCCCCCCCCC
Q 027177 196 VDKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 196 ~~~~~~~~wL~~~Q~----------------------------~~GGf~~~~~k~~D~cy 227 (227)
.+++++++||.+||. ++|||+|||||++|+||
T Consensus 238 ~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CY 297 (390)
T 3dra_B 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCY 297 (390)
T ss_dssp GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHH
T ss_pred ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhH
Confidence 678999999999997 57999999999999998
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.7e-48 Score=328.67 Aligned_cols=224 Identities=21% Similarity=0.351 Sum_probs=211.6
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (227)
+++++++++||+++|++||+|...+++.+++..||+++.+|.+++..+.++++++++||+++|++||||++.+..++|+.
T Consensus 65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~ 144 (331)
T 3dss_B 65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR 144 (331)
T ss_dssp GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence 46899999999999999999998888888999999999999999876667899999999999999999999877789999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~ 162 (227)
.||+|+.+|.+++..+..+++++++||+++|++||||++++..++|..+|||++++|.+++..+.++++++++||.++|+
T Consensus 145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~ 224 (331)
T 3dss_B 145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224 (331)
T ss_dssp HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence 99999999999998877889999999999999999999999999999999999999999999878889999999999999
Q ss_pred CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccC-CCcCCCCCCCCCCC
Q 027177 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVV 226 (227)
Q Consensus 163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~-GGf~~~~~k~~D~c 226 (227)
+||||+.+|++++|+.+|||++++|.++|+.+.++++++++||+++|+.+ |||+.+|++.+|.+
T Consensus 225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~ 289 (331)
T 3dss_B 225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPF 289 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHH
T ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHH
Confidence 99999999999999999999999999999887789999999999999987 99999999999953
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=4.4e-43 Score=304.53 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=203.3
Q ss_pred ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
.+++++++||.++|++||||..+..+.+.+..||.+|.+|.+++.. +.++++++++||+++|++||||+..++.+++
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d 200 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD 200 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence 3578999999999999999988777788899999999999999874 4568999999999999999999988777899
Q ss_pred hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~ 160 (227)
+..||+|+.+|.+++..+...++++++||+++|++||||+..|..+++..+||||+++|.++|..+.++++++++||+++
T Consensus 201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r 280 (437)
T 2h6f_B 201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR 280 (437)
T ss_dssp HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence 99999999999999876666688999999999999999999999999999999999999999998888999999999999
Q ss_pred cC-CCCCcCCCCCCCCchhhchHHHHHHHHhcCC---------C----CCCHHHHHHHHHc-cCccCCCcCCCCCCCCCC
Q 027177 161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL---------H----HVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV 225 (227)
Q Consensus 161 Q~-~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~---------~----~~~~~~~~~wL~~-~Q~~~GGf~~~~~k~~D~ 225 (227)
|. ++|||..+|++.+|+++|||++++|.+++.. + .++.+++.+||+. +|+++|||+.+|++.+|.
T Consensus 281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~ 360 (437)
T 2h6f_B 281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF 360 (437)
T ss_dssp BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence 98 7999999999999999999999999998753 1 3678999999998 799999999999999994
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=9.8e-41 Score=284.88 Aligned_cols=221 Identities=18% Similarity=0.280 Sum_probs=200.7
Q ss_pred cccHHHHHHHHHHccc---------CCCCcchhhcc-----------------cchHHHHHHHHHHHHHhCCC-CCcCHH
Q 027177 3 ELAADKHVKYIISVEK---------KKDSFESVVME-----------------HLRLNGAYWGLTTLDILGKL-DAVDEE 55 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~~-----------------~~~~~~~y~~l~~l~ll~~~-~~~~~~ 55 (227)
.++++++++||.++|+ ++|+|+.+... .+.+..||.+|.+|.+++.. +.++++
T Consensus 66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~ 145 (377)
T 1n4q_B 66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE 145 (377)
T ss_dssp GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence 4568999999999999 68999876532 46789999999999999863 457899
Q ss_pred HHHHHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177 56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (227)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~ 134 (227)
++++||+++|++||+|.+. ...+.++..||+|+.++.+++..+.++++++++||+++|++||||+..|..+++..+|||
T Consensus 146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c 225 (377)
T 1n4q_B 146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225 (377)
T ss_dssp HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence 9999999999999999985 456889999999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcc----cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 135 a~~~L~~~g~~~~~----~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
|+++|.+++..+.. +++++++||.+.| +|||..+|++.+|++++||++++|.+++..+-++.+++.+||+++|+
T Consensus 226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~ 303 (377)
T 1n4q_B 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303 (377)
T ss_dssp HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence 99999999975433 7899999999999 89999999999999999999999999998766889999999999999
Q ss_pred c-CCCcCCCCCCCCCC
Q 027177 211 K-SGGLNGRPEKLPDV 225 (227)
Q Consensus 211 ~-~GGf~~~~~k~~D~ 225 (227)
+ +|||+.+|++.||.
T Consensus 304 ~~~GGf~~~p~~~~D~ 319 (377)
T 1n4q_B 304 RLVGGFAKWPDSHPDA 319 (377)
T ss_dssp TTTCSBCSSTTSCCBH
T ss_pred CCCCCcCCCCCCCCCH
Confidence 8 99999999999994
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=9.7e-39 Score=272.17 Aligned_cols=221 Identities=23% Similarity=0.323 Sum_probs=196.8
Q ss_pred ccHHHHHHHHHHcccCC----CCcchhh-----c---ccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccC---
Q 027177 4 LAADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--- 66 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~--- 66 (227)
.++++.++||.++|.++ |+|+..+ + +.+.+..||+||.+|.+++.. +.++++++++||.++|+
T Consensus 53 ~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~ 132 (390)
T 3dra_B 53 QELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDG 132 (390)
T ss_dssp HHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSS
T ss_pred HHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCC
Confidence 35788999999998753 8887663 3 568899999999999999985 55789999999999998
Q ss_pred C-CCCccCCC-----------CCCCChHHHHHHHHHHHhcccCC-------------CCCHHHHHHHHHhccCCCCCccc
Q 027177 67 E-SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSG 121 (227)
Q Consensus 67 ~-dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGg~~~ 121 (227)
+ ||+|...+ +.+.++..||+|+.++.+++... .++++++++||++||+.||||+.
T Consensus 133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~ 212 (390)
T 3dra_B 133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS 212 (390)
T ss_dssp TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence 6 89999553 46889999999999999998765 67899999999999999999999
Q ss_pred CCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC----------------------------CCCCcCCCCCC
Q 027177 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGG 173 (227)
Q Consensus 122 ~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~----------------------------~dGGf~~~~~~ 173 (227)
.|..+++..+||||+++|.+++.+ ..+++++++||.++|. ++|||..+|++
T Consensus 213 ~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nK 291 (390)
T 3dra_B 213 TIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291 (390)
T ss_dssp STTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTC
T ss_pred CCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCC
Confidence 999999999999999999999986 3678999999999997 57999999999
Q ss_pred CCchhhchHHHHHHHHhcC--CCCCCHHHHHHHHHcc-Ccc-CCCcCCCCCCCCCC
Q 027177 174 ESHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDV 225 (227)
Q Consensus 174 ~~~~~~T~~al~aL~~~g~--~~~~~~~~~~~wL~~~-Q~~-~GGf~~~~~k~~D~ 225 (227)
.+|+.++||++++|.+++. .+.++.+++.+||+.+ |++ .|||+.+|+++||.
T Consensus 292 l~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~ 347 (390)
T 3dra_B 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDP 347 (390)
T ss_dssp CBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCH
T ss_pred ccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCch
Confidence 9999999999999999994 4567899999999997 665 99999999999994
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.2e-39 Score=282.44 Aligned_cols=222 Identities=19% Similarity=0.272 Sum_probs=198.4
Q ss_pred ccHHHHHHHHHHcccCCCCcchhh--cccchHHHHHHHHHHHHHhCCCC------CcC--HHHHHHHHHhccCCCCCccC
Q 027177 4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG 73 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~~l~~l~ll~~~~------~~~--~~~~i~~l~~~q~~dGgf~~ 73 (227)
.+++++++||.++|+++|||+..+ .+.+.+..||+||.+|.+++... .++ ++++++||.++|++||+|.+
T Consensus 109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 467899999999999999999887 78889999999999999998742 245 88999999999999999998
Q ss_pred CCCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCccc-----------------------CCCCCCCcc
Q 027177 74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR 130 (227)
Q Consensus 74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~-----------------------~~~~~~d~~ 130 (227)
..+.+.++..||+|+.+|.+++..+..+++++++||+++|+.||||+. .|..+++..
T Consensus 189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG 268 (520)
T 3q7a_B 189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG 268 (520)
T ss_dssp STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence 766688999999999999999886666789999999999999999999 568899999
Q ss_pred chhHHHHHHHHhhcc------CcccHHHHHHHHHhccC---CCCCcCCCCCCCCchhhchHHHHHHHHhcCC--------
Q 027177 131 FSYIAICCLSILQRL------DKINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------- 193 (227)
Q Consensus 131 ~t~~a~~~L~~~g~~------~~~~~~~~~~~l~~~Q~---~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-------- 193 (227)
+|||++++|.+++.+ ..++.+++++||..+|. ++|||..++++.+|++|+||..++|.+++..
T Consensus 269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~ 348 (520)
T 3q7a_B 269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK 348 (520)
T ss_dssp HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence 999999999999985 35789999999999996 5799999999999999999999999988753
Q ss_pred ------------------------CCCCHHHHHHHHH-ccCccC---CCcCCCCCCCCCC
Q 027177 194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDV 225 (227)
Q Consensus 194 ------------------------~~~~~~~~~~wL~-~~Q~~~---GGf~~~~~k~~D~ 225 (227)
..++.+++.+||+ .+|.+. |||+.+|+|.||.
T Consensus 349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~ 408 (520)
T 3q7a_B 349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQ 408 (520)
T ss_dssp C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCH
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcch
Confidence 1257889999999 589887 9999999999995
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.96 E-value=1.5e-28 Score=223.64 Aligned_cols=219 Identities=19% Similarity=0.211 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHcccCC-CCc------------chhh--cccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhcc
Q 027177 5 AADKHVKYIISVEKKK-DSF------------ESVV--MEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQ 65 (227)
Q Consensus 5 ~~~~~~~yl~~~q~~d-g~~------------~~~~--~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q 65 (227)
.++++++||++.|..+ |+| .+.. ...++++.|.+++.+|..++... ...++++++||+++|
T Consensus 332 ~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q 411 (631)
T 2sqc_A 332 RLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQ 411 (631)
T ss_dssp HHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhc
Confidence 3578999999998642 433 2111 11256899999999999988742 225779999999999
Q ss_pred CCCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCC
Q 027177 66 DESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWG 125 (227)
Q Consensus 66 ~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~ 125 (227)
++||||+.+.. ..+++..|..++.+|..++... ...++++++||.+.|++||||.+. +
T Consensus 412 ~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~-w- 489 (631)
T 2sqc_A 412 SSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGR-W- 489 (631)
T ss_dssp CTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCS-S-
T ss_pred CCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCC-C-
Confidence 99999976421 1267889999999999886422 223789999999999999999652 2
Q ss_pred CCCccchhHHH---HHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchHHHHHHHHhc
Q 027177 126 EVDTRFSYIAI---CCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAG 191 (227)
Q Consensus 126 ~~d~~~t~~a~---~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~al~aL~~~g 191 (227)
+.+++|++. .+|..+|.. ..+.++++++||+++|++||||+..+ ..+++++.|+|||.+|..+|
T Consensus 490 --g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag 567 (631)
T 2sqc_A 490 --GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGG 567 (631)
T ss_dssp --BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTT
T ss_pred --CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 345666554 445555542 24678999999999999999998653 34689999999999999999
Q ss_pred CCCCCCHHHHHHHHHccCccCCCcCCCCCC---CCCCCC
Q 027177 192 ALHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVVM 227 (227)
Q Consensus 192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k---~~D~cy 227 (227)
..+...++++++||.++|+++|||...... .+..||
T Consensus 568 ~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~y 606 (631)
T 2sqc_A 568 RAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFY 606 (631)
T ss_dssp CSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEE
T ss_pred CCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccce
Confidence 875556899999999999999999987753 667776
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.96 E-value=6.2e-29 Score=228.78 Aligned_cols=221 Identities=17% Similarity=0.201 Sum_probs=171.7
Q ss_pred HHHHHHHHHHcccCC--------------CCcchhhcc--cchHHHHHHHHHHHHHhCCC--------CCcCHHHHHHHH
Q 027177 6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI 61 (227)
Q Consensus 6 ~~~~~~yl~~~q~~d--------------g~~~~~~~~--~~~~~~~y~~l~~l~ll~~~--------~~~~~~~~i~~l 61 (227)
.+++++||+++|.++ |+|.+...+ ..+...|.+++.+|..+... ....++++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 468999999998765 888765422 34677888999999887431 123568999999
Q ss_pred HhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC------C--CCCHHHHHHHHHhc
Q 027177 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV------D--ILDADKVSNYIVGL 112 (227)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~------~--~~~~~~~~~~l~~~ 112 (227)
+++|++||||+.+.. ..+++..|.+++.+|..++.. + ...++++++||++.
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999974321 234678999999999887542 0 12378999999999
Q ss_pred cCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc-----ccHHHHHHHHHhccCCCCCcCCC----------CCCCCch
Q 027177 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS 177 (227)
Q Consensus 113 Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~-----~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~ 177 (227)
|++||+|.+ .++..+...|++++.+|.++|.... +.++++++||+++|++||||+.. ++..+++
T Consensus 571 Q~~DGsW~g-~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEG-SWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCC-SSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccC-cCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 999999987 4455555567778888888887432 46899999999999999999974 2456899
Q ss_pred hhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM 227 (227)
Q Consensus 178 ~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy 227 (227)
..|+||+.+|..++..+...++++++||+++|+++|||.-.+ +..+.+||
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA 701 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence 999999999999987755668999999999999999999655 33456664
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.89 E-value=2.8e-22 Score=182.46 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=145.3
Q ss_pred HHHHHHHHHHcccCCCCcchhhc-------------------ccchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhcc
Q 027177 6 ADKHVKYIISVEKKKDSFESVVM-------------------EHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQ 65 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~-------------------~~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q 65 (227)
++++++||.++|++||+|..+.. +++++..|.+++.+|..++... ...++++++||+++|
T Consensus 400 l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q 479 (631)
T 2sqc_A 400 MTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQ 479 (631)
T ss_dssp HHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 56899999999999999965421 1245667889999999887642 346889999999999
Q ss_pred CCCCCccCCCCCCCChHHHHHHHHHHHhcccC-CCCCHHHHHHHHHhccCCCCCcccCC----------CCCCCccchhH
Q 027177 66 DESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDI----------WGEVDTRFSYI 134 (227)
Q Consensus 66 ~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGg~~~~~----------~~~~d~~~t~~ 134 (227)
++||||.+.++ ..++..|..++.+|..++.. ....++++++||+++|++||||+..+ ++.+++..|++
T Consensus 480 ~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ 558 (631)
T 2sqc_A 480 KPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAW 558 (631)
T ss_dssp CTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHH
T ss_pred CCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHH
Confidence 99999976554 35678888999999887642 23347899999999999999997532 34678888999
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCC----------CchhhchHHHHHHHHh
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGE----------SHSGQIFCCVGALAIA 190 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~----------~~~~~T~~al~aL~~~ 190 (227)
++.+|...|......++++++||+++|++||||+...... -+.+.+.++|.||...
T Consensus 559 ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 559 ALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRY 624 (631)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHH
Confidence 9999999998766778999999999999999999875431 2345567778887654
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.88 E-value=7e-22 Score=181.97 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=152.3
Q ss_pred HHHHHHHHHHc--ccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccCCC-----------
Q 027177 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES----------- 68 (227)
Q Consensus 6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~~d----------- 68 (227)
..+|++.|.+. ..+||.+. ..-..+.+|.|.+++.+|...+... ...++++++||+++|+.+
T Consensus 358 ~~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~ 436 (732)
T 1w6k_A 358 FQEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ 436 (732)
T ss_dssp HHHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred HHHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccC
Confidence 44666666654 45676442 1111256888988888888877532 124679999999999766
Q ss_pred ---CCccCCCC--CCCChHHHHHHHHHHHhcccCC-----CCC---HHHHHHHHHhccCCCCCcccCCC-----------
Q 027177 69 ---GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----ILD---ADKVSNYIVGLQNEDGSFSGDIW----------- 124 (227)
Q Consensus 69 ---Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~~---~~~~~~~l~~~Q~~dGg~~~~~~----------- 124 (227)
|||+.... ..+++..|..++.+|..+.... .++ ++++++||.++|++||||.....
T Consensus 437 ~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~ 516 (732)
T 1w6k_A 437 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN 516 (732)
T ss_dssp CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred CCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCc
Confidence 88876543 3578999999999998875321 222 58899999999999999963211
Q ss_pred -----CCC--C---ccchhHHHHHHHHhhcc--------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHH
Q 027177 125 -----GEV--D---TRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (227)
Q Consensus 125 -----~~~--d---~~~t~~a~~~L~~~g~~--------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~a 186 (227)
+.. | +..|..++.+|..++.. ....++++++||+++|++||||...++ ..+.+.|++++.+
T Consensus 517 ~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~A 595 (732)
T 1w6k_A 517 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEA 595 (732)
T ss_dssp CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHH
T ss_pred chhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHH
Confidence 111 1 22344566667666542 134689999999999999999987765 3567889999999
Q ss_pred HHHhcCCCC-----CCHHHHHHHHHccCccCCCcCCC
Q 027177 187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 187 L~~~g~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
|..+|.... ..++++++||+++|++||||+..
T Consensus 596 L~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~ 632 (732)
T 1w6k_A 596 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGED 632 (732)
T ss_dssp HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBC
T ss_pred HHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCC
Confidence 999997532 35899999999999999999864
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.82 E-value=1.8e-19 Score=148.52 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=123.5
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC---
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG--- 125 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~~--- 125 (227)
.+++++++++++|++||||+.+++.+++...|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 39 ~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~ 118 (277)
T 1qqf_A 39 LIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQ 118 (277)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCG
T ss_pred HHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccch
Confidence 3556777799999999999999988999999999999999987654444 4789999996 99999999864210
Q ss_pred ----------CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCC-------------------------
Q 027177 126 ----------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL------------------------- 163 (227)
Q Consensus 126 ----------~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~------------------------- 163 (227)
++++..|..++.+|...+.. ..+.++++++||.++++.
T Consensus 119 ~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l 198 (277)
T 1qqf_A 119 EMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYL 198 (277)
T ss_dssp GGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHH
T ss_pred hhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 11233455666666655431 134688999999998764
Q ss_pred --------CCCcCCCCCCC-CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 164 --------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 164 --------dGGf~~~~~~~-~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
+|+|...++.. .+++.|+|+|.+|...+.. ..+.++++||+++|+++|||..
T Consensus 199 ~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 199 TKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF--DSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp HHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--TSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence 44444344321 2677899999999888754 4689999999999999999975
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.81 E-value=4.6e-19 Score=148.43 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=123.2
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC---
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG--- 125 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~~--- 125 (227)
.+++++++++++|++||||+.+++.+++...|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 55 ~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~ 134 (310)
T 2wy7_A 55 LIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQ 134 (310)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCG
T ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCH
Confidence 3567778899999999999999988899999999999999987654444 4789999996 99999999864210
Q ss_pred ----------CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCC-------------------------
Q 027177 126 ----------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL------------------------- 163 (227)
Q Consensus 126 ----------~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~------------------------- 163 (227)
++++..|..++.+|...+.. ..+.++++++||.++|+.
T Consensus 135 ~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l 214 (310)
T 2wy7_A 135 EMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLL 214 (310)
T ss_dssp GGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 12233455666666655431 134688999999998763
Q ss_pred --------CCCcCCCCCCC-CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 164 --------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 164 --------dGGf~~~~~~~-~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
+|+|...++.. .+++.|+|||.+|...+.. ..+.++++||+++|+.+|||..
T Consensus 215 ~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 215 NKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp HHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTHHHHHHHHHHTTCCCCSTTC
T ss_pred HHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence 34443333321 2678899999999988754 5689999999999999999964
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.76 E-value=8e-18 Score=138.71 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=124.4
Q ss_pred HHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC--------
Q 027177 10 VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH-------- 77 (227)
Q Consensus 10 ~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~-------- 77 (227)
++.+.+.|++||||..+..++++.|.|-+++.+|..+.... +..++++++||.+ .|++||+|....+.
T Consensus 44 ~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~ 123 (277)
T 1qqf_A 44 YTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGG 123 (277)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGG
T ss_pred HHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCC
Confidence 33377789999999999888889999999999999998642 2356799999996 99999999765431
Q ss_pred -----CCChHHHHHHHHHHHhcccC-----C--CCCHHHHHHHHHhccCC------------------------------
Q 027177 78 -----DPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNE------------------------------ 115 (227)
Q Consensus 78 -----~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~------------------------------ 115 (227)
++++..|++++.+|...+.. . ...++++++||.++++.
T Consensus 124 ~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~ 203 (277)
T 1qqf_A 124 FRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLN 203 (277)
T ss_dssp GGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred CCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 23466688888888765321 1 12367899999998764
Q ss_pred ---CCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177 116 ---DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (227)
Q Consensus 116 ---dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~ 190 (227)
+|.|...+.. ..++..|.+++.+|...+. ...++++++||.+.|+++|||.. +..|..||.||...
T Consensus 204 ~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~y 273 (277)
T 1qqf_A 204 TAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQY 273 (277)
T ss_dssp HSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHHH
Confidence 3333222211 0144556667766666665 35789999999999999999984 35688888888653
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.73 E-value=3.5e-17 Score=136.96 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=125.7
Q ss_pred HHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC------
Q 027177 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (227)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (227)
++++.+.+.|++||||..+...+.+.|.|-+++.+|..+.... +..++++++||.+ .|++||+|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~ 137 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 137 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence 3344477789999999999888889999999999999998642 2356799999996 99999999765431
Q ss_pred -------CCChHHHHHHHHHHHhcccC-----C--CCCHHHHHHHHHhccCC----------------------------
Q 027177 78 -------DPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNE---------------------------- 115 (227)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~---------------------------- 115 (227)
++.+..|++++.+|...+.. . ...++++++||.++|+.
T Consensus 138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l 217 (310)
T 2wy7_A 138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF 217 (310)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 23466688888888765321 1 12367899999998764
Q ss_pred -----CCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177 116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (227)
Q Consensus 116 -----dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~ 189 (227)
+|.|...+.. ..++..|.+++.+|...+. ...++++++||.+.|+++|||.. ...|..||.||..
T Consensus 218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~ 288 (310)
T 2wy7_A 218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ 288 (310)
T ss_dssp HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence 2333221111 0144566667777666665 35789999999999999999974 3568888888876
Q ss_pred hc
Q 027177 190 AG 191 (227)
Q Consensus 190 ~g 191 (227)
..
T Consensus 289 y~ 290 (310)
T 2wy7_A 289 YQ 290 (310)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.72 E-value=8.2e-17 Score=137.67 Aligned_cols=199 Identities=15% Similarity=0.133 Sum_probs=133.5
Q ss_pred HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCC-----
Q 027177 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH----- 77 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~----- 77 (227)
+++++++|.+.|++||||+.|..+..+.|.|.+++.+|..++.. ++..++++++||++.|++||+|......
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 45677888889999999999987777889999999999988753 2236789999999999999999865321
Q ss_pred -------CCChHHHHHHHHHHHhcccCC------------CCCHHHHHHHHHhc--cCCCCCcccCCCCCCCccchhHHH
Q 027177 78 -------DPHVLYTLSAVQVLALFDKVD------------ILDADKVSNYIVGL--QNEDGSFSGDIWGEVDTRFSYIAI 136 (227)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~~------------~~~~~~~~~~l~~~--Q~~dGg~~~~~~~~~d~~~t~~a~ 136 (227)
++.+..|.+++.+|...+... ...++++++||++. ++. .++.....+.
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~-----------~~~y~~Al~a 241 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGL-----------LGAHAAAITA 241 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CCHHHHHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhccc-----------CCHHHHHHHH
Confidence 234678888888887654311 11367899999876 321 1111122233
Q ss_pred HHHHHhhccCcccHHHHHHHHHhccCCCCC---cCCCCC---------------------CC-CchhhchHHHHHHHHhc
Q 027177 137 CCLSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPG---------------------GE-SHSGQIFCCVGALAIAG 191 (227)
Q Consensus 137 ~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~---------------------~~-~~~~~T~~al~aL~~~g 191 (227)
.+|.+.|.... ..+.+.+-|.+.-..+|+ |..... .. .+++.|+|+|.+|...+
T Consensus 242 yAL~l~~~~~~-~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~ 320 (367)
T 1hzf_A 242 YALTLTKAPAD-LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE 320 (367)
T ss_dssp HHHHHTTCCHH-HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCcHH-HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhcc
Confidence 45666665321 123455556554333333 654210 11 26789999999998764
Q ss_pred CCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 192 ALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
. +...+.++++||.++|+.+|||.-
T Consensus 321 ~-~~~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 321 G-KAEMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp C-SSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred C-chhhhHHHHHHHHhCcCCCCCccc
Confidence 2 234478999999999999999973
No 20
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.57 E-value=3.8e-14 Score=134.00 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=132.1
Q ss_pred HHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC-------
Q 027177 9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------- 77 (227)
Q Consensus 9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------- 77 (227)
+++.+.+.|++||||..|...+.+.|.|-|++..|..+.... +..++++++||.+ .|++||+|......
T Consensus 304 g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~g 383 (915)
T 2hr0_B 304 GYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIG 383 (915)
T ss_dssp HHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCC
T ss_pred HHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcC
Confidence 444466679999999999888889999999999999887542 2357899999995 99999999653321
Q ss_pred ------CCChHHHHHHHHHHHhcccCC--CC-----CHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc
Q 027177 78 ------DPHVLYTLSAVQVLALFDKVD--IL-----DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR 144 (227)
Q Consensus 78 ------~~~~~~T~~al~~L~~l~~~~--~~-----~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~ 144 (227)
++.+..|.+++.+|...+... .+ .+.++++||.+.+..- .+......+..+|.+.|.
T Consensus 384 g~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g~ 453 (915)
T 2hr0_B 384 GLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMGR 453 (915)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTTC
T ss_pred CccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcCC
Confidence 234667788888887765421 11 2568999999976431 111112223345666665
Q ss_pred cCcccHHHHHHHHHhccCCCCC-cCCCCCC-CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177 145 LDKINVDKAVEYIVSCKNLDGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 145 ~~~~~~~~~~~~l~~~Q~~dGG-f~~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
. .+.+++.|.++.. +|. |.. ++. ..+.+.|+|||.+|...+.. ..+.++++||+++|+.+|||.
T Consensus 454 ~----a~~~l~~L~~~~~-~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~ 519 (915)
T 2hr0_B 454 L----KGPLLNKFLTTAK-DKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYG 519 (915)
T ss_dssp C----CHHHHHHHHHTSB-TTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCC
T ss_pred h----HHHHHHHHHhhcc-CCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCcc
Confidence 3 3456666766543 554 543 222 23678899999999988764 358899999999999999996
No 21
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=140.20 Aligned_cols=203 Identities=9% Similarity=0.051 Sum_probs=138.2
Q ss_pred HHHHHHHHHcccCCCCcchhhc----ccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCC----
Q 027177 7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI---- 75 (227)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~---- 75 (227)
+++++.+...|++||+|..|.. .+.+.|.|-|++..|..+... ++..++++++||++.|++||+|....
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 3455666667999999998863 357889999999999988753 23468899999999999999997421
Q ss_pred -----CCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCC--CCCcccCCCCCCCccchhHHHHHHHHhhccCc
Q 027177 76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK 147 (227)
Q Consensus 76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~--dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~ 147 (227)
|.++++..|++++.+|...+... ...++++++||++.... +|. ...+......+..||++.|..
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~------~~~~~y~~AllAyAlal~g~~-- 1137 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGD------HGSHVYTKALLAYAFALAGNQ-- 1137 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSC------SSSTHHHHHHHHHHHHHHTCH--
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccc------ccCChHHHHHHHHHHHhcCCh--
Confidence 22456788999999998876432 22368899999875211 010 011222233344677777762
Q ss_pred ccHHHHHHHHHhccCCCCC---cCCCCC-------------CCCchhhchHHHHHHHHhcCC----CCCCHHHHHHHHHc
Q 027177 148 INVDKAVEYIVSCKNLDGG---FGCTPG-------------GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE 207 (227)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGG---f~~~~~-------------~~~~~~~T~~al~aL~~~g~~----~~~~~~~~~~wL~~ 207 (227)
...+.+++-|.+....+|+ |+.... .....+.|+|||.+|..++.. +...+.+.++||.+
T Consensus 1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A 1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 2234466666665555565 653221 123577999999999887632 11236778999999
Q ss_pred cCccCCCcCC
Q 027177 208 RQVKSGGLNG 217 (227)
Q Consensus 208 ~Q~~~GGf~~ 217 (227)
+|+.+|||.-
T Consensus 1218 qr~~~Ggf~S 1227 (1451)
T 4acq_A 1218 QQNAQGGFSS 1227 (1451)
T ss_dssp CCCTTSCCSS
T ss_pred cCCCCCCccc
Confidence 9999999963
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=6.3e-13 Score=130.04 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=115.2
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC-CC---HHHHHHHHHhccCCCCCcccCCC-----
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVGLQNEDGSFSGDIW----- 124 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~~Q~~dGg~~~~~~----- 124 (227)
+++++++|+++|++||||+.+++.+++.+.|.+++.+|..+.+... ++ .+++++||.+.|.+||+|.+...
T Consensus 874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~ 953 (1325)
T 2pn5_A 874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE 953 (1325)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence 5567778899999999999999999999999999999999876432 44 57899999999999999976311
Q ss_pred --CC--CCccchhHHHHHHHHhhcc---CcccHHHHHHHHHhccCC-CCCcCCC--------------------------
Q 027177 125 --GE--VDTRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNL-DGGFGCT-------------------------- 170 (227)
Q Consensus 125 --~~--~d~~~t~~a~~~L~~~g~~---~~~~~~~~~~~l~~~Q~~-dGGf~~~-------------------------- 170 (227)
+. .+..+|.+++.+|...|.. ....++++++||.+.|+. +++|+..
T Consensus 954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~ 1033 (1325)
T 2pn5_A 954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSF 1033 (1325)
T ss_dssp HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCE
T ss_pred hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhh
Confidence 11 1222333334444434432 123577888998887654 5554221
Q ss_pred ---------CCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177 171 ---------PGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 171 ---------~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
+...+....|+|||.+|...+.. ..+.+.++||+++|+.+|||.
T Consensus 1034 ~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~--~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A 1034 IDADKNERFWNTTNPIETTAYALLSFVMAEKY--TDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp EETTTTEEECCSSSHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCCTTSSCS
T ss_pred hccCCCcccCCCCCchHHHHHHHHHHhhhccc--hhhHHHHHHHHhccCCCCCcc
Confidence 01134667889999998887643 346788999999999999996
No 23
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.42 E-value=6.4e-12 Score=116.85 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=126.0
Q ss_pred HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCC
Q 027177 6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI 75 (227)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~ 75 (227)
+++++++|.. .|++||||..|++.+.+.|.|.|++.+|..+.... +..+.+++.||.+.|.+||.|...-
T Consensus 363 ~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 363 KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcc
Confidence 4566666654 49999999999988899999999999999998752 3357789999999999999986421
Q ss_pred --------C----CCCChHHHHHHHHHHHhcccCCC------------CCHHHHHHHHHhccCCCCCcccCCCCCCCccc
Q 027177 76 --------G----HDPHVLYTLSAVQVLALFDKVDI------------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF 131 (227)
Q Consensus 76 --------~----~~~~~~~T~~al~~L~~l~~~~~------------~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~ 131 (227)
| .+.++..|++++.+|........ ..+.++++||.+....+ ..++..
T Consensus 443 ~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~---------~~~~y~ 513 (767)
T 4fxk_B 443 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG---------LLGAHA 513 (767)
T ss_dssp CSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC---------CCCHHH
T ss_pred hhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc---------cCCHHH
Confidence 1 12346778888888765433210 01467888987763221 111111
Q ss_pred hhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCC---cCCCCCC----------------------CCchhhchHHHHH
Q 027177 132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPGG----------------------ESHSGQIFCCVGA 186 (227)
Q Consensus 132 t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~~----------------------~~~~~~T~~al~a 186 (227)
...+..+|.+.+... ...+.+.+-|.+.-..+|+ |....+. ..+++.|+|+|.+
T Consensus 514 ~Al~ayaL~l~~~~~-~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla 592 (767)
T 4fxk_B 514 AAITAYALSLTKAPV-DLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLH 592 (767)
T ss_dssp HHHHHHHHHHHTCTT-HHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHH
Confidence 112334566666522 1223344455543322222 2111110 0135678999988
Q ss_pred HHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177 187 LAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 187 L~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
+..... +...+.++++||.++|+..|||.
T Consensus 593 ~l~~~~-~~~~a~~iv~WL~~Qr~~~Ggf~ 621 (767)
T 4fxk_B 593 LLLHEG-KAEMADQASAWLTRQGSFQGGFR 621 (767)
T ss_dssp HHHHTS-SCHHHHHHHHHHHHTCCTTSSCS
T ss_pred HHhcCC-chhHHHHHHHHHHHhhcCCCCCc
Confidence 776542 23347889999999999999996
No 24
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.35 E-value=1.4e-12 Score=110.79 Aligned_cols=161 Identities=17% Similarity=0.057 Sum_probs=97.4
Q ss_pred HHHHHHHHHhccCCCCCccCCCC--------------------------------------CCCChHHHHHHHHHHHhcc
Q 027177 54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD 95 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~ 95 (227)
.+++.+.|+..|+++|||.-... ...+...|..++.+|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 56899999999999999964210 0123356777888887653
Q ss_pred cC-C--C-----CCHHHHHHHHHhccCCCCCcccCC-CCC--------CCccchhHHHHHHHHhhcc-------------
Q 027177 96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGDI-WGE--------VDTRFSYIAICCLSILQRL------------- 145 (227)
Q Consensus 96 ~~-~--~-----~~~~~~~~~l~~~Q~~dGg~~~~~-~~~--------~d~~~t~~a~~~L~~~g~~------------- 145 (227)
.. . . -.+.|+++||++.|.++|||...- ... +| ..|--++..|..++..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 32 1 1 115789999999999999998642 110 11 1122233334444431
Q ss_pred -CcccHHHHHHHHHhccCC-CCCcCCCCCCCCchhhch-------------------HHHHHHHHhcCCCC---CCHHHH
Q 027177 146 -DKINVDKAVEYIVSCKNL-DGGFGCTPGGESHSGQIF-------------------CCVGALAIAGALHH---VDKDLL 201 (227)
Q Consensus 146 -~~~~~~~~~~~l~~~Q~~-dGGf~~~~~~~~~~~~T~-------------------~al~aL~~~g~~~~---~~~~~~ 201 (227)
....++|+++||+++|.+ ||.|. +++. .|.+.|+ .+|..|......++ ..++++
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~-qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A 319 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL-GWGQ-QHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG 319 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC-CCCS-EECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc-chhc-ccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 235688999999999999 99998 6542 2222222 22222222222111 138999
Q ss_pred HHHHHccCccCCCcCC
Q 027177 202 GWWLCERQVKSGGLNG 217 (227)
Q Consensus 202 ~~wL~~~Q~~~GGf~~ 217 (227)
+.||.++|+++|+|..
T Consensus 320 v~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 320 VAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHSCCCC-----
T ss_pred HHHHHHhhcCCCceee
Confidence 9999999999999973
No 25
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.34 E-value=1.5e-11 Score=122.47 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=132.9
Q ss_pred HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCC
Q 027177 6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGN 74 (227)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~ 74 (227)
+++++++|.. .|++||+|..|++.+.+.|.|.|++..|..+.... +..++++++||.+ .|++||.|...
T Consensus 1041 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1041 RQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 3455666553 58999999999888889999999999999988642 3357799999995 99999998532
Q ss_pred C--------C-----CCCChHHHHHHHHHHHhcccCC--CC-----CHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177 75 I--------G-----HDPHVLYTLSAVQVLALFDKVD--IL-----DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (227)
Q Consensus 75 ~--------~-----~~~~~~~T~~al~~L~~l~~~~--~~-----~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~ 134 (227)
. | .++++..|++++.+|...+... .+ .+.++++||.+.... ..++.....
T Consensus 1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~ 1190 (1661)
T 2b39_A 1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE----------LRRPYTVAI 1190 (1661)
T ss_dssp SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT----------CCSHHHHHH
T ss_pred cceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc----------cCCHHHHHH
Confidence 1 1 1226777888888887764421 11 246789999875321 111122222
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG 214 (227)
++.+|.+.|.. .+.+++.|.+.......|....+...+.+.|+|||.+|...+.. ....+.++||+++|+.+||
T Consensus 1191 layAL~l~g~~----a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~gg 1264 (1661)
T 2b39_A 1191 AAYALALLGKL----EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGGG 1264 (1661)
T ss_dssp HHHHHHHTTCC----CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTTB
T ss_pred HHHHHHHcCCc----HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCC
Confidence 33566777764 25566777765553334543212123567899999999888754 3367889999999999999
Q ss_pred cCC
Q 027177 215 LNG 217 (227)
Q Consensus 215 f~~ 217 (227)
|.-
T Consensus 1265 ~~S 1267 (1661)
T 2b39_A 1265 YGS 1267 (1661)
T ss_dssp BCS
T ss_pred ccc
Confidence 963
No 26
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=99.32 E-value=1.3e-13 Score=136.05 Aligned_cols=193 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCC----CCcCHHHHHHHHHh-ccCCCCCccC
Q 027177 6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAG 73 (227)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~----~~~~~~~~i~~l~~-~q~~dGgf~~ 73 (227)
++++++||+. .|++||||..|.+.+.+.|.|.|++.+|...... ++..+.++++||.+ +|++||.|..
T Consensus 1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence 3567777765 4889999999987788999999999999988763 23467899999998 8999999954
Q ss_pred CC------------CCCCChHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177 74 NI------------GHDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (227)
Q Consensus 74 ~~------------~~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~ 134 (227)
.. +.++++..|++++.+|...+... ...+.++++||.+.... ..+......
T Consensus 1105 ~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~----------~~~~Y~~Ai 1174 (1642)
T 3prx_B 1105 NAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK----------LQRPYTTAL 1174 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc----------CCCHHHHHH
Confidence 21 12456788888888887664321 12367899999875211 111111112
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCC-CCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCC
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~G 213 (227)
+..||.+.+.... +.+..+ .+. ..--|. .++ ...+.+.|+|||.++...+.. ......++||.++|+..|
T Consensus 1175 ~aYAl~l~~~~~~---~~l~~l-~~~--~~~~W~-~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~~~G 1245 (1642)
T 3prx_B 1175 TAYALAAADQLND---DRVLMA-AST--GRDHWE-EYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNFYGE 1245 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCchH---HHHHHH-Hhc--CCCCCC-CCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhccCCC
Confidence 3345666676421 111111 111 112343 333 235788999999999887643 347889999999999999
Q ss_pred CcCC
Q 027177 214 GLNG 217 (227)
Q Consensus 214 Gf~~ 217 (227)
||..
T Consensus 1246 gf~S 1249 (1642)
T 3prx_B 1246 TYGQ 1249 (1642)
T ss_dssp ----
T ss_pred cccC
Confidence 9975
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=7.9e-12 Score=122.35 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=120.3
Q ss_pred HHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccCCCCCccCCCC--------
Q 027177 9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDESGGFAGNIG-------- 76 (227)
Q Consensus 9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~~dGgf~~~~~-------- 76 (227)
+++.+.++|++||+|+.|.+++.+.|.|.+++.+|..+.... +..++++++||.+.|++||.|.....
T Consensus 877 g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g 956 (1325)
T 2pn5_A 877 GYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQG 956 (1325)
T ss_dssp HHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHC
T ss_pred HHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcC
Confidence 334446789999999999988899999999999999987532 23477999999999999999865321
Q ss_pred -CCCChHHHHHHHHHHHhcccCC---CCCHHHHHHHHHhccCC-CCCcccC-----------C-----------------
Q 027177 77 -HDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNE-DGSFSGD-----------I----------------- 123 (227)
Q Consensus 77 -~~~~~~~T~~al~~L~~l~~~~---~~~~~~~~~~l~~~Q~~-dGg~~~~-----------~----------------- 123 (227)
....+..|++++.+|...+... ...++++++||.+.|.. +++|... +
T Consensus 957 ~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~ 1036 (1325)
T 2pn5_A 957 GLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDA 1036 (1325)
T ss_dssp CSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEET
T ss_pred cccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhcc
Confidence 1234566777777765543221 12356788899887765 6666421 0
Q ss_pred ------C-CCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177 124 ------W-GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (227)
Q Consensus 124 ------~-~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g 191 (227)
| ..++++.|.+++.+|...+. .....+.++||++.|+.+|||.. +-.|.+||.||....
T Consensus 1037 ~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y~ 1102 (1325)
T 2pn5_A 1037 DKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKMA 1102 (1325)
T ss_dssp TTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHHH
Confidence 0 01234455556655555554 33567899999999999999973 346888888887653
No 28
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.23 E-value=2.1e-12 Score=106.82 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=98.3
Q ss_pred HHHHHHHhccCCCCCccCCCC-------------CCCChHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHhccCCCC
Q 027177 56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG 117 (227)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dG 117 (227)
.+.+.|+..|+++|||.-... ...+...|..++.+|..+.... .-.++|+++||.+.|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 347899999999999985321 1235567888888887653311 1125889999999999999
Q ss_pred CcccC-CCCC--------CCccchhHHHHHHHHhhc----------------cCcccHHHHHHHHHhccCCCCCcCCCCC
Q 027177 118 SFSGD-IWGE--------VDTRFSYIAICCLSILQR----------------LDKINVDKAVEYIVSCKNLDGGFGCTPG 172 (227)
Q Consensus 118 g~~~~-~~~~--------~d~~~t~~a~~~L~~~g~----------------~~~~~~~~~~~~l~~~Q~~dGGf~~~~~ 172 (227)
||... +... +| ..|--++..|..++. .....++|+++||+++|.+||||-.+++
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99864 2111 11 112233444444431 1134688999999999999999987766
Q ss_pred CCCchhhchH----------HHHHHHH-------hcCCCCC----CHHHHHHHHHccCc
Q 027177 173 GESHSGQIFC----------CVGALAI-------AGALHHV----DKDLLGWWLCERQV 210 (227)
Q Consensus 173 ~~~~~~~T~~----------al~aL~~-------~g~~~~~----~~~~~~~wL~~~Q~ 210 (227)
. .|.+.|+. +|+++.. ++.+.++ .++++++||.++|+
T Consensus 194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 3 33344444 3333222 2333322 38999999999998
No 29
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.18 E-value=3.1e-10 Score=96.85 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=82.7
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCCC----
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG---- 125 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~~---- 125 (227)
.++++++||++.|++||||+.+.+..++...|.+++.+|..++..-.++ ++++++||.+.|++||+|.+....
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~ 171 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS 171 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence 4668999999999999999998887788999999999999887543333 588999999999999999874211
Q ss_pred --------CCCccchhHHHHHHHHhhcc------------CcccHHHHHHHHHhc
Q 027177 126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC 160 (227)
Q Consensus 126 --------~~d~~~t~~a~~~L~~~g~~------------~~~~~~~~~~~l~~~ 160 (227)
++++..|.+++.+|...+.. ....++++++||.+.
T Consensus 172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 12344566677777655531 123578999999886
No 30
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=99.17 E-value=1.9e-10 Score=114.71 Aligned_cols=201 Identities=13% Similarity=0.041 Sum_probs=128.9
Q ss_pred cHHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHh-ccCCCCCccC
Q 027177 5 AADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAG 73 (227)
Q Consensus 5 ~~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~-~q~~dGgf~~ 73 (227)
.+++++++|.. .|++||+|..|.+.+.+.|.|.|++..|..+... ++..++++++||.+ .|++||.|..
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 34567777654 4899999999987788999999999999988764 23357799999999 9999999854
Q ss_pred CCC--------C------CCChHHHHHHHHHHHhcccCCC-----CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177 74 NIG--------H------DPHVLYTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (227)
Q Consensus 74 ~~~--------~------~~~~~~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~ 134 (227)
... . ++++..|++++.+|...+.... ..+.++++||.+.... ..++.....
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~ 1190 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAI 1190 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHH
T ss_pred CccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHH
Confidence 211 0 0145567777777776543211 1246789999875321 111111122
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccC-CCC-----CcCCCCC---------C-CCchhhchHHHHHHHHhcCCCCCCH
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKN-LDG-----GFGCTPG---------G-ESHSGQIFCCVGALAIAGALHHVDK 198 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~-~dG-----Gf~~~~~---------~-~~~~~~T~~al~aL~~~g~~~~~~~ 198 (227)
+..+|.+.|... ...+.+++.|.+... .++ .|...+. . ..+...|+++|.+|...+. ...+
T Consensus 1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~ 1267 (1676)
T 3cu7_A 1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYV 1267 (1676)
T ss_dssp HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHH
Confidence 234555566532 114556677766443 222 4432210 1 1246788999999888763 2246
Q ss_pred HHHHHHHHccCccCCCcCCC
Q 027177 199 DLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 199 ~~~~~wL~~~Q~~~GGf~~~ 218 (227)
.+.++||+++|+.+|||.--
T Consensus 1268 ~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1268 NPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp HHHHHHHHHHSCSSSCCSTT
T ss_pred HHHHHHHHhccCCCCCcccc
Confidence 78899999999999999743
No 31
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.12 E-value=1.1e-10 Score=99.16 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcccCCCCcchhhcc--c------------------------------------chHHHHHHHHHHHHHhC
Q 027177 6 ADKHVKYIISVEKKKDSFESVVME--H------------------------------------LRLNGAYWGLTTLDILG 47 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~--~------------------------------------~~~~~~y~~l~~l~ll~ 47 (227)
..+..+.|...|++.|+|...... + .+.-.|.-++..|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 345668889999999999532110 0 11123545555565543
Q ss_pred CC----C----CcCHHHHHHHHHhccCCCCCccCCCCC----CCCh----HHHHHHHHHHHhcccC----C---------
Q 027177 48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGH----DPHV----LYTLSAVQVLALFDKV----D--------- 98 (227)
Q Consensus 48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~~~----~~T~~al~~L~~l~~~----~--------- 98 (227)
.. . ...++++++||++.|.++|||+.+.-. ..|+ ..|.-+|..|..+... .
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 22 1 124679999999999999999876421 1111 2566667767655431 0
Q ss_pred -CCCHHHHHHHHHhccCC-CCCcccCCCCCCC-----------------ccchhHHHHHHHHhhccC-c----ccHHHHH
Q 027177 99 -ILDADKVSNYIVGLQNE-DGSFSGDIWGEVD-----------------TRFSYIAICCLSILQRLD-K----INVDKAV 154 (227)
Q Consensus 99 -~~~~~~~~~~l~~~Q~~-dGg~~~~~~~~~d-----------------~~~t~~a~~~L~~~g~~~-~----~~~~~~~ 154 (227)
...++|+++||++.|.+ ||.|. .|+... ++..-.+...+.+++... . ..|++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~--rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av 320 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL--GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC--CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc--chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 11258899999999999 99987 333211 111112222334444422 1 2589999
Q ss_pred HHHHhccCCCCCcCC
Q 027177 155 EYIVSCKNLDGGFGC 169 (227)
Q Consensus 155 ~~l~~~Q~~dGGf~~ 169 (227)
+||.++|++||+|-.
T Consensus 321 ~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 321 AWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHSCCCC-----
T ss_pred HHHHHhhcCCCceee
Confidence 999999999999973
No 32
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.89 E-value=2.8e-10 Score=94.22 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=94.7
Q ss_pred HHHHHHcccCCCCcchhhc-------------ccchHHHHHHHHHHHHHhCCC--C---CcCHHHHHHHHHhccCCCCCc
Q 027177 10 VKYIISVEKKKDSFESVVM-------------EHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGF 71 (227)
Q Consensus 10 ~~yl~~~q~~dg~~~~~~~-------------~~~~~~~~y~~l~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf 71 (227)
-+.|...|++.|+|..... -..+.-.|.-++..|+-+... + ...++++++||++.|.++|||
T Consensus 37 Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGW 116 (332)
T 1gxm_A 37 ADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGAL 116 (332)
T ss_dssp HHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred HHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCc
Confidence 4667788999999964210 112223354566666554331 1 125679999999999999999
Q ss_pred cCCCCC----CCCh----HHHHHHHHHHHhccc----CC------------CCCHHHHHHHHHhccCCCCCcccCCCCCC
Q 027177 72 AGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWGEV 127 (227)
Q Consensus 72 ~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~ 127 (227)
+.+.-. ..++ ..|.-+|..|..+.. .+ ...++|+++||++.|.++|||-+ .|+..
T Consensus 117 pqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g-~Wg~q 195 (332)
T 1gxm_A 117 PQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLT-VWCAQ 195 (332)
T ss_dssp BSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSE
T ss_pred cccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcC-eeccc
Confidence 976321 1121 357777888877642 11 11258899999999999999875 34322
Q ss_pred CccchhH----------------HH-HHHHHhhccCcc----cHHHHHHHHHhccCC
Q 027177 128 DTRFSYI----------------AI-CCLSILQRLDKI----NVDKAVEYIVSCKNL 163 (227)
Q Consensus 128 d~~~t~~----------------a~-~~L~~~g~~~~~----~~~~~~~~l~~~Q~~ 163 (227)
+...|.. ++ ....+++....+ .|+++++||.++|++
T Consensus 196 ydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 196 HGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp ECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred cccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 2222221 12 222334443322 489999999999994
No 33
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.82 E-value=4.9e-08 Score=92.35 Aligned_cols=142 Identities=20% Similarity=0.164 Sum_probs=96.0
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW----- 124 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~----- 124 (227)
++++++++++.|++||||+.+++.+++.+.|.+++..|..+.....++ +.++++||.+ .|.+||+|.....
T Consensus 301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~ 380 (915)
T 2hr0_B 301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 380 (915)
T ss_dssp HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence 456788899999999999999888889999999999999887543444 5889999995 9999999975311
Q ss_pred ---C-----CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177 125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (227)
Q Consensus 125 ---~-----~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~ 189 (227)
+ ++++..|.+++.+|...|.. ....++++++||.+.+.. + .+++..+..-.+|.+
T Consensus 381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~---~-------~~~y~~a~layAL~l 450 (915)
T 2hr0_B 381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN---L-------QRSYTVAIAGYALAQ 450 (915)
T ss_dssp CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG---C-------CSHHHHHHHHHHHHT
T ss_pred hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHH
Confidence 0 12234455666777666542 133578899999987653 1 112222222224444
Q ss_pred hcCCCCCCHHHHHHHHHccC
Q 027177 190 AGALHHVDKDLLGWWLCERQ 209 (227)
Q Consensus 190 ~g~~~~~~~~~~~~wL~~~Q 209 (227)
+|.. .+.++..|.++.
T Consensus 451 ~g~~----a~~~l~~L~~~~ 466 (915)
T 2hr0_B 451 MGRL----KGPLLNKFLTTA 466 (915)
T ss_dssp TTCC----CHHHHHHHHHTS
T ss_pred cCCh----HHHHHHHHHhhc
Confidence 5532 456677776654
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.76 E-value=6e-08 Score=95.49 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=104.6
Q ss_pred HHHHHHHHHhccCCCCCccCCCC----CCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccC-CC-
Q 027177 54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGD-IW- 124 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~-~~- 124 (227)
++++++|++++|++||||+.+++ ..++.+.|.+++..|..+...-.++ ..++++||.+.|++||+|... ++
T Consensus 985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A 985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence 56788999999999999998864 4578999999999999887542232 688999999999999999842 11
Q ss_pred ------C-CCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCC--CCCcCCCCCCCCchhhchHHHHHHHHhcCCC
Q 027177 125 ------G-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNL--DGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (227)
Q Consensus 125 ------~-~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~--dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~ 194 (227)
+ +.++..|.+++.+|...|.. ....++++++||.+.... +|.- ..+++..+..-.||+++|..
T Consensus 1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~~- 1137 (1451)
T 4acq_A 1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGNQ- 1137 (1451)
T ss_dssp CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTCH-
T ss_pred chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCCh-
Confidence 1 23344577777888877763 245688999999875211 1211 13344444445556667642
Q ss_pred CCCHHHHHHHHHccCccCCC
Q 027177 195 HVDKDLLGWWLCERQVKSGG 214 (227)
Q Consensus 195 ~~~~~~~~~wL~~~Q~~~GG 214 (227)
...+.+++=|.+....+||
T Consensus 1138 -~~~~~~l~~L~~~a~~~~~ 1156 (1451)
T 4acq_A 1138 -DKRKEVLKSLNEEAVKKDN 1156 (1451)
T ss_dssp -HHHHHHHHHHHHHCCBCSS
T ss_pred -hHHHHHHHHHHHHhhccCC
Confidence 1234466667766666677
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.68 E-value=1.1e-07 Score=81.41 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCC-CC----CHHHHH----HH
Q 027177 38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-IL----DADKVS----NY 108 (227)
Q Consensus 38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~~----~~~~~~----~~ 108 (227)
+++.+|...+.. .....++.|+..|+. ++|. .+...++.+|..|+.+|..+.+.. .. .+++++ ++
T Consensus 141 L~vLALC~~g~~---v~~~~v~~Ll~~~~~-~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~ 214 (414)
T 2bb6_A 141 LGILALCVHQKR---VHDSVVGKLLYAVEH-KPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK 214 (414)
T ss_dssp HHHHHHHHTTCC---CCHHHHHHHHHHHHS-SSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---ccHHHHHHHHHHhhc-cCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence 455555555543 345577777776653 4443 223457888888999888876421 11 145555 78
Q ss_pred HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc---ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHH
Q 027177 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVG 185 (227)
Q Consensus 109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~---~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~ 185 (227)
|.+.|++||+|+ ++..|-.|+.+|...+..+. .+..+++++|++ |.+||+|. ++-.|+.+|.
T Consensus 215 l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lp 279 (414)
T 2bb6_A 215 ILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLP 279 (414)
T ss_dssp HHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHH
T ss_pred HHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHH
Confidence 888999999996 34668888888888876432 256789999999 99999997 3457777777
Q ss_pred HHH
Q 027177 186 ALA 188 (227)
Q Consensus 186 aL~ 188 (227)
+|.
T Consensus 280 aL~ 282 (414)
T 2bb6_A 280 VLN 282 (414)
T ss_dssp HTT
T ss_pred Hhc
Confidence 764
No 36
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.47 E-value=3.3e-07 Score=78.36 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccC-----cccHHHHH----HHH
Q 027177 87 AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAV----EYI 157 (227)
Q Consensus 87 al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~-----~~~~~~~~----~~l 157 (227)
++.+|...+. .+. .+.+..|...|. +++|.. .+..|+..+..|+.||..++... ...+++++ ++|
T Consensus 142 ~vLALC~~g~--~v~-~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l 215 (414)
T 2bb6_A 142 GILALCVHQK--RVH-DSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI 215 (414)
T ss_dssp HHHHHHHTTC--CCC-HHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--Ccc-HHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence 4444444333 333 446666666554 344431 11235666767777787776521 23356666 788
Q ss_pred HhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC---CCHHHHHHHHHccCccCCCcC
Q 027177 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 158 ~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
.+.|++||+|| +.+.|..|+.+|...+.... .+..++++||++ |.++|+|+
T Consensus 216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 88899999997 24559999999998876422 245678999998 99999997
No 37
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.41 E-value=5.9e-06 Score=82.65 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW----- 124 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~----- 124 (227)
++.+++-+++.|++||||+.+++.+++.+.|.+++..|..+.+.-.++ ..++++||.+ .|.++|.|.....
T Consensus 1048 i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~ 1127 (1661)
T 2b39_A 1048 IRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQE 1127 (1661)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTT
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechh
Confidence 334566677899999999999888889999999999999887654444 5789999995 9999999964211
Q ss_pred --------CCCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177 125 --------GEVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (227)
Q Consensus 125 --------~~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~ 189 (227)
.++++..|.+++.+|...|.. ....++++++||.+... + + .+++..+..-.+|.+
T Consensus 1128 ~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~-~--~-------~~~y~~A~layAL~l 1197 (1661)
T 2b39_A 1128 MIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYR-E--L-------RRPYTVAIAAYALAL 1197 (1661)
T ss_dssp SCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTT-T--C-------CSHHHHHHHHHHHHH
T ss_pred hcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhh-c--c-------CCHHHHHHHHHHHHH
Confidence 112444556667777665542 12356789999977532 1 1 223333333344555
Q ss_pred hcCCCCCCHHHHHHHHHccCc
Q 027177 190 AGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 190 ~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
+|.. .++++..|.+...
T Consensus 1198 ~g~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A 1198 LGKL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp TTCC----CHHHHHHHHHHSB
T ss_pred cCCc----HHHHHHHHHhhcc
Confidence 6543 4667777777654
No 38
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.31 E-value=1.4e-05 Score=74.18 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhCCC---CCc-------CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC-
Q 027177 33 LNGAYWGLTTLDILGKL---DAV-------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD- 101 (227)
Q Consensus 33 ~~~~y~~l~~l~ll~~~---~~~-------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~- 101 (227)
+.-..|++..|...+.. .+. .++++++-+++.|++||||+.+.+.+++.+.|.+++..|..+.....++
T Consensus 339 ~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~ 418 (767)
T 4fxk_B 339 LAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSP 418 (767)
T ss_dssp THHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCH
T ss_pred hhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcch
Confidence 33344677777766542 111 1445666677889999999999988899999999999999987765444
Q ss_pred --HHHHHHHHHhccCCCCCcccCCC--------C----CCCccchhHHHHHHHHhhccC------------cccHHHHHH
Q 027177 102 --ADKVSNYIVGLQNEDGSFSGDIW--------G----EVDTRFSYIAICCLSILQRLD------------KINVDKAVE 155 (227)
Q Consensus 102 --~~~~~~~l~~~Q~~dGg~~~~~~--------~----~~d~~~t~~a~~~L~~~g~~~------------~~~~~~~~~ 155 (227)
...++.||...|.+||.|..... + ..++..|.+++.+|...+... ...+.+++.
T Consensus 419 ~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~ 498 (767)
T 4fxk_B 419 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANS 498 (767)
T ss_dssp HHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHH
Confidence 56789999999999999975311 1 112344555666665544321 124678889
Q ss_pred HHHhccC
Q 027177 156 YIVSCKN 162 (227)
Q Consensus 156 ~l~~~Q~ 162 (227)
||.....
T Consensus 499 ~L~~~~~ 505 (767)
T 4fxk_B 499 FLGEKAS 505 (767)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9876543
No 39
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.26 E-value=1.7e-06 Score=73.60 Aligned_cols=115 Identities=14% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc---cC---------cccHHHH
Q 027177 86 SAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKA 153 (227)
Q Consensus 86 ~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~---~~---------~~~~~~~ 153 (227)
+++.+|++.-....+ ..+.+.-|...|+.||++ .++..+..|+.||..+.. .. ...++++
T Consensus 117 ~sL~vLALC~~~~~v-~~~~v~kLl~~~~~~g~~-------~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~ 188 (399)
T 2pmv_A 117 PSLAILALCQKNSEA-TLPIAVRFAKTLLANSSP-------FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI 188 (399)
T ss_dssp HHHHHHHHHHHCHHH-HHHHHHHHHHHHHHCCSC-------CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCc-------ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 355555554221122 355677777777777421 244455556666666654 11 2246778
Q ss_pred HHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CCCCHHHHHHHHHccCccCCCcC
Q 027177 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 154 ~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
+++|++.|++||+|| +.+.|..|+.||...+.. ..++..++++||++ |..+|+|+
T Consensus 189 ~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 189 VEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 899999999999997 478899999999999863 23478899999998 99999996
No 40
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.15 E-value=1.4e-05 Score=80.15 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=91.4
Q ss_pred HHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC--------
Q 027177 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-------- 124 (227)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~-------- 124 (227)
.++-+++.|++||||+.+.+..++.+.|.+++..|..+.+.-.++ ..++++||.+ .|.+||.|.....
T Consensus 1052 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~g 1131 (1676)
T 3cu7_A 1052 GMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQG 1131 (1676)
T ss_dssp HHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCS
T ss_pred HHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcC
Confidence 344456789999999999878889999999999999887644444 5789999999 9999999964211
Q ss_pred CC------CCccchhHHHHHHHHhhcc-----CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC
Q 027177 125 GE------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL 193 (227)
Q Consensus 125 ~~------~d~~~t~~a~~~L~~~g~~-----~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~ 193 (227)
+. +++..|.+++.+|...+.. ....+.++++||.+.... + .+++..+..-.+|.++|.
T Consensus 1132 g~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~- 1200 (1676)
T 3cu7_A 1132 TLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDK- 1200 (1676)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCT-
T ss_pred CcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCC-
Confidence 00 1333445566666555442 123567899999775321 1 222222222223333432
Q ss_pred CCCC-HHHHHHHHHccCccCC
Q 027177 194 HHVD-KDLLGWWLCERQVKSG 213 (227)
Q Consensus 194 ~~~~-~~~~~~wL~~~Q~~~G 213 (227)
... .++++..|.+....+|
T Consensus 1201 -~~~~a~~~l~~L~~~a~~~~ 1220 (1676)
T 3cu7_A 1201 -THPQFRSIVSALKREALVKG 1220 (1676)
T ss_dssp -TCHHHHHHHHHHHHHCEEET
T ss_pred -chhhHHHHHHHHHhhhhhcc
Confidence 222 5677788887665333
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.14 E-value=4.9e-06 Score=70.78 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhccc---CC-C------C--CHHHH
Q 027177 38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD-I------L--DADKV 105 (227)
Q Consensus 38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~-~------~--~~~~~ 105 (227)
+++..|++.-... ......++-|...|+.||+ .-++..++.|+.+|..+.+ .. . + -++++
T Consensus 117 ~sL~vLALC~~~~-~v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~ 188 (399)
T 2pmv_A 117 PSLAILALCQKNS-EATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI 188 (399)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 5555555543321 2466777888888877742 2357777778888877755 11 0 1 14678
Q ss_pred HHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHH
Q 027177 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183 (227)
Q Consensus 106 ~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~a 183 (227)
+++|.+.|++||+|+ ++..|--|+.+|...+.. ...+..++.++|++ |..||+|+ ++-.|+..
T Consensus 189 ~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQi 253 (399)
T 2pmv_A 189 VEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQI 253 (399)
T ss_dssp HHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHH
T ss_pred HHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHH
Confidence 899999999999996 456677778888877762 22267889999999 89999997 34567777
Q ss_pred HHHHHH
Q 027177 184 VGALAI 189 (227)
Q Consensus 184 l~aL~~ 189 (227)
|-+|.-
T Consensus 254 lPaL~~ 259 (399)
T 2pmv_A 254 LPSLKG 259 (399)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777643
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.60 E-value=8.9e-06 Score=80.89 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC-CC---HHHHHHHHHh-ccCCCCCcccCC-----
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVG-LQNEDGSFSGDI----- 123 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~-~Q~~dGg~~~~~----- 123 (227)
++..++-+++.|++||||+.+.+.+++.+.|++++..|..+.+.-. +| +.++++||.+ .|++||.|....
T Consensus 1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B 1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence 4456666777899999999987777889999999999988765422 33 6789999998 899999997531
Q ss_pred ---CC----CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhc
Q 027177 124 ---WG----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC 160 (227)
Q Consensus 124 ---~~----~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~ 160 (227)
++ +.++.-|.+++.+|...+.. ....+++++.||.+.
T Consensus 1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ---------------------------------------------------
T ss_pred hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 11 23555666666666554432 133678899999764
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.27 E-value=0.087 Score=48.35 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHhccCCCC-CcCCCCCCCCchhhchHHHHHHHHhcCCCC
Q 027177 148 INVDKAVEYIVSCKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHH 195 (227)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dG-Gf~~~~~~~~~~~~T~~al~aL~~~g~~~~ 195 (227)
..|+.+.++|-++...+| +|. ......|+..|+-+.-.|...|..-+
T Consensus 266 ~EI~~~L~~i~~~~~~~g~~~~-~~~~~~DL~~tAL~FRLLRqhGy~VS 313 (727)
T 3pya_A 266 EEIKECLDYVHRYWTDNGICWA-RCSHVQDIDDTAMAFRLLRQHGYQVS 313 (727)
T ss_dssp HHHHHHHHHHHHTCCTTCCCSS-SSCSCCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhhcCcccc-cCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence 357778888877644333 232 11234789999999999999997533
No 44
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.95 E-value=0.013 Score=54.48 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHHHHHHccc---CCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCC--
Q 027177 7 DKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHD-- 78 (227)
Q Consensus 7 ~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~-- 78 (227)
++.++-|++..+ .||.++.. ..+..-|.| ++++... .......+++||+..|.+||+|+......
T Consensus 57 ~~Lie~VK~~l~~~~~~g~~g~~---S~S~YDTAW----VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~ 129 (817)
T 3sdr_A 57 EVLVSEIKAMLNPAITGDGESMI---TPSAYDTAW----VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLS 129 (817)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCC---CCCHHHHHH----HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHH
T ss_pred HHHHHHHHHHhccccCCCCCccc---ccCHHHhhH----HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchH
Confidence 344555555543 45522211 223445667 4455433 23456799999999999999998643211
Q ss_pred CChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhc
Q 027177 79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGL 112 (227)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (227)
.-+.+|.+|+.+|..-+.. ...+++++.||++.
T Consensus 130 d~ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 130 DRLLATLSCVLVLLKWNVG-DLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 1378999999888764321 12367788888775
No 45
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.86 E-value=0.0053 Score=57.14 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 146 DKINVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 146 ~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
..+....+++||++.|.+||+||...... . -...|..+|.||..-+. .+..+++++.||.++
T Consensus 99 ~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 99 ARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSN 162 (817)
T ss_dssp SSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 34556789999999999999999533211 1 24567778888877542 233578899999875
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=95.51 E-value=0.0076 Score=55.83 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHhccCCCCCcCCCCC-CCCc-hhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 147 KINVDKAVEYIVSCKNLDGGFGCTPG-GESH-SGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~~~-~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.+....+++||++.|.+||+||.... ...| ...|..+|.||..-+. .+..+++++.||.++
T Consensus 73 ~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 73 NPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-GETQVQKGIEFFRTQ 135 (785)
T ss_dssp SBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence 44567899999999999999996422 1123 5678888888877542 233578899999765
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=95.18 E-value=0.033 Score=51.62 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC-C-hHHHHHHHHHHHhcccCCCCCHHHHH
Q 027177 32 RLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP-H-VLYTLSAVQVLALFDKVDILDADKVS 106 (227)
Q Consensus 32 ~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~-~-~~~T~~al~~L~~l~~~~~~~~~~~~ 106 (227)
+..-|.| .+++... .......+++||+..|.+||+|+....... + +.+|.+|+.+|..-+... ..+++++
T Consensus 55 S~YDTAW----Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~-~~i~~Gl 129 (785)
T 3s9v_A 55 SAYDTAW----VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE-TQVQKGI 129 (785)
T ss_dssp CHHHHHH----HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHH
T ss_pred cHHHhhH----HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH-HHHHHHH
Confidence 3445667 3444332 223567999999999999999986432111 2 789999999887643211 2367888
Q ss_pred HHHHhc
Q 027177 107 NYIVGL 112 (227)
Q Consensus 107 ~~l~~~ 112 (227)
.||++.
T Consensus 130 ~fl~~n 135 (785)
T 3s9v_A 130 EFFRTQ 135 (785)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 48
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=94.98 E-value=0.037 Score=51.18 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCCCC--ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhcc
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGHDP--HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~--~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q 113 (227)
.-..+++||+..|.+||+|+....... -+.+|.+|+.+|..-+.. ...+++++.||.+.-
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG-HSQVQQGAEFIAENL 115 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 577899999999999999986432111 378999999888764321 123678888887653
No 49
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=94.73 E-value=0.021 Score=52.35 Aligned_cols=60 Identities=18% Similarity=0.063 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 148 INVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
+....+++||++.|.+||+||....-. . -...|..+|.||..-+. .+..+++++.||.++
T Consensus 50 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 50 PAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-FPHQCNKGITFFREN 111 (727)
T ss_dssp BSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 345789999999999999999532111 1 24568888888876442 233578899999775
No 50
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=94.59 E-value=0.024 Score=52.38 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 147 KINVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.+....+++||++.|.+||+||...... . -...|..+|.||..-+. .+..+++++.||.++
T Consensus 52 ~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 52 KPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAEN 114 (764)
T ss_dssp EESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 3456789999999999999999532211 1 24567778888777442 233578899998765
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=89.54 E-value=2.5 Score=36.53 Aligned_cols=164 Identities=12% Similarity=0.032 Sum_probs=82.4
Q ss_pred CHHHHHHHHHhcc--CCCCCccCCCCCCC--ChHHHHHHHHHHHhcccCCC-C---CHHHH----HHHHHhccCC-CCCc
Q 027177 53 DEEDVISWILKCQ--DESGGFAGNIGHDP--HVLYTLSAVQVLALFDKVDI-L---DADKV----SNYIVGLQNE-DGSF 119 (227)
Q Consensus 53 ~~~~~i~~l~~~q--~~dGgf~~~~~~~~--~~~~T~~al~~L~~l~~~~~-~---~~~~~----~~~l~~~Q~~-dGg~ 119 (227)
...+..+||.+.+ .++|||.-...... .+...+.++-.|..+..... . -.+.+ ..+.+.++.+ +|-|
T Consensus 169 ~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~ 248 (445)
T 3k11_A 169 LIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLY 248 (445)
T ss_dssp HHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEE
T ss_pred HHHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCE
Confidence 3456778998877 56899876533222 23344455555554433211 0 02222 2233344444 3544
Q ss_pred ccC---CCCCCC----ccchhHHHHHHH-HhhccC---c------ccHHHHHHHHHhccCCCCCcCCCCCC---CCchhh
Q 027177 120 SGD---IWGEVD----TRFSYIAICCLS-ILQRLD---K------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQ 179 (227)
Q Consensus 120 ~~~---~~~~~d----~~~t~~a~~~L~-~~g~~~---~------~~~~~~~~~l~~~Q~~dGGf~~~~~~---~~~~~~ 179 (227)
.-. ..+..+ .|---|++.++. .+..++ . ...++.++.+.++|.+||.|...... ..+.+.
T Consensus 249 ~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSa 328 (445)
T 3k11_A 249 RHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSA 328 (445)
T ss_dssp CSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHH
T ss_pred eeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccH
Confidence 311 000111 122223333332 222211 1 23467888999999999999875432 223333
Q ss_pred chHHHHHH---HHhcCCCC----CCHHHHHHHHHccCccCCCcC
Q 027177 180 IFCCVGAL---AIAGALHH----VDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 180 T~~al~aL---~~~g~~~~----~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
|+....+| +..|.++. ..++++.+-|.++.+++|-..
T Consensus 329 TAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 329 TAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 33333333 34555532 235778889998888887543
No 52
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=76.49 E-value=4.6 Score=34.03 Aligned_cols=69 Identities=7% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCCCCCcCCCCCC---CCchhhchHHHHHHH---HhcCCCC---CCHHHHHHHHHccCccCCCcCCC
Q 027177 150 VDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQIFCCVGALA---IAGALHH---VDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 150 ~~~~~~~l~~~Q~~dGGf~~~~~~---~~~~~~T~~al~aL~---~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
.++.+++++++|.+||.|...... ..+.+.|+....+|. ..|.++. ..++++.+-|.++..++|-..+-
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 457888999999999999865432 234444444444433 3344432 13678899999988888866443
No 53
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.00 E-value=4.7 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG 214 (227)
.|..||...+. +++++++||-++..+..|
T Consensus 35 qA~kALKat~~----NvErAaDWLFSH~D~~~~ 63 (63)
T 1wgn_A 35 CVLRAMKKKGE----NIEQILDYLFAHSGPSSG 63 (63)
T ss_dssp HHHHHHHHHCS----CHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCCCCC
Confidence 56777777663 599999999999866543
No 54
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.60 E-value=5.2 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCCC
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDG 165 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dG 165 (227)
|..+|...+. +++++++||-++..|.-
T Consensus 36 A~kALKat~~----NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 36 VLRAMKKKGE----NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHCS----CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcCC----CHHHHHHHHHhCCCCCC
Confidence 4455554443 79999999999887654
No 55
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=57.02 E-value=17 Score=30.22 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccCC-CCCcCCC---C---CCCCchhhchHHHHHHHH---hcCCCC---CCHHHHHHHHHcc---CccCC
Q 027177 150 VDKAVEYIVSCKNL-DGGFGCT---P---GGESHSGQIFCCVGALAI---AGALHH---VDKDLLGWWLCER---QVKSG 213 (227)
Q Consensus 150 ~~~~~~~l~~~Q~~-dGGf~~~---~---~~~~~~~~T~~al~aL~~---~g~~~~---~~~~~~~~wL~~~---Q~~~G 213 (227)
.++..+++.++|.+ ||.|... | +...+.+.|+....+|.. .|.++. ..++++.+.|.++ ..++|
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG 322 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDG 322 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTS
T ss_pred HHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCC
Confidence 45678899999997 9998732 2 222344444444444443 355432 2267788888774 45677
Q ss_pred Cc
Q 027177 214 GL 215 (227)
Q Consensus 214 Gf 215 (227)
-.
T Consensus 323 ~l 324 (373)
T 1nc5_A 323 AF 324 (373)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 56
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=55.02 E-value=16 Score=22.57 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.1
Q ss_pred cHHHHHHHHHhccCCCC
Q 027177 149 NVDKAVEYIVSCKNLDG 165 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dG 165 (227)
+++++++||.+.+..+|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 68999999999876544
No 57
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.80 E-value=16 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCcc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~ 211 (227)
-+..||...+. .+++++++||++++..
T Consensus 35 ~a~~AL~~t~~---~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 35 RAQKALASTGG---RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHTTT---SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHhCCCC
Confidence 34556655542 3699999999998853
No 58
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=52.83 E-value=82 Score=26.22 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHhCCCCC--------cCHHHHHHHHHhccCCCCCccCCCCCC-CChHHHHHHHHHHHhcc-----cC
Q 027177 32 RLNGAYWGLTTLDILGKLDA--------VDEEDVISWILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFD-----KV 97 (227)
Q Consensus 32 ~~~~~y~~l~~l~ll~~~~~--------~~~~~~i~~l~~~q~~dGgf~~~~~~~-~~~~~T~~al~~L~~l~-----~~ 97 (227)
.-|.+|-.+.++..+..+.. ...++.+++|+++|.+||-|......+ +...++.+|+.+-+++. -+
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 33555555555665433211 135588899999999999887544322 22344444444433331 12
Q ss_pred CC--C-CHHHHHHHHHhccCCCCCcccC
Q 027177 98 DI--L-DADKVSNYIVGLQNEDGSFSGD 122 (227)
Q Consensus 98 ~~--~-~~~~~~~~l~~~Q~~dGg~~~~ 122 (227)
+. . -.+++.+-|.+..++||-....
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 11 1 1477888898888889876543
No 59
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.69 E-value=57 Score=27.97 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhCCCCC------cCHHHHHHHHHhccCCCCCccCCCCCC-CChHHHHHHHHHHHhcc-----cCCC
Q 027177 32 RLNGAYWGLTTLDILGKLDA------VDEEDVISWILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFD-----KVDI 99 (227)
Q Consensus 32 ~~~~~y~~l~~l~ll~~~~~------~~~~~~i~~l~~~q~~dGgf~~~~~~~-~~~~~T~~al~~L~~l~-----~~~~ 99 (227)
.-|.++-.+.+|..+....+ ...++.++.|+++|.++|.|......+ +...++.+|+.+-.++. -++.
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 34555555555555543211 135578899999999999887644322 22344444444433331 1211
Q ss_pred ----CCHHHHHHHHHhccCCCCCcc
Q 027177 100 ----LDADKVSNYIVGLQNEDGSFS 120 (227)
Q Consensus 100 ----~~~~~~~~~l~~~Q~~dGg~~ 120 (227)
.-.+++.+-|.+..++||-..
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 013668888888878888654
No 60
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.76 E-value=21 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCC
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~d 164 (227)
+..+|...+. +++++++||+..+.|+
T Consensus 46 a~~AL~~~~~----nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD----DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS----CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC----CHHHHHHHHHHCCCCC
Confidence 4455554443 6899999999987765
No 61
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.74 E-value=21 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=14.0
Q ss_pred cHHHHHHHHHhccCCCC
Q 027177 149 NVDKAVEYIVSCKNLDG 165 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dG 165 (227)
+++++++||.+.+.++-
T Consensus 57 nve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 57 DIHAAIEMLLGASGPSS 73 (74)
T ss_dssp CHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 68999999998876653
No 62
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.36 E-value=17 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
.+..||...+. .+++++++||++++.
T Consensus 25 ~a~~AL~~t~n---~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 25 TALKALAATGR---KTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHhCCC
Confidence 45677777654 368999999999985
No 63
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.03 E-value=18 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.+..||...+ +++++++||.++
T Consensus 25 ~a~~AL~~~~-----n~e~A~~~L~~h 46 (47)
T 2ekk_A 25 HAMEALLNTS-----TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHSC-----SHHHHHHHHHTC
T ss_pred HHHHHHHHcC-----CHHHHHHHHHcC
Confidence 3456666553 589999999876
No 64
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.17 E-value=24 Score=22.05 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCcc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~ 211 (227)
-+..||...+. +++++++||.+++..
T Consensus 45 ~a~~AL~~t~~----nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 45 VARKALKASGG----DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHTTS----CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhCC----CHHHHHHHHHhCCCC
Confidence 34566666552 699999999998853
No 65
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=45.51 E-value=30 Score=28.75 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCC------CCccCCCCCCCChHHHHHHHHHHHhc
Q 027177 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDES------GGFAGNIGHDPHVLYTLSAVQVLALF 94 (227)
Q Consensus 36 ~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~d------Ggf~~~~~~~~~~~~T~~al~~L~~l 94 (227)
.++++.++..+...+....+++++-+...|..| |||+...+...|...-+.+|.+....
T Consensus 284 g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~~~ 348 (350)
T 3ren_A 284 SIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQKY 348 (350)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHHhh
Confidence 457777776665445557888999999988776 78877655566777777677666543
No 66
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=43.96 E-value=80 Score=26.05 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCC-CCCcccC--CCC----CCCccchhHHHHHH-HHh--hccC---cccHHHHHHHHHhc---cCCCCC
Q 027177 103 DKVSNYIVGLQNE-DGSFSGD--IWG----EVDTRFSYIAICCL-SIL--QRLD---KINVDKAVEYIVSC---KNLDGG 166 (227)
Q Consensus 103 ~~~~~~l~~~Q~~-dGg~~~~--~~~----~~d~~~t~~a~~~L-~~~--g~~~---~~~~~~~~~~l~~~---Q~~dGG 166 (227)
+++++++.+.|.+ ||-|... +.. ..+.+.|...+.+| ..+ |.++ ....+++.+.|.+. .++||-
T Consensus 244 ~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 244 QDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 6678899999997 8988732 111 12333333323222 222 3222 33567888888773 477884
Q ss_pred c
Q 027177 167 F 167 (227)
Q Consensus 167 f 167 (227)
.
T Consensus 324 l 324 (373)
T 1nc5_A 324 F 324 (373)
T ss_dssp E
T ss_pred E
Confidence 3
No 67
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.53 E-value=29 Score=20.22 Aligned_cols=25 Identities=24% Similarity=0.023 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHccCcc
Q 027177 183 CVGALAIAGALHHVDKDLLGWWLCERQVK 211 (227)
Q Consensus 183 al~aL~~~g~~~~~~~~~~~~wL~~~Q~~ 211 (227)
++.||...+ -+++++++||.+....
T Consensus 27 n~~AL~~~~----Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATG----GDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHT----SCHHHHHHHHHHHSCS
T ss_pred HHHHHHHcC----CCHHHHHHHHHhCCCc
Confidence 356666554 3599999999987643
No 68
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=42.93 E-value=26 Score=20.30 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccC
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQ 209 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q 209 (227)
.++.||...+. +++++++||.+++
T Consensus 28 ~~~~AL~~t~g----nve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATGG----DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTS----CHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC----CHHHHHHHHHHcC
Confidence 45677777663 5999999999865
No 69
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=41.13 E-value=39 Score=28.23 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred HHHHHH-HHhccCCCCCcccC--CCCCC---CccchhHH---HHHHH----HhhccC-cccHHHHHHHHHh-ccCCC-CC
Q 027177 103 DKVSNY-IVGLQNEDGSFSGD--IWGEV---DTRFSYIA---ICCLS----ILQRLD-KINVDKAVEYIVS-CKNLD-GG 166 (227)
Q Consensus 103 ~~~~~~-l~~~Q~~dGg~~~~--~~~~~---d~~~t~~a---~~~L~----~~g~~~-~~~~~~~~~~l~~-~Q~~d-GG 166 (227)
++++.| +...+.++|||... ..+.+ ....++.. +.+++ ++|... ....+++++||.+ +.+++ ||
T Consensus 16 ~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~~Gg 95 (402)
T 3gt5_A 16 SDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGG 95 (402)
T ss_dssp HHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTTTSC
T ss_pred HHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCCCCc
Confidence 556665 45667778999743 12221 11233321 12222 223321 1235678999987 45666 99
Q ss_pred cCCCC--CC----CCchhhchHHHHHHHHhcCCCCCC----HHHHHHHHHccC-c-cCCCcC
Q 027177 167 FGCTP--GG----ESHSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQ-V-KSGGLN 216 (227)
Q Consensus 167 f~~~~--~~----~~~~~~T~~al~aL~~~g~~~~~~----~~~~~~wL~~~Q-~-~~GGf~ 216 (227)
|..+. +. ..+.+.-++++.||........+. .+++.++|.++- . ..|||.
T Consensus 96 ~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 96 YAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp BCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred EEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 87653 11 123333344444444322222222 455666776663 2 346654
No 70
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.94 E-value=29 Score=20.98 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
.+..||...+. .++++++.||++++.
T Consensus 25 ~a~~AL~~t~~---~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 25 RAEKALALTGN---QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHhCCC
Confidence 45677777642 358999999999874
No 71
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.08 E-value=29 Score=21.68 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
.+..||...+. .+++++++||++++.
T Consensus 25 ~a~~AL~~t~n---~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 25 ACRKAVYYTGN---SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHhCCC
Confidence 45666666653 358999999999875
No 72
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.62 E-value=40 Score=20.31 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=18.1
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCC
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~d 164 (227)
+..+|...+. +++++++||.+.+.+.
T Consensus 26 a~~AL~~~~~----nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 26 SRQALMDNGN----NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHTTS----CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhCC----CHHHHHHHHHHCCCCc
Confidence 3455655443 6899999999877543
No 73
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=36.55 E-value=26 Score=17.36 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=14.5
Q ss_pred cCCCcCCCCCCCCCCC
Q 027177 211 KSGGLNGRPEKLPDVV 226 (227)
Q Consensus 211 ~~GGf~~~~~k~~D~c 226 (227)
.+|||---|.|..|-|
T Consensus 5 enggfcpdpekmgdwc 20 (32)
T 4b2v_A 5 ENGGFCPDPEKMGDWC 20 (32)
T ss_dssp CTTCBCCCTTTTCCCC
T ss_pred hcCCcCCChHHhcchh
Confidence 5899999999999987
No 74
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.63 E-value=21 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
.+..||...+. +++++++||.+++.
T Consensus 25 ~a~~AL~~t~~----nve~A~e~L~~~~~ 49 (63)
T 2dak_A 25 QALKALRATNN----SLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHTTS----CSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCC
Confidence 34566666543 48999999999864
No 75
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=33.48 E-value=47 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
-++.||...+ .+++++++||.++
T Consensus 20 ~a~~AL~~~~----~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 20 EAHNALEKCN----WDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHT----SCHHHHHHHHHTC
T ss_pred HHHHHHHHhC----cCHHHHHHHHHcC
Confidence 4566777665 3589999999864
No 76
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.25 E-value=39 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
.+..||...+. .+++++++||.+++.
T Consensus 45 ~a~~AL~~t~n---~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 45 HCQKAAINTSN---AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHTTT---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHhCCC
Confidence 45666665542 368999999999874
No 77
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.60 E-value=74 Score=18.58 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG 214 (227)
.|..||...|. ..++.+++||.+.-+++.|
T Consensus 25 rae~Alk~Tg~---~Gle~AmewL~k~~~~~~~ 54 (54)
T 2cos_A 25 MAGRALKQTGS---RSIEAALEYISKMSGPSSG 54 (54)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHhCc---ccHHHHHHHHHHhcCCCCC
Confidence 45566666664 4589999999988777654
No 78
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.19 E-value=1e+02 Score=19.73 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHccCc-------cCCCcCCCCCCCC
Q 027177 196 VDKDLLGWWLCERQV-------KSGGLNGRPEKLP 223 (227)
Q Consensus 196 ~~~~~~~~wL~~~Q~-------~~GGf~~~~~k~~ 223 (227)
.+++++++||.++.. ..|-|+.-.+|.+
T Consensus 47 ~n~e~A~ewL~~h~~D~D~~~~~~~d~n~~~~~~~ 81 (85)
T 2dkl_A 47 MNLDQAMSALLEKKVDVDKRGLGVTDHNGMAAKSG 81 (85)
T ss_dssp SCHHHHHHHHHTTSCCSSCCCCTTCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHCcCCcccccCCcchhhhhccCCC
Confidence 468999999999864 3355665555544
No 79
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.94 E-value=40 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
-|..||...+ -+++++++||.+++.
T Consensus 45 ~A~~AL~~t~----gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 45 VAEAALRVFG----GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHTT----TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHcC----CCHHHHHHHHHhCCC
Confidence 3455665554 359999999999874
No 80
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=29.74 E-value=51 Score=18.89 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.++.||...+. +++++++||.++
T Consensus 29 ~~~~AL~~t~g----n~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGG----DINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHTTC
T ss_pred HHHHHHHHhCC----CHHHHHHHHHhC
Confidence 45666666653 589999999764
No 81
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=28.90 E-value=58 Score=22.35 Aligned_cols=61 Identities=7% Similarity=0.175 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHccc-CCCCcchh---------hcccchHHHHHHHHHHHHHhCCC----------CCcCHHHHHHHHHhc
Q 027177 5 AADKHVKYIISVEK-KKDSFESV---------VMEHLRLNGAYWGLTTLDILGKL----------DAVDEEDVISWILKC 64 (227)
Q Consensus 5 ~~~~~~~yl~~~q~-~dg~~~~~---------~~~~~~~~~~y~~l~~l~ll~~~----------~~~~~~~~i~~l~~~ 64 (227)
|.+++++||...+. .+-+|..- .......+...-.+..|.-+|.. ...+++++++||.++
T Consensus 35 ~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 35 NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 78899999998753 22233210 00011112222345556556653 135899999999876
Q ss_pred c
Q 027177 65 Q 65 (227)
Q Consensus 65 q 65 (227)
-
T Consensus 115 ~ 115 (118)
T 4ae4_A 115 A 115 (118)
T ss_dssp C
T ss_pred c
Confidence 3
No 82
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.85 E-value=66 Score=20.56 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~~Q~ 210 (227)
-+..||...+ .+++++++||.+++.
T Consensus 45 ~a~~AL~~t~----~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 45 RATKALQLNH----MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHCCC
Confidence 4456666553 369999999999875
No 83
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.84 E-value=72 Score=17.75 Aligned_cols=22 Identities=23% Similarity=-0.114 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHc
Q 027177 182 CCVGALAIAGALHHVDKDLLGWWLCE 207 (227)
Q Consensus 182 ~al~aL~~~g~~~~~~~~~~~~wL~~ 207 (227)
.++.||...+ -+++++++||.+
T Consensus 24 ~~~~AL~~~~----gnv~~Ave~L~~ 45 (46)
T 2bwb_A 24 RNVAALRRSG----GSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHC
T ss_pred HHHHHHHHhC----CCHHHHHHHHHc
Confidence 3467777665 358999999975
No 84
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=26.16 E-value=1.2e+02 Score=24.99 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCC-CccCC-----C---CCCCChHHHHHHH-HHHHhccc
Q 027177 30 HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESG-GFAGN-----I---GHDPHVLYTLSAV-QVLALFDK 96 (227)
Q Consensus 30 ~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dG-gf~~~-----~---~~~~~~~~T~~al-~~L~~l~~ 96 (227)
...+..+||.+.++..+.... ....++.++.|.+-.-+|+ +|... . +.+..+ .|.-++ ..|.+...
T Consensus 166 ~~~ln~SY~~~~a~~~f~~~~~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~v-n~iDalrv~L~La~~ 244 (350)
T 3ren_A 166 GNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENV-DFLLSTIVILNRIEA 244 (350)
T ss_dssp CSEEEGGGCCHHHHHHHHHHCTHHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEE-EHHHHHHHHHHHHHT
T ss_pred CCEeehHhcCHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCccccccc-chHHHHHHHHHHHhc
Confidence 344556777777777665422 1245678888877433442 33321 0 011112 121222 33332211
Q ss_pred CCCCCHHHHHHHHHhccCCCC----CcccCCCC--CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCC------
Q 027177 97 VDILDADKVSNYIVGLQNEDG----SFSGDIWG--EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD------ 164 (227)
Q Consensus 97 ~~~~~~~~~~~~l~~~Q~~dG----g~~~~~~~--~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~d------ 164 (227)
. .+.....+|++..-..+| .+....+. ....+..+.|++++..+..-+.+-.+.+++-+..-|.+|
T Consensus 245 -g-~~~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yy 322 (350)
T 3ren_A 245 -G-ENEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLY 322 (350)
T ss_dssp -T-CCCHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTT
T ss_pred -C-CCcHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccC
Confidence 1 123445888885322133 22211111 112344556666666554334455677888888877766
Q ss_pred CCcCCCCCCCCchhhchHHHHHHHH
Q 027177 165 GGFGCTPGGESHSGQIFCCVGALAI 189 (227)
Q Consensus 165 GGf~~~~~~~~~~~~T~~al~aL~~ 189 (227)
|||+.......| .|=-|.+|..
T Consensus 323 GG~~~~~~~~~~---sfdNL~~LlA 344 (350)
T 3ren_A 323 GGFGDEKTNSVY---SFDNLNALLA 344 (350)
T ss_dssp TSCSBTTTTBCB---HHHHHHHHHH
T ss_pred CcccccCCCcee---eeccHHHHHH
Confidence 888865444444 3334444443
No 85
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=26.05 E-value=45 Score=27.40 Aligned_cols=62 Identities=8% Similarity=-0.044 Sum_probs=35.4
Q ss_pred cHHHHHHHHHhc-cCCCCCcCCCC--CC-----CCchhhchHHHHHHHHhcCC-CCC----CHHHHHHHHHccCc
Q 027177 149 NVDKAVEYIVSC-KNLDGGFGCTP--GG-----ESHSGQIFCCVGALAIAGAL-HHV----DKDLLGWWLCERQV 210 (227)
Q Consensus 149 ~~~~~~~~l~~~-Q~~dGGf~~~~--~~-----~~~~~~T~~al~aL~~~g~~-~~~----~~~~~~~wL~~~Q~ 210 (227)
..+++++||++. ++++|||.... .+ ..+.+.-++++.+|..+... ..+ ...++.+++.++..
T Consensus 78 ~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~ 152 (388)
T 2gz6_A 78 IARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKD 152 (388)
T ss_dssp HHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 357789999885 78899998652 11 23344444555665543221 111 24667778888764
No 86
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=25.71 E-value=68 Score=18.95 Aligned_cols=22 Identities=23% Similarity=-0.096 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 183 CVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 183 al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
++.||...+ -+++++++||.+.
T Consensus 35 ~~~AL~~~~----gnve~Ave~L~~~ 56 (58)
T 1wr1_B 35 NVAALRRSG----GSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHT----SCHHHHHHHHHHT
T ss_pred HHHHHHHhC----CCHHHHHHHHHhC
Confidence 456666554 3589999999874
No 87
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=23.08 E-value=61 Score=29.33 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=26.7
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177 180 IFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 180 T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
+++.+.+|..+|.++ ..++.++||.+.|.++|+|.
T Consensus 345 ~~~~~~al~~~G~~~--~a~~~l~~l~~~q~~~G~~~ 379 (684)
T 1lf6_A 345 LYHVANAFIAAGDVD--SANRSLDYLAKVVKDNGMIP 379 (684)
T ss_dssp HHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHhhcCCCCCcc
Confidence 355677777777543 37889999999999999874
No 88
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=21.73 E-value=1.7e+02 Score=23.96 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=16.1
Q ss_pred cHHHHHHHHHhc-cCCCC--CcCCC
Q 027177 149 NVDKAVEYIVSC-KNLDG--GFGCT 170 (227)
Q Consensus 149 ~~~~~~~~l~~~-Q~~dG--Gf~~~ 170 (227)
..+++++||.+. +.++| ||..+
T Consensus 83 ~A~~~~~fl~~~~~d~~gg~g~~~s 107 (402)
T 1fp3_A 83 AAKAGGEFLLRHARVAPPEKKCAFV 107 (402)
T ss_dssp HHHHHHHHHHHHTBSSTTSCCBCSE
T ss_pred HHHHHHHHHHHhccCcCCCCceEEE
Confidence 457789999885 66665 78765
No 89
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.64 E-value=62 Score=18.22 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=14.0
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHh
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVS 159 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~ 159 (227)
+..+|...+. ++++|++||.+
T Consensus 25 a~~AL~~~~~----n~e~A~e~L~~ 45 (49)
T 1ify_A 25 VVAALRASYN----NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHTTTS----CSHHHHHHHHH
T ss_pred HHHHHHHhCC----CHHHHHHHHHh
Confidence 3455554432 57899999987
No 90
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=20.54 E-value=89 Score=28.27 Aligned_cols=72 Identities=6% Similarity=-0.055 Sum_probs=41.8
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCC--CCCC-----CchhhchHHHHHHHHhcCCCC-CC-HHHHHHHH
Q 027177 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT--PGGE-----SHSGQIFCCVGALAIAGALHH-VD-KDLLGWWL 205 (227)
Q Consensus 135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~--~~~~-----~~~~~T~~al~aL~~~g~~~~-~~-~~~~~~wL 205 (227)
++.+|..+|. ....++.++||.+.|.++|+|... +.++ .....+..-+.++..+..... .. ++++++|+
T Consensus 348 ~~~al~~~G~--~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g~~~~~v~~al~~i 425 (684)
T 1lf6_A 348 VANAFIAAGD--VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFI 425 (684)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4445555564 334677899999999999987432 1111 223334444444433332212 34 89999999
Q ss_pred Hcc
Q 027177 206 CER 208 (227)
Q Consensus 206 ~~~ 208 (227)
.+.
T Consensus 426 ~~~ 428 (684)
T 1lf6_A 426 IKI 428 (684)
T ss_dssp HHH
T ss_pred HHh
Confidence 886
Done!