BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027179
(227 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera]
gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 186/230 (80%), Gaps = 12/230 (5%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QF
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQF 228
>gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera]
Length = 408
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 186/230 (80%), Gaps = 12/230 (5%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QF
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQF 228
>gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa]
gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/238 (69%), Positives = 191/238 (80%), Gaps = 17/238 (7%)
Query: 3 VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
+SSSPI SP ++ SS+S NL LF+ +KP + + +++ SYK SG GLTS
Sbjct: 2 AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59
Query: 57 EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
EDKK L ++YGLDP++F S+PS KT+RRKE GRG ++ D + + +RTTHR
Sbjct: 60 EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQF
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQF 237
>gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 315
Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 165/206 (80%), Gaps = 5/206 (2%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQF 225
E TGF DVS IHT+RVE F+ERA+Q
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQL 227
>gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 313
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 165/206 (80%), Gaps = 5/206 (2%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQF 225
E TGF DVS IHT+RVE F+ERA+Q
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQL 227
>gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 143/235 (60%), Positives = 166/235 (70%), Gaps = 17/235 (7%)
Query: 1 MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
M+V+ SSPI+SP + +S +S + LF S I R ++ SGTGL S
Sbjct: 1 MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57
Query: 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
EDKK LL+RYG D ++ S K RR++E K+ + + EE RTTHRLLQ
Sbjct: 58 EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKL 228
>gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana]
gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana]
gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana]
gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana]
gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana]
Length = 314
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/180 (72%), Positives = 142/180 (78%), Gaps = 4/180 (2%)
Query: 49 KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
SGTGL SEDKK LL+RYG D ++ S K RR++E GR S+ V + RTT
Sbjct: 52 NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230
>gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max]
Length = 311
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/226 (65%), Positives = 166/226 (73%), Gaps = 8/226 (3%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQF
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFV 229
>gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis]
gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis]
Length = 268
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/149 (81%), Positives = 134/149 (89%), Gaps = 4/149 (2%)
Query: 80 KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
+++R+KEG+ + K VV++E ++ RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18 RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76
Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL
Sbjct: 77 KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136
Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQF 225
PNLE TGFLDVS +HTVRVE FLERAEQF
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQF 165
>gi|357496275|ref|XP_003618426.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
gi|355493441|gb|AES74644.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
Length = 325
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/183 (68%), Positives = 143/183 (78%), Gaps = 7/183 (3%)
Query: 51 GTGLTSEDKKELLKRYG--LDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+RYG +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFC 226
QF
Sbjct: 234 QFV 236
>gi|388508868|gb|AFK42500.1| unknown [Medicago truncatula]
Length = 325
Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/183 (68%), Positives = 142/183 (77%), Gaps = 7/183 (3%)
Query: 51 GTGLTSEDKKELLKR--YGLDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+R Y +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERDGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFC 226
QF
Sbjct: 234 QFV 236
>gi|357116543|ref|XP_003560040.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Brachypodium
distachyon]
Length = 312
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 140/176 (79%), Gaps = 9/176 (5%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRL 108
+++ L+RYGL+PD++ +EP P+ RR+E R + V+ K+ E R TH++
Sbjct: 50 ERRRFLERYGLNPDDYEEDAEPDPREERRRERRMRRSGRGEDEAAVAPVKAVERRETHKM 109
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGS
Sbjct: 110 LQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGS 169
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
VGIEA+SRGCSEVHFVEMDPWVVS VL PNLE TGFLD S IH +RVETFL+ AE+
Sbjct: 170 VGIEAMSRGCSEVHFVEMDPWVVSEVLKPNLECTGFLDASDIHMLRVETFLDNAEK 225
>gi|226529235|ref|NP_001144192.1| uncharacterized protein LOC100277052 [Zea mays]
gi|195638230|gb|ACG38583.1| hypothetical protein [Zea mays]
Length = 318
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 140/178 (78%), Gaps = 11/178 (6%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+RYGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLERYGLNPNDFEEDAEDNPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFLDVSHIHMLRVENFLANAEK 233
>gi|413933138|gb|AFW67689.1| hypothetical protein ZEAMMB73_980003, partial [Zea mays]
Length = 255
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 139/178 (78%), Gaps = 11/178 (6%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSQIHMLRVEKFLANAEK 233
>gi|242033039|ref|XP_002463914.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
gi|241917768|gb|EER90912.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
Length = 320
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 131/174 (75%), Gaps = 11/174 (6%)
Query: 62 LLKRYGLDPDEFLSEPSPK-----------TRRRKEGRGSKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + + + + ++ VV+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAGEDPRQEKRDRRRRRQSGRGEQTAEAVVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEK 232
>gi|257209025|emb|CBB36503.1| Arabidopsis protein targeted to chloroplast protein At3g28460
[Saccharum hybrid cultivar R570]
Length = 327
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 132/174 (75%), Gaps = 11/174 (6%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRR--------KEGRG---SKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + R + GRG ++ V+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAEEDPREERRDRRRRRQSGRGEQTAEAAVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSP+ +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPRDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEK 232
>gi|222625753|gb|EEE59885.1| hypothetical protein OsJ_12486 [Oryza sativa Japonica Group]
Length = 313
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 127/171 (74%), Gaps = 8/171 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 58 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 117
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 118 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 177
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 178 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK 228
>gi|115455185|ref|NP_001051193.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|108710953|gb|ABF98748.1| expressed protein [Oryza sativa Japonica Group]
gi|108710954|gb|ABF98749.1| expressed protein [Oryza sativa Japonica Group]
gi|113549664|dbj|BAF13107.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|215697269|dbj|BAG91263.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740723|dbj|BAG97379.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193713|gb|EEC76140.1| hypothetical protein OsI_13427 [Oryza sativa Indica Group]
Length = 311
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 127/171 (74%), Gaps = 8/171 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK 226
>gi|326511379|dbj|BAJ87703.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534084|dbj|BAJ89392.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534138|dbj|BAJ89419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 314
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 132/172 (76%), Gaps = 9/172 (5%)
Query: 62 LLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRLLQVL 112
L+RYGL+PD+F +EP P+ RR+E R + V+ + E R TH++LQ+L
Sbjct: 55 FLERYGLNPDDFEEDAEPDPREERRRERRMRRSGRGEEEAAVAPARPVERRETHKMLQIL 114
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASL+PG WLDLYSGTGSVGIE
Sbjct: 115 AGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLKPGLWLDLYSGTGSVGIE 174
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
A+SRGCSE HFVE+DPWV+S VL PNL+ TGFLD S IH +RVE FL+ AE+
Sbjct: 175 AMSRGCSEAHFVELDPWVISEVLKPNLDCTGFLDTSHIHMLRVENFLDNAEK 226
>gi|108710955|gb|ABF98750.1| expressed protein [Oryza sativa Japonica Group]
Length = 238
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 127/171 (74%), Gaps = 8/171 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK 226
>gi|29788862|gb|AAP03408.1| hypothetical protein [Oryza sativa Japonica Group]
gi|37999998|gb|AAR07085.1| unknown protein [Oryza sativa Japonica Group]
Length = 318
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/179 (61%), Positives = 128/179 (71%), Gaps = 16/179 (8%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEV--------HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+SRGCSEV HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 MSRGCSEVFPRTEVKAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK 234
>gi|255640797|gb|ACU20682.1| unknown [Glycine max]
Length = 199
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 141/195 (72%), Gaps = 8/195 (4%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSTTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGR LDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRCLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVL 195
VHFVEMDPWVVS+VL
Sbjct: 184 VHFVEMDPWVVSDVL 198
>gi|302790748|ref|XP_002977141.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
gi|300155117|gb|EFJ21750.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
Length = 207
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 94/121 (77%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 7 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 66
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNLE T + + S +H ++VET+LE
Sbjct: 67 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLEATNYTEQSVVHMLKVETYLE 126
Query: 221 R 221
+
Sbjct: 127 K 127
>gi|302820944|ref|XP_002992137.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
gi|300140063|gb|EFJ06792.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
Length = 225
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 94/121 (77%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 23 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 82
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNL+ T + + S +H ++VET+LE
Sbjct: 83 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLDATNYTEQSVVHMLKVETYLE 142
Query: 221 R 221
+
Sbjct: 143 K 143
>gi|168036734|ref|XP_001770861.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677920|gb|EDQ64385.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 245
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 92/122 (75%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
R TH+LL+V+ GK +KL SP ++VRPMME+V+GA F+ILQ+ GG A L PGRWLDL
Sbjct: 38 RLTHKLLRVMAGKVGGRKLASPADLNVRPMMEIVRGAVFNILQALGGGAAQLPPGRWLDL 97
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
YSGTGSVGIEA+SRGC +FVEMDPWV+ VL PNL TGF D + +HT VET L++
Sbjct: 98 YSGTGSVGIEALSRGCEMAYFVEMDPWVIDEVLNPNLAVTGFQDQAVVHTSPVETLLDQV 157
Query: 223 EQ 224
+
Sbjct: 158 AE 159
>gi|293336610|ref|NP_001168658.1| uncharacterized protein LOC100382446 [Zea mays]
gi|223949969|gb|ACN29068.1| unknown [Zea mays]
gi|413933137|gb|AFW67688.1| hypothetical protein ZEAMMB73_980003 [Zea mays]
Length = 200
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 105/135 (77%), Gaps = 11/135 (8%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEV 181
GSVGIEA+SRGCSEV
Sbjct: 176 GSVGIEAMSRGCSEV 190
>gi|255085040|ref|XP_002504951.1| predicted protein [Micromonas sp. RCC299]
gi|226520220|gb|ACO66209.1| predicted protein [Micromonas sp. RCC299]
Length = 121
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ L ++ G R+KLLSP G+D RPMM +V+GA FD++ S G ++ RW
Sbjct: 1 RRTHKRLTIVAGTLSRRKLLSPSGLDTRPMMGMVRGATFDMIMSLIGIRSNTAFPPDSRW 60
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL++GTG++GIEAISRGC+E HFVEMDPWVV+NV NL+ G + +++HT VE FL
Sbjct: 61 LDLFAGTGAIGIEAISRGCAESHFVEMDPWVVNNVTRKNLQSLGVVSKTTVHTASVEAFL 120
>gi|307109177|gb|EFN57415.1| hypothetical protein CHLNCDRAFT_142855 [Chlorella variabilis]
Length = 656
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Query: 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLY 163
TH+ L+V+ G A ++L SP+G RPMME+V+ A F ++ S G P SL P RWLDLY
Sbjct: 422 THQRLRVIAGAAAGRRLRSPQGDQTRPMMEMVRNAVFSMVMSLYGSPTSLPPTTRWLDLY 481
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTG+VGIEA+SRG + HFVEM PWVVS L+PNLE + +HT + E FL RA+
Sbjct: 482 AGTGAVGIEALSRGVGQCHFVEMSPWVVSKCLMPNLEACEMESAAVVHTGKAEDFLRRAQ 541
Query: 224 QFCR 227
Q R
Sbjct: 542 QLSR 545
>gi|384246870|gb|EIE20358.1| hypothetical protein COCSUDRAFT_18562 [Coccomyxa subellipsoidea
C-169]
Length = 226
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRP 156
++ E TH+ L+++GG K++ S +G RPMME V+ A FD++ S AGG P+ L
Sbjct: 17 RTAAEHKTHKRLRLVGGALAGKRITSGRGETTRPMMEKVRKAVFDMMMSFAGGNPSFLEG 76
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
RWLDL++GTGSVG+EA+SRG + F+E+DPWV++NVL PN+E G D + IH+ + E
Sbjct: 77 TRWLDLFAGTGSVGLEALSRGAAHCQFIELDPWVINNVLSPNIESCGASDSTVIHSGKAE 136
Query: 217 TFLERA 222
FL+RA
Sbjct: 137 AFLQRA 142
>gi|145346079|ref|XP_001417522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577749|gb|ABO95815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 468
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 228 RKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPDSRW 287
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LD++ GTG++GIE+ISRG E HFVEMDPWVV+NV NL G ++ HT V+ F+
Sbjct: 288 LDMFCGTGAIGIESISRGVVEAHFVEMDPWVVNNVTNKNLNSLGLTKQTTTHTASVQAFM 347
Query: 220 ERAEQFCR 227
+ + R
Sbjct: 348 NQHHKNAR 355
>gi|412986233|emb|CCO17433.1| predicted protein [Bathycoccus prasinos]
Length = 547
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PG 157
EE+ TH+ LQ++ G+ R+ +L+P G++ RPMM VV+GA FD++ S G ++++
Sbjct: 320 EEKKTHKRLQIVAGRHSRRVVLTPSGLNTRPMMGVVRGATFDMILSLVGSRSNVQFPENS 379
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
RWLDL++GTG++G+EA+SRGC + HFVEMD W V NV N++ G ++ H VET
Sbjct: 380 RWLDLFAGTGAIGLEALSRGCVDAHFVEMDDWTVKNVTRVNIKTLGEEKNATAHCASVET 439
Query: 218 FLER 221
FL+R
Sbjct: 440 FLQR 443
>gi|308803004|ref|XP_003078815.1| unnamed protein product [Ostreococcus tauri]
gi|116057268|emb|CAL51695.1| unnamed protein product [Ostreococcus tauri]
Length = 472
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 84/128 (65%), Gaps = 3/128 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
+ TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 226 KKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPNSRW 285
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL+ GTG++G+E+ISRGC E HFVEMDPWV++N N+ G ++ H V+ F+
Sbjct: 286 LDLFCGTGAIGLESISRGCVEAHFVEMDPWVINNCTNKNIATLGVQKQTTTHCASVQAFM 345
Query: 220 ERAEQFCR 227
+ + R
Sbjct: 346 SQNHKSAR 353
>gi|303282743|ref|XP_003060663.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458134|gb|EEH55432.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 7/145 (4%)
Query: 80 KTRRRKEGRGSKLVVSDEKSQEE--RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
K RR E + + +E+ Q E R TH+ + ++ G R+KLLSP G+D RPMM +V+
Sbjct: 243 KLLRRLESEKAAVASFNERKQTEQARKTHKRMTIVAGTYARRKLLSPSGLDTRPMMGMVR 302
Query: 138 GAAFDILQSAGGCPASLR----PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193
GA FD++ + G ++++ RWLDL++GTG++G+EA+SRGC E HFVEMDPWV +N
Sbjct: 303 GATFDMVMALIGSASNVQFPDPSSRWLDLFAGTGAIGLEAMSRGCVESHFVEMDPWVTNN 362
Query: 194 VLIPNLEWTGFLDVSS-IHTVRVET 217
VL N++ G + +HT VE
Sbjct: 363 VLEKNIKSLGLTRSDARVHTSSVEA 387
>gi|221632131|ref|YP_002521352.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
gi|221157241|gb|ACM06368.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
Length = 195
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G+ RPM + ++ A F +L S G +RP R LDLY+G+G+
Sbjct: 1 MRVIGGSARGRRLKAPRGLRTRPMADKIREALFSMLDSLG-----IRPQRVLDLYAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIE +SRG V FV+ + V+ NL TGF D ++H V+ FL R
Sbjct: 56 IGIETLSRGARWVDFVDRSAAACA-VIRDNLTATGFADRGAVHCTTVQAFLRR 107
>gi|390562348|ref|ZP_10244573.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173074|emb|CCF83875.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 194
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RPM + ++ A F +L S G ++P R LDLY+G+GS
Sbjct: 1 MRVISGTARGHRLKAPRGMTTRPMADKIREAVFSVLASEG-----IQPVRVLDLYAGSGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
VGIEA+SRG FVE + + V+ NL T F +++H VE+F+ R
Sbjct: 56 VGIEALSRGAEWADFVEHNAAACA-VIRDNLASTRFTGRAAVHQATVESFISR 107
>gi|309789638|ref|ZP_07684219.1| methyltransferase [Oscillochloris trichoides DG-6]
gi|308228374|gb|EFO82021.1| methyltransferase [Oscillochloris trichoides DG6]
Length = 185
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ L +PKGM RPM++ VKG+ F IL+ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGKAKGHTLKAPKGMGTRPMLDKVKGSLFSILEGYG----RIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+GIE +SRG S FVE V S ++ NL T + +H + V+ F++
Sbjct: 56 LGIECLSRGASAADFVEQSAHVCS-IINENLRHTKLDALGKVHCLPVDRFIQ 106
>gi|298243748|ref|ZP_06967555.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
gi|297556802|gb|EFH90666.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
Length = 194
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+A+ K+L SPK +D RP+++ VK A FDIL ++ R+LDL+ G G+
Sbjct: 1 MRVVTGEAKGKRLKSPKTIDTRPILDRVKTALFDILS------GEVQGTRFLDLFGGVGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
VGIEA+SRG + F+E++P V +L NL+ TG ++ TVR + F
Sbjct: 55 VGIEALSRGAAHATFLELNPQVF-RILRENLQLTGL--INRAETVRGDAF 101
>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
Length = 189
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 9/104 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+GG+A+R +L + KG D+RP E VK A F+IL AS PG R+LDL++GTG
Sbjct: 1 MRVIGGEAKRCRLATLKGKDLRPTSERVKEALFNIL-------ASQVPGSRFLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
VGIEA+SRG FVE DP V ++ NLE TG + + ++
Sbjct: 54 GVGIEALSRGAKFAVFVERDPRAV-KLIRENLERTGLSNRARVY 96
>gi|163847955|ref|YP_001635999.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525835|ref|YP_002570306.1| methyltransferase [Chloroflexus sp. Y-400-fl]
gi|163669244|gb|ABY35610.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222449714|gb|ACM53980.1| methyltransferase [Chloroflexus sp. Y-400-fl]
Length = 192
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G S+ LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYGPIRGSV-----LDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+GIE +SRG FVE + V S ++ NL T F I+ + V+ FL R R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCS-IIADNLRHTRFEQQGHIYHMPVDRFLHRQRGIGR 113
>gi|148656730|ref|YP_001276935.1| putative methyltransferase [Roseiflexus sp. RS-1]
gi|148568840|gb|ABQ90985.1| putative methyltransferase [Roseiflexus sp. RS-1]
Length = 205
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +L +PKG+ RPM++ VK A F +L+ G +R GR LDLY+GTG+
Sbjct: 1 MRVITGTAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIE +SRG S FVE V ++ NLE T D + + + VE FL R
Sbjct: 56 LGIECLSRGASWADFVEHKAHVC-QIIRENLEHTRLADRARVFQMPVERFLHR 107
>gi|219849855|ref|YP_002464288.1| methyltransferase [Chloroflexus aggregans DSM 9485]
gi|219544114|gb|ACL25852.1| methyltransferase [Chloroflexus aggregans DSM 9485]
Length = 192
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G +R G LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GVVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIE +SRG FVE + V + ++ NL T F I+ + V+ FL R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCT-IIADNLRHTHFEQQGRIYQMPVDRFLHR 107
>gi|302037877|ref|YP_003798199.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
gi|300605941|emb|CBK42274.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
Length = 190
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V+ G R ++LL P+G +RP + VK A F IL ++ G R LDLY+GT
Sbjct: 1 MRVIAGLHRGRRLLGPRGQAIRPTSDRVKEALFSILGERTTGA--------RVLDLYAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
GS+GIEA+SRG + V FVE D + ++ NLE G +++ +V F RA Q+
Sbjct: 53 GSIGIEALSRGAAHVTFVEADRQAL-RLINSNLEQCGLQQSANVCACQVSQFFRRATQW 110
>gi|283798042|ref|ZP_06347195.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|291074344|gb|EFE11708.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|295091819|emb|CBK77926.1| RNA methyltransferase, RsmD family [Clostridium cf. saccharolyticum
K10]
Length = 190
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+GMD RP + +K F+++Q L R+LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKAPEGMDTRPTTDRIKETLFNMIQD------ELYHCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG FVE P V V+ NL+ T D + + V+T L R E+
Sbjct: 55 IGIEALSRGGELAVFVENSPKAVE-VIRSNLKTTHLEDRAMVMNCDVQTALNRLEE 109
>gi|269837913|ref|YP_003320141.1| hypothetical protein Sthe_1886 [Sphaerobacter thermophilus DSM
20745]
gi|269787176|gb|ACZ39319.1| Protein of unknown function methylase putative [Sphaerobacter
thermophilus DSM 20745]
Length = 194
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L P+ RPM + V+ A F +L + G +RP R LDLY+G+G
Sbjct: 1 MRVIAGTMKGHQLKVPRTRRTRPMSQRVREALFMVLHTLG-----VRPRRVLDLYAGSGG 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG FVE +P + V+ NL T F D +++H V++FL R
Sbjct: 56 IGIEALSRGAEWCDFVEQNPAACA-VIRDNLASTRFTDRAAVHQTTVQSFLSR 107
>gi|134299931|ref|YP_001113427.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052631|gb|ABO50602.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
Length = 184
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL SPKGM RP + V+ A F+IL S P S R+LDL+SGTG+
Sbjct: 1 MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSY--VPGS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
V IEA+SRG + VE D + ++ NL LD + + TV V
Sbjct: 55 VAIEALSRGAEKATLVERDKN-TARIIYDNLRMCNVLDKAEVLTVDV 100
>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
Length = 189
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L +P+G RP + VK A F +L SAG L R LDL++G+GS
Sbjct: 1 MRVIAGKARGMRLTAPRGTTTRPTSDRVKEALFSLLDSAG----RLDGMRVLDLFAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG +V F+E D + ++ + NL TGF D + + LER
Sbjct: 57 LGIEALSRGAEQVTFIEKDRHALESLRL-NLGHTGFSDRAEVLPFDCLQALER 108
>gi|409911782|ref|YP_006890247.1| DNA methyltransferase [Geobacter sulfurreducens KN400]
gi|298505356|gb|ADI84079.1| DNA methyltransferase, putative [Geobacter sulfurreducens KN400]
Length = 187
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLER 221
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I + FLER
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDFLER 112
>gi|39996346|ref|NP_952297.1| DNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983226|gb|AAR34620.1| DNA methyltransferase, putative [Geobacter sulfurreducens PCA]
Length = 187
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARI 98
>gi|392374452|ref|YP_003206285.1| methyltransferase [Candidatus Methylomirabilis oxyfera]
gi|258592145|emb|CBE68450.1| putative methyltransferase [Candidatus Methylomirabilis oxyfera]
Length = 185
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 9/115 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+GG AR +++L+P+G RP + ++ F++L A GR +LDLY+GTG
Sbjct: 1 MRVIGGLARGRRILAPRGRMTRPTSDYLREVLFNLL-------AQQVEGRTFLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+VGIEA+SRG + FVE D ++ +L NL+ +GF D + + ++ V +L RA
Sbjct: 54 AVGIEALSRGAATAVFVEHDRSALT-MLYRNLDTSGFRDRAQVVSMEVLRYLRRA 107
>gi|156741789|ref|YP_001431918.1| methyltransferase [Roseiflexus castenholzii DSM 13941]
gi|156233117|gb|ABU57900.1| putative methyltransferase [Roseiflexus castenholzii DSM 13941]
Length = 191
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L +P+G+ RPM++ VK A F +++ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGTAKGRRLKAPEGLGTRPMLDRVKEALFSVIEGYG----PIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GIE +SRG + FVE V ++ NLE T D + I + VE FL
Sbjct: 56 LGIECLSRGAAWADFVEHKVH-VCRIIRENLEHTRLADRARIFPMSVERFL 105
>gi|296133586|ref|YP_003640833.1| methyltransferase [Thermincola potens JR]
gi|296032164|gb|ADG82932.1| methyltransferase [Thermincola potens JR]
Length = 185
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL +P+GM+ RP + VK + F+IL + +LDL++GTGS
Sbjct: 1 MRVITGIAKGRKLKAPRGMNTRPTTDRVKESLFNILGE------KVINSVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG SE F+E D V V++ NL TG D ++
Sbjct: 55 IGIEALSRGASEAVFIEKDVRVYK-VILENLAHTGLADFGEVY 96
>gi|302670818|ref|YP_003830778.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
gi|302395291|gb|ADL34196.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
Length = 183
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR KL++P+G D RP + +K F+++Q P S+ ++DLY+G+G
Sbjct: 1 MRVIAGSARRLKLVTPEGNDTRPTQDRIKETLFNMIQLQ--VPGSV----FIDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG + +F++ + ++ NL+ T F DVS++
Sbjct: 55 IGIEALSRGAKKAYFID-NAMSSYKCIMTNLKTTHFEDVSTV 95
>gi|266623325|ref|ZP_06116260.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
gi|288864902|gb|EFC97200.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
Length = 187
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G+D RP + +K F+IL P S +LDL+SG+G
Sbjct: 1 MRVIAGKARRLLLKTIDGLDTRPTTDRIKETLFNILNP--DLPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG F+EM+P + + NL+ T F D S + V T L+R E
Sbjct: 55 IGIEALSRGADRAVFIEMNPK-AAECIRENLQTTKFTDESIVMNCDVLTGLKRLE 108
>gi|269926754|ref|YP_003323377.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
gi|269790414|gb|ACZ42555.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
Length = 189
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R L SP+ + RPM + ++ A F I+ P GR LDLY+GTG+
Sbjct: 1 MRVTGGELRGVTLKSPRSLSTRPMTDRLRLALFSII-----APMEQPRGRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG V FV+ + + V+ NLE T ++ + +H V++FL E
Sbjct: 56 LGIEALSRGADFVDFVDQNSSACA-VIRANLEQTKLVNRAKVHKRSVKSFLASYE 109
>gi|94967148|ref|YP_589196.1| hypothetical protein Acid345_0117 [Candidatus Koribacter versatilis
Ellin345]
gi|94549198|gb|ABF39122.1| conserved hypothetical protein 95 [Candidatus Koribacter versatilis
Ellin345]
Length = 186
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P+GMDVRP + ++ F++L S L RW+DL++GTG+
Sbjct: 1 MRIISGKFRSRSLKTPQGMDVRPSSDRLRETLFNVLASG----YQLEDSRWIDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVV 191
VG+EA+SRG ++FVE P +
Sbjct: 57 VGLEALSRGAGYIYFVEKAPKIA 79
>gi|410667355|ref|YP_006919726.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
gi|409105102|gb|AFV11227.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
Length = 200
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG A+ K+L + K +RP + ++ A F+IL P S +LDL++G+GS
Sbjct: 4 LRVIGGIAKGKRLKTRKVKHLRPATDYLREALFNILMYQ--VPGSF----FLDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+GIEA+SRG V FVE DP + ++ NLE TGF D + + T
Sbjct: 58 IGIEALSRGAERVCFVEKDPG-NARLIRENLEITGFTDQAEVFT 100
>gi|226325134|ref|ZP_03800652.1| hypothetical protein COPCOM_02926 [Coprococcus comes ATCC 27758]
gi|225206482|gb|EEG88836.1| RNA methyltransferase, RsmD family [Coprococcus comes ATCC 27758]
Length = 202
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 13/126 (10%)
Query: 93 VVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA 152
VVSD +QE ++V+ GKARR L++ KGM+ RP + K F+++ + G C
Sbjct: 7 VVSDIINQENDK----MRVIAGKARRIPLVTVKGMETRPTTDRTKETLFNMI-AHGLCDC 61
Query: 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+ +LDL+SG+G++GIEAISRG + FVE +P + ++ NL+ T D + +
Sbjct: 62 T-----FLDLFSGSGAIGIEAISRGVKKAVFVENNPNAIQCIM-ENLKKTQLADQAKV-- 113
Query: 213 VRVETF 218
+R + F
Sbjct: 114 IREDVF 119
>gi|404496621|ref|YP_006720727.1| DNA methyltransferase [Geobacter metallireducens GS-15]
gi|418066708|ref|ZP_12704067.1| methyltransferase [Geobacter metallireducens RCH3]
gi|78194224|gb|ABB31991.1| DNA methyltransferase, putative [Geobacter metallireducens GS-15]
gi|373560021|gb|EHP86297.1| methyltransferase [Geobacter metallireducens RCH3]
Length = 188
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + VK A F IL S G +L R LD+++GTG+
Sbjct: 1 MRVIGGTARGRRLAAPRGERVRPTADRVKEALFSILTSLLG---NLEGLRVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRGCSE FV+
Sbjct: 58 LGIEALSRGCSEAIFVD 74
>gi|28210920|ref|NP_781864.1| methyltransferase [Clostridium tetani E88]
gi|28203359|gb|AAO35801.1| methyltransferase [Clostridium tetani E88]
Length = 185
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 73/121 (60%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+L P+GM+ RP ++ VK F+++Q + + LDL++GTGS
Sbjct: 1 MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQ------VHVYGAKTLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFL-ERAEQ 224
+G+EA+SRG SE + ++ P S +L N++ GF D ++ + TFL E+ E+
Sbjct: 55 LGLEAVSRGASECYLIDRFPKTYS-LLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEE 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|323702702|ref|ZP_08114363.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333923274|ref|YP_004496854.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532365|gb|EGB22243.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333748835|gb|AEF93942.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 187
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP + V+ A F+IL A P S ++LDL+SGTG+
Sbjct: 1 MRIIAGSARGRTLKSPKGMSTRPTTDRVREALFNIL--AHQVPDS----KFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
V IEA+SRG + VE D + +++ NL+ GF + + + + V+ ++
Sbjct: 55 VAIEALSRGAARAVLVEKD-RSAATIILNNLKLCGFSEKAQVLVLDVQRAIQ 105
>gi|163797847|ref|ZP_02191792.1| putative methyltransferase [alpha proteobacterium BAL199]
gi|159176891|gb|EDP61458.1| putative methyltransferase [alpha proteobacterium BAL199]
Length = 187
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++P G+++RP E + A F IL G P +LR R LDL+SGTG+
Sbjct: 1 MRIVAGKHRGARLVAPDGLEIRPTSERAREALFSILDG-GRFPLTLRGARVLDLFSGTGA 59
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG ++V FVE
Sbjct: 60 LGLEALSRGAAQVVFVE 76
>gi|291544856|emb|CBL17965.1| RNA methyltransferase, RsmD family [Ruminococcus champanellensis
18P13]
Length = 180
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L + +GMDVRP + VK A F +Q L + LDL++G+G
Sbjct: 1 MRVITGSARGRRLRTLEGMDVRPTTDKVKEAMFSAIQ------FQLPGAQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG + FV+ ++ V+ NLE TGF DVS++ FL +Q
Sbjct: 55 LGIEALSRGAAHGVFVDQSSRSIA-VVRENLETTGFTDVSAVVLKSQMDFLRTTDQ 109
>gi|154483594|ref|ZP_02026042.1| hypothetical protein EUBVEN_01298 [Eubacterium ventriosum ATCC
27560]
gi|149735504|gb|EDM51390.1| RNA methyltransferase, RsmD family [Eubacterium ventriosum ATCC
27560]
Length = 185
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR +L + GM RP + +K F+++ + P ++ +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLQLKTIDGMGTRPTTDRIKETLFNMINN--DMPQAV----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG S+ +FVE + V + NL +T D + + + VE+ L+ E
Sbjct: 55 IGIEALSRGASKAYFVESNKKAVQ-CIKDNLNFTKLQDDAVVMAMPVESALKDLEH 109
>gi|148264544|ref|YP_001231250.1| putative methyltransferase [Geobacter uraniireducens Rf4]
gi|146398044|gb|ABQ26677.1| putative methyltransferase [Geobacter uraniireducens Rf4]
Length = 207
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G A+ +KL SPK M VRP + VK A F+IL S G + L R LD+++GTG+
Sbjct: 19 LRIISGSAKGRKLFSPKNMRVRPTADRVKEALFNILTSLIGDFSDL---RVLDIFAGTGN 75
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI----HTVRVETFLERAEQ 224
+GIEA+SRG + FV+ + ++ NLE GF + I V ++ +R E+
Sbjct: 76 LGIEALSRGGTRTVFVDSHRESAA-IIRKNLEMLGFDQKAGILVQEALVALKALEKRGEK 134
Query: 225 F 225
F
Sbjct: 135 F 135
>gi|310659144|ref|YP_003936865.1| putative methyltransferase [[Clostridium] sticklandii]
gi|308825922|emb|CBH21960.1| putative methyltransferase [[Clostridium] sticklandii]
Length = 188
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KKLLSP+ +RP ++ VK + F+I+ +R +LDL+ G+G+
Sbjct: 1 MRVIAGKARGKKLLSPQTDKIRPTLDRVKESLFNII------GFEIRDCSFLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+GIEAISR +V+FV+ D + + N+E F D + ++ + F
Sbjct: 55 IGIEAISRDADKVYFVDRDSSSIE-LTQKNIESCKF-DSTKYKILKADAF 102
>gi|414154287|ref|ZP_11410606.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454078|emb|CCO08510.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 184
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L SP+GM RP + V+ A F+IL P S R+LDL+SGTG+
Sbjct: 1 MRVIAGSARGRILKSPRGMSTRPTADRVREALFNILSPL--VPDS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
V IEA+SRG + VE D + ++ NL+ G L+ + + + V+ L+
Sbjct: 55 VAIEALSRGAARAVLVEKDRQ-TAGIIYENLKLCGLLNQAEVLAMDVDRGLQ 105
>gi|227820998|ref|YP_002824968.1| methylase protein [Sinorhizobium fredii NGR234]
gi|227339997|gb|ACP24215.1| putative methylase protein [Sinorhizobium fredii NGR234]
Length = 185
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL G P L GR LDL++GTG+
Sbjct: 1 MRIVGGEFRGRALATPKSNDIRPTTDRTRESLFNILSH--GYPGVLDGGRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC + FVE
Sbjct: 59 VGLEALSRGCRQALFVE 75
>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 189
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G+D RP + +K F+ILQ L R+LDL+SG+G
Sbjct: 7 MRVIAGKARRLNLKTIPGIDTRPTTDRIKETLFNILQP------ELLECRFLDLFSGSGG 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG S FVE +P + + NL +T
Sbjct: 61 IGIEALSRGASYAVFVEKNPKAAA-CIRENLAFT 93
>gi|406705697|ref|YP_006756050.1| RsmD family RNA methyltransferase [alpha proteobacterium HIMB5]
gi|406651473|gb|AFS46873.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB5]
Length = 186
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KK+L PK RP+ ++VK + F++L+ + S++ LDL++G+GS
Sbjct: 1 MRVISGKLKGKKILLPKDNLTRPLRDLVKESIFNLLEHSNKLNISIKNANVLDLFAGSGS 60
Query: 169 VGIEAISRGCSEVHFVE 185
G+E ISRG +V FVE
Sbjct: 61 FGLEIISRGAEKVTFVE 77
>gi|304316956|ref|YP_003852101.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778458|gb|ADL69017.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 194
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNIIG------ADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + +FVE
Sbjct: 55 IGIEALSRGANICYFVE 71
>gi|433655103|ref|YP_007298811.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293292|gb|AGB19114.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 194
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNIIG------ADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + +FVE
Sbjct: 55 IGIEALSRGANICYFVE 71
>gi|418935866|ref|ZP_13489617.1| methyltransferase [Rhizobium sp. PDO1-076]
gi|375057400|gb|EHS53573.1| methyltransferase [Rhizobium sp. PDO1-076]
Length = 186
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRVVGGEFRGRALATPKSNDIRPTIDRTRESLFNILAHA--HPGLLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VGIEA+SRGC FVE
Sbjct: 59 VGIEALSRGCKSALFVE 75
>gi|408378532|ref|ZP_11176129.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
gi|407747669|gb|EKF59188.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
Length = 186
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKSNDIRPTVDRTRESLFNILAHA--HPGVLDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VGIEA+SRGC FVE
Sbjct: 59 VGIEALSRGCKSALFVE 75
>gi|167630221|ref|YP_001680720.1| methyltransferase [Heliobacterium modesticaldum Ice1]
gi|167592961|gb|ABZ84709.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
Length = 195
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR ++L+S KG + RP + VK A F +L AG C + + LDL++GTG+
Sbjct: 1 MRIISGQARGRRLVSVKGWETRPTADRVKEALFSVL--AGRCLEA----QCLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG + V++VE P V+ N+E TG
Sbjct: 55 LGLEALSRGAAFVYWVEKHP-AACAVIAKNIEATGL 89
>gi|15964555|ref|NP_384908.1| hypothetical protein SMc00902 [Sinorhizobium meliloti 1021]
gi|334315268|ref|YP_004547887.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|384528513|ref|YP_005712601.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|384534914|ref|YP_005718999.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407719667|ref|YP_006839329.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|433612568|ref|YP_007189366.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
gi|15073733|emb|CAC45374.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810689|gb|AEG03358.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|334094262|gb|AEG52273.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|336031806|gb|AEH77738.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407317899|emb|CCM66503.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|429550758|gb|AGA05767.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
Length = 186
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRARESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRGC +V FVE
Sbjct: 59 IGLEALSRGCRQVLFVE 75
>gi|418403585|ref|ZP_12977071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|359502495|gb|EHK75071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
Length = 186
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRTRESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRGC +V FVE
Sbjct: 59 IGLEALSRGCRQVLFVE 75
>gi|390956785|ref|YP_006420542.1| RsmD family RNA methyltransferase [Terriglobus roseus DSM 18391]
gi|390411703|gb|AFL87207.1| RNA methyltransferase, RsmD family [Terriglobus roseus DSM 18391]
Length = 195
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R + L++P+GMD RP + ++ F++L S+ R+ DLY+G+G+
Sbjct: 1 MRVIAGTYRSRPLVAPRGMDTRPTSDRLRETLFNVLGP------SVVGARFADLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VG+EAISRG +EV F E P ++ +
Sbjct: 55 VGVEAISRGAAEVFFAEKSPAALAAI 80
>gi|403386867|ref|ZP_10928924.1| methyltransferase [Clostridium sp. JC122]
Length = 185
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+ + LL P+GM RP ++ +K + F+I+Q +R +DL+SGTGS
Sbjct: 1 MRVIGGIAKGRNLLPPEGMGTRPTLDRIKESIFNIIQH------RVRGAVTVDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA SRG + + +EM S +L N+E F D+ FLE+
Sbjct: 55 LGIEAASRGAEKSYLIEMGDSSYS-LLKKNVENLKFQDLCVTLNGDCYKFLEQ 106
>gi|269121048|ref|YP_003309225.1| methyltransferase [Sebaldella termitidis ATCC 33386]
gi|268614926|gb|ACZ09294.1| methyltransferase [Sebaldella termitidis ATCC 33386]
Length = 183
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + KKL + +G + RP +E VK A F I+ + +LDLY+GTGS
Sbjct: 1 MRVVAGSVKNKKLKTKEGRETRPTLERVKEAIFSIISD------EITDSSFLDLYAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLER 221
+ IEA+SRG +E D + ++I N+ GF ++S + +R L+R
Sbjct: 55 IAIEALSRGARRAILIEQDKEALR-IIIENINNCGFENISRAYKNDVIRALEILQR 109
>gi|404481983|ref|ZP_11017212.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404344953|gb|EJZ71308.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 184
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+I+ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNIISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAIRCIR-ENLEHTKLIDKATILKGSFEANLEK 106
>gi|401408615|ref|XP_003883756.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325118173|emb|CBZ53724.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 741
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+G VRPMM VK A F +LQ G GC R R LDL+SG+
Sbjct: 302 LHVVGGRFGGRRLMMPRGGGVRPMMAKVKEALFSMLQRMGVLGCVGEQRL-RVLDLFSGS 360
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G D S I VE L E+
Sbjct: 361 GALSVEAFSRGAEFALLADSSLDSCEAAAV---NVQYCGVADRSYIVRASVEELLLVPER 417
Query: 225 FCR 227
+ R
Sbjct: 418 YLR 420
>gi|315122183|ref|YP_004062672.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495585|gb|ADR52184.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 186
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +PK +RP K A FDIL P L R LD+++GTGS
Sbjct: 1 MRIVGGKFRGRLLYTPKNRSIRPSDSRTKKALFDILTHV--YPDYLASTRMLDMFAGTGS 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG EA+SRGC V FV+
Sbjct: 59 VGFEALSRGCHYVLFVD 75
>gi|326330641|ref|ZP_08196945.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
gi|325951482|gb|EGD43518.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
Length = 187
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++LL+PKG+ RP + V+ A F ++S+ G A LR +LDLY+GTG
Sbjct: 1 MTRIIGGVAGGRRLLAPKGVRTRPTTDRVREALFSAIESSYGSLAGLR---FLDLYAGTG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA SRG V VE D
Sbjct: 58 AVGLEAWSRGAGVVTLVESD 77
>gi|374316432|ref|YP_005062860.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352076|gb|AEV29850.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
Length = 186
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GGK R + +L P G+ +RP M+ ++ + FDIL +L WLDL++G+G
Sbjct: 1 MRVTGGKYRGRTVLCPPGV-IRPAMDCMRESLFDIL-------GNLEGQSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
VGIEA SRG S VH VE D
Sbjct: 53 VGIEAASRGASPVHLVEKD 71
>gi|357040480|ref|ZP_09102267.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
gi|355356571|gb|EHG04357.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
Length = 191
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+++KL SP + VRP + VK + F+I+ S L + DLY+GTG
Sbjct: 1 MRVIAGTAKKRKLKSPGKLPVRPTADRVKESLFNIIGS------RLPDSYFADLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
VGIEA+SRG ++V FVE D V+ +L NL TG
Sbjct: 55 VGIEALSRGAAKVLFVEKDSRVM-RILQDNLAITGL 89
>gi|297617081|ref|YP_003702240.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
gi|297144918|gb|ADI01675.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
Length = 190
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KKL +P G RP+ + +K A F++L GG + R LD+++G+G
Sbjct: 1 MRVISGTARGKKLKAPPGFITRPLTDRIKEALFNVL---GG---EIEDARLLDVFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
VGIEA+SRG S V FVE P + + NL+ F
Sbjct: 55 VGIEALSRGASYVVFVEKHPAAIRTIY-ANLDGCRF 89
>gi|224102941|ref|XP_002334108.1| predicted protein [Populus trichocarpa]
gi|222869582|gb|EEF06713.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 40/65 (61%), Gaps = 18/65 (27%)
Query: 115 KARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174
K RKKL SP MDVRP+MEVV+ GRWLDL SGTGSVGIEAI
Sbjct: 16 KPLRKKLRSPNAMDVRPVMEVVEA------------------GRWLDLLSGTGSVGIEAI 57
Query: 175 SRGCS 179
SRGCS
Sbjct: 58 SRGCS 62
>gi|378825079|ref|YP_005187811.1| methyltransferase [Sinorhizobium fredii HH103]
gi|365178131|emb|CCE94986.1| methyltransferase [Sinorhizobium fredii HH103]
Length = 185
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC + FVE
Sbjct: 59 VGLEALSRGCRQALFVE 75
>gi|306819896|ref|ZP_07453549.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304552053|gb|EFM39991.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 196
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP M+ + + F++LQ + +LDL+SG+G+
Sbjct: 16 MRVIGGKYRGKKLIPPKNDDIRPTMDKARESLFNMLQ------YYIYESSFLDLFSGSGA 69
Query: 169 VGIEAISRGCSEVHFVE 185
V IEAISRG V VE
Sbjct: 70 VSIEAISRGAKLVTLVE 86
>gi|291522174|emb|CBK80467.1| RNA methyltransferase, RsmD family [Coprococcus catus GD/7]
Length = 187
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR +L S +GM+ RP + +K F++L Q C +LDL+SG+G
Sbjct: 1 MRVIAGKARRIQLKSMEGMNTRPTTDRIKETLFNMLSQDIYEC-------HFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
++GIEA+SRG + FVE + V+ + NL T + + I V +T
Sbjct: 54 AIGIEALSRGAASAVFVEHNRQAVA-CIKENLTKTKLMSQAEIMPVECQT 102
>gi|153954010|ref|YP_001394775.1| hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219854624|ref|YP_002471746.1| hypothetical protein CKR_1281 [Clostridium kluyveri NBRC 12016]
gi|146346891|gb|EDK33427.1| Hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219568348|dbj|BAH06332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 186
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSG 165
++V+GG AR +KL+SPKG + RP ++ VK A F+I+Q+ G C LD+++G
Sbjct: 1 MRVIGGLARGRKLMSPKGYNTTRPTLDRVKEAMFNIIQNRIYGSC--------VLDIFAG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
TGS+G+EA SRG + V+ D S L N+E GF ++ FL + E+
Sbjct: 53 TGSLGLEAASRGAKKCLLVDKDKDTFS-FLKQNVENLGFSEICETINRDSYEFLRQIER 110
>gi|398350405|ref|YP_006395869.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
gi|390125731|gb|AFL49112.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
Length = 186
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC + FVE
Sbjct: 59 VGLEALSRGCRQALFVE 75
>gi|348026193|ref|YP_004765998.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
gi|341822247|emb|CCC73171.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
Length = 185
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP ++ + + F+IL+S+GG LR LD+++GTG+
Sbjct: 1 MRIISGSARGRVLKSPKGMLTRPTLDRTRESLFNILESSGG----LRGAAVLDIFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + F++ ++ N GF D +
Sbjct: 57 LGLEALSRGAASAVFID---HYTQQLIRQNAALCGFADCVEV 95
>gi|291545920|emb|CBL19028.1| RNA methyltransferase, RsmD family [Ruminococcus sp. SR1/5]
Length = 182
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR L + G + RP + +K F+ILQ GC R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLNLKTIPGNETRPTTDRIKETLFNILQPEIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
++GIEA+SRG FVE +P + + NL +T D
Sbjct: 54 AIGIEALSRGAEYAVFVEKNPKACT-CIRENLSFTKLTD 91
>gi|166031898|ref|ZP_02234727.1| hypothetical protein DORFOR_01599 [Dorea formicigenerans ATCC
27755]
gi|166028351|gb|EDR47108.1| RNA methyltransferase, RsmD family [Dorea formicigenerans ATCC
27755]
Length = 183
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+GIEA+SRG + FVE +P + + NLE T D + T++++ F
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAK--TMQMDVF 101
>gi|346306212|ref|ZP_08848374.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
gi|345905933|gb|EGX75668.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
Length = 183
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+GIEA+SRG + FVE +P + + NLE T D + T++++ F
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAK--TMQMDVF 101
>gi|150395642|ref|YP_001326109.1| putative methyltransferase [Sinorhizobium medicae WSM419]
gi|150027157|gb|ABR59274.1| putative methyltransferase [Sinorhizobium medicae WSM419]
Length = 186
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILGHA--YPEVLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG EA+SRGC +V FVE
Sbjct: 59 VGFEALSRGCRQVLFVE 75
>gi|442804249|ref|YP_007372398.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740099|gb|AGC67788.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 173
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
KL +PKG++ RP ++ VK + F+IL P S + LDL++GTG++ IEA+SRG
Sbjct: 2 KLKTPKGLNTRPTVDSVKESIFNILNPY--IPGS----KVLDLFAGTGALAIEALSRGAE 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+FVE + N++ NL T FLD ++ +V FL
Sbjct: 56 LAYFVE-ENRNCCNIIRENLAHTKFLDKGVVYCRKVSNFL 94
>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
gi|149833243|gb|EDM88325.1| RNA methyltransferase, RsmD family [Ruminococcus obeum ATCC 29174]
Length = 184
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLALKTVPGMETRPTTDRIKETLFNILQP------EIPDCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG FVE +P + + NL +T
Sbjct: 55 IGIEALSRGAESAVFVEKNPKACA-CIRENLTFT 87
>gi|363895553|ref|ZP_09322548.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
gi|361957305|gb|EHL10615.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
Length = 184
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK D+RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDDIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|325661177|ref|ZP_08149804.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472684|gb|EGC75895.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
Length = 189
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMISP------YLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG E FVE +P ++ + NL+ T + + T V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMTTDVMTALRRME 108
>gi|225572198|ref|ZP_03781062.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
10507]
gi|225040370|gb|EEG50616.1| RNA methyltransferase, RsmD family [Blautia hydrogenotrophica DSM
10507]
Length = 183
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G++ RP + +K F+ILQ L R+LDL+SG+G+
Sbjct: 1 MRVIAGKARRLPLKTVPGLETRPTTDRIKETLFNILQP------KLLDSRFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG + F+E P V + NL +T
Sbjct: 55 IGIEALSRGAALAVFIEKSPKAV-GCIKENLAFT 87
>gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
Length = 190
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A+ +++ P G VRP + +K A F+IL G +LDLY+GTG+
Sbjct: 1 MRIIGGQAKGRRIAVPPGYAVRPTSDRIKEALFNILGPVEGQ-------EFLDLYAGTGN 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
VG+EA+SRG V FVE +V++ L NLE GF I + VE
Sbjct: 54 VGMEALSRGADVVVFVEKISVLVTS-LKRNLEQFGFQGRYRIFRMEVE 100
>gi|315500442|ref|YP_004089245.1| methyltransferase [Asticcacaulis excentricus CB 48]
gi|315418454|gb|ADU15094.1| methyltransferase [Asticcacaulis excentricus CB 48]
Length = 192
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+G + RP + + A F+IL+ A P +L R +D+++G+G+
Sbjct: 1 MRIVGGEFRGRALSAPEGQNTRPTSDRARQAVFNILEHAEFAP-NLNGARVMDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG + FV+ D + N+E G V+ IH
Sbjct: 60 LGLEAMSRGAAFCLFVDTDD-AARGAIRDNVEAFGLFGVTRIH 101
>gi|262276795|ref|ZP_06054588.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
gi|262223898|gb|EEY74357.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
Length = 187
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L P RP+ + VK F++L+ + + + + LD +SG+GS
Sbjct: 1 MRIISGNKKGKKILLPNPEITRPLKDNVKENIFNVLKHSRNFQINFQGIKVLDFFSGSGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
G+E ISRG S V F E+D SN+L NL
Sbjct: 61 FGLECISRGASNVKFFEIDSK-TSNILFRNL 90
>gi|167648597|ref|YP_001686260.1| methyltransferase [Caulobacter sp. K31]
gi|167351027|gb|ABZ73762.1| methyltransferase [Caulobacter sp. K31]
Length = 187
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P LR R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIVTPPGDTTRPTSDRARQAVFNILEHAAWAP-ELRGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG + FVE D + NLE G S +H
Sbjct: 60 LGLEAMSRGAAFCLFVETDD-AARGAIRENLEAFGLFGQSRVH 101
>gi|402312210|ref|ZP_10831140.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
gi|400370871|gb|EJP23853.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
Length = 184
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAI-RCIRENLEHTKLIDKATILKGSFEANLEK 106
>gi|255281786|ref|ZP_05346341.1| RNA methyltransferase, RsmD family [Bryantella formatexigens DSM
14469]
gi|255267853|gb|EET61058.1| RNA methyltransferase, RsmD family [Marvinbryantia formatexigens
DSM 14469]
Length = 188
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + +K F++L + GC R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLALKTVEGMDTRPTTDRIKETLFNMLNAQIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
++GIEA+SRG FVE + + + NL +T D + + V + L + E
Sbjct: 54 AIGIEALSRGAESAVFVEHNRR-AAQCIQQNLSFTRLKDRAVLMQTDVCSALRKME 108
>gi|239787518|emb|CAX83988.1| conserved uncharacterized protein [uncultured bacterium]
Length = 188
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL----QSAGGCPASLRPGRWLDLYS 164
++++GGK R K L++P+G DVRP + +G+ FDIL Q G A + R D+++
Sbjct: 1 MRIIGGKFRGKSLIAPEGRDVRPTSDRARGSLFDILLHRFQDTSGSLAGV---RVADVFA 57
Query: 165 GTGSVGIEAISRGCSEVHFVE 185
GTG++G+EA+SRG S V F++
Sbjct: 58 GTGAMGLEALSRGASHVTFLD 78
>gi|376261484|ref|YP_005148204.1| RsmD family RNA methyltransferase [Clostridium sp. BNL1100]
gi|373945478|gb|AEY66399.1| RNA methyltransferase, RsmD family [Clostridium sp. BNL1100]
Length = 184
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ A PG LDL++GT
Sbjct: 1 MLRVISGSAKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYMPGSNILDLFAGT 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
GS+GIEA+SRG + F ++ ++++ NL+ T +D S + + L++ Q
Sbjct: 54 GSLGIEALSRGANSAVFCDLSEQ-SADIITRNLQHTKLIDKSEVFLGEAQIILKKLSQLS 112
Query: 227 R 227
+
Sbjct: 113 K 113
>gi|354558650|ref|ZP_08977904.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
gi|353545712|gb|EHC15162.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
Length = 181
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL + GMD RP + VKGA F++L+ ++ R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRKLKTVSGMDTRPTADKVKGAIFNVLRE------KVQDARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+ +EA+S+G EV VE + V+ NL G
Sbjct: 55 LALEALSQGAQEVVLVE-KAYTAQKVIQENLTLIG 88
>gi|167745657|ref|ZP_02417784.1| hypothetical protein ANACAC_00349 [Anaerostipes caccae DSM 14662]
gi|167654969|gb|EDR99098.1| RNA methyltransferase, RsmD family [Anaerostipes caccae DSM 14662]
Length = 187
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRGC FVE
Sbjct: 55 IGIEALSRGCKHAVFVE 71
>gi|347542366|ref|YP_004857002.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985401|dbj|BAK81076.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 189
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ KKL+SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGKKLISPDGYDVTRPTLDRVKQSIFNIIQNELN-----RDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
S+G+E+ SRG +++ + + S L N++ TG D +
Sbjct: 56 SLGLESASRGAKKIYLCDKNDVTFS-YLEQNIKNTGLSDCA 95
>gi|317472740|ref|ZP_07932053.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
gi|316899766|gb|EFV21767.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
Length = 187
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRGC FVE
Sbjct: 55 IGIEALSRGCKHAVFVE 71
>gi|336426753|ref|ZP_08606761.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010393|gb|EGN40376.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 185
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR L +P+G D RP + +K F+ILQ G P S+ ++DL SG+G
Sbjct: 1 MRVIAGEARSLPLKTPEGQDTRPTTDRIKETLFNILQ--GDIPGSI----FVDLCSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+GIEAISRG +F E + + + NL + F D
Sbjct: 55 IGIEAISRGAKRAYFAE-NAVKAAKCIQDNLSFAKFTD 91
>gi|188587596|ref|YP_001920574.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
gi|188497877|gb|ACD51013.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
Length = 185
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 15/113 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVR 214
+G+EA SRG EV+ + E P + N I NL++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKNLKFDDFCFGLNMDSYEALR 105
>gi|258514453|ref|YP_003190675.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
gi|257778158|gb|ACV62052.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
Length = 183
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L SP + +RP + VK A F+I++ P S+ +LDL++GTG+
Sbjct: 1 MRVISGSVKGRRLKSPGNLKIRPTADRVKEALFNIIRDR--VPGSI----FLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG S V FVE + ++ NL TGF D +++
Sbjct: 55 IGIEALSRGASMVVFVEQH-YKTIQLIKENLGLTGFNDYATL 95
>gi|323691872|ref|ZP_08106126.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|355627815|ref|ZP_09049446.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
gi|323504079|gb|EGB19887.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|354820140|gb|EHF04566.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
Length = 186
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE 109
>gi|323484799|ref|ZP_08090156.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
gi|323401905|gb|EGA94246.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
Length = 186
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE 109
>gi|153853066|ref|ZP_01994475.1| hypothetical protein DORLON_00460 [Dorea longicatena DSM 13814]
gi|149753852|gb|EDM63783.1| RNA methyltransferase, RsmD family [Dorea longicatena DSM 13814]
Length = 189
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARRTQLKTLEGMDTRPTTDRIKETLFNMI------APYLYDSIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEA+SRG E FVE +P ++ V NL+ T F
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACVK-ENLQKTHF 89
>gi|440225672|ref|YP_007332763.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
gi|440037183|gb|AGB70217.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
Length = 188
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP + + + F+IL A P ++ R +D+++GTG+
Sbjct: 1 MRVVGGEFRGRSLATPKSNDIRPTADRTRESLFNILSHA--YPEAIDGTRMMDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA SRGC V FVE
Sbjct: 59 VGLEAASRGCRHVLFVE 75
>gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 179
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWTDRVEVVRGRVPEALAR 107
>gi|430002365|emb|CCF18146.1| Putative methyltransferase [Rhizobium sp.]
Length = 186
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+I+ P +L+ R +DL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTVDRTRESLFNIIGHV--YPEALQQTRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC + FVE
Sbjct: 59 VGLEALSRGCRQALFVE 75
>gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K]
gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K]
Length = 179
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALAR 107
>gi|160879469|ref|YP_001558437.1| methyltransferase [Clostridium phytofermentans ISDg]
gi|160428135|gb|ABX41698.1| methyltransferase [Clostridium phytofermentans ISDg]
Length = 185
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L +P+G+D RP + K F+ILQ +L +LDL+SG+G+
Sbjct: 1 MRVIAGKARRTLLKTPEGLDTRPTTDRTKETLFNILQ------GNLADSCFLDLFSGSGA 54
Query: 169 VGIEAISRGCS 179
+GIEA+SRG S
Sbjct: 55 IGIEALSRGAS 65
>gi|399024597|ref|ZP_10726632.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
gi|398080207|gb|EJL71029.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
Length = 192
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + KK+ +PK DVRP + K A F IL++ ++ LDL++G G
Sbjct: 1 MYRIISGKWKAKKIAAPKNFDVRPTTDFAKEALFSILENT----YDMQSISVLDLFAGIG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
S+ E SRGC +V VEM+P
Sbjct: 57 SISFEFASRGCKDVTSVEMNP 77
>gi|125973792|ref|YP_001037702.1| putative methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714017|gb|ABN52509.1| methyltransferase [Clostridium thermocellum ATCC 27405]
Length = 210
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 25 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 77
Query: 167 GSVGIEAISRGCSEVHFVE 185
GS+GIEA+SRG FV+
Sbjct: 78 GSLGIEALSRGADSAVFVD 96
>gi|222085016|ref|YP_002543545.1| methylase [Agrobacterium radiobacter K84]
gi|398381192|ref|ZP_10539302.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
gi|221722464|gb|ACM25620.1| methylase protein [Agrobacterium radiobacter K84]
gi|397719497|gb|EJK80064.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
Length = 188
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P +L R +D+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAVPKSNDIRPTADRTRESLFNILTHA--YPEALDGTRMMDIFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA SRGC V FVE
Sbjct: 59 VGLEAASRGCRHVLFVE 75
>gi|440780895|ref|ZP_20959366.1| methyltransferase [Clostridium pasteurianum DSM 525]
gi|440221483|gb|ELP60688.1| methyltransferase [Clostridium pasteurianum DSM 525]
Length = 106
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+GM+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGMETRPTLDRIKESIFSIIQN------DVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
+G+EA+SRG + + ++ P + +L N+E F +V
Sbjct: 55 LGLEAVSRGAKQCYLIDKSP-ITFPLLKKNVENLKFQNVC 93
>gi|209886354|ref|YP_002290211.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|337740107|ref|YP_004631835.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|386029124|ref|YP_005949899.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|209874550|gb|ACI94346.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
gi|336094192|gb|AEI02018.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|336097771|gb|AEI05594.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
Length = 184
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + + SP ++RP + ++ + F+IL A G PA R LDL++GTG+
Sbjct: 1 MRVVGGKMRGRSIASPASQEIRPTQDRLRESLFNILMHAYGNPAL--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + F++ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFID-NGAAARALLRNNVEALGLGGVTKVY 100
>gi|399041866|ref|ZP_10736795.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
gi|398059729|gb|EJL51573.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
Length = 186
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK +D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSIDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|326201983|ref|ZP_08191853.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
gi|325987778|gb|EGD48604.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
Length = 184
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ AS PG LDL++G+
Sbjct: 1 MLRVISGSAKGLKLSTLEGMNTRPTTDRVKENLFNII-------ASYIPGSNILDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
GS+GIEA+SRG F + + ++ NLE T +D S I + L++ Q
Sbjct: 54 GSLGIEALSRGAESAVFCDQSEQ-STEIITRNLEHTKLMDKSEIFLGEAQIILKKLSQLS 112
Query: 227 R 227
+
Sbjct: 113 K 113
>gi|332799408|ref|YP_004460907.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|438002564|ref|YP_007272307.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332697143|gb|AEE91600.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|432179358|emb|CCP26331.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 179
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSGT 166
++++GG R +K+ S GM+ RP + V+ A F+I+ S G C +LDL++GT
Sbjct: 1 MRIIGGFHRGRKIKSINGMNTRPTSDFVREALFNIIGSDVVGSC--------FLDLFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVS 192
G+VGIEA+SRG F+E +P S
Sbjct: 53 GAVGIEALSRGAQNAIFIEKNPIACS 78
>gi|254780405|ref|YP_003064818.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040082|gb|ACT56878.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 189
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R+ L +P+ +RP K A FDIL P L R L++++GTGS
Sbjct: 4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHV--YPVFLDSTRMLNIFAGTGS 61
Query: 169 VGIEAISRGCSEVHFVE 185
VG EA+SRGC V FV+
Sbjct: 62 VGFEALSRGCHYVLFVD 78
>gi|153004926|ref|YP_001379251.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028499|gb|ABS26267.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
Length = 179
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L +P+G RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGSARGRRLAAPRGEATRPTSDKVRGAVFNVLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++ +EA+SRGC+ VE D + ++ N GF + RVE + R
Sbjct: 55 ALALEALSRGCARAVCVEADRG-AAELIGRNAAACGFEGRVDVRRGRVEEVVPR 107
>gi|404370900|ref|ZP_10976215.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226912978|gb|EEH98179.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 184
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F I+Q G P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLIPPATMETRPTLDRVKEAMFSIIQ--GYIPDAV----AVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGF 204
+G+EA SRG EV+ ++ P + N I NL++ F
Sbjct: 55 LGLEAASRGAKEVYLIDKSNTTFPLLKQN--IENLKFQDF 92
>gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 179
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFDGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALAR 107
>gi|256004523|ref|ZP_05429502.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281417949|ref|ZP_06248969.1| methyltransferase [Clostridium thermocellum JW20]
gi|385778335|ref|YP_005687500.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|419722229|ref|ZP_14249377.1| methyltransferase [Clostridium thermocellum AD2]
gi|419724327|ref|ZP_14251395.1| methyltransferase [Clostridium thermocellum YS]
gi|255991528|gb|EEU01631.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281409351|gb|EFB39609.1| methyltransferase [Clostridium thermocellum JW20]
gi|316940015|gb|ADU74049.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|380772333|gb|EIC06185.1| methyltransferase [Clostridium thermocellum YS]
gi|380781800|gb|EIC11450.1| methyltransferase [Clostridium thermocellum AD2]
Length = 191
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 6 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 58
Query: 167 GSVGIEAISRGCSEVHFVE 185
GS+GIEA+SRG FV+
Sbjct: 59 GSLGIEALSRGADSAVFVD 77
>gi|114569168|ref|YP_755848.1| putative methyltransferase [Maricaulis maris MCS10]
gi|114339630|gb|ABI64910.1| putative methyltransferase [Maricaulis maris MCS10]
Length = 186
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++PKG RP + + F++++ A CPA + R D+Y+G+G+
Sbjct: 1 MRIVGGKFRNRALVAPKGKSTRPTSDRARENMFNVIEHADWCPA-IEGARVADIYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEM 186
+G+EAISRG + F+E
Sbjct: 60 LGLEAISRGAAFCLFIEF 77
>gi|331085068|ref|ZP_08334155.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408768|gb|EGG88233.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 189
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMISP------YLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG E FVE +P ++ + NL+ T + + V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMATDVMTALRRME 108
>gi|355677721|ref|ZP_09060488.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
gi|354812807|gb|EHE97421.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
Length = 185
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + K F++LQ G C ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVEGMDTRPTTDRTKETLFNMLQPQIGDC-------KFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
++GIEA+SRG + +E +P + + NLE T D + + V L++ E
Sbjct: 54 AIGIEALSRGAAMAVMIENNPKAIE-CIRENLERTKLEDRALVMNCDVLAGLKKLE 108
>gi|110802301|ref|YP_699016.1| methyltransferase [Clostridium perfringens SM101]
gi|110682802|gb|ABG86172.1| RNA methyltransferase, RsmD family [Clostridium perfringens SM101]
Length = 185
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q + +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQ------WYIPDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+G+EA SRG E + V+ P V VL N+E GF D H + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY 101
>gi|18310712|ref|NP_562646.1| hypothetical protein CPE1730 [Clostridium perfringens str. 13]
gi|110800994|ref|YP_696416.1| methyltransferase [Clostridium perfringens ATCC 13124]
gi|168207256|ref|ZP_02633261.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|168210638|ref|ZP_02636263.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|168214206|ref|ZP_02639831.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|168217016|ref|ZP_02642641.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|169342695|ref|ZP_02863736.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|182625849|ref|ZP_02953615.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|422346400|ref|ZP_16427314.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|422874650|ref|ZP_16921135.1| putative methyltransferase [Clostridium perfringens F262]
gi|18145393|dbj|BAB81436.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110675641|gb|ABG84628.1| RNA methyltransferase, RsmD family [Clostridium perfringens ATCC
13124]
gi|169299201|gb|EDS81271.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|170661356|gb|EDT14039.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|170711328|gb|EDT23510.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|170714309|gb|EDT26491.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|177908883|gb|EDT71375.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|182380973|gb|EDT78452.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|373225945|gb|EHP48272.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|380304291|gb|EIA16580.1| putative methyltransferase [Clostridium perfringens F262]
Length = 185
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q + +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQ------WYIPDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+G+EA SRG E + V+ P V VL N+E GF D H + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY 101
>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
Length = 184
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLNLKTVPGMETRPTTDRIKETLFNILQP------EMPECRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG + F E +P S + NL +T
Sbjct: 55 IGIEALSRGAAYAVFAEKNPKACS-CIRDNLSFT 87
>gi|338732009|ref|YP_004670482.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
gi|336481392|emb|CCB87991.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
Length = 192
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + KL++PKG RP +E ++ F+I C ++ +LD+++G+G+
Sbjct: 1 MRIAGGKFKNHKLIAPKGNTTRPTLEKLRQTVFNI------CQHTIEDATFLDVFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG S F+E + + +
Sbjct: 55 MGLEALSRGASHATFLEKNRLALQAI 80
>gi|420239800|ref|ZP_14744086.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
gi|398078530|gb|EJL69428.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
Length = 186
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK ++RP ++ + + F+I+ P +L GR +DL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKTNEIRPTIDRTRESLFNIIGHV--YPQALDGGRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCKSALFVE 75
>gi|409436241|ref|ZP_11263433.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
gi|408752151|emb|CCM74583.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
Length = 186
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSSDIRPTADRTRESLFNILSHA--YPECIDSTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|402308991|ref|ZP_10827987.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
gi|400373110|gb|EJP26044.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
Length = 181
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP + + + F++LQ + +LDL+SG+G+
Sbjct: 1 MRVIGGKYRGKKLIPPKNDDIRPTTDKARESLFNMLQ------YYIYESSFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
V IEAISRG V VE
Sbjct: 55 VSIEAISRGAKLVTLVE 71
>gi|149177894|ref|ZP_01856492.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
gi|148843234|gb|EDL57599.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
Length = 201
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK RR+KL S G RP+ + VK F+ L +++ R D+YSGTGS
Sbjct: 1 MRIIAGKYRRRKLHSNPGQTTRPITDFVKEVLFEWLGD------TVKDKRVADIYSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
+G+EA+SRG + V F+E D + +L N+E G D +
Sbjct: 55 LGLEALSRGAASVVFIEQD-YKAHELLKRNVENIGAEDTT 93
>gi|229829109|ref|ZP_04455178.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
gi|229792272|gb|EEP28386.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
Length = 181
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +LL+P+G+ RP + VK F+ILQ+ + +LDL++G+G
Sbjct: 1 MRVIAGSARRLQLLTPRGLKTRPTQDRVKETLFNILQN------EVEGAYFLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FV+
Sbjct: 55 MGIEALSRGARAASFVD 71
>gi|268611482|ref|ZP_06145209.1| putative methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 186
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L++P+GMDVRP + VK A F +Q + LDL++G+G
Sbjct: 1 MRVITGIARGRRLVAPEGMDVRPTTDKVKEAIFSAIQF------QIEGADVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEAISRG F++ + V NL TGF
Sbjct: 55 MGIEAISRGAKHAVFIDSSNRALRCVH-ENLRNTGF 89
>gi|218507749|ref|ZP_03505627.1| putative methylase protein [Rhizobium etli Brasil 5]
Length = 180
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPGCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|332981577|ref|YP_004463018.1| methyltransferase [Mahella australiensis 50-1 BON]
gi|332699255|gb|AEE96196.1| methyltransferase [Mahella australiensis 50-1 BON]
Length = 185
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG A+ KL PK VRP ++VK A F+IL + +LDL++GTGS
Sbjct: 1 MRITGGMAKGHKLSGPKSAGVRPTADIVKEALFNIL------APYIDETVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRG EV+FV+
Sbjct: 55 VGLEAMSRGAREVYFVD 71
>gi|118580607|ref|YP_901857.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
gi|118503317|gb|ABK99799.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
Length = 187
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RP + V+ A F I+QS L R LD+ +GTG
Sbjct: 1 MRVIAGSARGTRLAAPRGMRTRPTADRVREALFSIIQSR----YELDGARVLDMCAGTGG 56
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG S FVE D
Sbjct: 57 LGIEALSRGASTCCFVEKD 75
>gi|150390529|ref|YP_001320578.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149950391|gb|ABR48919.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
Length = 187
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L SP G+ RP + +K + F+I+Q+ + +DL+SG GS
Sbjct: 1 MRVIAGKAKGYRLQSPIGLQTRPTADRIKESLFNIIQN------DILHSTVIDLFSGAGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG ++ +F++ V + NL T +D++ I
Sbjct: 55 LGIEALSRGANQAYFIDQSKNSVQAIK-ENLVRTKLIDLAEI 95
>gi|15895014|ref|NP_348363.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum ATCC
824]
gi|337736955|ref|YP_004636402.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum DSM
1731]
gi|384458462|ref|YP_005670882.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|15024705|gb|AAK79703.1|AE007683_2 N6-adenine-specific methylase [Clostridium acetobutylicum ATCC 824]
gi|325509151|gb|ADZ20787.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|336292932|gb|AEI34066.1| N6-adenine-specific methylase [Clostridium acetobutylicum DSM 1731]
Length = 188
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 14/113 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K+L PKGM+ RP ++ VK A F+I+Q+ P ++ LD++SGTG
Sbjct: 1 MRIISGKAKGRKILPPKGMETTRPTLDRVKEAMFNIIQN--DVPEAV----VLDMFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVR 214
S+G+EA SRG + ++ P + +L N+E F L++ S VR
Sbjct: 55 SLGLEAASRGAKVCYLIDKSP-ITYPILKENVENLRFDEECKTLNMDSYEAVR 106
>gi|91202800|emb|CAJ72439.1| similar to protein relase factor 2 methylase (HemK) [Candidatus
Kuenenia stuttgartiensis]
Length = 198
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 16/119 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTG 167
++V+ G A+ L SPKG RP+ + VK + F+IL A + P R LDLY+GTG
Sbjct: 1 MRVIAGSAKGILLCSPKGNKTRPIPDNVKESLFNIL-------AEIIPDSRVLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-----FLER 221
+VGIEA+SRG FVE + + ++ N+ T L+ S TVR + FLE+
Sbjct: 54 AVGIEALSRGAKSCLFVENGTFAIQSIK-KNISATKLLNKSV--TVRCDVLKTIPFLEQ 109
>gi|333897205|ref|YP_004471079.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112470|gb|AEF17407.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 192
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ A + +LDL+SGTGS
Sbjct: 1 MRVISGMAKGRKLKCPPGRAIRPTSDMVKESLFNIIS------ADIYDSIFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSI 210
+GIEA+SRG + +FVE V +N+ + N++ G +D + I
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYINDNVKLLGSIDSAVI 95
>gi|405377184|ref|ZP_11031129.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
gi|397326281|gb|EJJ30601.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
Length = 186
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|91975754|ref|YP_568413.1| hypothetical protein RPD_1274 [Rhodopseudomonas palustris BisB5]
gi|91682210|gb|ABE38512.1| conserved hypothetical protein 95 [Rhodopseudomonas palustris
BisB5]
Length = 185
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P S R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDPIS--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG FV+ + +L N+E G ++ ++
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGITKVY 100
>gi|402490144|ref|ZP_10836933.1| methylase [Rhizobium sp. CCGE 510]
gi|401810170|gb|EJT02543.1| methylase [Rhizobium sp. CCGE 510]
Length = 186
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|337287802|ref|YP_004627274.1| methyltransferase [Thermodesulfobacterium sp. OPB45]
gi|334901540|gb|AEH22346.1| methyltransferase [Thermodesulfobacterium geofontis OPF15]
Length = 185
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 109 LQVLGGKARRKKLLSP-KGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+Q+ GG + +KL+ P K +D +RP+ ++ A FDIL +L + LDL++GT
Sbjct: 1 MQITGGFLKGRKLVCPSKDLDFIRPLRTRIRKALFDILGQ------NLSDLKVLDLFAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
G++GIEAISRG S FV+ P +S ++ NLE LD + + +
Sbjct: 55 GALGIEAISRGASFAVFVDNSPISIS-IIKKNLERFNLLDKAQVFKL 100
>gi|86356482|ref|YP_468374.1| methylase [Rhizobium etli CFN 42]
gi|86280584|gb|ABC89647.1| putative methylase protein [Rhizobium etli CFN 42]
Length = 186
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|86748297|ref|YP_484793.1| hypothetical protein RPB_1172 [Rhodopseudomonas palustris HaA2]
gi|86571325|gb|ABD05882.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 187
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDP--IGDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG FV+ + +L N+E G VS ++
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGVSKVY 100
>gi|237833115|ref|XP_002365855.1| hypothetical protein TGME49_072210 [Toxoplasma gondii ME49]
gi|211963519|gb|EEA98714.1| hypothetical protein TGME49_072210 [Toxoplasma gondii ME49]
gi|221508825|gb|EEE34394.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 364
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+ DVRPMM VK A F +LQ G GC + R LDL+SG+
Sbjct: 42 LHVVGGRLGGRRLMMPRRGDVRPMMAKVKEALFSMLQRMGVLGCVGE-QQLRVLDLFSGS 100
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G + S I VE L E+
Sbjct: 101 GALSVEAFSRGAQWALLTDSSLDSCEAATV---NMQYCGVAERSYIVRASVEELLLVPER 157
Query: 225 FCR 227
+ R
Sbjct: 158 YMR 160
>gi|190890545|ref|YP_001977087.1| methylase [Rhizobium etli CIAT 652]
gi|190695824|gb|ACE89909.1| putative methylase protein [Rhizobium etli CIAT 652]
Length = 186
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|330837737|ref|YP_004412378.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
gi|329749640|gb|AEC02996.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
Length = 200
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + +L P G+ +RP M+ ++ + F IL S G +LDL+SG+G
Sbjct: 1 MRITGGRYRGRTILCPPGV-IRPAMDRMRESLFSILGSLDGHS-------FLDLFSGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
VGIEA SRG VH +EMD + +V++ N+ +
Sbjct: 53 VGIEAASRGAEPVHLIEMDK-LKKDVILKNISFV 85
>gi|221488319|gb|EEE26533.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 364
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+ DVRPMM VK A F +LQ G GC + R LDL+SG+
Sbjct: 42 LHVVGGRLGGRRLMMPRRGDVRPMMAKVKEALFSMLQRMGVLGCVGE-QQLRVLDLFSGS 100
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G + S I VE L E+
Sbjct: 101 GALSVEAFSRGAQWALLTDSSLDSCEAATV---NMQYCGVAERSYIVRASVEELLLVPER 157
Query: 225 FCR 227
+ R
Sbjct: 158 YMR 160
>gi|399924351|ref|ZP_10781709.1| RsmD family RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 188
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ G R KL +PKGMD RP + VK + F+IL Q+ G LDL+ G+G
Sbjct: 1 MRIISGNRRGLKLRAPKGMDTRPTEDRVKESVFNILGQNFDGDIV-------LDLFCGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+ GIE ISRG +V+FV+ + V NLE FL+ V +E ++ +A
Sbjct: 54 ANGIEFISRGAEKVYFVDNSKEAIDCVK-SNLEKARFLN----QAVVIENYMNKA 103
>gi|168334445|ref|ZP_02692620.1| hypothetical protein Epulo_05694 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 182
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP+G++ RP + +K F+I+ L +LDL+SG+G
Sbjct: 1 MRIISGKFRGTKLLSPEGLNTRPTTDRIKETLFNIIN------FDLLECSFLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 55 IGIEALSRGAKTATFVE 71
>gi|421590335|ref|ZP_16035353.1| methylase [Rhizobium sp. Pop5]
gi|403704531|gb|EJZ20390.1| methylase [Rhizobium sp. Pop5]
Length = 186
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|295102282|emb|CBK99827.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
L2-6]
Length = 190
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G D+ RP ++ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDITRPTLDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+GIEA+SRG + F++ + V N+++ N + G D S ++ FL EQF
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARFLSACREQF 112
>gi|255524278|ref|ZP_05391237.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296185397|ref|ZP_06853807.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
gi|255512103|gb|EET88384.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296050231|gb|EFG89655.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
Length = 186
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G A+ +K++SP GMD RP ++ VK A F+I+Q+ +L D++SGTG
Sbjct: 1 MRIIAGLAKGRKIMSPIGMDTTRPTLDRVKEAMFNIIQNKTYGSIAL------DVFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
S+G+EA SRG + + V+ P S L+ N+E F + + ++++ + E+F R
Sbjct: 55 SLGLEAASRGAKQCYLVDRSPETYS-FLVKNVENLKFQQIC--KCINMDSY-KALEEFAR 110
>gi|414163862|ref|ZP_11420109.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
gi|410881642|gb|EKS29482.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
Length = 185
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRMRGRNIASPASKDIRPTQDRLRESVFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG S F++ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGASFALFID-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|210615577|ref|ZP_03290675.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
gi|210150244|gb|EEA81253.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
Length = 196
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
+++V+ G A+R +L + G+D RP + +K F+++ + A C +LDL+SG
Sbjct: 12 IMRVIAGSAKRLQLKTIDGLDTRPTTDRIKETLFNMISHEIADSC--------FLDLFSG 63
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G++GIEA+SRG E FVE + ++ + NL +T S + + V + L+R E
Sbjct: 64 SGAIGIEALSRGAKEAVFVEQNRKAMACIR-ENLTFTKLAKQSVLLEMDVLSALKRLE 120
>gi|420155020|ref|ZP_14661891.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
gi|394759862|gb|EJF42525.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
Length = 183
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KKL S +G VRP + VK A F+I+Q L R LDL++G+G
Sbjct: 1 MRIITGAARGKKLQSLEGERVRPTPDRVKEALFNIIQF------DLEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA+SRG E FV+ + V+ N+ TGF + + + +FL R Q
Sbjct: 55 LGLEALSRGAQEAVFVD-SSRDSAGVVERNIAATGFGERAKVVNADFASFLSRNPQ 109
>gi|379012002|ref|YP_005269814.1| methyltransferase [Acetobacterium woodii DSM 1030]
gi|375302791|gb|AFA48925.1| methyltransferase [Acetobacterium woodii DSM 1030]
Length = 198
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++++ G+ R KKL+S G +RP + VKGA F+ LQ+ +R R ++DL+SGTG
Sbjct: 1 MRIIAGEKRGKKLVSITGNKIRPTTDKVKGAIFNSLQN------EIRDARIFVDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEM 186
++G+EA+SRG + +F ++
Sbjct: 55 AMGLEALSRGVEKAYFFDV 73
>gi|406591954|ref|YP_006739134.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|406594041|ref|YP_006741287.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|410858122|ref|YP_006974062.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|405782473|gb|AFS21221.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|405787826|gb|AFS26569.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|410811017|emb|CCO01660.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
Length = 187
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A ++ +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVKDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG S V FV+ V S +L PNL T
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT 94
>gi|15888033|ref|NP_353714.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|15155651|gb|AAK86499.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 185
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|121533820|ref|ZP_01665647.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
gi|121307811|gb|EAX48726.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
Length = 163
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+ DVRP + VK + F+IL S + LDL++GTG+
Sbjct: 1 MRIITGSAKGTKLKTPRSFDVRPTADRVKESIFNILGSV------VLDADVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G+EA+SRG FV+ P ++ ++ N+ T D + ++ +++RA Q
Sbjct: 55 LGLEAVSRGAKSAIFVDNSPASIA-LIKENIIRTKSADRTHVYKSDALRYIDRAAQL 110
>gi|335035519|ref|ZP_08528860.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
gi|333793286|gb|EGL64642.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
Length = 185
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|187934826|ref|YP_001885427.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
gi|187722979|gb|ACD24200.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
Length = 185
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 15/113 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVR 214
+G+EA SRG EV+ + E P + N I +L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKSLKFDDFCFGLNMDSYEALR 105
>gi|325292074|ref|YP_004277938.1| methyltransferase [Agrobacterium sp. H13-3]
gi|325059927|gb|ADY63618.1| methyltransferase [Agrobacterium sp. H13-3]
Length = 185
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|418410794|ref|ZP_12984099.1| methyltransferase [Agrobacterium tumefaciens 5A]
gi|358002913|gb|EHJ95249.1| methyltransferase [Agrobacterium tumefaciens 5A]
Length = 185
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|251780095|ref|ZP_04823015.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084410|gb|EES50300.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 185
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 15/113 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVR 214
+G+EA SRG EV+ + E P + N I L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKKLKFDDFCFGLNMDSYEALR 105
>gi|291563379|emb|CBL42195.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SS3/4]
Length = 186
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F++LQ+ L R+LDL++G+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGMETRPTTDRIKETLFNMLQN------DLYGARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG E FV+
Sbjct: 55 IGIEALSRGAKEAVFVD 71
>gi|224532821|ref|ZP_03673436.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225548532|ref|ZP_03769580.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226320947|ref|ZP_03796495.1| putative methyltransferase [Borrelia burgdorferi 29805]
gi|224512210|gb|EEF82596.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225370795|gb|EEH00230.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226233649|gb|EEH32382.1| putative methyltransferase [Borrelia burgdorferi 29805]
Length = 189
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + + L+ N + G + R E FL + + F
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSFVG--EFYKFFFQRAEDFLSKKDLF 119
>gi|358067394|ref|ZP_09153873.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
gi|356694310|gb|EHI55972.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
Length = 189
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G + RP ++VK F+++ L R+LDL++G+G+
Sbjct: 1 MRVIAGTARRLLLKTPVGKNTRPTSDIVKETLFNMIND------KLYKARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG FVE D
Sbjct: 55 IGIEALSRGADMAVFVEND 73
>gi|374855681|dbj|BAL58536.1| N6-adenine-specific methylase [uncultured candidate division OP1
bacterium]
Length = 189
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
++++GG+ R + L+ P +RPM E V+ A FDIL S+ R+LDL++G
Sbjct: 1 MRIIGGRLRGRLLIEPTPQIKKFLRPMREAVRAALFDILGD------SVTDARFLDLFAG 54
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLER 221
TGS+GIEA+SRG FV+ ++ NL+ G +S++ + +E F +
Sbjct: 55 TGSIGIEALSRGARSCVFVDSSE-RACQIIRENLKNLGLERCASVYRLDALKAIELFARQ 113
Query: 222 AEQF 225
E+F
Sbjct: 114 GEKF 117
>gi|418296514|ref|ZP_12908357.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538689|gb|EHH07931.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 185
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|313892650|ref|ZP_07826237.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|329121287|ref|ZP_08249914.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
gi|313119047|gb|EFR42252.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|327470221|gb|EGF15684.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
Length = 186
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +L SP+GM+ RP + V+ + F++L + G L LD+++GTG+
Sbjct: 1 MKIIAGTAKGTQLKSPEGMNTRPTLGKVRESIFNVLSNVG-----LLETNILDIFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+G+EA+SRG S F++ V +NV+ N F + I V T L+
Sbjct: 56 MGLEALSRGASTATFIDK---VTANVIKENANRCKFTNKVEILKKEVHTALK 104
>gi|424909578|ref|ZP_18332955.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392845609|gb|EJA98131.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 185
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|313114873|ref|ZP_07800372.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622823|gb|EFQ06279.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 222
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR + L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 28 MRVIAGEARGRSLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L EQF
Sbjct: 82 QLGIEALSRGAARCVFLDENREAV-NIIMRNCKACGVFDRSRVNIGEAARYLSACREQF 139
>gi|363891848|ref|ZP_09319023.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
gi|361964843|gb|EHL17849.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
Length = 184
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|448748029|ref|ZP_21729678.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
gi|445564424|gb|ELY20545.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
Length = 224
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 45 LRIIGGEFRRRQLPVLDSPGLRPTPDRVRETLFNWLGQ------QLYGQQVLDLFAGTGA 98
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG S V FVE DP V + L NL + + S++H V+T+L R
Sbjct: 99 LGIEAVSRGASWVDFVERDPRVAAQ-LSTNLA-SLNITASAVHVNDVQTYLTR 149
>gi|363891046|ref|ZP_09318329.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM5]
gi|361962013|gb|EHL15162.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM5]
Length = 184
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|417859038|ref|ZP_12504095.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
gi|338825042|gb|EGP59009.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
Length = 185
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEALSRGCRVALFVE 75
>gi|289422316|ref|ZP_06424166.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
gi|289157261|gb|EFD05876.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
Length = 186
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG S V+F + DP
Sbjct: 55 LGIEALSRGASHVYFCDKDP 74
>gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47_FAA]
gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47FAA]
Length = 185
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + GMD RP + +K F++LQ GC ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVDGMDTRPTTDRIKETLFNMLQPQIPGC-------QFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
++GIEA+SRG +E +P V+ + NL T + + + V T L+R E
Sbjct: 54 AIGIEALSRGADLAVMIENNPQAVACIR-ENLGTTRLEERAVVMACDVLTGLKRLE 108
>gi|253700934|ref|YP_003022123.1| methyltransferase [Geobacter sp. M21]
gi|251775784|gb|ACT18365.1| methyltransferase [Geobacter sp. M21]
Length = 193
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+GIEA+SRG F++ + + NLE T F + + T
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFAEKGKVVT 100
>gi|39934241|ref|NP_946517.1| N-6 adenine-specific DNA methylase [Rhodopseudomonas palustris
CGA009]
gi|39648089|emb|CAE26609.1| N-6 Adenine-specific DNA methylase:Conserved hypothetical protein
95 [Rhodopseudomonas palustris CGA009]
Length = 193
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 6 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 64 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVY 105
>gi|430747935|ref|YP_007207064.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019655|gb|AGA31369.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ 109
>gi|115522954|ref|YP_779865.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115516901|gb|ABJ04885.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
Length = 203
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V+GG+ + + + SP +RP + ++ A F+IL A G P + R +DL++GTG
Sbjct: 19 LMRVVGGRLKGRNIASPSSQAIRPTQDRLREALFNILAHAYGNP--MLDARVIDLFAGTG 76
Query: 168 SVGIEAISRGCSEVHFVE 185
++GIEA+SRG S FV+
Sbjct: 77 ALGIEAVSRGASFALFVD 94
>gi|402839250|ref|ZP_10887743.1| RNA methyltransferase, RsmD family [Eubacteriaceae bacterium OBRC8]
gi|402270789|gb|EJU20047.1| RNA methyltransferase, RsmD family [Eubacteriaceae bacterium OBRC8]
Length = 184
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|322436446|ref|YP_004218658.1| methyltransferase [Granulicella tundricola MP5ACTX9]
gi|321164173|gb|ADW69878.1| methyltransferase [Granulicella tundricola MP5ACTX9]
Length = 203
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R + L +P+G+++RP + ++ F+IL + LR R+ DLY+GTG+
Sbjct: 1 MRVIAGKYRSRALTAPEGLEIRPTSDRLRETMFNILAA----RMELRGCRFADLYAGTGA 56
Query: 169 VGIEAISRGCSEVHFVE 185
VGIEAISRG + F E
Sbjct: 57 VGIEAISRGATHCWFGE 73
>gi|218962130|ref|YP_001741905.1| hypothetical protein CLOAM1872 [Candidatus Cloacamonas
acidaminovorans]
gi|167730787|emb|CAO81699.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 215
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G +++ L GM RP + F +LQ GC R LDL++G+GS
Sbjct: 26 MRIITGIYKKRNLFLVPGMSTRPTSSFNREVIFSVLQDYAGC-------RVLDLFAGSGS 78
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+E +SRG V FVE P + N ++ N+ G + + +V+ +L+ E
Sbjct: 79 LGLETLSRGAVWVDFVEFAPSAI-NTILQNINLLGCSENCHLWRKKVDVYLKSCEN 133
>gi|430747928|ref|YP_007207057.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019648|gb|AGA31362.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ 109
>gi|62184779|ref|YP_219564.1| hypothetical protein CAB134 [Chlamydophila abortus S26/3]
gi|62147846|emb|CAH63592.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG + V FV+ V S +L PNL T
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT 94
>gi|222056365|ref|YP_002538727.1| methyltransferase [Geobacter daltonii FRC-32]
gi|221565654|gb|ACM21626.1| methyltransferase [Geobacter daltonii FRC-32]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL SPK M VRP + VK + F+IL + L R LD+++GTGS
Sbjct: 1 MRIISGSAKGRKLASPKDMRVRPTADRVKESLFNILTN---LMDDLSAVRTLDIFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIE +SRG + FV+ + + ++ NL+ GF + S +
Sbjct: 58 LGIEMLSRGGAYAVFVD-NHRQSAAMIAKNLQMLGFAEKSRL 98
>gi|358063819|ref|ZP_09150419.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
gi|356697956|gb|EHI59516.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
Length = 185
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 10/88 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR-PG-RWLDLYSGT 166
++V+ G ARR L + +G+D RP + +K F+++ +LR PG +LDL+SG+
Sbjct: 1 MRVIAGSARRLNLKTIEGLDTRPTTDRIKETLFNMI--------NLRLPGSTFLDLFSGS 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G +GIEA+SRG + FVE +P V +
Sbjct: 53 GGIGIEALSRGAVQAVFVEQNPKAVECI 80
>gi|329942454|ref|ZP_08291264.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|332287094|ref|YP_004421995.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|384450235|ref|YP_005662835.1| Methylase [Chlamydophila psittaci 6BC]
gi|384451241|ref|YP_005663839.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|384452217|ref|YP_005664814.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|384453191|ref|YP_005665787.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|384454169|ref|YP_005666764.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|392376347|ref|YP_004064125.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|406593064|ref|YP_006740243.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|407453622|ref|YP_006732730.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|407454957|ref|YP_006733848.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|407456323|ref|YP_006734896.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|407457689|ref|YP_006735994.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|407460307|ref|YP_006738082.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|449070780|ref|YP_007437860.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
gi|313847690|emb|CBY16678.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507367|gb|ADZ19005.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|328815364|gb|EGF85352.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|328914329|gb|AEB55162.1| Methylase [Chlamydophila psittaci 6BC]
gi|334691972|gb|AEG85191.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|334692951|gb|AEG86169.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|334693926|gb|AEG87143.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|334694906|gb|AEG88122.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|405780381|gb|AFS19131.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|405781500|gb|AFS20249.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|405783584|gb|AFS22331.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|405785227|gb|AFS23973.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|405787290|gb|AFS26034.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|405788936|gb|AFS27678.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|449039288|gb|AGE74712.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
Length = 187
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG S V FV+ V S +L PNL T
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT 94
>gi|335039528|ref|ZP_08532688.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
gi|334180596|gb|EGL83201.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
Length = 190
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F+++ + R G LDL++GTGS
Sbjct: 1 MRVISGTFKGRRLTAVPGHHTRPTADRVKEAIFNLIPDD-----TYRDGTGLDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRGC + F++ P V V+ NL+ G + S ++
Sbjct: 56 LGIEALSRGCRRMIFIDHHPMAVK-VIYQNLKALGLSENSEVY 97
>gi|410584622|ref|ZP_11321724.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
gi|410504208|gb|EKP93720.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
Length = 199
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLKVPAGRQVRPTTDRVRQALFNILGRA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+ IEA+SRG E +E DP VV+ VL NL
Sbjct: 55 LAIEALSRGAREALCIESDPRVVA-VLKANLH 85
>gi|385799672|ref|YP_005836076.1| methyltransferase [Halanaerobium praevalens DSM 2228]
gi|309389036|gb|ADO76916.1| methyltransferase [Halanaerobium praevalens DSM 2228]
Length = 179
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA KL S KG DVRP ++ VK + F+I+ A P LDL+SG G+
Sbjct: 1 MRIIAGKAGGLKLKSLKGRDVRPTLDRVKESMFNII--AFYLP----EAEVLDLFSGFGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SR + FVE+ + N++ NL L+ + ++ V ++L+ + +
Sbjct: 55 LGIEALSRRAKKADFVELKQAHL-NIIEENLNKAKLLEKADLYQQDVYSYLKNSNK 109
>gi|192289767|ref|YP_001990372.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
gi|192283516|gb|ACE99896.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
Length = 188
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVY 100
>gi|424824828|ref|ZP_18249815.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
gi|333409927|gb|EGK68914.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
Length = 187
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG + V FV+ V S +L PNL T
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT 94
>gi|257438106|ref|ZP_05613861.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
gi|257199437|gb|EEU97721.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
Length = 189
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G ++ RP M+ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTEITRPTMDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L EQF
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARYLSACHEQF 112
>gi|390934839|ref|YP_006392344.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570340|gb|AFK86745.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 194
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ + +LDL+SGTGS
Sbjct: 1 MRVISGIAKGRKLKCPPGKAIRPTSDMVKESLFNII------GIDIYEATFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLD 206
VGIEA+SRG + +FVE V +N+ + N++ G +D
Sbjct: 55 VGIEALSRGANICYFVEK---VYNNIKYIYDNVKLLGSID 91
>gi|254976148|ref|ZP_05272620.1| hypothetical protein CdifQC_12574 [Clostridium difficile QCD-66c26]
gi|255093538|ref|ZP_05323016.1| hypothetical protein CdifC_12879 [Clostridium difficile CIP 107932]
gi|255315281|ref|ZP_05356864.1| hypothetical protein CdifQCD-7_13052 [Clostridium difficile
QCD-76w55]
gi|255517949|ref|ZP_05385625.1| hypothetical protein CdifQCD-_12616 [Clostridium difficile
QCD-97b34]
gi|255651065|ref|ZP_05397967.1| hypothetical protein CdifQCD_12831 [Clostridium difficile
QCD-37x79]
gi|260684131|ref|YP_003215416.1| hypothetical protein CD196_2397 [Clostridium difficile CD196]
gi|260687790|ref|YP_003218924.1| hypothetical protein CDR20291_2444 [Clostridium difficile R20291]
gi|306520921|ref|ZP_07407268.1| hypothetical protein CdifQ_14881 [Clostridium difficile QCD-32g58]
gi|384361773|ref|YP_006199625.1| hypothetical protein CDBI1_12425 [Clostridium difficile BI1]
gi|260210294|emb|CBA64593.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213807|emb|CBE05773.1| conserved hypothetical protein [Clostridium difficile R20291]
Length = 184
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 19/111 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNV---------LIPNLEWTGFLD 206
+GIE +SRG FV++ V SNV +I NL++ +D
Sbjct: 55 LGIECLSRGAKSCTFVDISKESIDIVKSNVKKARVESESIILNLDFKTAID 105
>gi|373470131|ref|ZP_09561276.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763099|gb|EHO51598.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 184
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LD+++G+G
Sbjct: 1 MRVISGTARSLILKTPKGNLTRPTTDKIKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG +V+F ++D V + NL T FLD + + E+ L++
Sbjct: 55 IGIEALSRGAKKVYFCDIDREAVE-CIKYNLAHTKFLDRAVVMKGSFESNLDK 106
>gi|197118275|ref|YP_002138702.1| DNA methyltransferase [Geobacter bemidjiensis Bem]
gi|197087635|gb|ACH38906.1| DNA methyltransferase, putative [Geobacter bemidjiensis Bem]
Length = 193
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+GIEA+SRG F++ + + NLE T F + + T
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFTEKGKVVT 100
>gi|159897268|ref|YP_001543515.1| methyltransferase [Herpetosiphon aurantiacus DSM 785]
gi|159890307|gb|ABX03387.1| putative methyltransferase [Herpetosiphon aurantiacus DSM 785]
Length = 191
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L P + RPM++ VK + F IL+ GR LDL++GTGS
Sbjct: 1 MRVITGSAKGRQLKGPPDIGTRPMLDRVKESLFGILEGFNAFE-----GRALDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIE +SRG FVE V + V NL+ T + + + V V+ FL+ ++
Sbjct: 56 LGIECLSRGAEWADFVEARSHVAA-VTKDNLKTTKLAERAKVWNVSVDKFLQIIDE 110
>gi|160933338|ref|ZP_02080726.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
gi|156867215|gb|EDO60587.1| RNA methyltransferase, RsmD family [Clostridium leptum DSM 753]
Length = 210
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ ++V+ G AR ++L + +G +VRP E +K A F I+Q + R+LDL++G
Sbjct: 25 EKAMRVITGSARGRRLQTLEGQEVRPTPERIKEAVFSIIQ------FQIEGRRFLDLFAG 78
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G +GIEA+SRG E FV+ V ++ NLE TG
Sbjct: 79 SGQMGIEALSRGAREAVFVDSRKDSV-QIIRENLEKTGL 116
>gi|226525311|gb|ACO70910.1| conserved hypothetical protein [uncultured Verrucomicrobia
bacterium]
Length = 187
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +P+ D+RP M+ V+GA FD L A P + R LDL++G+G+
Sbjct: 1 MRVIAGTAGGIPLHTPR-TDLRPTMDKVRGAIFDSLGDA--VPGA----RVLDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+G+EA+SRG + V FVE D V+ + N E T ++ V +FL+R
Sbjct: 54 LGLEALSRGAASVTFVEKDRAAVATIHR-NFEKTRL--SGTVQAADVFSFLDR 103
>gi|209548085|ref|YP_002280002.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533841|gb|ACI53776.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 186
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|299116748|emb|CBN74861.1| putative S-adenosylmethionine-dependent methyltransferase
[Ectocarpus siliculosus]
Length = 363
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 87 GRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS 146
GR K+ E+ + L+V GG A+ ++L SP + +RPMM VK A F L
Sbjct: 129 GRPGKVRPQGEEREVSINNAARLKVAGGIAKGRRLESPD-VFLRPMMAKVKEALFSTLMG 187
Query: 147 AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
G R+LDL+SG+GSVGIEA+SRG FV+ +V + N GF D
Sbjct: 188 FG--VFETEDARFLDLFSGSGSVGIEALSRGAGHATFVDF-AKDCCDVCLRNANLCGFSD 244
>gi|424915334|ref|ZP_18338698.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392851510|gb|EJB04031.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 186
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|302874761|ref|YP_003843394.1| methyltransferase [Clostridium cellulovorans 743B]
gi|307690624|ref|ZP_07633070.1| methyltransferase [Clostridium cellulovorans 743B]
gi|302577618|gb|ADL51630.1| methyltransferase [Clostridium cellulovorans 743B]
Length = 185
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +K+LSP M+ RP ++ VK + F I+Q+ + D++SGTGS
Sbjct: 1 MRIISGLAKGRKILSPDSMETRPTLDRVKESIFSIIQN------KIYDATVTDIFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209
+G+EA SRG + + V+ P L N+E F D+ +
Sbjct: 55 LGLEAASRGAKQCYLVDRSPSAYG-YLQKNVENLKFQDICT 94
>gi|126700177|ref|YP_001089074.1| hypothetical protein CD630_25590 [Clostridium difficile 630]
gi|255101721|ref|ZP_05330698.1| hypothetical protein CdifQCD-6_12989 [Clostridium difficile
QCD-63q42]
gi|255307590|ref|ZP_05351761.1| hypothetical protein CdifA_13437 [Clostridium difficile ATCC 43255]
gi|423084312|ref|ZP_17072817.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|423088007|ref|ZP_17076392.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|423092587|ref|ZP_17080391.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
gi|115251614|emb|CAJ69447.1| conserved hypothetical protein [Clostridium difficile 630]
gi|357542617|gb|EHJ24659.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|357543535|gb|EHJ25552.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|357553457|gb|EHJ35204.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+GIE +SRG FV++
Sbjct: 55 LGIECLSRGAKSCTFVDI 72
>gi|407458935|ref|YP_006737038.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
gi|405786226|gb|AFS24971.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
Length = 187
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG S V F++ V S +L PNL T
Sbjct: 55 VGFEALSRGASSVTFIDSSAQSVRLIRANSQLLNPNLPIT 94
>gi|163814172|ref|ZP_02205564.1| hypothetical protein COPEUT_00326 [Coprococcus eutactus ATCC 27759]
gi|158450621|gb|EDP27616.1| RNA methyltransferase, RsmD family [Coprococcus eutactus ATCC
27759]
Length = 189
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGT 166
+++V+ G+AR KL++ MD RP + +K F++L GC +LDL+SG+
Sbjct: 1 MMRVIAGRARSLKLVTVDSMDTRPTTDRIKETLFNVLSPDIPGCS-------FLDLFSGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFLERAE 223
G++GIEA+SRG FVE + + NL++T D V S V LER +
Sbjct: 54 GAIGIEALSRGAKRAVFVENGRKALE-CINKNLDFTKLRDGAQVLSTDAVSAVNTLERQK 112
Query: 224 Q 224
Sbjct: 113 D 113
>gi|255656537|ref|ZP_05401946.1| hypothetical protein CdifQCD-2_12754 [Clostridium difficile
QCD-23m63]
gi|296450012|ref|ZP_06891776.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296878393|ref|ZP_06902401.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
gi|296261282|gb|EFH08113.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296430691|gb|EFH16530.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
Length = 184
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+GIE +SRG FV++
Sbjct: 55 LGIECLSRGAKACTFVDI 72
>gi|218682692|ref|ZP_03530293.1| hypothetical protein RetlC8_28133 [Rhizobium etli CIAT 894]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPDCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|424880212|ref|ZP_18303844.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392516575|gb|EIW41307.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|333978692|ref|YP_004516637.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822173|gb|AEG14836.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 187
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A++ +L P+G RP + VK + F+IL P S +LDLY+GTG+
Sbjct: 1 MRVIAGVAKKSRLKIPRGWSGRPTADRVKESLFNILGPR--IPGS----HFLDLYAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
VGIEA+SRG + V FVE D V ++ NL G + + +
Sbjct: 55 VGIEALSRGAARVVFVERDKRAV-KIIRDNLVHVGLAERAEV 95
>gi|254293359|ref|YP_003059382.1| methyltransferase [Hirschia baltica ATCC 49814]
gi|254041890|gb|ACT58685.1| methyltransferase [Hirschia baltica ATCC 49814]
Length = 205
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + +++P+G D RP + + A F+IL A P + R +DLY+G+G+
Sbjct: 1 MRIVSGKLKGRSIITPEGRDTRPTSDRAREAMFNILAHAAWAP-PIEDARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG S FVE
Sbjct: 60 LGFEALSRGASYCLFVE 76
>gi|429728032|ref|ZP_19262777.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
gi|429150704|gb|EKX93601.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG S V+F + DP
Sbjct: 55 LGVEALSRGASHVYFCDKDP 74
>gi|260437135|ref|ZP_05790951.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
gi|292810447|gb|EFF69652.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
Length = 183
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G R L +P GMD RP + K F++LQ+ PG +LDL++G+G
Sbjct: 1 MRVIAGTRRSMPLKAPVGMDTRPTQDRTKETLFNVLQNE-------IPGAEFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
++ IEA+SRG S VE + VS + NL +T F D +++
Sbjct: 54 AISIEALSRGASHATLVENNKNAVS-CIKDNLIFTKFSDEATL 95
>gi|241203271|ref|YP_002974367.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857161|gb|ACS54828.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|116250667|ref|YP_766505.1| hypothetical protein RL0893 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255315|emb|CAK06390.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|424888461|ref|ZP_18312064.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174010|gb|EJC74054.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|373106314|ref|ZP_09520617.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
gi|371652689|gb|EHO18097.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
Length = 189
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G + RP + +K F++LQ+ P S R+LDL+ G+G
Sbjct: 1 MRVIAGNARRLLLKTLPGDETRPTTDRIKETLFNMLQAE--IPGS----RFLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ IEA+SRG S VE +P + ++ NLE T D + + T+ + R
Sbjct: 55 IAIEALSRGASAAVIVEKNPK-AARIIRENLEHTHLDDRAELLTIDASAAITR 106
>gi|222147688|ref|YP_002548645.1| hypothetical protein Avi_0907 [Agrobacterium vitis S4]
gi|221734676|gb|ACM35639.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTDAIRPTIDRTRESLFNILMHA--HPECLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRGC FVE
Sbjct: 59 IGLEALSRGCRSALFVE 75
>gi|160944906|ref|ZP_02092133.1| hypothetical protein FAEPRAM212_02422 [Faecalibacterium prausnitzii
M21/2]
gi|158444090|gb|EDP21094.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
M21/2]
Length = 191
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+GIEA+SRG + F++ VS +++ N + G D S ++ FL EQF
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACREQF 112
>gi|387219991|gb|AFJ69704.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422292740|gb|EKU20042.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422293042|gb|EKU20343.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
Length = 363
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG AR K+L SP+ + +RPMM V+ A F L S + RP R +DL+ G GS
Sbjct: 134 LRIIGGSARGKRLDSPE-VHLRPMMSKVREALFSTLFSFDLFGS--RPPRVMDLFCGAGS 190
Query: 169 VGIEAISRGCSEVHFVEM 186
VG+EA+SRG E FV+M
Sbjct: 191 VGLEALSRGAGEAVFVDM 208
>gi|424873903|ref|ZP_18297565.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393169604|gb|EJC69651.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|299134223|ref|ZP_07027416.1| methyltransferase [Afipia sp. 1NLS2]
gi|298590970|gb|EFI51172.1| methyltransferase [Afipia sp. 1NLS2]
Length = 185
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPASKDIRPTQDRLRESIFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + F++ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGATFTLFID-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|424898491|ref|ZP_18322065.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393182718|gb|EJC82757.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
VG+EA+SRGC FVE
Sbjct: 59 VGLEAVSRGCRHALFVE 75
>gi|354614287|ref|ZP_09032161.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
gi|353221349|gb|EHB85713.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
Length = 123
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 8/98 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E V+ A F+ L +AG LR R LDLY+G+
Sbjct: 1 MTRIVAGRAGGRTLSVPPKG--TRPTSERVREALFNALDAAG----DLRGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
G++G+EA+SRG ++ FVE D V VL NL G
Sbjct: 55 GALGLEALSRGAADAEFVESDRAAV-RVLRDNLARVGL 91
>gi|238916967|ref|YP_002930484.1| hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
gi|238872327|gb|ACR72037.1| Hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
Length = 186
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G AR L + +G + RP + +K F++LQS GC R+LDLY+G+G
Sbjct: 1 MRVIAGTARSLPLKAAEGDNTRPTTDRIKETLFNMLQSDIAGC-------RFLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++GIEA+SRG E VE + V+ NL +T
Sbjct: 54 AIGIEALSRGAKEAVLVE-NARAALAVIKDNLAFT 87
>gi|167758115|ref|ZP_02430242.1| hypothetical protein CLOSCI_00453 [Clostridium scindens ATCC 35704]
gi|336421613|ref|ZP_08601769.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664012|gb|EDS08142.1| RNA methyltransferase, RsmD family [Clostridium scindens ATCC
35704]
gi|336000084|gb|EGN30237.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
Length = 189
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GMD RP + +K F++L L +LDL++G+G
Sbjct: 1 MRVIAGSAKRIQLRTLDGMDTRPTTDRIKETLFNML------APYLYDCMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG E FVE +P ++ + NL T + T+ V T L + E
Sbjct: 55 IGIEALSRGSMETVFVEKNPKAMA-CIKENLTRTHLEHKAMTMTMDVMTALYKLE 108
>gi|158320475|ref|YP_001512982.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158140674|gb|ABW18986.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
Length = 186
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR + L +P+G++ RP + VK + F+I+QS + +DL+SG+G+
Sbjct: 1 MRVISGKARGQALKAPEGLNTRPTTDRVKESIFNIIQS------RIYDSVVVDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIE++SR S+ +F++ + ++++
Sbjct: 55 LGIESLSRNASKAYFIDHNKNSIASI 80
>gi|90422425|ref|YP_530795.1| hypothetical protein RPC_0906 [Rhodopseudomonas palustris BisB18]
gi|90104439|gb|ABD86476.1| conserved hypothetical protein 95 [Rhodopseudomonas palustris
BisB18]
Length = 188
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ + F+IL A G P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPTSRDIRPTQDRLRESLFNILMHAYGNP--MLDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAKFALFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|71082860|ref|YP_265579.1| N-6 adenine-specific DNA methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762717|ref|ZP_01264682.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
gi|71061973|gb|AAZ20976.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718519|gb|EAS85169.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 188
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L PK RP+ ++ K + F+IL+ + L LDL+SG GS
Sbjct: 1 MRIISGNFKGKKILLPKDKLTRPLKDLTKESIFNILKHSKLLNVELENSNILDLFSGVGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
G+E +SRG + F+E V+ N+L N++
Sbjct: 61 FGLECLSRGARNITFLESYTEVL-NILKKNID 91
>gi|449017917|dbj|BAM81319.1| similar to N6-adenine-specific methylase [Cyanidioschyzon merolae
strain 10D]
Length = 354
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG AR ++L SP + VRP M V+ A F IL+ P S +P R+LDL+ G G+
Sbjct: 141 LRITGGTARGRRLESPP-VYVRPAMAQVREACFSILRELQILP-SRQPVRFLDLFCGAGT 198
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G EA+SRG S FV+ P + V
Sbjct: 199 MGFEALSRGASSAVFVDRSPECCACV 224
>gi|317498519|ref|ZP_07956813.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894212|gb|EFV16400.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 185
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG E +FVE
Sbjct: 55 IGIEALSRGAKEAYFVE 71
>gi|167765563|ref|ZP_02437627.1| hypothetical protein CLOSS21_00057 [Clostridium sp. SS2/1]
gi|167712748|gb|EDS23327.1| RNA methyltransferase, RsmD family [Clostridium sp. SS2/1]
gi|291559029|emb|CBL37829.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SSC/2]
Length = 185
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGST----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG E +FVE
Sbjct: 55 IGIEALSRGAKEAYFVE 71
>gi|334340289|ref|YP_004545269.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
gi|334091643|gb|AEG59983.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
Length = 184
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L SPKGM RP + V+ A F+IL + +LDL+SGTG+
Sbjct: 1 MRIIGGLVRGRNLKSPKGMSTRPTSDRVREALFNILSP------RVSGSYFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNL 199
V IEA+SRG VE D ++SN+ + NL
Sbjct: 55 VAIEALSRGAERAVMVEKDRGTAGIILSNLKLCNL 89
>gi|429761489|ref|ZP_19293914.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
gi|429183742|gb|EKY24783.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
Length = 185
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG E +FVE
Sbjct: 55 IGIEALSRGAKEAYFVE 71
>gi|339627491|ref|YP_004719134.1| methyltransferase [Sulfobacillus acidophilus TPY]
gi|379008136|ref|YP_005257587.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
gi|339285280|gb|AEJ39391.1| putative methyltransferase [Sulfobacillus acidophilus TPY]
gi|361054398|gb|AEW05915.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
Length = 183
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A +L++P+GM RP E V+ A F+I Q + R+LDLY G+G+
Sbjct: 1 MRIVGGQASGHRLVAPRGMSTRPTGERVREALFNIWQR------RIESARFLDLYGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ +EA+SRG E VE D
Sbjct: 55 MALEAVSRGAREAVVVEPD 73
>gi|154504976|ref|ZP_02041714.1| hypothetical protein RUMGNA_02486 [Ruminococcus gnavus ATCC 29149]
gi|336432512|ref|ZP_08612347.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794859|gb|EDN77279.1| RNA methyltransferase, RsmD family [Ruminococcus gnavus ATCC 29149]
gi|336018849|gb|EGN48586.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
Length = 189
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GM+ RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGTAKRLQLKTLDGMETRPTTDRIKETLFNMI------APSVFGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG E FVE +P ++ V NL +T + + T V T L + E
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAMACVK-ENLNYTKLSEKAMTMTKDVLTALYQLE 108
>gi|414175450|ref|ZP_11429854.1| RsmD family RNA methyltransferase [Afipia broomeae ATCC 49717]
gi|410889279|gb|EKS37082.1| RsmD family RNA methyltransferase [Afipia broomeae ATCC 49717]
Length = 184
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNDIRPTQDRLRESLFNILMHAYENP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|302386344|ref|YP_003822166.1| methyltransferase [Clostridium saccharolyticum WM1]
gi|302196972|gb|ADL04543.1| methyltransferase [Clostridium saccharolyticum WM1]
Length = 183
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + +G + RP + +K F+++Q G P +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLVLKTIEGQETRPTTDRIKETLFNMIQ--GDLPGCC----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG VE +P + + NL+ T D + + V T L R E
Sbjct: 55 IGIEALSRGAGLAVLVEQNPK-AAECIRENLKTTKLEDDAIVMNCDVMTGLGRLE 108
>gi|189485569|ref|YP_001956510.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287528|dbj|BAG14049.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 200
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 9/104 (8%)
Query: 109 LQVLGGKARRK--KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
L+V+ G AR + K L + +RPM+ +K + FDI+Q P S+ ++DL++G
Sbjct: 3 LKVIAGSARGRIIKTLPHDNLSIRPMLGRIKKSIFDIIQFK--IPYSI----FIDLFAGA 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
GSVGIEA+SRG +V F E+ +S ++ N+ GF D + I
Sbjct: 57 GSVGIEALSRGAKKVVFAELSDISLS-LIKRNVNMLGFNDKAKI 99
>gi|325290428|ref|YP_004266609.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
gi|324965829|gb|ADY56608.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
Length = 186
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +KL + GM RP + VKGA F+IL + + + LDL++GTG+
Sbjct: 1 MRIIAGDFKGRKLKAVPGMTTRPTSDKVKGAVFNILGT------KVMEAKVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SRG +V VE DP + N++ N+
Sbjct: 55 LGLEALSRGAQKVVLVEKDP-MAWNIIKDNI 84
>gi|255534474|ref|YP_003094845.1| methyltransferase [Flavobacteriaceae bacterium 3519-10]
gi|255340670|gb|ACU06783.1| putative methyltransferase [Flavobacteriaceae bacterium 3519-10]
Length = 196
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ + K++ +PK DVRP + K A F I+++ S G LDL++G G
Sbjct: 1 MYRIISGRWKSKRISAPKNFDVRPTTDFAKEALFSIIENRFNIDVS--AGSVLDLFAGIG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
SV +E SRGC +V +EM+
Sbjct: 59 SVSLEFASRGCQDVTSIEMN 78
>gi|164688646|ref|ZP_02212674.1| hypothetical protein CLOBAR_02291 [Clostridium bartlettii DSM
16795]
gi|164603059|gb|EDQ96524.1| RNA methyltransferase, RsmD family [Clostridium bartlettii DSM
16795]
Length = 165
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+I+ + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNIIN------FYVMDNNILDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIE +SRG ++ FV+
Sbjct: 55 LGIECLSRGANKCVFVD 71
>gi|295104207|emb|CBL01751.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
SL3/3]
Length = 191
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+GIEA+SRG + F++ VS +++ N + G D S ++ FL EQF
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACREQF 112
>gi|88608384|ref|YP_506096.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
gi|88600553|gb|ABD46021.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
Length = 198
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
V IEA+SRG + V +++D + + NLE D
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHD 94
>gi|336434857|ref|ZP_08614577.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
gi|336003567|gb|EGN33650.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
Length = 189
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISPG------LFDSMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG E FVE + ++ V NL++T
Sbjct: 55 IGIEALSRGAKEAVFVEQNSKAMACVR-DNLKYT 87
>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
Length = 191
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 10/83 (12%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++V+GGK R +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRVVGGKYRGRRIKSMPKRADTKLLRPTTERVKESVFSILNNY------LEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMD 187
GTG+VGIEA+SRG S+V FVE D
Sbjct: 55 GTGAVGIEALSRGASKVVFVEND 77
>gi|422338361|ref|ZP_16419321.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355372277|gb|EHG19618.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 182
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEAIK-YIIENIDNLGFTD 91
>gi|167750940|ref|ZP_02423067.1| hypothetical protein EUBSIR_01925 [Eubacterium siraeum DSM 15702]
gi|167656119|gb|EDS00249.1| RNA methyltransferase, RsmD family [Eubacterium siraeum DSM 15702]
Length = 184
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + + V+
Sbjct: 55 LGIEAVSRGAKKAYLVD 71
>gi|363899470|ref|ZP_09325979.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|395208339|ref|ZP_10397580.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
gi|361958510|gb|EHL11809.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|394705920|gb|EJF13444.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
Length = 190
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+ILQ L LDL++G+G+
Sbjct: 1 MRVIAGTARRINLKTPDGLDTRPTQDRIKETLFNILQF------DLEGQDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEA+SRG F + V + NLE T F
Sbjct: 55 LGIEALSRGAKRAVFCDAARQAVL-CIEENLEKTHF 89
>gi|291557425|emb|CBL34542.1| RNA methyltransferase, RsmD family [Eubacterium siraeum V10Sc8a]
Length = 184
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + + V+
Sbjct: 55 LGIEAVSRGAKKAYLVD 71
>gi|169335591|ref|ZP_02862784.1| hypothetical protein ANASTE_02006 [Anaerofustis stercorihominis DSM
17244]
gi|169258329|gb|EDS72295.1| RNA methyltransferase, RsmD family [Anaerofustis stercorihominis
DSM 17244]
Length = 186
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L +PK VRP + +K F+I+ P SL +LDL++G+G+
Sbjct: 7 MRVIAGKMRGTNLENPKDRRVRPTTDRIKEDLFNIIMPY--IPDSL----FLDLFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEAISRGC + FV+ MD + ++ N++ T +D S++
Sbjct: 61 IGIEAISRGCKKSIFVDNNMDSF---RLIKKNIKKTKCIDQSTV 101
>gi|322419232|ref|YP_004198455.1| methyltransferase [Geobacter sp. M18]
gi|320125619|gb|ADW13179.1| methyltransferase [Geobacter sp. M18]
Length = 193
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++LL+PK VRP + VK A F IL S G + + R LD+++GTG+
Sbjct: 1 MRVIAGSARGRQLLAPKSHRVRPTADRVKEALFSILVSRLGDFSGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSI 210
+GIEA+SRG F+ D S LI NLE T D + +
Sbjct: 58 LGIEALSRGAEFALFI--DSHRESAELIRRNLEGTKLADQARV 98
>gi|295687637|ref|YP_003591330.1| methyltransferase [Caulobacter segnis ATCC 21756]
gi|295429540|gb|ADG08712.1| methyltransferase [Caulobacter segnis ATCC 21756]
Length = 187
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQYRGKAIVAPPGGSTRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG S FVE D + N++ V+ +H
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMTLFGVTRVH 101
>gi|227485070|ref|ZP_03915386.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236903|gb|EEI86918.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
Length = 181
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK + LLSPK RP VK A FD+L R LDL+SGTG
Sbjct: 1 MMKVVAGKYKGYNLLSPKSKTSRPTDNKVKEAIFDMLYPYKNS------FRALDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIE +SRG EV+F E + + ++L NL+
Sbjct: 55 QMGIEFLSRGADEVYFNEKN-YSNFSILNQNLD 86
>gi|197301676|ref|ZP_03166746.1| hypothetical protein RUMLAC_00402 [Ruminococcus lactaris ATCC
29176]
gi|197299116|gb|EDY33646.1| RNA methyltransferase, RsmD family [Ruminococcus lactaris ATCC
29176]
Length = 189
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +G+D RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARSLKLKTLEGIDTRPTTDRIKETLFNMI------APYLYDCEFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG E FVE +P + + NL++T
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAME-CIKENLKFT 87
>gi|146342899|ref|YP_001207947.1| methyltransferase [Bradyrhizobium sp. ORS 278]
gi|146195705|emb|CAL79732.1| Putative methyltransferase [Bradyrhizobium sp. ORS 278]
Length = 184
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|397690459|ref|YP_006527713.1| methyltransferase [Melioribacter roseus P3M]
gi|395811951|gb|AFN74700.1| putative methyltransferase [Melioribacter roseus P3M]
Length = 182
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + + PK VRP + VK + F+ L + + D+Y+G+GS
Sbjct: 1 MRIISGKFKGRTIKFPKSKLVRPTTDKVKESIFNYLNNI----IDFEDIKVCDIYAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG HFVE D + VS L N+E G D + I+
Sbjct: 57 LGLEALSRGAGLTHFVEKD-FFVSKTLRENIEALGVEDNTRIY 98
>gi|331091196|ref|ZP_08340037.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404643|gb|EGG84182.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
Length = 189
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+R +L + G++ RP + +K F+++ S C +LDL+SG+G
Sbjct: 1 MRVIGGSAKRLQLKTLDGLETRPTTDRIKETLFNMI-SPYLCDCM-----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG E FVE +P + + NL +T + V T L+R E
Sbjct: 55 IGIEALSRGAKEAVFVENNPKAMQYIK-ENLAFTKLDKKAVTMQTDVITALKRLE 108
>gi|225180918|ref|ZP_03734366.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
gi|225168399|gb|EEG77202.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
Length = 198
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + KGMD RP + VK + F+IL L LD+++G G
Sbjct: 1 MRVIAGCARGRTLKTRKGMDTRPTADRVKESLFNILTP------YLSGAEMLDVFAGNGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
VGIEA+SRG FVE + + ++ NL TG D I
Sbjct: 55 VGIEALSRGADRCVFVEKNAQ-CAKIIKDNLILTGLADRGEI 95
>gi|225552269|ref|ZP_03773209.1| putative methyltransferase [Borrelia sp. SV1]
gi|225371267|gb|EEH00697.1| putative methyltransferase [Borrelia sp. SV1]
Length = 178
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ IEA+SRG S H VE + + L+ N + + R E FL + + F
Sbjct: 55 MSIEALSRGASLTHLVECNRK-IKITLVKNFNFVE--EFYKFFFQRAEDFLSKKDLF 108
>gi|154251099|ref|YP_001411923.1| putative methyltransferase [Parvibaculum lavamentivorans DS-1]
gi|154155049|gb|ABS62266.1| putative methyltransferase [Parvibaculum lavamentivorans DS-1]
Length = 189
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + + +PKG VRP + + A F+IL A +L R LDL++GTG+
Sbjct: 1 MRIVGGVHRGRAIAAPKGDIVRPTSDRTREALFNILAHADFGEFTLEGARVLDLFAGTGA 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG S FV+ D + NLE G
Sbjct: 61 LGLEALSRGASFALFVD-DHAESRGAIRENLEHLGL 95
>gi|333371201|ref|ZP_08463163.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
gi|332976645|gb|EGK13486.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
Length = 199
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA+ ++L + GM VRP + V+ + F I+ G LDL++G+GS
Sbjct: 1 MRIIAGKAKGRRLKTVPGMKVRPTTDRVRESLFQIIGP------YFEGGSVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+E +SRG FV+ P V V NL+ GF D + ++
Sbjct: 55 LGLETLSRGAERAVFVDHSPASVETVR-KNLQVAGFADRAEVY 96
>gi|225027127|ref|ZP_03716319.1| hypothetical protein EUBHAL_01383 [Eubacterium hallii DSM 3353]
gi|224955591|gb|EEG36800.1| RNA methyltransferase, RsmD family [Eubacterium hallii DSM 3353]
Length = 184
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +GM RP + +K F++L + R+LDL+SG+G
Sbjct: 1 MRVIAGSARHLKLKTIEGMGTRPTTDRIKETLFNML------SFYVEESRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG S+ FVE +
Sbjct: 55 IGIEALSRGASQAVFVEQN 73
>gi|325263996|ref|ZP_08130729.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
gi|324031034|gb|EGB92316.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
Length = 189
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMI------APSVYGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG E FVE +P ++ V NL++T
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMACVK-ENLKYT 87
>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
Length = 188
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR ++L++PKG RP + K A F + G + R LDL++G+G
Sbjct: 1 MTRIIAGEARGRRLVAPKGETTRPTSDRAKEAIFSSWSTRFGLEGT----RVLDLFAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA--EQF 225
++G+EA SRG V VE DP ++ + N+ G DV ++ ++V ++L A E F
Sbjct: 57 ALGLEAASRGARSVVLVENDPNAIAAIE-KNIRTVGHPDV-AVSPMKVSSYLAGAPGEPF 114
Query: 226 CR 227
R
Sbjct: 115 DR 116
>gi|357632891|ref|ZP_09130769.1| methyltransferase [Desulfovibrio sp. FW1012B]
gi|357581445|gb|EHJ46778.1| methyltransferase [Desulfovibrio sp. FW1012B]
Length = 202
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 10/99 (10%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
GSVGIEA+SRG S+ FVE P V+ VL NL G
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGL 94
>gi|331004263|ref|ZP_08327741.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411428|gb|EGG90840.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
Length = 184
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + + +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------EIYDSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG E +F ++D + + NLE T + +++ E LE+
Sbjct: 55 IGIEALSRGAREAYFCDIDREAIQCIR-QNLEHTKLANKATVLKGSFEANLEK 106
>gi|84999340|ref|XP_954391.1| hypothetical protein [Theileria annulata]
gi|65305389|emb|CAI73714.1| hypothetical protein, conserved [Theileria annulata]
Length = 346
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 22/139 (15%)
Query: 68 LDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRL------------------- 108
+ +E + E PK+R+ K KL +S ++ +T ++L
Sbjct: 85 FNHEEVIEEKQPKSRKNKLNYTQKLNISRPINKNVKTRYKLQQFPKKQGVTKDGSYKFCS 144
Query: 109 -LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++ GG R +KL P + VRP+M VK + F+ L S + +DLY GTG
Sbjct: 145 NLRICGGAIRGRKLCIPP-IYVRPVMSRVKVSVFNYLNSLNMFSID-KETNVIDLYCGTG 202
Query: 168 SVGIEAISRGCSEVHFVEM 186
S+G+E++S G S+ FV++
Sbjct: 203 SLGLESLSYGSSKCTFVDI 221
>gi|312898936|ref|ZP_07758324.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
gi|310620098|gb|EFQ03670.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
Length = 191
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ G AR + L SP+GM RP ++ + + F+IL ++ S R LD+++GTG
Sbjct: 7 MVRIISGSARGRILKSPQGMATRPTLDRTRESLFNILATS-----SFYEKRVLDIFAGTG 61
Query: 168 SVGIEAISRGCSEVHFVEM 186
++G+EA+SRG SE F+++
Sbjct: 62 ALGLEAMSRGASEGVFIDV 80
>gi|29839903|ref|NP_829009.1| hypothetical protein CCA00135 [Chlamydophila caviae GPIC]
gi|29834250|gb|AAP04887.1| conserved hypothetical protein TIGR00095 [Chlamydophila caviae
GPIC]
Length = 189
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L VRP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKIFSNPSVRPTCGVVKEAVFNI------CAAYIEDATFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
VG EA+SRG S V FV+ V S +L P+L T
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLHPDLPVT 94
>gi|303229896|ref|ZP_07316672.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515452|gb|EFL57418.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
Length = 183
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IYGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGC 178
V IEA+SRG
Sbjct: 56 VAIEALSRGA 65
>gi|316932710|ref|YP_004107692.1| methyltransferase [Rhodopseudomonas palustris DX-1]
gi|315600424|gb|ADU42959.1| methyltransferase [Rhodopseudomonas palustris DX-1]
Length = 187
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSREIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRANVEALGLGGVSKVY 100
>gi|89898678|ref|YP_515788.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89332050|dbj|BAE81643.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 187
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + +RP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKTFSNSSIRPTCGVVKEAVFNI------CSAYVENALFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWT 202
+G EA+SRG S V FV+ V S ++ P+L T
Sbjct: 55 IGFEALSRGASSVTFVDSSAQAVRLIRANSQLINPDLPIT 94
>gi|374854269|dbj|BAL57156.1| methyltransferase small domain superfamily protein [uncultured
prokaryote]
Length = 195
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V G+A+ K+L P+G+ RP + V+ A F+ L + LDL++G G+
Sbjct: 1 MRVAAGEAKGKRLRVPRGVAARPTQDRVREAIFNALAD------RVVDADVLDLFAGVGT 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG FVE+DP + L NL GF + + L R EQ
Sbjct: 55 LGIEALSRGARRSVFVELDPRAAAG-LRANLHAAGFTGRAEVWRADALRALRRLEQ 109
>gi|70726830|ref|YP_253744.1| hypothetical protein SH1829 [Staphylococcus haemolyticus JCSC1435]
gi|68447554|dbj|BAE05138.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 183
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ LQ G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKVLESLEGRNTRPTMDKVKEGIFNSLQEVHGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL+ D S ++
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIQANLKQLDLRDQSEVY 94
>gi|429765793|ref|ZP_19298073.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
gi|429185646|gb|EKY26620.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
Length = 185
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL+ P M+ RP ++ VK A F +Q+ L +D+++GTGS
Sbjct: 1 MRIIAGRARGRKLIPPATMETRPTLDRVKEAMFSTIQN------YLLDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA SRG EV+ V+
Sbjct: 55 LGLEAASRGSKEVYLVD 71
>gi|428672075|gb|EKX72990.1| conserved hypothetical protein [Babesia equi]
Length = 396
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 78 SPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
S K + R + R +++ + T ++++ GG R +KL P + +RPMM VK
Sbjct: 131 SKKVKSRYKFRPTRMQGIKLHDESSFNTVSMMKINGGSIRGRKLCCPP-VYIRPMMSRVK 189
Query: 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197
GA F LQ G R +DL+ GTGSVG+EA+S G + FV++ I
Sbjct: 190 GALFSSLQHIGMFSPD-RECSVIDLFCGTGSVGLEALSYGATNCTFVDISMECCKATSI- 247
Query: 198 NLEWTGFLDVSSI 210
N GF D S +
Sbjct: 248 NAGHCGFKDKSRV 260
>gi|384109809|ref|ZP_10010671.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
gi|383868641|gb|EID84278.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
Length = 182
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGRIIKCPDGV-IRPAMDRMRESVFSILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAE 223
+ IEA+SRG S V E D V+ VL N+E T I H + VE F++R +
Sbjct: 53 IAIEAVSRGASHVELCEKDKIKVNTVL-ENVEVTEKECGVKIKCHFMPVEYFIKRCK 108
>gi|406978568|gb|EKE00508.1| hypothetical protein ACD_22C00002G0002 [uncultured bacterium]
Length = 193
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ G A+ KKL P+ +R + E+ K A F IL + LDLY+G+G+
Sbjct: 14 LRITSGSAKNKKLTVPEVPGIRAVQEITKLAIFSIL------GEKVLNAACLDLYAGSGN 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+G+EA+SRG + F++ + W + N+++ GF + + H F+ E
Sbjct: 68 MGLEALSRGANWCDFID-NNWNAKQAIEKNIKFCGFEEKAETHLSEAVKFVANTENKYDV 126
Query: 225 -FC 226
FC
Sbjct: 127 VFC 129
>gi|225568062|ref|ZP_03777087.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
gi|225163158|gb|EEG75777.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
Length = 189
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISP------YLYDCIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG E FVE +P ++ V
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACV 80
>gi|302383493|ref|YP_003819316.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
gi|302194121|gb|ADL01693.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
Length = 188
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + +++P+G RP + + A F++L+ A L+ R +DL++G+G+
Sbjct: 1 MRIVSGKLKGRAIVAPEGQGTRPTSDRARQAVFNVLEHAA-WAEPLQGMRVMDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EAISRG + FVE D + V+ N + G L + +H
Sbjct: 60 LGFEAISRGAAFCLFVETDE-LARGVIRENADAYGLLGTTRVH 101
>gi|451818121|ref|YP_007454322.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451784100|gb|AGF55068.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 185
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGF 204
+G+EA SRG SEV+ + P + NV NL + F
Sbjct: 55 LGLEAASRGASEVYLFDKSSTTFPLLKQNV--DNLRFQDF 92
>gi|367473023|ref|ZP_09472593.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
gi|365274707|emb|CCD85061.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
Length = 184
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRSIASPASRDIRPTQDRLREALFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|429759356|ref|ZP_19291855.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
gi|429179632|gb|EKY20871.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
Length = 183
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRILDLFSGTGA 55
Query: 169 VGIEAISRGC 178
V IEA+SRG
Sbjct: 56 VAIEALSRGA 65
>gi|56964143|ref|YP_175874.1| N-6 adenine-specific DNA methylase [Bacillus clausii KSM-K16]
gi|56910386|dbj|BAD64913.1| N6-adenine-specific DNA methylase [Bacillus clausii KSM-K16]
Length = 183
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR +L + G RP + VK A F+I+ G+ LDLY+G+G+
Sbjct: 1 MRVIAGEARGLQLKAVPGKTTRPTTDKVKEAMFNIIGP------YFDGGKALDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + ++ + NL TG+ D + ++
Sbjct: 55 LGIEALSRGMESCIFVDQNKQAIATIH-ANLSRTGYTDKAEVY 96
>gi|289765717|ref|ZP_06525095.1| methyltransferase [Fusobacterium sp. D11]
gi|289717272|gb|EFD81284.1| methyltransferase [Fusobacterium sp. D11]
Length = 182
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ ++ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIKGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|148253232|ref|YP_001237817.1| methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146405405|gb|ABQ33911.1| Putative methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 184
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|365882267|ref|ZP_09421522.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
gi|365289430|emb|CCD94053.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
Length = 184
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|365888468|ref|ZP_09427231.1| putative methyltransferase [Bradyrhizobium sp. STM 3809]
gi|365335851|emb|CCD99762.1| putative methyltransferase [Bradyrhizobium sp. STM 3809]
Length = 184
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDPVD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|386392447|ref|ZP_10077228.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
gi|385733325|gb|EIG53523.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
Length = 202
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 10/99 (10%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
GSVGIEA+SRG S+ FVE P V+ VL NL G
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGL 94
>gi|73748121|ref|YP_307360.1| methyltransferase [Dehalococcoides sp. CBDB1]
gi|289432198|ref|YP_003462071.1| methyltransferase [Dehalococcoides sp. GT]
gi|452203032|ref|YP_007483165.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452204451|ref|YP_007484580.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
gi|73659837|emb|CAI82444.1| putative methyltransferase [Dehalococcoides sp. CBDB1]
gi|288945918|gb|ADC73615.1| methyltransferase [Dehalococcoides sp. GT]
gi|452110091|gb|AGG05823.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452111507|gb|AGG07238.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
Length = 192
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV 101
>gi|283768845|ref|ZP_06341756.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
gi|283104631|gb|EFC06004.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
Length = 183
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + + +P+G D RP ++ V+ + F IL + + +LDLY+G+G+
Sbjct: 1 MRIIAGKFRSRVIEAPRGTDTRPTLDQVRESVFSILMN------DIVDASFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
G+EA+SRG FV+ D V+ N+E +D +++ V + L+
Sbjct: 55 NGLEALSRGAKRAVFVDKDRQ-AQRVIQKNIESLDVMDQATLLRVSAKQALD 105
>gi|303232059|ref|ZP_07318762.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|401680132|ref|ZP_10812056.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
gi|302513165|gb|EFL55204.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|400219259|gb|EJO50130.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
Length = 183
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGC 178
V IEA+SRG
Sbjct: 56 VAIEALSRGA 65
>gi|226228554|ref|YP_002762660.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
gi|226091745|dbj|BAH40190.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
Length = 192
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SPK VRP E V+ +++ A L R +DL++GTG+
Sbjct: 1 MRIVGGKYAGRNLTSPKDFRVRPTAEAVRVEMMKLVR------ADLEGARVIDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG V FVE P
Sbjct: 55 IGLEALSRGAKYVDFVEFRP 74
>gi|254302821|ref|ZP_04970179.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323013|gb|EDK88263.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 182
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEDSIFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|315917592|ref|ZP_07913832.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059117|ref|ZP_07923602.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684793|gb|EFS21628.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313691467|gb|EFS28302.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
Length = 182
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F ++ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSMI------APHLEDSVFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N+ GF D
Sbjct: 55 IALEALSRGAKRAVMIEKDTEAL-RFIIENVNALGFQD 91
>gi|422317032|ref|ZP_16398401.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
gi|404590303|gb|EKA92750.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
Length = 182
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N++ GF D
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTD 91
>gi|216264056|ref|ZP_03436050.1| putative methyltransferase [Borrelia afzelii ACA-1]
gi|215980100|gb|EEC20922.1| putative methyltransferase [Borrelia afzelii ACA-1]
Length = 189
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIISSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ IEA+SRG S H VE + S L+ N + + R E FL + + F
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSFVE--EFYKFFFQRAEDFLSKKDLF 119
>gi|147668815|ref|YP_001213633.1| putative methyltransferase [Dehalococcoides sp. BAV1]
gi|146269763|gb|ABQ16755.1| putative methyltransferase [Dehalococcoides sp. BAV1]
Length = 192
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASHAHVYCLDV 101
>gi|392394769|ref|YP_006431371.1| RsmD family RNA methyltransferase [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525847|gb|AFM01578.1| RNA methyltransferase, RsmD family [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 180
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + GM+ RP + +KGA F++L+ + R LDL+SGTG+
Sbjct: 1 MRIIAGYYRGQRLKTVPGMNTRPTADKIKGAIFNVLRE------KIAGARVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ +EA+SRG E +E +++ N+E G ++ + + T+ T+LE+
Sbjct: 55 LALEALSRGAKEAVLIE-KSHTAQHIIRENIEHMG-VENARLVTMDAFTYLEQ 105
>gi|352106708|ref|ZP_08961651.1| methyltransferase [Halomonas sp. HAL1]
gi|350597751|gb|EHA13879.1| methyltransferase [Halomonas sp. HAL1]
Length = 204
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 27 LRIIGGEFRRRQLPILDSPGLRPTPDRVRETLFNWLGQ------QLYGQQVLDLFAGTGA 80
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG + V FVE DP V + L NL + + S++H V+ +L R Q
Sbjct: 81 LGIEAVSRGAACVDFVERDPRVAAQ-LSTNLA-SLHITSSTVHINDVQAYLTRPAQ 134
>gi|220929300|ref|YP_002506209.1| methyltransferase [Clostridium cellulolyticum H10]
gi|219999628|gb|ACL76229.1| methyltransferase [Clostridium cellulolyticum H10]
Length = 187
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
+L+V+ G + KL + +GM+ RP + VK F+I+ A PG LDL++G
Sbjct: 3 NILRVISGSVKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYIPGSNVLDLFAG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+GIEA+SRG + F + + + +++ NL+ T + S + + L++ Q
Sbjct: 56 TGSLGIEALSRGANSAVFCDQNKQSI-DIIKKNLQHTKLTEKSEVFLGEAQLMLKKLSQL 114
Query: 226 CR 227
+
Sbjct: 115 SK 116
>gi|381180841|ref|ZP_09889678.1| methyltransferase [Treponema saccharophilum DSM 2985]
gi|380767197|gb|EIC01199.1| methyltransferase [Treponema saccharophilum DSM 2985]
Length = 192
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGHVVKCPDGI-IRPAMDRMRESVFAILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERA 222
+ IEA+SRG + V E D V VL N+ T + I H + VE FL+R
Sbjct: 53 IAIEAVSRGAARVQLCEKDKIKVKQVL-ENVAVTERICNVKIGCHFLAVELFLKRC 107
>gi|182417257|ref|ZP_02948610.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237668100|ref|ZP_04528084.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378903|gb|EDT76416.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237656448|gb|EEP54004.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 185
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q + G +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIPEGTIVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA SRG SEV+ +
Sbjct: 55 LGLEAASRGASEVYLFD 71
>gi|291531108|emb|CBK96693.1| RNA methyltransferase, RsmD family [Eubacterium siraeum 70/3]
Length = 184
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL +P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLTAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + + V+
Sbjct: 55 LGIEAVSRGAKKAYLVD 71
>gi|340754747|ref|ZP_08691483.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|421500014|ref|ZP_15947037.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313685756|gb|EFS22591.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|402269115|gb|EJU18461.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 182
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N+ G+ D
Sbjct: 55 IALEALSRGAKRAVMIEKDAEAL-RFIIENVNTLGYQD 91
>gi|389580616|ref|ZP_10170643.1| LOW QUALITY PROTEIN: RNA methyltransferase, RsmD family
[Desulfobacter postgatei 2ac9]
gi|389402251|gb|EIM64473.1| LOW QUALITY PROTEIN: RNA methyltransferase, RsmD family
[Desulfobacter postgatei 2ac9]
Length = 188
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL+S G D+RP + V+ A F+IL +R R LD+++GTG+
Sbjct: 1 MRIISGACRGRKLVSDPGKDIRPTSDRVREAVFNILGPG------IRGKRVLDMFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG FV+ NV+ N+E D + I
Sbjct: 55 LGLEALSRGAQSAVFVDA-ARSSCNVIKRNIELCRMADQARI 95
>gi|323135794|ref|ZP_08070877.1| methyltransferase [Methylocystis sp. ATCC 49242]
gi|322398885|gb|EFY01404.1| methyltransferase [Methylocystis sp. ATCC 49242]
Length = 185
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L +P+ +RP + ++ + FDIL A G P + +DLY+GTG+
Sbjct: 1 MRIVGGALRGRALSAPRSQAIRPTSDRLRESVFDILAHAFGDPVA--GAAVIDLYAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + FV+ D +L N+E G V+ +
Sbjct: 59 LGLEALSRGAARALFVD-DGAEARALLRANIEALGLGGVTRV 99
>gi|300854457|ref|YP_003779441.1| hypothetical protein CLJU_c12710 [Clostridium ljungdahlii DSM
13528]
gi|300434572|gb|ADK14339.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 186
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G AR +KL+SP G ++ RP ++ VK A F+I+Q+ + + LD+++GTG
Sbjct: 1 MRIIAGLARGRKLMSPNGYNITRPTLDRVKEAMFNIIQN------RVYGSKVLDVFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207
S+G+EA SRG + + V+ L N+E GF ++
Sbjct: 55 SLGLEAASRGAEKCYLVDRSSDTFY-FLDKNVENLGFSNI 93
>gi|111115030|ref|YP_709648.1| hypothetical protein BAPKO_0213 [Borrelia afzelii PKo]
gi|410678963|ref|YP_006931365.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
gi|110890304|gb|ABH01472.1| conserved hypothetical protein [Borrelia afzelii PKo]
gi|408536351|gb|AFU74482.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
Length = 189
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ IEA+SRG S H VE + S L+ N + + R E FL + + F
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSFVE--EFYKFFFQRAEDFLSKKDLF 119
>gi|216264731|ref|ZP_03436723.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218249780|ref|YP_002374732.1| methyltransferase [Borrelia burgdorferi ZS7]
gi|221217524|ref|ZP_03588994.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223889261|ref|ZP_03623849.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224534074|ref|ZP_03674657.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225549786|ref|ZP_03770750.1| putative methyltransferase [Borrelia burgdorferi 118a]
gi|215981204|gb|EEC22011.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218164968|gb|ACK75029.1| putative methyltransferase [Borrelia burgdorferi ZS7]
gi|221192587|gb|EEE18804.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223885294|gb|EEF56396.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224512773|gb|EEF83141.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225369594|gb|EEG99043.1| putative methyltransferase [Borrelia burgdorferi 118a]
Length = 189
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + + L+ N + + R E FL + + F
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSFVE--EFYKFFFQRAEDFLSKKDLF 119
>gi|419840643|ref|ZP_14364031.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386907586|gb|EIJ72293.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 182
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N+ G+ D
Sbjct: 55 IALEALSRGAKRAVMIEKDAEAL-RFIIENVNTLGYQD 91
>gi|254796588|ref|YP_003081424.1| methyltransferase [Neorickettsia risticii str. Illinois]
gi|254589816|gb|ACT69178.1| putative methyltransferase [Neorickettsia risticii str. Illinois]
Length = 198
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEEIHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
V IEA+SRG + V +++D + + NLE D
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHD 94
>gi|225389050|ref|ZP_03758774.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
gi|225044872|gb|EEG55118.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
Length = 188
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ S+ +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGLDTRPTTDRIKETLFNMLQP------SIPDCIFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG S VE +P V +
Sbjct: 55 IGIEALSRGASLAVLVENNPKAVDCI 80
>gi|270307618|ref|YP_003329676.1| methyltransferase [Dehalococcoides sp. VS]
gi|270153510|gb|ACZ61348.1| methyltransferase [Dehalococcoides sp. VS]
Length = 192
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV 101
>gi|358466377|ref|ZP_09176207.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069127|gb|EHI79075.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 182
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSIV------APYIENSLFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + + I N++ GF D
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALKYI-IENIDSLGFTD 91
>gi|410658796|ref|YP_006911167.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|410661785|ref|YP_006914156.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
gi|409021151|gb|AFV03182.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|409024141|gb|AFV06171.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
Length = 187
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L + KGMD RP + VKGA F+IL + R LDL++GTG+
Sbjct: 1 MRIISGQWKGRNLKTVKGMDTRPTSDKVKGAIFNIL------AGKVMNARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+ EA+SRG VE D + + N E G +SI + F ++A Q
Sbjct: 55 LSFEALSRGARHAVLVEKDTSALETIR-KNAEILGAAPRTSILRMDAMNFFKQAVQ 109
>gi|224368228|ref|YP_002602391.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
gi|223690944|gb|ACN14227.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
Length = 189
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KKL++P+G++ RP ++ ++ + F+I+ + R LDL++GTG+
Sbjct: 1 MRIISGKYRGKKLITPRGLETRPTLDRIRESIFNIISQ------RIANARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SR FV+
Sbjct: 55 LGLEALSRNAGFATFVD 71
>gi|332296365|ref|YP_004438288.1| hypothetical protein Thena_1545 [Thermodesulfobium narugense DSM
14796]
gi|332179468|gb|AEE15157.1| Protein of unknown function methylase putative [Thermodesulfobium
narugense DSM 14796]
Length = 187
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GG+ + + L+SPK +VRP+ V+ + DI+ S + LDL++G GSV
Sbjct: 5 IVGGEFKNRSLVSPKTNEVRPLSSRVRKSLMDIVGS------RVIECTLLDLFAGIGSVS 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
IE +SRG V VE +P + S L NLE L+ +I VE FL
Sbjct: 59 IEFLSRGAKSVISVEKNPKIAS-FLKKNLENFNLLNRCTILNYSVEKFL 106
>gi|373111993|ref|ZP_09526228.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|371656561|gb|EHO21886.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
Length = 175
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N+ G+ D
Sbjct: 55 IALEALSRGAKRAVMIEKDAEAL-RFIIENVNTLGYQD 91
>gi|308273139|emb|CBX29742.1| hypothetical protein N47_F14370 [uncultured Desulfobacterium sp.]
Length = 187
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
L+V+ G + +KL S G+ +RP ++ + F+IL Q G LDL++GT
Sbjct: 4 LRVISGDLKGRKLFSINGLKIRPTSGRLRESIFNILSDQVVGSV--------VLDLFAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
G++GIEA+SRG S F++ D +S + I N+ G + S+I
Sbjct: 56 GAMGIEALSRGASFAAFIDKDKEAISTI-IKNINICGLAERSTI 98
>gi|114800273|ref|YP_761457.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114740447|gb|ABI78572.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
Length = 186
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L +PKGM RP + + + F+IL A P L R +DL++G+G+
Sbjct: 1 MRIIAGQHKGRSLTAPKGMTTRPTSDRTRESLFNILAHAPWAP-PLEGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG + FVE D + N+E G + +H
Sbjct: 60 LGLEAMSRGAAFCLFVETDH-GARGAIRDNIEALGLFGHTRLH 101
>gi|330813626|ref|YP_004357865.1| ribosomal RNA small subunit methyltransferase D [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486721|gb|AEA81126.1| ribosomal RNA small subunit methyltransferase D [Candidatus
Pelagibacter sp. IMCC9063]
Length = 187
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK +++KL+ P RP+ + VK + F++L + LD++SG+GS
Sbjct: 1 MRIISGKFKKQKLILPDPKITRPLRDYVKESLFNLLVHSPLLQFQFGKSSILDIFSGSGS 60
Query: 169 VGIEAISRGCSEVHFVEMD 187
GIE +SRG S V F+E D
Sbjct: 61 FGIECLSRGASHVTFIEND 79
>gi|82753598|ref|XP_727743.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483734|gb|EAA19308.1| similar to unknown proteins [Plasmodium yoelii yoelii]
Length = 455
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 65 RYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSP 124
+YG+ ++ P ++ + + K+ +E + ++L + G + KKL SP
Sbjct: 192 KYGIPEEKLNIRRLPNSKIKSKYNFCKIKTYNETTNINYKKKKILTINEGILKNKKLYSP 251
Query: 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184
+ RPMM VK + F+IL G ++ LD +SG+G++GIE ISRG V FV
Sbjct: 252 -DIYTRPMMSKVKESLFNILVHLG--VFNINNFNVLDAFSGSGNLGIECISRGLENVTFV 308
Query: 185 EM 186
++
Sbjct: 309 DL 310
>gi|456357797|dbj|BAM92242.1| methyltransferase [Agromonas oligotrophica S58]
Length = 184
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDEP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|71032457|ref|XP_765870.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352827|gb|EAN33587.1| hypothetical protein TP01_0343 [Theileria parva]
Length = 335
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 31/162 (19%)
Query: 48 YKSGTGLT----SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEER 103
Y+S + L ++D E D DE + E PK + K KL +S ++ +
Sbjct: 27 YRSNSRLNVFIDADDNDEFF-----DHDEVIEEKPPKFMKNKLNHAQKLHISRPINKSVK 81
Query: 104 TTHRL--------------------LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDI 143
T ++L L++ GG R +KL P + VRP M VK + F+
Sbjct: 82 TRYKLQQFPKKQGVTKDGAYKFCSNLRICGGSIRGRKLCIP-PIYVRPAMAKVKISVFNY 140
Query: 144 LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185
L S + +DLY GTGS+G+E++S G S+ FV+
Sbjct: 141 LNSLSMFSID-KETNVIDLYCGTGSLGLESLSYGASKCTFVD 181
>gi|260904760|ref|ZP_05913082.1| putative methyltransferase [Brevibacterium linens BL2]
Length = 248
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KL++P G + RP + VK + F +L G L+ LDL++G+G
Sbjct: 1 MRIIAGAYKGSKLVAPGGSNTRPTSDRVKESLFSMLDGYG----VLQAANVLDLFAGSGG 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+G EA+SRG +EV FV+ + + N G + IH+ V +FL
Sbjct: 57 LGFEAMSRGAAEVDFVD-SAGASARAVEANAAKLGIDHSTRIHSSDVVSFL 106
>gi|295396027|ref|ZP_06806211.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971115|gb|EFG47006.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 181
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L +P+G D RP + V+ + F L G +L LDL++G+G+
Sbjct: 1 MRVIAGKYKSHALTAPQGADTRPTSDRVRESLFATLDMLGMIDGAL----VLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG S+V FVE
Sbjct: 57 LGIEALSRGASDVVFVE 73
>gi|402831880|ref|ZP_10880551.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
gi|402280468|gb|EJU29176.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
Length = 179
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R K+L++PK + VRP M+ K + F+IL + L + LDL++GTG+
Sbjct: 1 MRIISGTHRGKQLIAPKNLPVRPTMDFAKESLFNILNNY----FFLDSIKVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+ E SRGC E+ V+ P V +
Sbjct: 57 ISYEFGSRGCPEITAVDSHPACVQYI 82
>gi|338971991|ref|ZP_08627370.1| Methyltransferase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234885|gb|EGP09996.1| Methyltransferase [Bradyrhizobiaceae bacterium SG-6C]
Length = 184
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNEIRPTQDRLRESLFNILMHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|224534386|ref|ZP_03674964.1| putative methyltransferase [Borrelia spielmanii A14S]
gi|224514488|gb|EEF84804.1| putative methyltransferase [Borrelia spielmanii A14S]
Length = 189
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + KK+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGKKILFPKTGVIRPVMSIVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + S L+ N + + R E FL + + F
Sbjct: 65 IMSVEALSRGASLAHLVECNRKTKST-LVKNFSFVE--EFYKFFFQRAEDFLVKKDLF 119
>gi|340752558|ref|ZP_08689357.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
gi|229422356|gb|EEO37403.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
Length = 182
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N++ GF D
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTD 91
>gi|421526791|ref|ZP_15973397.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
gi|402256899|gb|EJU07375.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
Length = 182
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|282848932|ref|ZP_06258322.1| RNA methyltransferase, RsmD family [Veillonella parvula ATCC 17745]
gi|294791779|ref|ZP_06756927.1| RNA methyltransferase, RsmD family [Veillonella sp. 6_1_27]
gi|282581437|gb|EFB86830.1| RNA methyltransferase, RsmD family [Veillonella parvula ATCC 17745]
gi|294457009|gb|EFG25371.1| RNA methyltransferase, RsmD family [Veillonella sp. 6_1_27]
Length = 183
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANKGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|414168722|ref|ZP_11424685.1| RsmD family RNA methyltransferase [Afipia clevelandensis ATCC
49720]
gi|410887458|gb|EKS35268.1| RsmD family RNA methyltransferase [Afipia clevelandensis ATCC
49720]
Length = 184
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNEIRPTQDRLRESLFNILMHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|397616529|gb|EJK64018.1| hypothetical protein THAOC_15292 [Thalassiosira oceanica]
Length = 317
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGA------AFDILQSAGGCPASLRPGRWLDL 162
L+VLGG R +KL SP + +RPMM VK A +F GG P + R LD+
Sbjct: 83 LRVLGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGFYDGVGGQPCTTR---HLDI 138
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+SG+GSVG+E++SRG FV+M N+E GF
Sbjct: 139 FSGSGSVGLESLSRGAKHCTFVDMSSDCCG-ACERNIERCGF 179
>gi|294782567|ref|ZP_06747893.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
gi|294481208|gb|EFG28983.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
Length = 182
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N++ GF D
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTD 91
>gi|262068284|ref|ZP_06027896.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
gi|291378022|gb|EFE85540.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
Length = 182
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + +I N++ GF D
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTD 91
>gi|153814837|ref|ZP_01967505.1| hypothetical protein RUMTOR_01052 [Ruminococcus torques ATCC 27756]
gi|317500353|ref|ZP_07958578.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089638|ref|ZP_08338537.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438959|ref|ZP_08618579.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847868|gb|EDK24786.1| RNA methyltransferase, RsmD family [Ruminococcus torques ATCC
27756]
gi|316898294|gb|EFV20340.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405006|gb|EGG84544.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017214|gb|EGN46980.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
Length = 189
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + GMD RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSARSLRLKTLDGMDTRPTTDRIKETLFNMI------GPSMFDCVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG E FVE +P + V NL++T
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMMCVK-DNLKFT 87
>gi|296327942|ref|ZP_06870477.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154898|gb|EFG95680.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 182
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYIEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|325972733|ref|YP_004248924.1| methyltransferase [Sphaerochaeta globus str. Buddy]
gi|324027971|gb|ADY14730.1| methyltransferase [Sphaerochaeta globus str. Buddy]
Length = 186
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R + + P G+ +RP M++++ + F IL +L WLDL++G+G
Sbjct: 1 MRITGGIYRGRTVACPPGI-IRPAMDMMRESLFSIL-------GNLEGKSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
VGIEA SRG S VH VE D
Sbjct: 53 VGIEAASRGASLVHLVEKD 71
>gi|34763572|ref|ZP_00144507.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237742322|ref|ZP_04572803.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256845601|ref|ZP_05551059.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294785110|ref|ZP_06750398.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|421145506|ref|ZP_15605372.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|27886761|gb|EAA23899.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429970|gb|EEO40182.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256719160|gb|EEU32715.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294486824|gb|EFG34186.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|395488092|gb|EJG08981.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 182
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|27382605|ref|NP_774134.1| hypothetical protein bll7494 [Bradyrhizobium japonicum USDA 110]
gi|27355777|dbj|BAC52759.1| bll7494 [Bradyrhizobium japonicum USDA 110]
Length = 185
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IEDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVESLGLGGVTKVY 100
>gi|342732299|ref|YP_004771138.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455702|ref|YP_005668297.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959284|ref|ZP_12602123.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|417961160|ref|ZP_12603630.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|417965785|ref|ZP_12607266.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|417966664|ref|ZP_12607974.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|417967951|ref|ZP_12609007.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|418016299|ref|ZP_12655864.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372554|ref|ZP_12964646.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329754|dbj|BAK56396.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506634|gb|EGX28928.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984045|dbj|BAK79721.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380333731|gb|EIA24259.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|380334200|gb|EIA24651.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|380335824|gb|EIA25930.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|380340366|gb|EIA28971.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|380340533|gb|EIA29114.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|380342223|gb|EIA30668.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 189
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K++SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGRKIISPDGYDVTRPTLDRVKQSIFNIIQND-----LTRDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
S+G+E+ SRG + + + + S L N+ G D +
Sbjct: 56 SLGLESASRGAKKTYLCDRNDITFS-YLKQNIRNLGLSDCA 95
>gi|335046120|ref|ZP_08539143.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333759906|gb|EGL37463.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 182
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPEGLDTRPTQDRIKETLFNIIQ------FDLTNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + F +
Sbjct: 55 LGIEALSRGAARAVFCD 71
>gi|268315830|ref|YP_003289549.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345302121|ref|YP_004824023.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
gi|262333364|gb|ACY47161.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345111354|gb|AEN72186.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
Length = 182
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ RRK L +PKG RP + + + F +++S L LDL++GTG+
Sbjct: 1 MRIIAGRFRRKTLRAPKGHLTRPTTDRTRESLFHLVESR----MDLEGADVLDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EAISRG V FVE+ V++ V
Sbjct: 57 LGLEAISRGAVAVTFVELQGPVLACV 82
>gi|19704664|ref|NP_604226.1| methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714972|gb|AAL95525.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 182
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYIEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|422933306|ref|ZP_16966228.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339891252|gb|EGQ80259.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 125
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + + I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALKYI-IENIDNLGFSD 91
>gi|237744130|ref|ZP_04574611.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260494285|ref|ZP_05814416.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
gi|229431359|gb|EEO41571.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260198431|gb|EEW95947.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
Length = 182
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|404493263|ref|YP_006717369.1| DNA methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77545321|gb|ABA88883.1| DNA methyltransferase, putative [Pelobacter carbinolicus DSM 2380]
Length = 194
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL KG ++RP + V+ A F LQS G + L + LDL++GTG+
Sbjct: 1 MRIISGSAKGRKLRQFKGQNIRPTTDRVREALFSSLQSRLGSFSEL---KVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+ +EA+SRG + V+ P V+ V+ N++ G D + + F+ + +
Sbjct: 58 LSLEALSRGAAYAVLVDQSPNSVA-VIAENIKTCGMQDRTRLCRTSASIFVNQNQ 111
>gi|57235055|ref|YP_180937.1| methyltransferase [Dehalococcoides ethenogenes 195]
gi|57225503|gb|AAW40560.1| methyltransferase, putative [Dehalococcoides ethenogenes 195]
Length = 192
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RACCDIIKQNLETIGCAGQAHVYCLDV 101
>gi|320354627|ref|YP_004195966.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
gi|320123129|gb|ADW18675.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
Length = 195
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG AR +KLL+P+ +RP + V+ A F+IL S ++ R LDL++GTG+
Sbjct: 1 MRITGGSARGRKLLTPRSDRIRPTCDRVREALFNILGS------RIKGARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG FV+
Sbjct: 55 IGTEALSRGAVFALFVD 71
>gi|336418713|ref|ZP_08598985.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|423137071|ref|ZP_17124714.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
gi|336164390|gb|EGN67297.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|371961138|gb|EHO78781.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 182
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|83589787|ref|YP_429796.1| methyltransferase small [Moorella thermoacetica ATCC 39073]
gi|83572701|gb|ABC19253.1| Methyltransferase small [Moorella thermoacetica ATCC 39073]
Length = 192
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ G+AR ++L +P+G RP + V+ A F+IL + + +LDL++G+G
Sbjct: 1 MLRIIAGEARGRRLGTPRGRTTRPTSDRVREALFNILGN------RVIDSLFLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+VG+EA+SRG V FVE + + L N++ TG
Sbjct: 55 AVGLEALSRGARRVVFVENNRQAL-KCLTANIKATGL 90
>gi|399890210|ref|ZP_10776087.1| methyltransferase [Clostridium arbusti SL206]
Length = 185
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+G+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGIGTRPTLDRIKESMFSIIQN------EVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA SRG + + V+ P + +L N+E F
Sbjct: 55 LGLEAASRGAKQCYLVDKGP-ITFPILEKNVENLKF 89
>gi|402846680|ref|ZP_10894989.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402267372|gb|EJU16767.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 192
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R++ PK + RP + K F++LQ + LDL+SGTGS
Sbjct: 1 MRIIGGKYKRRRFDVPKSFNARPTTDFAKENLFNVLQYY----INFEDATALDLFSGTGS 56
Query: 169 VGIEAISRGCSEV 181
+ E ISRGCS V
Sbjct: 57 ISAELISRGCSRV 69
>gi|220931856|ref|YP_002508764.1| putative methyltransferase [Halothermothrix orenii H 168]
gi|219993166|gb|ACL69769.1| putative methyltransferase [Halothermothrix orenii H 168]
Length = 178
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR ++L S +G RP + VK A F+IL S+ LDL++G GS
Sbjct: 1 MRIISGIARGRRLKSIRGSGTRPTTDRVKEALFNILGQ------SVIETDVLDLFAGFGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+G+EA+SRG + FVE + V NV+ N++ GF +++ + V T+L
Sbjct: 55 LGLEALSRGANSAVFVEKNYRNV-NVINDNIKLCGFEELADVVKKDVFTYL 104
>gi|78044003|ref|YP_360292.1| methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL++PKG+ RP + VK A F+IL + LD ++GTG+
Sbjct: 1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNILGY------RVIDAVVLDGFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+G+EA+SRG +F+E D S L N+E G+ D
Sbjct: 55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGD 91
>gi|416998985|ref|ZP_11939654.1| RNA methyltransferase, RsmD family [Veillonella parvula
ACS-068-V-Sch12]
gi|333977138|gb|EGL77997.1| RNA methyltransferase, RsmD family [Veillonella parvula
ACS-068-V-Sch12]
Length = 183
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|294793640|ref|ZP_06758777.1| RNA methyltransferase, RsmD family [Veillonella sp. 3_1_44]
gi|294455210|gb|EFG23582.1| RNA methyltransferase, RsmD family [Veillonella sp. 3_1_44]
Length = 183
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|359411392|ref|ZP_09203857.1| methyltransferase [Clostridium sp. DL-VIII]
gi|357170276|gb|EHI98450.1| methyltransferase [Clostridium sp. DL-VIII]
Length = 183
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSTIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGF 204
+G+EA SRG EV+ + P + NV NL++ F
Sbjct: 55 LGLEAASRGADEVYLFDKSSDTFPLLKQNV--ENLKFQDF 92
>gi|289578491|ref|YP_003477118.1| methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528204|gb|ADD02556.1| methyltransferase [Thermoanaerobacter italicus Ab9]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGNEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|310828884|ref|YP_003961241.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740618|gb|ADO38278.1| hypothetical protein ELI_3316 [Eubacterium limosum KIST612]
Length = 189
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 8/97 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G+ R KL+S G +RP + VKGA F+ +Q LR + ++DL+ G+G
Sbjct: 1 MRVIAGEKRGTKLVSIDGDFIRPTTDKVKGAVFNSVQ------VELREAQVFVDLFGGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
++GIEA+SRG + +F ++ + ++ NL+ TGF
Sbjct: 55 AMGIEALSRGIPQAYFFDISRNSIG-IIKKNLKLTGF 90
>gi|163758413|ref|ZP_02165501.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
gi|162284702|gb|EDQ34985.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
Length = 187
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + + +PK +RP + + + F+IL P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSIAAPKTSSIRPTTDRTRESLFNILSHT--YPEALDGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRGC FVE
Sbjct: 59 LGLEALSRGCRTALFVE 75
>gi|336401304|ref|ZP_08582075.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
gi|336161214|gb|EGN64221.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
Length = 182
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSD 91
>gi|374578024|ref|ZP_09651120.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM471]
gi|374426345|gb|EHR05878.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM471]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IADARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NCAEARALLRNNVETLGLGGVTKVY 100
>gi|170761383|ref|YP_001787809.1| methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169408372|gb|ACA56783.1| RNA methyltransferase, RsmD family [Clostridium botulinum A3 str.
Loch Maree]
Length = 185
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+G+EA SRG + V+ P +L N++ F D+ + T LE
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYTALE 105
>gi|16124482|ref|NP_419046.1| hypothetical protein CC_0227 [Caulobacter crescentus CB15]
gi|221233166|ref|YP_002515602.1| methyltransferase [Caulobacter crescentus NA1000]
gi|13421356|gb|AAK22214.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962338|gb|ACL93694.1| methyltransferase [Caulobacter crescentus NA1000]
Length = 188
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQFRGKAIAAPPGDATRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG S FVE D + N++ V+ +H
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMHLFGVTRVH 101
>gi|407779728|ref|ZP_11126981.1| methyltransferase [Nitratireductor pacificus pht-3B]
gi|407298498|gb|EKF17637.1| methyltransferase [Nitratireductor pacificus pht-3B]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG R + L +P+ D+RP + + A F+IL+ L R LDL++GTG+
Sbjct: 1 MRVVGGAFRGRALAAPRTDDIRPTTDRTREALFNILEHR--FAERLAGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG S FVE
Sbjct: 59 LGIEALSRGASFALFVE 75
>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
Length = 189
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA +KL + P+G RP E+V+ A F L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGKAGGRKLRVPPRG--TRPTTELVREALFSSLEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G++G+EA+SRG E FVE D V VL N+ G V + +VET +
Sbjct: 55 GALGLEALSRGAREAMFVEADRTAV-EVLRGNIARVGLGGV--VRQGKVETVV 104
>gi|379795494|ref|YP_005325492.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872484|emb|CCE58823.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 180
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKSLESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V ++ NLE ++ S ++
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-IIKSNLENLDLVEQSEVY 94
>gi|297544767|ref|YP_003677069.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842542|gb|ADH61058.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGSEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|20807931|ref|NP_623102.1| N-6 adenine-specific DNA methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479492|ref|ZP_05092816.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
gi|20516500|gb|AAM24706.1| N6-adenine-specific methylase [Thermoanaerobacter tengcongensis
MB4]
gi|214034577|gb|EEB75327.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
Length = 189
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG + +K+ S +G +VRP + VK A F+IL + + +LDL++GTG+
Sbjct: 6 LRVIGGTLKGRKIKSLEGEEVRPTSDRVKEALFNILMN------RIEGSVFLDLFAGTGN 59
Query: 169 VGIEAISRGCSEVHFVE 185
VGIEA+SRG +FV+
Sbjct: 60 VGIEALSRGAEFCYFVD 76
>gi|386398427|ref|ZP_10083205.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM1253]
gi|385739053|gb|EIG59249.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM1253]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IADARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVETLGLGGVTKVY 100
>gi|291007089|ref|ZP_06565062.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
Length = 193
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 5 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+EA+SRG + FVE D V +L N GF DV S+ +VET L A
Sbjct: 59 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA 108
>gi|110632790|ref|YP_672998.1| putative methyltransferase [Chelativorans sp. BNC1]
gi|110283774|gb|ABG61833.1| putative methyltransferase [Chelativorans sp. BNC1]
Length = 186
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R ++L SPK +RP + + + F+I++ + P S+ R LD +SG+G+
Sbjct: 1 MRIVGGALRGRQLTSPKSDAIRPTTDRARESLFNIIEHS--YPGSIEGARVLDFFSGSGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAGYCLFVE 75
>gi|134102544|ref|YP_001108205.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
gi|133915167|emb|CAM05280.1| possible methyltransferase (methylase) [Saccharopolyspora erythraea
NRRL 2338]
Length = 208
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 20 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 73
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+EA+SRG + FVE D V +L N GF DV S+ +VET L A
Sbjct: 74 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA 123
>gi|410727104|ref|ZP_11365327.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
gi|410599439|gb|EKQ53992.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
Length = 185
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 12/100 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIQEAVVVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGF 204
+G+E+ SRG SEV+ + P + NV NL++ F
Sbjct: 55 LGLESASRGASEVYLFDKSSVTFPLLKQNV--ENLKFQDF 92
>gi|337292454|emb|CCB90476.1| putative rRNA methyltransferase ylbH [Waddlia chondrophila 2032/99]
Length = 193
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 9 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 62
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
S+GIEA+SRG FV+ D + + N++ G D +
Sbjct: 63 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA 102
>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 193
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 11/99 (11%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++++GGK + +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRIIGGKYKGRRIKSLPKRSDTKLLRPTTERVKESVFSILNN------YLEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
GTG+VGIEAISRG +V FVE D N++ NL G
Sbjct: 55 GTGNVGIEAISRGAKKVVFVENDKR-FCNLIEENLRKLG 92
>gi|435853930|ref|YP_007315249.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
gi|433670341|gb|AGB41156.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L S DVRP + K A F+IL + R LDLY+G G
Sbjct: 1 MRIIAGKNKGKRLKSLDRRDVRPTSDRTKEALFNIL------GPDVVGTRCLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEAISRG +EV F+E + + +
Sbjct: 55 LGIEAISRGANEVTFIEQNKQIAKTI 80
>gi|297717850|gb|ADI50068.1| putative methyltransferase [Candidatus Odyssella thessalonicensis
L13]
Length = 193
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
+G+EA+SRG + V FVE P ++N+L NL+ F + +H +
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLI 100
>gi|407474117|ref|YP_006788517.1| RsmD family RNA methyltransferase [Clostridium acidurici 9a]
gi|407050625|gb|AFS78670.1| RNA methyltransferase, RsmD family [Clostridium acidurici 9a]
Length = 187
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L SPKG++ RP + VK + F+IL LDL+SG+G
Sbjct: 1 MRVITGIARGHSLKSPKGLNTRPTSDKVKESIFNILGYID------EKSTVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+GIE +SRG +FV+ D + ++ NL T L+ S ++ V
Sbjct: 55 IGIEFLSRGAETCYFVDSDINSIK-IIKENLSNTRLLEKSLVYKNNV 100
>gi|253573471|ref|ZP_04850814.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846999|gb|EES75004.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 200
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGRARGRSLKAVPGMGTRPTTDKVKEAIFSMIGP------YFDGGSALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + F++ D + + NL+ TGF ++ ++
Sbjct: 55 LGIEALSRGMDKAVFIDKDFKSIETIR-QNLKATGFETMAEVY 96
>gi|119475397|ref|ZP_01615750.1| hypothetical protein GP2143_16296 [marine gamma proteobacterium
HTCC2143]
gi|119451600|gb|EAW32833.1| hypothetical protein GP2143_16296 [marine gamma proteobacterium
HTCC2143]
Length = 206
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK R +KL P +RP + V+ F+ L A + R LDL++G+G+
Sbjct: 17 LRIIGGKWRGRKLAFPSIEGLRPTPDRVRETLFNWL------AADVSAARCLDLFAGSGA 70
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207
+G+EA+SRG S+V FV+ P + LI NL G +V
Sbjct: 71 LGLEALSRGASQVDFVDRSPEPIKQ-LIENLRLLGAENV 108
>gi|297620377|ref|YP_003708514.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
gi|297375678|gb|ADI37508.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
Length = 185
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 1 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
S+GIEA+SRG FV+ D + + N++ G D +
Sbjct: 55 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA 94
>gi|294084709|ref|YP_003551467.1| hypothetical protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664282|gb|ADE39383.1| conserved hypothetical protein 95 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 189
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R KL + G RP + V+ F+IL + G L+ LDL+SGTG+
Sbjct: 1 MRIIGGRHRGTKLANLGGDKTRPTADRVRENLFNIL-AGGNYGEQLKDAHVLDLFSGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SRG FVE D +S VL N+
Sbjct: 60 LGLEALSRGARTACFVEKDHNALS-VLRANI 89
>gi|297170258|gb|ADI21295.1| N6-adenine-specific methylase [uncultured gamma proteobacterium
HF0010_09F21]
Length = 184
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G +++ + K +++P E ++ F L+ + LDL++G+GS
Sbjct: 5 LRIISGTLGSRRIKTSKNANLKPTPEKLREKIFSWLK------PDIENSECLDLFAGSGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIEAIS G F+E +P + N L N+ +D S +H R E F+ R ++
Sbjct: 59 LGIEAISNGAKSCTFIEQNPSLYKN-LKDNISSLNVVDKSKLHRTRAEDFVRRFKE 113
>gi|344924318|ref|ZP_08777779.1| N6-adenine-specific methylase [Candidatus Odyssella
thessalonicensis L13]
Length = 204
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
+G+EA+SRG + V FVE P ++N+L NL+ F + +H +
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLI 100
>gi|160892739|ref|ZP_02073529.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
gi|156865780|gb|EDO59211.1| RNA methyltransferase, RsmD family [Clostridium sp. L2-50]
Length = 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + MD RP + +K F+I+ L +LDL+SG+G+
Sbjct: 1 MRVIAGTARSLRLETIDTMDTRPTTDRIKETLFNIISR------ELPDCTFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+ IEA+SRG + VE + V + + NLE+TG D + + T
Sbjct: 55 IAIEALSRGAKQAVLVEQNRKAV-DCINRNLEFTGLKDKARVIT 97
>gi|363897513|ref|ZP_09324052.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
gi|361959010|gb|EHL12307.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
Length = 188
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPDGLDTRPTQDRIKETLFNIIQ------FDLMNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + F +
Sbjct: 55 LGIEALSRGAARAVFCD 71
>gi|320160572|ref|YP_004173796.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
gi|319994425|dbj|BAJ63196.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
Length = 193
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ GKAR +L S G RP+ ++VK A F+IL GG + +LD++ GTGSV
Sbjct: 5 RIISGKARGTRLKSVPGDITRPITDMVKEALFNIL---GG---DIYGATFLDMFGGTGSV 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
GIEA+SRG + F+++ V + NLE T
Sbjct: 59 GIEALSRGANFCRFIDLHRVAVQTIRT-NLELT 90
>gi|317121771|ref|YP_004101774.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
gi|315591751|gb|ADU51047.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
Length = 199
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLRVPAGRQVRPTTDRVRQALFNILGPA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVS 192
+ IEA+SRG E VE D VV+
Sbjct: 55 LAIEALSRGAREALLVEADRRVVA 78
>gi|225378032|ref|ZP_03755253.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
gi|225210033|gb|EEG92387.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
Length = 168
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +GMD RP + +K F++LQ+ GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGMDTRPTTDRIKETLFNMLQNDVPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + + + N+ +T F
Sbjct: 54 QIGLEAVSRGARYAVFVENNKKACA-CIEDNIHFTKF 89
>gi|224531595|ref|ZP_03672227.1| putative methyltransferase [Borrelia valaisiana VS116]
gi|224511060|gb|EEF81466.1| putative methyltransferase [Borrelia valaisiana VS116]
Length = 189
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKTCSVRPVMSLVREAFFSIIFK------DIVDSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+ +EA+SRG S H VE +
Sbjct: 65 IMSVEALSRGASLAHLVECN 84
>gi|317132996|ref|YP_004092310.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
gi|315470975|gb|ADU27579.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
Length = 185
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + G++ RP E VK A F +Q L R LDL++G+G
Sbjct: 1 MRVITGSARGARLETLSGLETRPTAERVKEALFSSIQF------ELEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIE++SRG + FV+ V ++ NL T + + + E FL RA
Sbjct: 55 LGIESLSRGAALAVFVDQSADAV-KIIKANLTHTRLFEKARVLETEAELFLARA 107
>gi|374309684|ref|YP_005056114.1| methyltransferase [Granulicella mallensis MP5ACTX8]
gi|358751694|gb|AEU35084.1| methyltransferase [Granulicella mallensis MP5ACTX8]
Length = 191
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + L S +G+ RP + ++ F++L + R++DLY+G+G+
Sbjct: 1 MRVIGGKFRSRVLQSSRGLATRPTSDRLRETLFNVL------ALRIEGARFVDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VGIEA+SRG F E P V+ +
Sbjct: 55 VGIEALSRGAQFCWFAEKAPAAVTAI 80
>gi|398823883|ref|ZP_10582234.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. YR681]
gi|398225408|gb|EJN11679.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. YR681]
Length = 185
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IPDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVETLGLGGVTKVY 100
>gi|225016608|ref|ZP_03705800.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
gi|224950572|gb|EEG31781.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
R ++V+ G AR +KL + +G DVRP + VK F I+Q L LDL++G+
Sbjct: 4 RFMRVITGSARGRKLRTLEGQDVRPTTDRVKEGIFSIIQ------FDLPGANVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G +GIEA+SRG FV+ V NL+ G S + E+FL
Sbjct: 58 GQLGIEALSRGAKFCVFVD-SSRASHEVEKENLKTVGLFKQSRVVLSEAESFL 109
>gi|168188108|ref|ZP_02622743.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
gi|169294056|gb|EDS76189.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
Length = 185
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+E++SRG E + V+ P
Sbjct: 55 LGLESVSRGAKECYLVDRYP 74
>gi|118444370|ref|YP_878304.1| methyltransferase [Clostridium novyi NT]
gi|118134826|gb|ABK61870.1| methyltransferase, putative [Clostridium novyi NT]
Length = 185
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+E++SRG E + V+ P
Sbjct: 55 LGLESVSRGAKECYLVDRYP 74
>gi|383774359|ref|YP_005453426.1| putative methyltransferase [Bradyrhizobium sp. S23321]
gi|381362484|dbj|BAL79314.1| putative methyltransferase [Bradyrhizobium sp. S23321]
Length = 184
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L +P D+RP + ++ + F+IL A P ++ R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLAAPSSRDIRPTADRLRESVFNILVHAYEDP--IQDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVESLGLGGVTKVY 100
>gi|169830816|ref|YP_001716798.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637660|gb|ACA59166.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
Length = 187
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L + G+ VRP V+ A F+IL A P S R+LDLY+GTG+
Sbjct: 1 MRIIAGNLKGRRLQAGSGLVVRPTTGRVREALFNIL--AQRVPES----RFLDLYAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
VG+EA+SRG S FVE D V + +L L TG
Sbjct: 55 VGLEALSRGASLAVFVENDRRVAA-ILKRRLAETGL 89
>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
Length = 192
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R KKL R ++K + F+ LQ P S W++++SG GS
Sbjct: 6 IKIIGGKYRGKKLYMGDKEVTRSTKNILKESVFNTLQWE--VPDST----WVEMFSGVGS 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+G+EAISRG + +F+E DP + VL N++
Sbjct: 60 IGLEAISRGAKKAYFLEKDP-EAARVLKKNID 90
>gi|407770826|ref|ZP_11118192.1| hypothetical protein TH3_15074 [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407286209|gb|EKF11699.1| hypothetical protein TH3_15074 [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 191
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG----GCPASLRPGRWLDLYS 164
++++GG R + L +P G D RP ++ V+ A F+IL A L G LD Y+
Sbjct: 1 MRIVGGSLRGRLLTAPTGRDTRPTLDRVREALFNILTHASRWYEDDQNPLYDGLILDAYA 60
Query: 165 GTGSVGIEAISRGCSEVHFVEMD 187
G+G++G+EAISRG + F ++D
Sbjct: 61 GSGALGLEAISRGAQKAVFFDLD 83
>gi|386814240|ref|ZP_10101464.1| putative methyltransferase [planctomycete KSU-1]
gi|386403737|dbj|GAB64345.1| putative methyltransferase [planctomycete KSU-1]
Length = 180
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISRGCS 179
L S KG RP+++ VKG+ F IL + + PG R +DLY+GTG++GIEA+SRG
Sbjct: 3 LCSVKGDKTRPILDRVKGSLFSIL-------SHVIPGSRIIDLYAGTGAIGIEALSRGAK 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
FVE + + V+ NLE T D + +
Sbjct: 56 FCIFVEREKSAI-QVIKKNLETTKLQDKAQV 85
>gi|313893400|ref|ZP_07826972.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442041|gb|EFR60461.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 158
str. F0412]
Length = 183
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGVDTRPTLDRVRESVFNVLANRGIFGTDV-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|197106627|ref|YP_002132004.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
gi|196480047|gb|ACG79575.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
Length = 187
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K L++P G RP + + A F+IL+ A P +R R +DL++G+G+
Sbjct: 1 MRIVSGEFRGKALVTPPGQGTRPTSDRARQAIFNILEHAPWSP-GVRDLRVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EA+SRG + FVE D + N++ G + +H
Sbjct: 60 LGFEALSRGAAFCLFVETDE-AARGAIRENVDGMGLFGRTRVH 101
>gi|167037713|ref|YP_001665291.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040374|ref|YP_001663359.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166854614|gb|ABY93023.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166856547|gb|ABY94955.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 186
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 3 LRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 57 IGIEALSRGAQFCYFVD 73
>gi|238019390|ref|ZP_04599816.1| hypothetical protein VEIDISOL_01254 [Veillonella dispar ATCC 17748]
gi|237864089|gb|EEP65379.1| hypothetical protein VEIDISOL_01254 [Veillonella dispar ATCC 17748]
Length = 183
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGVDTRPTLDRVRESVFNVLSNRG-----IFGTHVLDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|160947552|ref|ZP_02094719.1| hypothetical protein PEPMIC_01487 [Parvimonas micra ATCC 33270]
gi|158446686|gb|EDP23681.1| RNA methyltransferase, RsmD family [Parvimonas micra ATCC 33270]
Length = 180
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL G LDL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPMDYSVRPTTDKIKESIFNILFEIGESSVV------LDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIE +SRG +V+F + + + NLE G L S I
Sbjct: 55 IGIEFLSRGAEKVYFCDFSDDSIK-ITKRNLENAGLLTKSII 95
>gi|114321803|ref|YP_743486.1| methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
gi|114228197|gb|ABI57996.1| 16S rRNA m(2)G-966 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 192
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG R ++L P+G D+RP + ++ F+ +Q A + R LDL++G+G
Sbjct: 5 LRIIGGAWRGRRLAVPRGPDLRPTGDRIRETLFNWVQ------ARIPGARCLDLFAGSGV 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG +EV FVE + V + +
Sbjct: 59 LGLEALSRGAAEVVFVERNARVAAAL 84
>gi|338740648|ref|YP_004677610.1| methyltransferase with SAM-dependent methyltransferase domain
[Hyphomicrobium sp. MC1]
gi|337761211|emb|CCB67044.1| putative methyltransferase with SAM-dependent methyltransferase
domain [Hyphomicrobium sp. MC1]
Length = 188
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L +P M +RP + V+ + F+IL + G SL R +DL++GTG+
Sbjct: 1 MRVVAGRFRGRALQAPDDMSIRPTSDRVRESVFNIL-THGIEGFSLNGARVIDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG + FVE P
Sbjct: 60 LGIEAVSRGAAYCLFVEDAP 79
>gi|397906406|ref|ZP_10507213.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
gi|397160549|emb|CCJ34550.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
Length = 187
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + +P+GM+ RP ++ VK + F+I+ + + LD+++G+G+
Sbjct: 1 MRIITGEAKGRIIKAPEGMNTRPTLDRVKESVFNIISN------KIYDAIVLDMFAGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EAISRG F+E D VL N++ F D S +
Sbjct: 55 LGLEAISRGAKFCTFIEKDKSAYK-VLKENIKNLNFEDRSKAY 96
>gi|384215498|ref|YP_005606664.1| hypothetical protein BJ6T_17950 [Bradyrhizobium japonicum USDA 6]
gi|354954397|dbj|BAL07076.1| hypothetical protein BJ6T_17950 [Bradyrhizobium japonicum USDA 6]
Length = 184
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P ++ R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IQDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SRG FV+
Sbjct: 59 LGIEASSRGAKFTLFVD 75
>gi|289450650|ref|YP_003474688.1| RsmD family RNA methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185197|gb|ADC91622.1| RNA methyltransferase, RsmD family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 190
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G AR +L+ PKG RP + K F++LQ+ S LDL++G+G +
Sbjct: 3 RVISGMARSIQLVCPKGRTTRPSADKTKEGIFNVLQA----RLSFAGLHVLDLFAGSGQL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
IEA+SRG + V+ +I NL+ T +++ I+T V FL +A
Sbjct: 59 AIEALSRGAARATLVDRSNEARQAQII-NLQKTHLTELADIYTTSVAGFLNQA 110
>gi|309810295|ref|ZP_07704133.1| RNA methyltransferase, RsmD family [Dermacoccus sp. Ellin185]
gi|308435723|gb|EFP59517.1| RNA methyltransferase, RsmD family [Dermacoccus sp. Ellin185]
Length = 223
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L +P G RP + V+ A F L+ G ++ LDLY+G+G
Sbjct: 1 MTRIIAGSAGGRRLDTPPGAGTRPTSDRVREALFSRLEHLG----AMLGADVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
++G+EA SRG + FVE+D V+ V+ N+ GF V + T VE FLE
Sbjct: 57 ALGLEAFSRGAASATFVEVDR-RVATVIRTNVRNLGFSPVRVV-TQAVEKFLE 107
>gi|269797896|ref|YP_003311796.1| methyltransferase [Veillonella parvula DSM 2008]
gi|269094525|gb|ACZ24516.1| methyltransferase [Veillonella parvula DSM 2008]
Length = 183
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHVIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDV-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD 187
V IEA+SRG + H V +D
Sbjct: 56 VAIEALSRGAA--HAVAVD 72
>gi|407976028|ref|ZP_11156930.1| methyltransferase [Nitratireductor indicus C115]
gi|407428529|gb|EKF41211.1| methyltransferase [Nitratireductor indicus C115]
Length = 184
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L+ P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPRSDAIRPTTDRTREALFNVLEHR--YPEKLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG S F+E + ++ N+E G S I
Sbjct: 59 LGLEALSRGASFALFIE-EAAAARALIRTNVEAMGLQGRSKI 99
>gi|226321524|ref|ZP_03797050.1| putative methyltransferase [Borrelia burgdorferi Bol26]
gi|226232713|gb|EEH31466.1| putative methyltransferase [Borrelia burgdorferi Bol26]
Length = 189
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP++ +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVISLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + + L+ N + + R E FL + + F
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSFVE--EFYKFFFQRAEDFLSKKDLF 119
>gi|21223923|ref|NP_629702.1| DNA methylase [Streptomyces coelicolor A3(2)]
gi|4007726|emb|CAA22410.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 195
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+VG+EA+SRG V VE D V +V S+ E RAEQ R
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
>gi|15835388|ref|NP_297147.1| hypothetical protein TC0774 [Chlamydia muridarum Nigg]
gi|270285565|ref|ZP_06194959.1| hypothetical protein CmurN_03933 [Chlamydia muridarum Nigg]
gi|270289576|ref|ZP_06195878.1| hypothetical protein CmurW_04033 [Chlamydia muridarum Weiss]
gi|301336962|ref|ZP_07225164.1| hypothetical protein CmurM_03990 [Chlamydia muridarum MopnTet14]
gi|7190800|gb|AAF39577.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 186
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILAGKFKGKSLKTFSNPAVRPTSGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG V FV+
Sbjct: 55 MGFEAISRGAGSVTFVD 71
>gi|291299626|ref|YP_003510904.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
gi|290568846|gb|ADD41811.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
Length = 188
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG ++L +P+G + RP + V+ A F L++AG L LDLY+G+G
Sbjct: 1 MTRIIGGSLGGRRLSTPEGDNTRPTSDRVREALFGSLEAAG----VLDGAHVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+VG+EA+SRG + FVE + VL N+ G + ++T ++ L++
Sbjct: 57 AVGLEALSRGAASALFVESHA-ATARVLRRNIAALGVAAETDVNTAKLPAALKQ 109
>gi|160946044|ref|ZP_02093267.1| hypothetical protein PEPMIC_00002 [Parvimonas micra ATCC 33270]
gi|158447862|gb|EDP24857.1| conserved hypothetical protein 95 [Parvimonas micra ATCC 33270]
Length = 89
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L SPKG+D RP + +K + F+IL LDL+SG+GS
Sbjct: 1 MRVISGSRKGHRLKSPKGLDTRPTQDRIKESLFNILGDIK------EDSLVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
VGIE +SRG E +F++ + + NL+ T F
Sbjct: 55 VGIEFLSRGSKECYFIDNSLNSIKTIGY-NLDATKF 89
>gi|258652100|ref|YP_003201256.1| methyltransferase [Nakamurella multipartita DSM 44233]
gi|258555325|gb|ACV78267.1| methyltransferase [Nakamurella multipartita DSM 44233]
Length = 189
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L+ PKG+ RP E V+ A LQ+ GG L R LDL++GTG
Sbjct: 1 MTRIVAGRWRGRRLVVPKGVGTRPSAERVREALAGSLQATGG----LVGARVLDLWAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+E SRG S FVE D
Sbjct: 57 ALGLELASRGASSAVFVEKD 76
>gi|347761116|ref|YP_004868677.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
gi|347580086|dbj|BAK84307.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
Length = 192
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS-LRPGRWLDLYSGTG 167
++++ G+ R + L +P G RP + V+ A FD L A LR R LD ++GTG
Sbjct: 1 MRIIAGECRGRSLRAPAGHATRPTADRVRQALFDTLSHASWAGLDFLRGARVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + V FVE D
Sbjct: 61 ALGLEALSRGAASVCFVERD 80
>gi|329851128|ref|ZP_08265885.1| RNA methyltransferase, RsmD family [Asticcacaulis biprosthecum C19]
gi|328839974|gb|EGF89546.1| RNA methyltransferase, RsmD family [Asticcacaulis biprosthecum C19]
Length = 191
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L +P G + RP + + A F++L A P R +D+++G+G+
Sbjct: 1 MRVVGGEFKGRSLATPDGRNTRPTSDRAREAIFNVLAHADWAP-DFDGARVMDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EA+SRG + F+E D + N+E G + +H
Sbjct: 60 LGFEALSRGATFCLFIETDEG-ARGAIRDNVEAFGLFGTTRVH 101
>gi|187778911|ref|ZP_02995384.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
15579]
gi|187772536|gb|EDU36338.1| RNA methyltransferase, RsmD family [Clostridium sporogenes ATCC
15579]
Length = 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+G+EA SRG + V+ P +L N++ F D+ + + L E+F R
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFAR 109
>gi|168180623|ref|ZP_02615287.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226949847|ref|YP_002804938.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|421836110|ref|ZP_16270689.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
gi|182668549|gb|EDT80528.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226841020|gb|ACO83686.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|409742094|gb|EKN41627.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
Length = 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG + V+ P
Sbjct: 55 LGLEAASRGAKFSYLVDKSP 74
>gi|387818717|ref|YP_005679064.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
gi|322806761|emb|CBZ04330.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
Length = 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG + V+ P
Sbjct: 55 LGLEAASRGAKFSYLVDKSP 74
>gi|119717508|ref|YP_924473.1| putative methyltransferase [Nocardioides sp. JS614]
gi|119538169|gb|ABL82786.1| putative methyltransferase [Nocardioides sp. JS614]
Length = 198
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG+A +++ +P+G RP + V+ A F ++S G SL R LDLY+G+G
Sbjct: 1 MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCG---SLHGLRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA SRG V VE D
Sbjct: 58 AVGLEAWSRGAEAVTLVESD 77
>gi|383761399|ref|YP_005440381.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381667|dbj|BAL98483.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 218
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KLL RP+ + K A F IL + + R LDL+ GTGS
Sbjct: 1 MRVIAGKAKGRKLLMTPSEGTRPITDRAKEALFSILGN------WIVDARVLDLFGGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VGIEA+SRG + V FVE+ ++ +
Sbjct: 55 VGIEALSRGAAWVDFVELSRKAIATI 80
>gi|402574121|ref|YP_006623464.1| RsmD family RNA methyltransferase [Desulfosporosinus meridiei DSM
13257]
gi|402255318|gb|AFQ45593.1| RNA methyltransferase, RsmD family [Desulfosporosinus meridiei DSM
13257]
Length = 183
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +G+ RP + VKGA F +L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGIHTRPTSDKVKGAIFSVLGE------KVINSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ IEA+SRG E VE + + V+ NL G + +H + F++R
Sbjct: 55 LAIEALSRGSREAVLVEKN-YDAYQVIQRNLSLLGVAGKTKLHLMDAFKFIDR 106
>gi|289768870|ref|ZP_06528248.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
gi|289699069|gb|EFD66498.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
Length = 195
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+VG+EA+SRG V VE D V +V S+ E RAEQ R
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
>gi|344198761|ref|YP_004783087.1| methyltransferase [Acidithiobacillus ferrivorans SS3]
gi|343774205|gb|AEM46761.1| methyltransferase [Acidithiobacillus ferrivorans SS3]
Length = 189
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G+ R ++LL+P G +RP V+ F+ L GG A R LDL++G+G+
Sbjct: 3 VSIIAGRHRGRRLLTPAGRSLRPTPGAVRETLFNWL---GGQVAGARV---LDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG EV FVE DP
Sbjct: 57 LGLEAWSRGAREVVFVEKDP 76
>gi|302554402|ref|ZP_07306744.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
gi|302472020|gb|EFL35113.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
Length = 195
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG S VE DP V
Sbjct: 59 AVGLEALSRGASHTLLVEADPRATRTV 85
>gi|424834145|ref|ZP_18258861.1| putative methyltransferase [Clostridium sporogenes PA 3679]
gi|365978920|gb|EHN14986.1| putative methyltransferase [Clostridium sporogenes PA 3679]
Length = 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG + V+ P
Sbjct: 55 LGLEAASRGAKFSYLVDKSP 74
>gi|423074920|ref|ZP_17063640.1| RNA methyltransferase, RsmD family [Desulfitobacterium hafniense
DP7]
gi|361854126|gb|EHL06231.1| RNA methyltransferase, RsmD family [Desulfitobacterium hafniense
DP7]
Length = 180
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++ +EA+SRG E +E ++ N++ G ++ + + T+ +LE+
Sbjct: 54 NLALEALSRGAKEAVLIE-KSRTAQQIIRENIDHMG-VEQARLITMDAFAYLEQ 105
>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
Length = 182
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L S KG RP + VKGA F S GG S GR LD YSGTG+
Sbjct: 1 MRIVAGKYGSRPLKSCKGDTTRPTADKVKGAVFS---SLGG---SFDSGRMLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+ +EA+SRG VE D + NV+ N++
Sbjct: 55 MALEALSRGMKFATMVEKDRMAL-NVICENVK 85
>gi|332298023|ref|YP_004439945.1| methyltransferase [Treponema brennaborense DSM 12168]
gi|332181126|gb|AEE16814.1| methyltransferase [Treponema brennaborense DSM 12168]
Length = 184
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 16/122 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + + P G+ +RP M+ ++ + F IL G +LDL+SG+G+
Sbjct: 1 MRITGGELRGRIIKCPDGV-IRPAMDRMRESVFAILGDLSG-------KSFLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE- 223
+ IEA SRG + V VE D V+SNV + E + S H + VE F++R +
Sbjct: 53 IAIEAASRGAAHVELVEKDRIKTDTVLSNVSVTEKELGKKI---SCHFMAVELFMKRCKS 109
Query: 224 QF 225
QF
Sbjct: 110 QF 111
>gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
Length = 180
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
++ +EA+SRG E +E
Sbjct: 54 NLALEALSRGAKEAVLIE 71
>gi|168182571|ref|ZP_02617235.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|237795933|ref|YP_002863485.1| RsmD family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182674241|gb|EDT86202.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|229261371|gb|ACQ52404.1| RNA methyltransferase, RsmD family [Clostridium botulinum Ba4 str.
657]
Length = 185
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG + V+ P
Sbjct: 55 LGLEAASRGAKFSYLVDKSP 74
>gi|296447800|ref|ZP_06889714.1| methyltransferase [Methylosinus trichosporium OB3b]
gi|296254719|gb|EFH01832.1| methyltransferase [Methylosinus trichosporium OB3b]
Length = 184
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L +P+ D+RP + ++ + FDIL A G P + R +DL++G G+
Sbjct: 1 MRIVAGALRGRNLKAPQSRDIRPTSDRLRESIFDILAHAYGDPVA--GARVIDLFAGVGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG FV+ D +L N++ G V+ +
Sbjct: 59 LGLEALSRGAERALFVD-DGVEARALLRANIDALGLGGVTRV 99
>gi|365896197|ref|ZP_09434281.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
gi|365423044|emb|CCE06823.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
Length = 184
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPTSRNIRPTQDRLRESLFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEAISRG + FV+
Sbjct: 59 LGIEAISRGAAFALFVD 75
>gi|327399183|ref|YP_004340052.1| methyltransferase [Hippea maritima DSM 10411]
gi|327181812|gb|AEA33993.1| methyltransferase [Hippea maritima DSM 10411]
Length = 177
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ GK + K+L K ++RP +VK + FD ++ GC +LDL++G+G
Sbjct: 1 MRIIAGKLKYKRLYFKKNQNLRPTRNIVKKSFFDTMRGLIEGCV-------FLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
SVG+EA+SRG V FV+
Sbjct: 54 SVGMEALSRGAKRVVFVD 71
>gi|375086061|ref|ZP_09732579.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
gi|374566109|gb|EHR37360.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
Length = 190
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTGS
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+ +EA+SRG + V+ +S + N T +D S+I
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI 95
>gi|254418514|ref|ZP_05032238.1| putative methyltransferase [Brevundimonas sp. BAL3]
gi|196184691|gb|EDX79667.1| putative methyltransferase [Brevundimonas sp. BAL3]
Length = 187
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + +++P+G RP + + A F++L+ A SL R +DLY+G+G+
Sbjct: 1 MRIVAGSLKGRAIVAPEGQGTRPTSDRARQAVFNVLEHAA-WAESLNGARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EAISRG FVE D + N + G + + +H
Sbjct: 60 LGFEAISRGAGFCLFVETDDG-ARGAIRENADAYGVMGRTRVH 101
>gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51]
gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 180
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
++ +EA+SRG E +E
Sbjct: 54 NLALEALSRGAKEAVLIE 71
>gi|329889974|ref|ZP_08268317.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta ATCC
11568]
gi|328845275|gb|EGF94839.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta ATCC
11568]
Length = 191
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + +++P+G + RP + + A F++L+ A L R +DLY+G+G+
Sbjct: 1 MRIVAGQYRGRAIVTPEGQNTRPTSDRARQAIFNVLEHAP-WAEGLHEARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EA+SRG + FV+ D + N++ G +H
Sbjct: 60 LGFEALSRGAAFCLFVDTDDG-ARGAIRENMDAYGLFGRCRVH 101
>gi|203284126|ref|YP_002221866.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
gi|201083569|gb|ACH93160.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 28 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S VH V+ + + NVLI N + + + E FL + + F
Sbjct: 82 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFDIVN--EPYKFFFTKAEFFLAKRDLF 136
>gi|92118636|ref|YP_578365.1| hypothetical protein Nham_3170 [Nitrobacter hamburgensis X14]
gi|91801530|gb|ABE63905.1| conserved hypothetical protein 95 [Nitrobacter hamburgensis X14]
Length = 184
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVA--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGATFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|399073738|ref|ZP_10750645.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
gi|398041254|gb|EJL34326.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
Length = 187
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIATPPGDTTRPTSDRARQAVFNILEHAAWAP-PLHGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 60 LGLEALSRGAAFCLFVETD 78
>gi|350269797|ref|YP_004881105.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
gi|348594639|dbj|BAK98599.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
Length = 190
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L +GM+ RP + VK F LQ + R LDL++GTG
Sbjct: 1 MRVITGSARGRRLKELEGMETRPTTDRVKEGLFSALQF------EIEGRRVLDLFAGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG + FV+ V ++ NL+ TG D + +
Sbjct: 55 LGIEALSRGAAGCVFVDRRADAV-KLIRENLKITGLTDRARV 95
>gi|337286565|ref|YP_004626038.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
gi|335359393|gb|AEH45074.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
Length = 178
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GK + + L SPK +RPMM+ V+ A FD L + + LDL+ GTG+
Sbjct: 1 MRITAGKYKGRVLKSPKSRTIRPMMDKVRKALFDSLG------LKVEGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG +V FV+ +S V
Sbjct: 55 LGLEALSRGAEKVVFVDQSGEALSLV 80
>gi|347531756|ref|YP_004838519.1| adenine-specific DNA-methyltransferase [Roseburia hominis A2-183]
gi|345501904|gb|AEN96587.1| site-specific DNA-methyltransferase (adenine-specific) [Roseburia
hominis A2-183]
Length = 183
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++++ G AR L +P+GMD RP + +K F+I+Q PG + LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKAPEGMDTRPTTDRIKETLFNIIQDE-------VPGAYFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
+G+EA+SRG FV+
Sbjct: 54 QMGLEAVSRGARYAVFVD 71
>gi|119963824|ref|YP_948202.1| N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403527676|ref|YP_006662563.1| SAM-dependent methyltransferase, class I [Arthrobacter sp. Rue61a]
gi|119950683|gb|ABM09594.1| putative N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403230103|gb|AFR29525.1| putative SAM-dependent methyltransferase, class I [Arthrobacter sp.
Rue61a]
Length = 197
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G L S G RP + VK A F L+S A + R LDLY+G+GS+
Sbjct: 12 RIIAGVGGGNPLTSVPGTATRPTTDRVKEALFSRLESL----AVIDDARVLDLYAGSGSL 67
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---DVSSIHTVRVETFLERA 222
GIE+ SRG V VE D S+V N + L S+H +VE+FLERA
Sbjct: 68 GIESASRGARTVDLVEFDA-KASDVCQRNADLVNQLLGGKRVSVHRSKVESFLERA 122
>gi|282890158|ref|ZP_06298688.1| hypothetical protein pah_c014o002 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174319|ref|YP_004651129.1| rRNA methyltransferase ylbH [Parachlamydia acanthamoebae UV-7]
gi|281499815|gb|EFB42104.1| hypothetical protein pah_c014o002 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478677|emb|CCB85275.1| putative rRNA methyltransferase ylbH [Parachlamydia acanthamoebae
UV-7]
Length = 196
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + +++PKG RP ++ A F+I C + +LDL++G+G+
Sbjct: 1 MRIISGLYKNRTIVAPKGDKTRPTSSQLRAALFNI------CQLYIEDAVFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+G+EA+SRG +V FV+ + + + NLE
Sbjct: 55 IGLEALSRGAKKVVFVDNQRYCI-QCIQKNLE 85
>gi|342216537|ref|ZP_08709184.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341587427|gb|EGS30827.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 178
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL +PK +D RP + VK F++L++ LR + LD ++GTG+
Sbjct: 1 MRIISGSKRGLKLNAPKSLDTRPTEDRVKENMFNLLEN-------LRDLKVLDAFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S V F E
Sbjct: 54 LGLEALSRGASYVLFCE 70
>gi|262038077|ref|ZP_06011482.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
gi|261747897|gb|EEY35331.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
Length = 186
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + +K+ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRITAGMLKNRKIKSREGRETRPTLERIKEAIFSII------GEQVVEAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+ IEA+SRG +E D + ++I N+
Sbjct: 55 MAIEALSRGAGRAVMIEQDKEALR-IIIENI 84
>gi|256752289|ref|ZP_05493152.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300914458|ref|ZP_07131774.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307724306|ref|YP_003904057.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|320116128|ref|YP_004186287.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|256748857|gb|EEU61898.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300889393|gb|EFK84539.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307581367|gb|ADN54766.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|319929219|gb|ADV79904.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 184
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|258511318|ref|YP_003184752.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478044|gb|ACV58363.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 184
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGISLESPRGSAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG S FV+ DP
Sbjct: 54 LGIEALSRGASRAIFVDKDP 73
>gi|284032692|ref|YP_003382623.1| methyltransferase [Kribbella flavida DSM 17836]
gi|283811985|gb|ADB33824.1| methyltransferase [Kribbella flavida DSM 17836]
Length = 196
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR +++ P G RP + V+ A F L+S G L LDLY+G+G
Sbjct: 1 MTRIIGGAARGRRIGVPAGTGTRPTADRVREAMFSSLESEFGTLLGLNV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+VG+EA+SRG + VE D ++V+ N+ G
Sbjct: 58 AVGLEALSRGAARAVLVEADR-RAADVIAANIRVVGL 93
>gi|299144504|ref|ZP_07037583.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517592|gb|EFI41332.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 181
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KLLSP+ + RP + +K F++L + LDL+SG+GS
Sbjct: 1 MRVISGKNRGLKLLSPRDLRTRPTEDRIKENVFNLL------GQNFFDANVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIE +SRG +FV+ D + +
Sbjct: 55 IGIEFLSRGAKFCYFVDNDKDAIDTI 80
>gi|384564907|ref|ZP_10012011.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
gi|384520761|gb|EIE97956.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
Length = 185
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+AR + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRARGRILRVPPKG--TRPTTELVREALFSALEAAD----ELTDVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G++G+EA+SRG E FVE D +++L N+ G V + +VET +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIAKVGLGGV--VRQGKVETVV 104
>gi|229918535|ref|YP_002887181.1| methyltransferase [Exiguobacterium sp. AT1b]
gi|229469964|gb|ACQ71736.1| methyltransferase [Exiguobacterium sp. AT1b]
Length = 187
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +L + G RP + VK + F+I+ G+ LDLY+G+G
Sbjct: 1 MRVISGERKGTRLKAVPGTATRPTTDKVKESLFNII------GPYFSGGKALDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE----RAEQ 224
+GIEA+SRGC E FV+ P V + NL T + ++ + LE + EQ
Sbjct: 55 LGIEALSRGCDEAIFVDRQPKAVQTIQ-ENLRATHYEVKGKVYRQDAKAVLEQLKVQQEQ 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|203287664|ref|YP_002222679.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
gi|201084884|gb|ACH94458.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
Length = 198
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 17 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 70
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S VH V+ + + NVLI N + + + E FL + + F
Sbjct: 71 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFDIVN--EPYKFFFTKAEFFLAKRDLF 125
>gi|149194071|ref|ZP_01871169.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
gi|149136024|gb|EDM24502.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
Length = 196
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R KKL R +++K + F+ LQ P S W++++SG GS
Sbjct: 6 IRIIGGKYRGKKLYMGDKETTRSTKQILKESIFNSLQWE--VPDST----WVEVFSGVGS 59
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EAISRG + +F+E DP
Sbjct: 60 IGLEAISRGAKKAYFLEKDP 79
>gi|334135210|ref|ZP_08508705.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
gi|333607262|gb|EGL18581.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
Length = 236
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 49 MRVISGSARGRSLKAVPGMSTRPTTDKVKEAIFSMI------GPYFDGGTGLDLFAGTGG 102
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG F++++ + V NLE TG D + I+
Sbjct: 103 LGIEALSRGLDTCIFIDLEKKSLDTVR-HNLEVTGLTDRAEIY 144
>gi|242373354|ref|ZP_04818928.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
gi|242348717|gb|EES40319.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
Length = 180
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|386728803|ref|YP_006195186.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
gi|418978634|ref|ZP_13526434.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|379993458|gb|EIA14904.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|384230096|gb|AFH69343.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
Length = 183
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 4 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLE 200
+GIEA+SRG +V FV+ + V SN+ NLE
Sbjct: 56 LGIEALSRGMDKVIFVDQNFKAVKVIKSNLANLNLE 91
>gi|332653473|ref|ZP_08419218.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
gi|332518619|gb|EGJ48222.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
Length = 186
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G AR ++L +GM+ RP + VK A F+I+Q PGR LDL+ GTG
Sbjct: 1 MRVISGTARGRRLGELEGMETRPTTDRVKEALFNIVQFE-------VPGRKILDLFGGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
+GIEA+SRG FV+ V+ LI N
Sbjct: 54 QLGIEALSRGAEHCTFVDQRSDAVT--LIKN 82
>gi|319892121|ref|YP_004148996.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|386319597|ref|YP_006015760.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
gi|317161817|gb|ADV05360.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|323464768|gb|ADX76921.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
Length = 183
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L + +G + RP M+ VK F+ L + G LDL++G+GS
Sbjct: 1 MRVIAGKHKSKSLETLEGRNTRPTMDKVKEGIFNSLHTV--------EGLGLDLFAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIEA+SRG +V FV+ + V V+ NL+
Sbjct: 53 LGIEALSRGMDKVIFVDQNIRAVK-VIQHNLK 83
>gi|255348862|ref|ZP_05380869.1| methyltransferase [Chlamydia trachomatis 70]
gi|255503402|ref|ZP_05381792.1| methyltransferase [Chlamydia trachomatis 70s]
Length = 190
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG FV+
Sbjct: 55 MGFEAISRGAESATFVD 71
>gi|387602396|ref|YP_005733917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|404478460|ref|YP_006709890.1| methylase [Staphylococcus aureus 08BA02176]
gi|418309912|ref|ZP_12921463.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|283470334|emb|CAQ49545.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|365238035|gb|EHM78874.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|404439949|gb|AFR73142.1| putative methylase [Staphylococcus aureus 08BA02176]
Length = 180
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLE 200
+GIEA+SRG +V FV+ + V SN+ NLE
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVKVIKSNLANLNLE 88
>gi|300775205|ref|ZP_07085067.1| N6-adenine-specific methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300505945|gb|EFK37081.1| N6-adenine-specific methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 190
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + KK+ +PK +VRP + K A F IL++ ++ LDL++G G
Sbjct: 1 MFRIISGKWKAKKIAAPKNFEVRPTTDFAKEALFSILEN----KYDMQSISVLDLFAGIG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
S+ +E SRG + VEM+P
Sbjct: 57 SITLEFASRGGQNITSVEMNP 77
>gi|297566490|ref|YP_003685462.1| hypothetical protein [Meiothermus silvanus DSM 9946]
gi|296850939|gb|ADH63954.1| Protein of unknown function methylase putative [Meiothermus
silvanus DSM 9946]
Length = 172
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 23/126 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
LQ+LGG AR +L P RP ++ A FD L+S P R GR+LDLY+G+G+
Sbjct: 3 LQILGGTARGVRLEVPT--SARPSPVRLRKALFDYLRSR--YP---RKGRFLDLYAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLEWTGFLDVSSIHTVRVETFL----E 220
+G+EA S G EV VE DP V +N L +LE I VE +L
Sbjct: 56 IGLEAASEGF-EVVLVEKDPQAVRILRANALKAHLEV-------RIEPQSVERYLALAAR 107
Query: 221 RAEQFC 226
R EQF
Sbjct: 108 RGEQFT 113
>gi|218290491|ref|ZP_03494611.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
gi|218239512|gb|EED06707.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
Length = 184
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGVSLESPRGGAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG S FV+ DP
Sbjct: 54 LGIEALSRGASRAIFVDKDP 73
>gi|304373213|ref|YP_003856422.1| hypothetical Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis HUB-1]
gi|304309404|gb|ADM21884.1| putative Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis HUB-1]
Length = 183
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRAREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL 195
++GIEA+SRG EV E+D V N++
Sbjct: 55 AIGIEALSRGAKEVIASELDKKVFDNIV 82
>gi|427414336|ref|ZP_18904526.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
gi|425714712|gb|EKU77715.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
Length = 184
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ L +PKGM RP + V+ + F++L + G ++ LDL+SGTG+
Sbjct: 1 MRIIAGRAKGHTLKAPKGMSTRPTQDRVRESIFNVLSNYGLIETTV-----LDLFSGTGA 55
Query: 169 VGIEAISRGCS 179
G+EA+SRG S
Sbjct: 56 FGLEAVSRGAS 66
>gi|409402609|ref|ZP_11252130.1| putative methyltransferase [Acidocella sp. MX-AZ02]
gi|409128816|gb|EKM98697.1| putative methyltransferase [Acidocella sp. MX-AZ02]
Length = 179
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G+ R + L +P+G + RP + A FDIL A C L+ + LD+++GTG+
Sbjct: 5 RIIAGRWRGRVLAAPEGRETRPTNIRARQAVFDILAHAPWC--DLQEAKVLDVFAGTGAY 62
Query: 170 GIEAISRGCSEVHFVE 185
G+EA+SRG + F+E
Sbjct: 63 GLEALSRGAASASFIE 78
>gi|402850415|ref|ZP_10898616.1| Ribosomal RNA small subunit methyltransferase D [Rhodovulum sp.
PH10]
gi|402499320|gb|EJW11031.1| Ribosomal RNA small subunit methyltransferase D [Rhodovulum sp.
PH10]
Length = 185
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L P+ +RP + ++ + F+IL A P + R LDL+SGTG+
Sbjct: 1 MRIVGGHLRGRTLAHPRSAAIRPTSDRLRESLFNILAHAYDDP--IADARVLDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + V FV+ D ++ N+E G S I
Sbjct: 59 LGLEALSRGAAFVLFVD-DGAEARALIRQNVETLGLAAKSRI 99
>gi|255659780|ref|ZP_05405189.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
gi|260847851|gb|EEX67858.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
Length = 190
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL S + + LD+++GTG+
Sbjct: 1 MRIITGSARGCRLKTPKGQATRPTSDRIKESLFNILGS------KVYGRKVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA+SRG + FV+ + ++ N T D +++H V L R EQ
Sbjct: 55 LGLEALSRGAASACFVDQ---ATAALIRENAVHTRLQDRATVHGGDVFAQLARFEQ 107
>gi|440533446|emb|CCP58956.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534340|emb|CCP59850.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
Ia/SotonIa3]
Length = 191
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG FV+
Sbjct: 55 MGFEAISRGAESATFVD 71
>gi|15605215|ref|NP_220001.1| methyltransferase [Chlamydia trachomatis D/UW-3/CX]
gi|76789224|ref|YP_328310.1| methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|166154701|ref|YP_001654819.1| methyltransferase [Chlamydia trachomatis 434/Bu]
gi|166155576|ref|YP_001653831.1| methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|237802915|ref|YP_002888109.1| methyltransferase [Chlamydia trachomatis B/Jali20/OT]
gi|255311303|ref|ZP_05353873.1| methyltransferase [Chlamydia trachomatis 6276]
gi|255317604|ref|ZP_05358850.1| methyltransferase [Chlamydia trachomatis 6276s]
gi|255507080|ref|ZP_05382719.1| methyltransferase [Chlamydia trachomatis D(s)2923]
gi|301335974|ref|ZP_07224218.1| methyltransferase [Chlamydia trachomatis L2tet1]
gi|339626169|ref|YP_004717648.1| RNA methyltransferase, RsmD family [Chlamydia trachomatis L2c]
gi|385240013|ref|YP_005807855.1| methyltransferase [Chlamydia trachomatis G/9768]
gi|385240938|ref|YP_005808779.1| methyltransferase [Chlamydia trachomatis G/11222]
gi|385242791|ref|YP_005810630.1| methyltransferase [Chlamydia trachomatis G/9301]
gi|385243694|ref|YP_005811540.1| Methyltransferase [Chlamydia trachomatis D-EC]
gi|385244574|ref|YP_005812418.1| Methyltransferase [Chlamydia trachomatis D-LC]
gi|385246400|ref|YP_005815222.1| methyltransferase [Chlamydia trachomatis G/11074]
gi|389858182|ref|YP_006360424.1| methyltransferase [Chlamydia trachomatis F/SW4]
gi|389859934|ref|YP_006362174.1| methyltransferase [Chlamydia trachomatis F/SW5]
gi|3328923|gb|AAC68087.1| Methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76167754|gb|AAX50762.1| methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|165930689|emb|CAP04186.1| methyltransferase [Chlamydia trachomatis 434/Bu]
gi|165931564|emb|CAP07140.1| methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231274149|emb|CAX10943.1| methyltransferase [Chlamydia trachomatis B/Jali20/OT]
gi|296436018|gb|ADH18192.1| methyltransferase [Chlamydia trachomatis G/9768]
gi|296436946|gb|ADH19116.1| methyltransferase [Chlamydia trachomatis G/11222]
gi|296437879|gb|ADH20040.1| methyltransferase [Chlamydia trachomatis G/11074]
gi|297140379|gb|ADH97137.1| methyltransferase [Chlamydia trachomatis G/9301]
gi|297748617|gb|ADI51163.1| Methyltransferase [Chlamydia trachomatis D-EC]
gi|297749497|gb|ADI52175.1| Methyltransferase [Chlamydia trachomatis D-LC]
gi|339460576|gb|AEJ77079.1| RNA methyltransferase, RsmD family [Chlamydia trachomatis L2c]
gi|380249254|emb|CCE14547.1| methyltransferase [Chlamydia trachomatis F/SW5]
gi|380250129|emb|CCE13658.1| methyltransferase [Chlamydia trachomatis F/SW4]
gi|440525411|emb|CCP50662.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
K/SotonK1]
gi|440526298|emb|CCP51782.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/8200/07]
gi|440527195|emb|CCP52679.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD1]
gi|440528088|emb|CCP53572.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD5]
gi|440528978|emb|CCP54462.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD6]
gi|440531659|emb|CCP57169.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
F/SotonF3]
gi|440532552|emb|CCP58062.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
G/SotonG1]
gi|440536123|emb|CCP61636.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L2b/795]
gi|440537016|emb|CCP62530.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L1/440/LN]
gi|440537905|emb|CCP63419.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L1/1322/p2]
gi|440538795|emb|CCP64309.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L1/115]
gi|440539684|emb|CCP65198.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L1/224]
gi|440540576|emb|CCP66090.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2/25667R]
gi|440541464|emb|CCP66978.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L3/404/LN]
gi|440542351|emb|CCP67865.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/UCH-2]
gi|440543242|emb|CCP68756.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Canada2]
gi|440544133|emb|CCP69647.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L2b/LST]
gi|440545023|emb|CCP70537.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams1]
gi|440545913|emb|CCP71427.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/CV204]
gi|440914175|emb|CCP90592.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams2]
gi|440915065|emb|CCP91482.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams3]
gi|440915956|emb|CCP92373.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Canada1]
gi|440916851|emb|CCP93268.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams4]
gi|440917741|emb|CCP94158.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams5]
Length = 190
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG FV+
Sbjct: 55 MGFEAISRGAESATFVD 71
>gi|374997134|ref|YP_004972633.1| RsmD family RNA methyltransferase [Desulfosporosinus orientis DSM
765]
gi|357215500|gb|AET70118.1| RNA methyltransferase, RsmD family [Desulfosporosinus orientis DSM
765]
Length = 184
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + +G+ RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGDLRGRQLKAVEGIHTRPTSDKVKGAIFNVLGE------KVLNSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ IEA+SRG SE VE + + + NLE G S + + F+ +
Sbjct: 55 LAIEALSRGSSEAVLVEKN-FAAYQTIKKNLEVLGVCQKSKLLLMDAFKFIHK 106
>gi|291538909|emb|CBL12020.1| RNA methyltransferase, RsmD family [Roseburia intestinalis XB6B4]
Length = 184
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E
Sbjct: 54 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME 108
>gi|237804837|ref|YP_002888991.1| methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282496|ref|YP_005156322.1| methyltransferase [Chlamydia trachomatis A2497]
gi|385270189|ref|YP_005813349.1| Methyltransferase [Chlamydia trachomatis A2497]
gi|231273137|emb|CAX10050.1| methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|347975329|gb|AEP35350.1| Methyltransferase [Chlamydia trachomatis A2497]
gi|371908526|emb|CAX09156.1| methyltransferase [Chlamydia trachomatis A2497]
gi|438690422|emb|CCP49679.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/7249]
gi|438691507|emb|CCP48781.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/5291]
gi|438692880|emb|CCP47882.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/363]
Length = 190
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG FV+
Sbjct: 55 MGFEAISRGAESATFVD 71
>gi|423263019|ref|YP_007013044.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis SK76]
gi|422035556|gb|AFX74398.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis SK76]
Length = 183
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRTREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL 195
++GIEA+SRG EV E+D V N++
Sbjct: 55 AIGIEALSRGAKEVIASELDKKVFDNIV 82
>gi|160939086|ref|ZP_02086437.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
gi|158438049|gb|EDP15809.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
Length = 185
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTLDGLDTRPTTDRIKETLFNMLQP------ELADCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GIEA+SRG +E +P + + NL T + + + V T L+R E
Sbjct: 55 IGIEALSRGAGLAVMIENNPKALECIR-ENLSRTKLEERAMVMGCDVITGLKRLE 108
>gi|314933320|ref|ZP_07840685.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
gi|313653470|gb|EFS17227.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
Length = 180
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMTQAEVY 94
>gi|385241868|ref|YP_005809708.1| methyltransferase [Chlamydia trachomatis E/11023]
gi|385245474|ref|YP_005814297.1| methyltransferase [Chlamydia trachomatis E/150]
gi|386262843|ref|YP_005816122.1| methyltransferase [Chlamydia trachomatis Sweden2]
gi|389859058|ref|YP_006361299.1| methyltransferase [Chlamydia trachomatis E/SW3]
gi|289525531|emb|CBJ15009.1| methyltransferase [Chlamydia trachomatis Sweden2]
gi|296435090|gb|ADH17268.1| methyltransferase [Chlamydia trachomatis E/150]
gi|296438811|gb|ADH20964.1| methyltransferase [Chlamydia trachomatis E/11023]
gi|380251007|emb|CCE12769.1| methyltransferase [Chlamydia trachomatis E/SW3]
gi|440529869|emb|CCP55353.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
E/SotonE4]
gi|440530768|emb|CCP56252.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
E/SotonE8]
gi|440535236|emb|CCP60746.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis E/Bour]
Length = 190
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG FV+
Sbjct: 55 MGFEAISRGAESATFVD 71
>gi|408418062|ref|YP_006759476.1| hypothetical protein TOL2_C06030 [Desulfobacula toluolica Tol2]
gi|405105275|emb|CCK78772.1| conserved uncharacterized protein, putative methylase
[Desulfobacula toluolica Tol2]
Length = 180
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +KL +G +RP + + A F+IL +++ + LDL++GTG+
Sbjct: 1 MRIISGSCKGRKLFKLQGRQIRPTSDRTREAVFNIL------GQNIKKAKVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL 195
+GIEA+SRG F++ D ++ L
Sbjct: 55 LGIEALSRGAEHTTFIDRDCDIIRQNL 81
>gi|224476238|ref|YP_002633844.1| hypothetical protein Sca_0749 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420845|emb|CAL27659.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 183
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGG 52
Query: 169 VGIEAISRGCSEVHFVEMD---PWVVSNVLIPNLEWT 202
+GIEA+SRG E+ FV+ + ++ N L NL+ T
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVKIIKNNL-KNLDLT 88
>gi|260587793|ref|ZP_05853706.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|331083795|ref|ZP_08332904.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542058|gb|EEX22627.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|330403220|gb|EGG82780.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
Length = 183
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + G++ RP + VK F++LQ L R+LD+++G+G
Sbjct: 1 MRVIAGSAKSMPLKTIPGLETRPTTDRVKETLFNMLQP------YLCECRFLDIFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLERAEQF 225
+GIEA+SRG F+E + + V+ NL++T D + + + FLE E F
Sbjct: 55 IGIEALSRGAQFCVFIEKNRKAAA-VIEDNLKFTKLADRADVWCKDIFQAVAFLENEEPF 113
>gi|340756654|ref|ZP_08693259.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251833917|gb|EES62480.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 182
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + + I N+ G+ D
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYI-IENVNSLGYED 91
>gi|302525045|ref|ZP_07277387.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
gi|302433940|gb|EFL05756.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
Length = 188
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA ++L + PKG RP E V+ A F+ L+ AG L R LDLY+G+
Sbjct: 1 MTRIVAGKAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELDGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG ++ FVE D
Sbjct: 55 GALGLEALSRGAADAWFVEAD 75
>gi|223937012|ref|ZP_03628920.1| Protein of unknown function methylase putative [bacterium Ellin514]
gi|223894293|gb|EEF60746.1| Protein of unknown function methylase putative [bacterium Ellin514]
Length = 198
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGKA + L PKG+DVRP ++VK A F+ L + + R L+L++GTG+
Sbjct: 1 MRITGGKATGRPLRVPKGLDVRPTPDLVKQAVFNSLGN------RVVGARVLELFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+ +E +SRG ++V VEM
Sbjct: 55 LSLECLSRGAAQVVCVEM 72
>gi|373496651|ref|ZP_09587197.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
gi|371965540|gb|EHO83040.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
Length = 182
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + + I N+ G+ D
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYI-IENVNTLGYED 91
>gi|291277312|ref|YP_003517084.1| DNA methylase [Helicobacter mustelae 12198]
gi|290964506|emb|CBG40358.1| possible DNA methylase [Helicobacter mustelae 12198]
Length = 217
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
K E+ ++V+GG + LL P R ++K + F+ LQ+ +
Sbjct: 6 KKNEQNAKKSTIKVIGGMFKGHSLLMPHSHTTRSSKSILKESLFNTLQN------DILSF 59
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
++++++GTGS+GIEA+SRG V F E DP + +L N+E
Sbjct: 60 SFVEIFAGTGSIGIEALSRGAKSVIFFEKDPEAFA-ILRKNIE 101
>gi|330991269|ref|ZP_08315220.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
gi|329761288|gb|EGG77781.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
Length = 191
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA--GGCPASLRPGRWLDLYSGT 166
++++ G+ R + L +P G RP + V+ A FD L A G +LR R LD ++GT
Sbjct: 1 MRIIAGECRGRTLHAPAGQTTRPTADRVRQALFDTLAHAPWAGLD-TLRGARVLDGFAGT 59
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG + FVE D
Sbjct: 60 GALGLEALSRGAASACFVERD 80
>gi|312113042|ref|YP_004010638.1| methyltransferase [Rhodomicrobium vannielii ATCC 17100]
gi|311218171|gb|ADP69539.1| methyltransferase [Rhodomicrobium vannielii ATCC 17100]
Length = 185
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + + +P G RP + V+ + F+IL P L R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRGIAAPDGTTTRPTSDRVRESLFNILVHGIDGP-PLEGARVLDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + FVE D + N+E G S +
Sbjct: 60 LGLEALSRGAAYCLFVE-DEAAARGAIRENIEALGLTGASKL 100
>gi|163840525|ref|YP_001624930.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162954001|gb|ABY23516.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 194
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A + L+S G RP + VK A F L++ G L+ + LDLY+G+G++
Sbjct: 3 RIIAGAAGGQTLVSVPGTGTRPTTDRVKEALFSRLEAMG----VLKESKVLDLYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS---IHTVRVETFLERAE 223
G+E+ SRG ++V VE+D + V N + + + ++ +VE FL+RA+
Sbjct: 59 GLESASRGAAKVDLVELDARAAA-VCQRNADLVNSVTAAGTVRVNRAKVEQFLQRAK 114
>gi|75676733|ref|YP_319154.1| hypothetical protein Nwi_2549 [Nitrobacter winogradskyi Nb-255]
gi|74421603|gb|ABA05802.1| Conserved hypothetical protein 95 [Nitrobacter winogradskyi Nb-255]
Length = 184
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVA--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAKFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|320108617|ref|YP_004184207.1| methyltransferase [Terriglobus saanensis SP1PR4]
gi|319927138|gb|ADV84213.1| methyltransferase [Terriglobus saanensis SP1PR4]
Length = 201
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG--RWLDLYSGT 166
++V+ G R + L++P G RP + ++ F++L +LR R+ DLY+GT
Sbjct: 4 VRVIAGTYRSRPLVAPPGTATRPTSDRLRETLFNVL--------ALRIAGTRFADLYAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G+VGIEAISRG V F E + ++ +
Sbjct: 56 GAVGIEAISRGAEHVFFSETNAKALTAI 83
>gi|392940862|ref|ZP_10306506.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
gi|392292612|gb|EIW01056.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
Length = 184
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|260890394|ref|ZP_05901657.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
gi|260860014|gb|EEX74514.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
Length = 184
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGTLKNRRIKSREGRETRPTLERIKEAIFSII------GEKVVDAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
V EA+SRG +E D + ++I N+ G
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLG 88
>gi|326389527|ref|ZP_08211094.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
gi|325994532|gb|EGD52957.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
Length = 184
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|310779235|ref|YP_003967568.1| methyltransferase [Ilyobacter polytropus DSM 2926]
gi|309748558|gb|ADO83220.1| methyltransferase [Ilyobacter polytropus DSM 2926]
Length = 182
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K + KG + RP ++ VK A F +Q + LDL+SGTG+
Sbjct: 1 MRIIAGTAKNKSIKCRKGTETRPTLDRVKEALFSKIQ------PYVEDCSILDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+ +EAISRG +E D + V+I N+ GF
Sbjct: 55 IALEAISRGAKRAIMIEKDQEALK-VIIENVNSLGF 89
>gi|118590703|ref|ZP_01548104.1| hypothetical protein SIAM614_06033 [Stappia aggregata IAM 12614]
gi|118436679|gb|EAV43319.1| hypothetical protein SIAM614_06033 [Stappia aggregata IAM 12614]
Length = 185
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L +PK D RP + ++ F+IL A G L R LDL++GTG+
Sbjct: 1 MRIVAGRFKGTALAAPKSHDTRPTSDRLRETIFNIL--AHGLDVDLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G EAISRG F+E + ++ N+E G + I
Sbjct: 59 LGFEAISRGARHCTFIE-EGAEARGIIRRNMETLGLNGAAKI 99
>gi|444311918|ref|ZP_21147518.1| putative methyltransferase [Ochrobactrum intermedium M86]
gi|443484848|gb|ELT47650.1| putative methyltransferase [Ochrobactrum intermedium M86]
Length = 187
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKLRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|392411933|ref|YP_006448540.1| RNA methyltransferase, RsmD family [Desulfomonile tiedjei DSM 6799]
gi|390625069|gb|AFM26276.1| RNA methyltransferase, RsmD family [Desulfomonile tiedjei DSM 6799]
Length = 186
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + +L+SP+ VRP ++ V+ A F L A + R LDL++GTG+
Sbjct: 1 MRIIAGRFKGLRLVSPRIKGVRPTLDRVREALFSTLGPA------VEGSRILDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G EA+SRG V FV+ D V+ L N E G I V T L+R Q
Sbjct: 55 FGFEALSRGAQYVTFVDKDRR-VAETLKANTESLGLGHQIRIINADVPTALKRLVQ 109
>gi|291536223|emb|CBL09335.1| RNA methyltransferase, RsmD family [Roseburia intestinalis M50/1]
Length = 188
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME 112
>gi|257413345|ref|ZP_04742727.2| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
gi|257203918|gb|EEV02203.1| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
Length = 188
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME 112
>gi|323142410|ref|ZP_08077236.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413103|gb|EFY03996.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 198
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + ++++ GKAR +L PK DVRP + VK + F+I+ S + LDL+
Sbjct: 9 TEEQYMRIITGKARGLQLTVPKTYDVRPTADRVKESVFNIIGS------KIIGAEVLDLF 62
Query: 164 SGTGSVGIEAISRGCSEVHFVE 185
+GTG++G+E+ SRG + V F++
Sbjct: 63 AGTGNLGLESWSRGAAAVTFID 84
>gi|290968705|ref|ZP_06560243.1| RNA methyltransferase, RsmD family [Megasphaera genomosp. type_1
str. 28L]
gi|335049675|ref|ZP_08542662.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 199-6]
gi|290781358|gb|EFD93948.1| RNA methyltransferase, RsmD family [Megasphaera genomosp. type_1
str. 28L]
gi|333762410|gb|EGL39908.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 199-6]
Length = 195
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +P G RP ++ + + F+IL + SLR LD+++GTG+
Sbjct: 12 VRIIAGSVRGRKLKTPSGRLTRPTLDRTRESVFNILAAT-----SLRGASVLDVFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG F++ +L N+E GF
Sbjct: 67 LGLEALSRGAVSCVFIDQ---ATQELLRKNIEVCGF 99
>gi|288958821|ref|YP_003449162.1| N6-adenine-specific methylase [Azospirillum sp. B510]
gi|288911129|dbj|BAI72618.1| N6-adenine-specific methylase [Azospirillum sp. B510]
Length = 186
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P G D RP + + A F+IL A P +D + GTG+
Sbjct: 1 MRIVGGKHRGRALVAPDGRDTRPTTDRTRQAIFNILAHADWAP-EFEGVAVVDAFCGTGA 59
Query: 169 VGIEAISRGCSEVHFVEM 186
+G+EA+SRG S F++M
Sbjct: 60 LGLEALSRGASWCGFLDM 77
>gi|198284461|ref|YP_002220782.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667593|ref|YP_002427128.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|416002963|ref|ZP_11560870.1| methyltransferase, putative [Acidithiobacillus sp. GGI-221]
gi|198248982|gb|ACH84575.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519806|gb|ACK80392.1| methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339836159|gb|EGQ63771.1| methyltransferase, putative [Acidithiobacillus sp. GGI-221]
Length = 189
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
+ ++ G+ R ++LL+P G +RP V+ F+ L Q AG R LDL++G+
Sbjct: 3 ISIIAGRHRGRRLLTPAGRTLRPTPGAVRERLFNWLEGQVAGA--------RVLDLFAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDP 188
G++G+EA SRG EV FVE DP
Sbjct: 55 GALGLEAWSRGAREVVFVERDP 76
>gi|119356843|ref|YP_911487.1| hypothetical protein Cpha266_1016 [Chlorobium phaeobacteroides DSM
266]
gi|119354192|gb|ABL65063.1| conserved hypothetical protein 95 [Chlorobium phaeobacteroides DSM
266]
Length = 178
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ GK + K+ + VRP VK + FD L + S+ LDL++G GS
Sbjct: 1 MQIIAGKYKGNKIRRTDTLAVRPCSSRVKKSLFDTLSARMDFEGSI----VLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF 225
+G EA+SRG V+FV+ + ++ L G D SSI V FL+R EQF
Sbjct: 57 LGFEALSRGSEFVYFVDQHTDALKSMKSTALHL-GVTDKSSIVNSDVTAFLDRTTEQF 113
>gi|257125253|ref|YP_003163367.1| methyltransferase [Leptotrichia buccalis C-1013-b]
gi|257049192|gb|ACV38376.1| methyltransferase [Leptotrichia buccalis C-1013-b]
Length = 184
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGVLKNRRIKSREGRETRPTLERIKEAIFSIIGE------KVADAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
V EA+SRG +E D + ++I N+ G
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLGI 89
>gi|296270744|ref|YP_003653376.1| methyltransferase [Thermobispora bispora DSM 43833]
gi|296093531|gb|ADG89483.1| methyltransferase [Thermobispora bispora DSM 43833]
Length = 189
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A+ ++L P G D RP + + F + S G +L R LDLY+G+G
Sbjct: 1 MTRVIAGLAKGRRLTVPPGKDTRPTSDRAREGLFATVLSVLG---TLEGVRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+VG+EA+SRG V VE DP + + N+E G L + + +VE + R
Sbjct: 58 AVGLEALSRGAEHVLLVEADP-RAARAIRANIEAVG-LPGAVLRQEKVERLVRR 109
>gi|117924733|ref|YP_865350.1| methyltransferase [Magnetococcus marinus MC-1]
gi|117608489|gb|ABK43944.1| putative methyltransferase [Magnetococcus marinus MC-1]
Length = 195
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGT 166
+L++ GG+ R + L +PK VRP + + A F+ILQ GC RWL+LY+G+
Sbjct: 1 MLKLTGGQWRGRALETPKDQQVRPTTVMAREALFNILQQEVVGC-------RWLELYAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDP 188
G + +EA+SRG +E P
Sbjct: 54 GIMALEALSRGAHSAVLMERAP 75
>gi|421597589|ref|ZP_16041175.1| hypothetical protein BCCGELA001_09331, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404270302|gb|EJZ34396.1| hypothetical protein BCCGELA001_09331, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 160
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IVDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRNNVESLGLGGVTKVY 100
>gi|349686310|ref|ZP_08897452.1| N6-adenine-specific methylase [Gluconacetobacter oboediens 174Bp2]
Length = 191
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA-SLRPGRWLDLYSGTG 167
++++ G R + L +P G RP + V+ A FD L A A ++R R +D ++GTG
Sbjct: 1 MRIIAGDCRGRTLRAPPGQTTRPTADRVRQALFDTLAHAPWAGADTMRGARVMDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + FVE D
Sbjct: 61 ALGLEALSRGAASAVFVERD 80
>gi|340750024|ref|ZP_08686871.1| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
gi|340562526|gb|EEO34715.2| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
Length = 182
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MRIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EA+SRG +E D + + I N+ G+ D
Sbjct: 55 ISLEALSRGAKRAVMIEKDAEALKYI-IENVNNLGYED 91
>gi|383828552|ref|ZP_09983641.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
gi|383461205|gb|EID53295.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
Length = 185
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F+ L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRVLRVPPKG--TRPTTELVREALFNALEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG E FVE D
Sbjct: 55 GALGLEALSRGAREAVFVEAD 75
>gi|345017794|ref|YP_004820147.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033137|gb|AEM78863.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 184
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLDGSEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG +FV+
Sbjct: 55 IGIEALSRGAQFCYFVD 71
>gi|452819936|gb|EME26986.1| putative N6-adenine-specific methylase [Galdieria sulphuraria]
Length = 329
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
L V G + ++LL+P + +RPMM V+ A F +L LRP R LD+++GTG
Sbjct: 97 LYVNAGSVKGRRLLNPP-VYIRPMMSKVRSALFCMLTDM----KLLRPEYRILDIFAGTG 151
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+VGIEA+S+ + FV+ P + V NLE F D E F++ +F
Sbjct: 152 AVGIEALSQNVGKAVFVDSSPDCCATVR-ENLERCRFSDRGDAFCSTYEDFVDNPGRF 208
>gi|58579464|ref|YP_197676.1| methylase [Ehrlichia ruminantium str. Welgevonden]
gi|58418090|emb|CAI27294.1| Putative Methylase [Ehrlichia ruminantium str. Welgevonden]
Length = 194
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S+ EA+SRG + V+++ +
Sbjct: 57 SLSFEALSRGAASSLLVDINHY 78
>gi|300024101|ref|YP_003756712.1| methyltransferase [Hyphomicrobium denitrificans ATCC 51888]
gi|299525922|gb|ADJ24391.1| methyltransferase [Hyphomicrobium denitrificans ATCC 51888]
Length = 185
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L++P M +RP + V+ + F+IL G +L R +DL++GTG+
Sbjct: 1 MRVVAGRFRGRALVAPDDMGIRPTSDRVRESVFNILMH-GIEDFTLAGARVIDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + FVE
Sbjct: 60 LGIEAVSRGAAFCLFVE 76
>gi|150016043|ref|YP_001308297.1| methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149902508|gb|ABR33341.1| putative methyltransferase [Clostridium beijerinckii NCIMB 8052]
Length = 185
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +Q P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSSVQMY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+G+EA SRG SEV+ + V +L N+E F D
Sbjct: 55 LGLEAASRGASEVYLFDKSS-VTFPLLKENVESLKFQD 91
>gi|367470557|ref|ZP_09470252.1| Ribosomal RNA small subunit methyltransferase D [Patulibacter sp.
I11]
gi|365814364|gb|EHN09567.1| Ribosomal RNA small subunit methyltransferase D [Patulibacter sp.
I11]
Length = 179
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L +P G RP + V+ A F IL G LDL++G+G+
Sbjct: 1 MRVIAGRFGGRRLAAPPGTGTRPTADRVREALFSILGPPTGAAV-------LDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+G+EA+SRG + V FVE D + VL NL+ G
Sbjct: 54 LGLEALSRGAASVTFVERD-RRAAGVLRENLQALG 87
>gi|291533323|emb|CBL06436.1| RNA methyltransferase, RsmD family [Megamonas hypermegale ART12/1]
Length = 190
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTG+
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+ +EA+SRG + V+ +S + N T +D S+I
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI 95
>gi|284045152|ref|YP_003395492.1| methyltransferase [Conexibacter woesei DSM 14684]
gi|283949373|gb|ADB52117.1| methyltransferase [Conexibacter woesei DSM 14684]
Length = 180
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G ++LL+PKG RP + V+ A F IL G R LDL++G+G+
Sbjct: 1 MRIVAGLYGGRRLLAPKGDATRPTSDRVREALFSILGPLDGL-------RVLDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+G+EA+SRG + V FV+ D + NLE G
Sbjct: 54 LGLEALSRGAAHVTFVD-DANAAVRAIEANLEALG 87
>gi|406910046|gb|EKD50158.1| hypothetical protein ACD_62C00626G0003 [uncultured bacterium]
Length = 188
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +K+L+PKG RP + V+ A F L + ++D+++G GS
Sbjct: 1 MRIIAGTKKNQKILTPKGTITRPALAQVREAIFSSLGNVDDL-------VFMDIFAGCGS 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SR +FV+ P ++ +I NLE F + + +
Sbjct: 54 LGLEALSRNACYCYFVDNHPLALT-CIINNLERLSFQNKAHV 94
>gi|57239485|ref|YP_180621.1| methylase [Ehrlichia ruminantium str. Welgevonden]
gi|57161564|emb|CAH58492.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 194
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S+ EA+SRG + V+++ +
Sbjct: 57 SLSFEALSRGAASSLLVDINHY 78
>gi|338811257|ref|ZP_08623482.1| methyltransferase [Acetonema longum DSM 6540]
gi|337276726|gb|EGO65138.1| methyltransferase [Acetonema longum DSM 6540]
Length = 184
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L +P+GM +RP + VK + F IL + + LDL+SGTG+
Sbjct: 1 MRVITGTAKGTILKAPEGMAIRPTTDRVKESVFAILGE------RIVNAKVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP-NLEWT 202
+GIE++SRG +V FV D VS LI NL+ T
Sbjct: 55 LGIESLSRGAQQVVFV--DQSAVSLRLIKENLQRT 87
>gi|392426885|ref|YP_006467879.1| RNA methyltransferase, RsmD family [Desulfosporosinus acidiphilus
SJ4]
gi|391356848|gb|AFM42547.1| RNA methyltransferase, RsmD family [Desulfosporosinus acidiphilus
SJ4]
Length = 186
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L + +GM RP + VKGA F++L ++ R LDL+SGTG+
Sbjct: 1 MRIIAGEMRGRILKAVEGMMTRPTSDKVKGAIFNVLGD------RVQDARVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+ EA+SRG E VE NV+ N++ G + + V +LE
Sbjct: 55 LAFEALSRGAREAVLVE-KSHNAHNVIRENMDRLGIGSKTKVLLVDAFKYLE 105
>gi|418472121|ref|ZP_13041891.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
gi|371547281|gb|EHN75671.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
Length = 195
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG V VE D
Sbjct: 59 AVGLEALSRGAGHVLLVEAD 78
>gi|206889225|ref|YP_002248645.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741163|gb|ACI20220.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 171
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
VRP +V+ A FDIL+ + ++DLY+G G VG+EA+ RG +EV FVE DP
Sbjct: 12 VRPTPAIVRKAIFDILRD-------VEDKIFIDLYAGKGFVGVEALKRGANEVIFVEKDP 64
Query: 189 WVVSNVLIPN-LEWTGFLDVSSIHTVRVETFLE 220
V + I N L+ D + ++ + +FL+
Sbjct: 65 --VLCIFIKNSLQKKKLSDKARVYNMDAVSFLQ 95
>gi|228476280|ref|ZP_04060982.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|314936688|ref|ZP_07844035.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|418620386|ref|ZP_13183190.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
gi|228269683|gb|EEK11185.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|313655307|gb|EFS19052.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|374822516|gb|EHR86536.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
Length = 183
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKPLESLEGRNTRPTMDKVKEGIFNSLHEVYGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL+ + S ++
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIQANLKQLNLEEQSEVY 94
>gi|384412021|ref|YP_005621386.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932395|gb|AEH62935.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 183
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSLESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+G+E++SRG + FVE DP +L N+E G
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMG 91
>gi|406832532|ref|ZP_11092126.1| methyltransferase [Schlesneria paludicola DSM 18645]
Length = 206
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G+ RR+ LL+ G RP+++ K FD ++ PG + LD+YSGTG
Sbjct: 1 MRIIAGQFRRRTLLTNPGQTTRPIIDRAKVMLFDHIRHR-------MPGSKVLDIYSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+G EA+SRG V F E D
Sbjct: 54 SLGFEALSRGAKSVVFCEQD 73
>gi|402772795|ref|YP_006592332.1| methyltransferase [Methylocystis sp. SC2]
gi|401774815|emb|CCJ07681.1| Methyltransferase [Methylocystis sp. SC2]
Length = 185
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L P+ +RP E ++ + FDIL G P + +DL++G G+
Sbjct: 1 MRIVGGALRGRALSGPRSQAIRPTSERLRESVFDILAHRFGDPVT--GAHVVDLFAGAGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + FV+ D +L N+E G V+ I
Sbjct: 59 LGLEAVSRGAARALFVD-DGAEARALLRANIEALGLGGVTRI 99
>gi|145593832|ref|YP_001158129.1| putative methyltransferase [Salinispora tropica CNB-440]
gi|145303169|gb|ABP53751.1| putative methyltransferase [Salinispora tropica CNB-440]
Length = 187
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A A L R+ DLY+G+G
Sbjct: 1 MTRIVAGALGGRRITAPPGAGTRPTSDRVREALFSALQAA----ADLDGVRFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG + V VE +P
Sbjct: 57 AVGLEALSRGAAHVLLVESNP 77
>gi|159036817|ref|YP_001536070.1| putative methyltransferase [Salinispora arenicola CNS-205]
gi|157915652|gb|ABV97079.1| putative methyltransferase [Salinispora arenicola CNS-205]
Length = 187
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGTGTRPTSDRVREALFSALQTA----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG + V VE +P
Sbjct: 57 AVGLEALSRGATHVLLVESNP 77
>gi|284048740|ref|YP_003399079.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
gi|283952961|gb|ADB47764.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
Length = 184
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL++PK VRP + VK A F+I+QS P S LD ++GTG+
Sbjct: 1 MRIITGKARGLKLVTPKNYLVRPTADRVKEALFNIIQSR--IPGSTV----LDAFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA SRG +V + +
Sbjct: 55 LGLEAWSRGAEQVVYFD 71
>gi|402496529|ref|YP_006555789.1| N6-adenine-specific methylase [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649802|emb|CCF77972.1| N6-adenine-specific methylase [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 182
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ + K + VRP M VV+ A F+IL S + LDL+ G+G
Sbjct: 1 MLRIIAGKYRGRKIATGKHLAVRPTMSVVREAIFNILSS----KKPIYNLNVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S EA+SRG V+ D +
Sbjct: 57 SFSFEALSRGAKHAFMVDSDYY 78
>gi|154499927|ref|ZP_02037965.1| hypothetical protein BACCAP_03584 [Bacteroides capillosus ATCC
29799]
gi|150271525|gb|EDM98782.1| RNA methyltransferase, RsmD family [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 181
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L GM+ RP + VK + F+I+Q + LDL+ GTG
Sbjct: 1 MRVITGTARGRRLKELPGMETRPTTDKVKESIFNIVQF------DVEGRNVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEA+SRG FV++ + V+ N+++ GF
Sbjct: 55 LGIEALSRGAERCTFVDLRKEAAA-VIRENVKFCGF 89
>gi|300088242|ref|YP_003758764.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527975|gb|ADJ26443.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 188
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G + + + P RP E+V+GA F +L A+L W LDL+SG
Sbjct: 4 MRIIAGDCKGRPIKVPDRKSTRPATELVRGAIFSML-------ANLTED-WDEVLDLFSG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
+GS+GIEA+SRG V FVE +++ NL G + + +H V VE
Sbjct: 56 SGSLGIEALSRGAGHVDFVEQGR-DCCDIIRANLRACGVEESARVHCVPVE 105
>gi|56551471|ref|YP_162310.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752917|ref|YP_003225810.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|56543045|gb|AAV89199.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552280|gb|ACV75226.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 183
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSFESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+G+E++SRG + FVE DP +L N+E G
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMG 91
>gi|406673212|ref|ZP_11080436.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
gi|405586674|gb|EKB60424.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
Length = 191
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G+ + K++ +PK VRP + K A F IL + +S LDL+SG GS+
Sbjct: 6 RIISGQWKAKRISAPKHFTVRPTTDFAKEALFSILDNRYALASS----SVLDLFSGIGSI 61
Query: 170 GIEAISRGCSEVHFVEMD 187
+E SRGC ++ VEM+
Sbjct: 62 TLEFASRGCQDIQSVEMN 79
>gi|239833549|ref|ZP_04681877.1| methyltransferase [Ochrobactrum intermedium LMG 3301]
gi|239821612|gb|EEQ93181.1| methyltransferase [Ochrobactrum intermedium LMG 3301]
Length = 195
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 9 VRIVGGKLRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 67 LGLEALSRGARYATFVE 83
>gi|359408123|ref|ZP_09200595.1| RNA methyltransferase, RsmD family [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676880|gb|EHI49229.1| RNA methyltransferase, RsmD family [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 186
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++GG+ R KL + VRP + + A F+IL G S+ +DL++GTG+
Sbjct: 1 MNIIGGEKRGAKLAACNSAAVRPTGQRTREALFNILHG-GRFAVSVNSAVIIDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + F+E D
Sbjct: 60 IGLEALSRGAQKALFIEQD 78
>gi|343521011|ref|ZP_08757979.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396217|gb|EGV08754.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 180
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL L DL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPVDYSVRPTTDKIKESIFNILFEIDYNSIVL------DLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIE +SRG +V+F + + NLE + FLD S I
Sbjct: 55 IGIEFLSRGAKKVYFCDFSEDSLKTTK-KNLENSEFLDKSII 95
>gi|374292388|ref|YP_005039423.1| putative methyltransferase [Azospirillum lipoferum 4B]
gi|357424327|emb|CBS87194.1| putative methyltransferase [Azospirillum lipoferum 4B]
Length = 195
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P G D RP + + A F+IL A P +D + GTG+
Sbjct: 10 VRIVGGKHRGRSLVAPGGRDTRPTTDRTRQAIFNILAHANWAP-EFEGAAVVDAFCGTGA 68
Query: 169 VGIEAISRGCSEVHFVEM 186
+G+EA+SRG + F++M
Sbjct: 69 LGLEALSRGAAWCGFLDM 86
>gi|223043823|ref|ZP_03613865.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|417907606|ref|ZP_12551377.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
gi|222442727|gb|EEE48830.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|341595635|gb|EGS38278.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
Length = 180
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMPQAEVY 94
>gi|58617518|ref|YP_196717.1| methylase [Ehrlichia ruminantium str. Gardel]
gi|58417130|emb|CAI28243.1| Putative Methylase [Ehrlichia ruminantium str. Gardel]
Length = 194
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S+ EA+SRG + ++++ +
Sbjct: 57 SLSFEALSRGAASSLLIDINHY 78
>gi|384099123|ref|ZP_10000224.1| methyltransferase [Imtechella halotolerans K1]
gi|383834069|gb|EID73518.1| methyltransferase [Imtechella halotolerans K1]
Length = 183
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L +PK + VRP + K A F+IL + LDL++GTG+
Sbjct: 1 MRIISGKYKSKRLTAPKKLPVRPTTDFAKEALFNILNND----FYFDDITVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEV 181
+ E SRGCS++
Sbjct: 57 ISFEFASRGCSDI 69
>gi|302389604|ref|YP_003825425.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
gi|302200232|gb|ADL07802.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
Length = 184
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 10/79 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V GG R +++ S G+ RP ++V+ + F+IL ++AG +LD+++GT
Sbjct: 1 MRVTGGIFRGRRIKSLPGIKTRPTSDIVRESLFNILGEKTAGSS--------FLDVFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVE 185
GSVGIEA+SRG V F+E
Sbjct: 53 GSVGIEALSRGAERVVFIE 71
>gi|403378859|ref|ZP_10920916.1| N6-adenine-specific methylase [Paenibacillus sp. JC66]
Length = 190
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + G RP + VK A F IL L+ G LDL++GTG
Sbjct: 1 MRVISGTARGRPLKAVPGEGTRPTTDKVKEAVFSILNP------YLQGGWVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG F++++ V V+ N++ GF + + ++
Sbjct: 55 LGIEALSRGMDHAVFIDLERKSV-EVIRHNIDTAGFREQAEVY 96
>gi|384547307|ref|YP_005736560.1| methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|416839760|ref|ZP_11903118.1| methyltransferase [Staphylococcus aureus O11]
gi|416847343|ref|ZP_11907077.1| methyltransferase [Staphylococcus aureus O46]
gi|417895756|ref|ZP_12539734.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
gi|298694356|gb|ADI97578.1| probable methyltransferase [Staphylococcus aureus subsp. aureus
ED133]
gi|323440672|gb|EGA98382.1| methyltransferase [Staphylococcus aureus O11]
gi|323442385|gb|EGB00015.1| methyltransferase [Staphylococcus aureus O46]
gi|341841433|gb|EGS82894.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
Length = 180
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLE 200
+GIEA+SRG +V FV+ + V SN+ +LE
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVKVIKSNIANLDLE 88
>gi|153010360|ref|YP_001371574.1| putative methyltransferase [Ochrobactrum anthropi ATCC 49188]
gi|151562248|gb|ABS15745.1| putative methyltransferase [Ochrobactrum anthropi ATCC 49188]
Length = 187
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPNKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|325678315|ref|ZP_08157941.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
gi|324109995|gb|EGC04185.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
Length = 182
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + + +D RP ++VK A F +Q + + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLEALDTRPTTDMVKEAVFSAIQF------DVAGSQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QF 225
+GIEA+SR S FV+ +P V V+ N+ F+ S + + +L+ A+ QF
Sbjct: 55 MGIEALSRDASHCVFVDNNPAAV-QVIKENISDCKFVTESRVLNMDSLDYLKVAKGQF 111
>gi|229820096|ref|YP_002881622.1| methyltransferase [Beutenbergia cavernae DSM 12333]
gi|229566009|gb|ACQ79860.1| methyltransferase [Beutenbergia cavernae DSM 12333]
Length = 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR + L P RP + V+ A F L++ G + R LDLY+G+G
Sbjct: 1 MTRIVAGSARGRTLAVPAA-GTRPTTDRVREAVFSALEARG----QVADARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++G+EA SRG V VE D + + N + G V S+ RVE L R
Sbjct: 56 ALGLEAASRGAQSVLLVESDRRAAA-ICRRNADTLGLSGVVSVRAARVEQLLRR 108
>gi|404320098|ref|ZP_10968031.1| putative methyltransferase [Ochrobactrum anthropi CTS-325]
Length = 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|85717174|ref|ZP_01048132.1| hypothetical protein NB311A_14632 [Nitrobacter sp. Nb-311A]
gi|85696007|gb|EAQ33907.1| hypothetical protein NB311A_14632 [Nitrobacter sp. Nb-311A]
Length = 184
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAKFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|78187053|ref|YP_375096.1| hypothetical protein Plut_1191 [Chlorobium luteolum DSM 273]
gi|78166955|gb|ABB24053.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 178
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS----AGGCPASLRPGRWLDLYS 164
+Q++ G+ R +++ + DVRP VK + FDIL S G C LDL++
Sbjct: 1 MQIIAGRYRGRRITTAPLQDVRPCSSRVKKSIFDILHSRMDFEGSCV--------LDLFA 52
Query: 165 GTGSVGIEAISRGCSEVHFVEMDP 188
G GS+G E +SRG S V FV+ P
Sbjct: 53 GFGSLGFETLSRGASRVTFVDRHP 76
>gi|223984420|ref|ZP_03634558.1| hypothetical protein HOLDEFILI_01852 [Holdemania filiformis DSM
12042]
gi|223963615|gb|EEF67989.1| hypothetical protein HOLDEFILI_01852 [Holdemania filiformis DSM
12042]
Length = 241
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + ++++ GK R + + +PKG RP ++ VK A F + G LDL+
Sbjct: 51 TRSKKMRIVAGKFRSRLIQAPKGDQTRPTLDKVKEAVFSRI------GPYFDGGVMLDLF 104
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+GS+G+EA+SRG V+FV+ P + +
Sbjct: 105 AGSGSMGLEALSRGIEHVYFVDRSPAAAAVI 135
>gi|49483286|ref|YP_040510.1| methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282903672|ref|ZP_06311560.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|282905441|ref|ZP_06313296.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908413|ref|ZP_06316244.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|283957867|ref|ZP_06375318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295427611|ref|ZP_06820243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591435|ref|ZP_06950073.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|415684403|ref|ZP_11449532.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|418566384|ref|ZP_13130765.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|418581759|ref|ZP_13145839.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418595224|ref|ZP_13158845.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|418602345|ref|ZP_13165751.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|418891675|ref|ZP_13445792.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418897449|ref|ZP_13451522.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900337|ref|ZP_13454395.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908830|ref|ZP_13462835.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|418916914|ref|ZP_13470873.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922701|ref|ZP_13476618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982033|ref|ZP_13529742.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985493|ref|ZP_13533181.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49241415|emb|CAG40099.1| putative methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282328078|gb|EFB58360.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330733|gb|EFB60247.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595290|gb|EFC00254.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|283790016|gb|EFC28833.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295127969|gb|EFG57603.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576321|gb|EFH95037.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|315193792|gb|EFU24187.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|371970597|gb|EHO88014.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|374396045|gb|EHQ67296.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|374402091|gb|EHQ73134.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|377704064|gb|EHT28375.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377705296|gb|EHT29603.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377706553|gb|EHT30849.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377711309|gb|EHT35542.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377732632|gb|EHT56683.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377736024|gb|EHT60054.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377750088|gb|EHT74026.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377754826|gb|EHT78732.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|377762228|gb|EHT86097.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGIDKVIFVDQN 71
>gi|385814060|ref|YP_005850453.1| RsmD family RNA methyltransferase [Lactobacillus helveticus H10]
gi|323466779|gb|ADX70466.1| RNA methyltransferase, RsmD family [Lactobacillus helveticus H10]
Length = 182
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET----FLERAEQ 224
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R T F E E+
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNTALKLFAENQEK 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|289551063|ref|YP_003471967.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|385784684|ref|YP_005760857.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|418414359|ref|ZP_12987574.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418637514|ref|ZP_13199833.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|289180595|gb|ADC87840.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|339894940|emb|CCB54244.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|374838760|gb|EHS02295.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|410876966|gb|EKS24863.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 183
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIE +SRG +V FV+ + + V+ NL+ + + ++
Sbjct: 53 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVY 94
>gi|119953003|ref|YP_945212.1| methyltransferase [Borrelia turicatae 91E135]
gi|119861774|gb|AAX17542.1| methyltransferase [Borrelia turicatae 91E135]
Length = 181
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + K+ PK VRP+M +V+ A F I + + +LD+++GTG
Sbjct: 1 MHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIFLN------QILGSNFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG + H V+ + + NVLI N E + + E FL++++ F
Sbjct: 55 MSLEALSRGANLAHLVDCNKF-SKNVLIKNFEVVS--EPYKFFFRKAELFLKKSDLF 108
>gi|374582926|ref|ZP_09656020.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
gi|374419008|gb|EHQ91443.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
Length = 183
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +GM RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGMHTRPTSDKVKGAIFNVLGD------KVLDSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+ IEA+SRG E VE
Sbjct: 55 LAIEALSRGSCEAVLVE 71
>gi|406971318|gb|EKD95432.1| methyltransferase [uncultured bacterium]
Length = 201
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V G A+ KL +P+ R + ++VK + F IL ++ LDLY+G+GS
Sbjct: 4 IRVTSGTAKNTKLNTPQTEGFRAVQDIVKQSVFSILGD------NVNDAVCLDLYAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG FV+ D V++ NL F + + F+E+
Sbjct: 58 LGIEALSRGAKWCDFVDKDHE-AKKVILENLVRCKFENNYEVFNKNAVKFVEK 109
>gi|404368530|ref|ZP_10973880.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
gi|313687825|gb|EFS24660.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
Length = 182
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 10/90 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNV 194
+ +EA+SRG +E D +++ NV
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYIIENV 84
>gi|329936747|ref|ZP_08286454.1| DNA methylase [Streptomyces griseoaurantiacus M045]
gi|329303977|gb|EGG47860.1| DNA methylase [Streptomyces griseoaurantiacus M045]
Length = 195
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A+ ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGRAKGRRLSVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG V VE D
Sbjct: 59 AVGLEALSRGAGHVLLVEAD 78
>gi|313207370|ref|YP_004046547.1| hypothetical protein Riean_1888 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484737|ref|YP_005393649.1| hypothetical protein RA0C_0087 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320629|ref|YP_006016791.1| N6-adenine-specific methylase [Riemerella anatipestifer RA-GD]
gi|407452916|ref|YP_006724641.1| hypothetical protein B739_2159 [Riemerella anatipestifer RA-CH-1]
gi|416110342|ref|ZP_11591957.1| putative methyltransferase [Riemerella anatipestifer RA-YM]
gi|442315361|ref|YP_007356664.1| hypothetical protein G148_1666 [Riemerella anatipestifer RA-CH-2]
gi|312446686|gb|ADQ83041.1| Conserved hypothetical protein CHP00095 [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315023265|gb|EFT36275.1| putative methyltransferase [Riemerella anatipestifer RA-YM]
gi|325335172|gb|ADZ11446.1| N6-adenine-specific methylase [Riemerella anatipestifer RA-GD]
gi|380459422|gb|AFD55106.1| hypothetical protein RA0C_0087 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|403313900|gb|AFR36741.1| hypothetical protein B739_2159 [Riemerella anatipestifer RA-CH-1]
gi|441484284|gb|AGC40970.1| hypothetical protein G148_1666 [Riemerella anatipestifer RA-CH-2]
Length = 186
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + K++L+PK +VRP + K A F IL+ P LDL++G G
Sbjct: 1 MYRIISGKWKAKRILAPKNFEVRPTTDFAKEALFSILEHRLELPYI----SALDLFAGIG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ +E SR C ++ VE +
Sbjct: 57 SISLELASRDCQDITSVEFN 76
>gi|258423833|ref|ZP_05686719.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|417891661|ref|ZP_12535718.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|418283095|ref|ZP_12895852.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|418306599|ref|ZP_12918378.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|418559124|ref|ZP_13123670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|418888915|ref|ZP_13443051.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993742|ref|ZP_13541379.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|257846065|gb|EEV70093.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|341850947|gb|EGS91876.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|365168692|gb|EHM60030.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|365246465|gb|EHM87015.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|371975415|gb|EHO92709.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|377746901|gb|EHT70871.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|377754425|gb|EHT78334.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+GIEA+SRG +V FV+ + V V+ NL
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNL 82
>gi|342214802|ref|ZP_08707475.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
gi|341590625|gb|EGS33862.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
Length = 181
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ + +PKGMD RP + V+ + +++QS G + LDL+SGTG+
Sbjct: 1 MRIISGTAKGHTIQAPKGMDTRPTQDRVRESICNVIQSRRG----FFEAQVLDLFSGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+ IE++SRG S H + +D V +
Sbjct: 57 LAIESLSRGAS--HAIAVDTRTVDCI 80
>gi|397676571|ref|YP_006518109.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397260|gb|AFN56587.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 183
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSLESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+G+E++SRG + FVE DP +L N+E G
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKGNIEKMG 91
>gi|418284861|ref|ZP_12897564.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|418925293|ref|ZP_13479196.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
gi|365172260|gb|EHM62987.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|377746588|gb|EHT70559.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+GIEA+SRG +V FV+ + V V+ NL
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNL 82
>gi|386859432|ref|YP_006272138.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
gi|384934313|gb|AFI30986.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
Length = 181
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 1 MRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QILGINFLDVFTGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S VH V+ + + NVLI N + + + E FL + + F
Sbjct: 55 MSLEALSRGASLVHLVDYNKF-SKNVLIKNFDIVN--EPYKFFFTKAEFFLAKRDLF 108
>gi|357392054|ref|YP_004906895.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
gi|311898531|dbj|BAJ30939.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
Length = 191
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G+A + L +P G + RP + + A F +++ G A R LDL++G+G+VG
Sbjct: 1 MIAGRAGGRPLAAPPGRNTRPTSDKAREAMFSTVEALSGPIAG---ARMLDLFAGSGAVG 57
Query: 171 IEAISRGCSEVHFVEMDPWVVSNV 194
+EA+SRG + VE DP V V
Sbjct: 58 LEALSRGAAHALLVESDPGAVRTV 81
>gi|429768918|ref|ZP_19301046.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta 470-4]
gi|429188269|gb|EKY29157.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta 470-4]
Length = 191
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + +++P+G + RP + + A F++L+ A L R +DLY+G+G+
Sbjct: 1 MRIVAGSLKGRAIVTPEGQNTRPTSDRARQAIFNVLEHAS-WAEGLHEARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EA+SRG + FV+ D + N++ G +H
Sbjct: 60 LGFEALSRGAAFCLFVDTDDG-ARGAIRENMDAYGLFGRCRVH 101
>gi|378835900|ref|YP_005205176.1| methyltransferase [Mycoplasma hyorhinis GDL-1]
gi|385858837|ref|YP_005905348.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis MCLD]
gi|330723926|gb|AEC46296.1| hypothetical Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis MCLD]
gi|367460685|gb|AEX14208.1| methyltransferase [Mycoplasma hyorhinis GDL-1]
Length = 183
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRTREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL 195
++GIEA+SRG E+ E+D V N++
Sbjct: 55 AIGIEALSRGAKELIASELDKKVFDNIV 82
>gi|328545046|ref|YP_004305155.1| methylase [Polymorphum gilvum SL003B-26A1]
gi|326414787|gb|ADZ71850.1| Putative methylase protein [Polymorphum gilvum SL003B-26A1]
Length = 184
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L +P+G RP + ++ + F+IL G L R LDL++GTG+
Sbjct: 1 MRIVAGRFKGAALAAPRGEATRPTSDRLRESVFNILVH--GLGVELDSARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G EAISRG FVE + V+ N+E G V+ I
Sbjct: 59 LGFEAISRGARHATFVE-EGVEARGVIRRNMETLGLNGVAKI 99
>gi|82750731|ref|YP_416472.1| methyltransferase [Staphylococcus aureus RF122]
gi|82656262|emb|CAI80676.1| probable methyltransferase [Staphylococcus aureus RF122]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGMDKVIFVDQN 71
>gi|386853613|ref|YP_006202898.1| hypothetical protein KK9_0208 [Borrelia garinii BgVir]
gi|365193647|gb|AEW68545.1| Hypothetical protein KK9_0208 [Borrelia garinii BgVir]
Length = 178
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 16/117 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + L+ N + V + + F +RAE F
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDF 101
>gi|384549883|ref|YP_005739135.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302332732|gb|ADL22925.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGMDKVIFVDQN 71
>gi|302558167|ref|ZP_07310509.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
gi|302475785|gb|EFL38878.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
Length = 195
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+VG+EA+SRG V VE D V V +V+S+ E +AEQ R
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAVRTVR---------ENVTSLGLPGAEVRSGKAEQIAR 109
>gi|379020830|ref|YP_005297492.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|418563180|ref|ZP_13127622.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|418949710|ref|ZP_13501943.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830139|gb|AEV78117.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|371971724|gb|EHO89120.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|375378242|gb|EHS81652.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+GIEA+SRG +V FV+ + V V+ NL
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNL 82
>gi|329113792|ref|ZP_08242563.1| Ribosomal RNA small subunit methyltransferase D [Acetobacter
pomorum DM001]
gi|326696802|gb|EGE48472.1| Ribosomal RNA small subunit methyltransferase D [Acetobacter
pomorum DM001]
Length = 194
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGT 166
+++++ G + + L +P G RP + V+ A FD+L A G P L LD ++GT
Sbjct: 1 MVRIIAGSRKGRLLTAPTGQTTRPTADRVRQALFDMLLHAPWGGPTLLSGAHVLDAFAGT 60
Query: 167 GSVGIEAISRGCSEVHFVE 185
G++G+EA+SRG S F E
Sbjct: 61 GALGLEALSRGASHATFFE 79
>gi|451948183|ref|YP_007468778.1| RNA methyltransferase, RsmD family [Desulfocapsa sulfexigens DSM
10523]
gi|451907531|gb|AGF79125.1| RNA methyltransferase, RsmD family [Desulfocapsa sulfexigens DSM
10523]
Length = 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 7/78 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G AR +KL +P + +RP + + A F I+ + + R LDLYSGTG
Sbjct: 1 MRIISGHARGRKLFTPGDSNLIRPTADRAREALFSIIGN------RILSARVLDLYSGTG 54
Query: 168 SVGIEAISRGCSEVHFVE 185
++GIE++SRG ++V FV+
Sbjct: 55 ALGIESLSRGATQVVFVD 72
>gi|317495523|ref|ZP_07953891.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
gi|316914337|gb|EFV35815.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
Length = 183
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG+
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLHC---------DGRILDLFGGTGA 51
Query: 169 VGIEAISRGCSEVHFVE 185
+GIE++SRG F++
Sbjct: 52 LGIESLSRGAEHAVFID 68
>gi|319954408|ref|YP_004165675.1| methyltransferase [Cellulophaga algicola DSM 14237]
gi|319423068|gb|ADV50177.1| methyltransferase [Cellulophaga algicola DSM 14237]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +KL +P + VRP ++ K F+IL + P LDL+SGTG+
Sbjct: 1 MRIISGKHRGRKLTAPSKLPVRPTTDMAKEGLFNILNNNYYLPDI----SVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVV 191
+ E SRGC ++ V+ D V
Sbjct: 57 IAFEFGSRGCDKITAVDADQGCV 79
>gi|405983295|ref|ZP_11041605.1| RsmD family RNA methyltransferase [Slackia piriformis YIT 12062]
gi|404389303|gb|EJZ84380.1| RsmD family RNA methyltransferase [Slackia piriformis YIT 12062]
Length = 191
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L +PKG + RP + VK + L SA G S LD ++G+G+
Sbjct: 1 MRVIAGLYKGRPLAAPKGSNTRPTTDRVKESLMSTLLSACG---SFDGAYVLDAFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209
+GIE ISRG + HF E D N L E G L +SS
Sbjct: 58 LGIECISRGAAAAHFFERD----RNALAALRENIGKLGISS 94
>gi|374851405|dbj|BAL54366.1| N6-adenine-specific methylase [uncultured Chloroflexi bacterium]
Length = 186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL G RP+ + VK A F+IL GG + W D+++GTG
Sbjct: 1 MRVISGSAKGRKLKPVPGDTTRPITDRVKEALFNIL---GG---DVIGSTWWDVFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
VGIEA+SRG F + P + + NLE TG + + +
Sbjct: 55 VGIEALSRGALFCRFTDAHPLAIRTIR-ANLEATGLAERAEV 95
>gi|417904138|ref|ZP_12547968.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
gi|341847961|gb|EGS89130.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGMDKVIFVDQN 71
>gi|187250722|ref|YP_001875204.1| putative methyltransferase [Elusimicrobium minutum Pei191]
gi|186970882|gb|ACC97867.1| Putative methyltransferase [Elusimicrobium minutum Pei191]
Length = 226
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 109 LQVLGGKARRKKLLS-PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G A+ +K+ S K M V P+ + +K + FDI++ PA +LDL++GTG
Sbjct: 1 MRIIAGTAKGRKIFSVSKKMAVVPISDRIKQSVFDIIRPK--IPACY----FLDLFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+V +EA+SRG ++ ++ + V N+ NLE GF D
Sbjct: 55 NVSLEALSRGAAKAVMLDKEVACVKNIK-RNLEHLGFAD 92
>gi|15924114|ref|NP_371648.1| methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926708|ref|NP_374241.1| hypothetical protein SA0972 [Staphylococcus aureus subsp. aureus
N315]
gi|21282735|ref|NP_645823.1| hypothetical protein MW1006 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485961|ref|YP_043182.1| methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651733|ref|YP_185997.1| hypothetical protein SACOL1133 [Staphylococcus aureus subsp. aureus
COL]
gi|87161982|ref|YP_493721.1| hypothetical protein SAUSA300_1023 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267616|ref|YP_001246559.1| methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150393671|ref|YP_001316346.1| methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|151221199|ref|YP_001332021.1| hypothetical protein NWMN_0987 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979446|ref|YP_001441705.1| hypothetical protein SAHV_1115 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509300|ref|YP_001574959.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140477|ref|ZP_03564970.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253316754|ref|ZP_04839967.1| hypothetical protein SauraC_11535 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731734|ref|ZP_04865899.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733642|ref|ZP_04867807.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|255005910|ref|ZP_05144511.2| hypothetical protein SauraM_05555 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425175|ref|ZP_05601601.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427838|ref|ZP_05604236.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430473|ref|ZP_05606855.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433175|ref|ZP_05609533.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257436074|ref|ZP_05612121.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257795146|ref|ZP_05644125.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258407146|ref|ZP_05680295.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258421763|ref|ZP_05684684.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|258436128|ref|ZP_05689111.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|258443383|ref|ZP_05691726.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258444994|ref|ZP_05693311.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|258449831|ref|ZP_05697929.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|258451930|ref|ZP_05699946.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|258454930|ref|ZP_05702893.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|262048708|ref|ZP_06021590.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262052219|ref|ZP_06024425.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|269202736|ref|YP_003282005.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894151|ref|ZP_06302382.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282910699|ref|ZP_06318502.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913899|ref|ZP_06321686.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282916373|ref|ZP_06324135.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282918822|ref|ZP_06326557.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923944|ref|ZP_06331620.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282925308|ref|ZP_06332965.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928646|ref|ZP_06336243.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|283770184|ref|ZP_06343076.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|284024049|ref|ZP_06378447.1| hypothetical protein Saura13_05639 [Staphylococcus aureus subsp.
aureus 132]
gi|293500934|ref|ZP_06666785.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509891|ref|ZP_06668600.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526478|ref|ZP_06671163.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|294848114|ref|ZP_06788861.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405928|ref|ZP_06815737.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296276074|ref|ZP_06858581.1| hypothetical protein SauraMR_06982 [Staphylococcus aureus subsp.
aureus MR1]
gi|297208239|ref|ZP_06924669.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246398|ref|ZP_06930242.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912316|ref|ZP_07129759.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381319|ref|ZP_07363972.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014316|ref|YP_005290552.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861718|ref|YP_005744438.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384864350|ref|YP_005749709.1| methyltransferase small domain-containing protein [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384867995|ref|YP_005748191.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869656|ref|YP_005752370.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|385781351|ref|YP_005757522.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386830659|ref|YP_006237313.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387142735|ref|YP_005731128.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|387150265|ref|YP_005741829.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|387780236|ref|YP_005755034.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|415689697|ref|ZP_11452925.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|415691918|ref|ZP_11453984.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|417648533|ref|ZP_12298357.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|417652161|ref|ZP_12301914.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|417655561|ref|ZP_12305271.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|417796256|ref|ZP_12443471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799032|ref|ZP_12446184.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|417802004|ref|ZP_12449081.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|417889062|ref|ZP_12533161.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|417899708|ref|ZP_12543610.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|417901357|ref|ZP_12545233.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|418276771|ref|ZP_12891608.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|418312598|ref|ZP_12924107.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|418316553|ref|ZP_12927990.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|418317952|ref|ZP_12929367.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321883|ref|ZP_12933222.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424261|ref|ZP_12997386.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427188|ref|ZP_13000203.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430099|ref|ZP_13003016.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433058|ref|ZP_13005840.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436722|ref|ZP_13008527.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439600|ref|ZP_13011310.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442645|ref|ZP_13014249.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445710|ref|ZP_13017190.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448660|ref|ZP_13020054.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451466|ref|ZP_13022802.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454541|ref|ZP_13025804.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457415|ref|ZP_13028620.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568100|ref|ZP_13132454.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|418571236|ref|ZP_13135475.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|418574623|ref|ZP_13138790.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|418578954|ref|ZP_13143049.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418598423|ref|ZP_13161933.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|418639765|ref|ZP_13202006.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418642550|ref|ZP_13204736.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418644638|ref|ZP_13206778.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647725|ref|ZP_13209788.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649274|ref|ZP_13211302.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418653110|ref|ZP_13215056.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655581|ref|ZP_13217432.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418657836|ref|ZP_13219590.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418662014|ref|ZP_13223572.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872061|ref|ZP_13426417.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875057|ref|ZP_13429319.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418877962|ref|ZP_13432198.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880798|ref|ZP_13435017.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883725|ref|ZP_13437922.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886383|ref|ZP_13440532.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418894575|ref|ZP_13448673.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418903333|ref|ZP_13457374.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906060|ref|ZP_13460087.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911730|ref|ZP_13465713.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914219|ref|ZP_13468191.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418919970|ref|ZP_13473910.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418928380|ref|ZP_13482266.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931108|ref|ZP_13484955.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418933958|ref|ZP_13487782.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418948384|ref|ZP_13500688.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418954495|ref|ZP_13506455.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418987945|ref|ZP_13535618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418990984|ref|ZP_13538645.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419775204|ref|ZP_14301146.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784856|ref|ZP_14310617.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|421150722|ref|ZP_15610376.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422743487|ref|ZP_16797471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745646|ref|ZP_16799585.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424777716|ref|ZP_18204675.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|424784950|ref|ZP_18211753.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|440705889|ref|ZP_20886641.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734571|ref|ZP_20914183.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443635748|ref|ZP_21119870.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|443640448|ref|ZP_21124437.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|448742009|ref|ZP_21723964.1| methyltransferase [Staphylococcus aureus KT/314250]
gi|13700924|dbj|BAB42220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246894|dbj|BAB57286.1| similar to methyltransferase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204173|dbj|BAB94871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244404|emb|CAG42832.1| putative methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57285919|gb|AAW38013.1| conserved hypothetical protein TIGR00095 [Staphylococcus aureus
subsp. aureus COL]
gi|87127956|gb|ABD22470.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|147740685|gb|ABQ48983.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946123|gb|ABR52059.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH1]
gi|150373999|dbj|BAF67259.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721581|dbj|BAF77998.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368109|gb|ABX29080.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724548|gb|EES93277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728342|gb|EES97071.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|257272151|gb|EEV04283.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274679|gb|EEV06166.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278601|gb|EEV09220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281268|gb|EEV11405.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257284356|gb|EEV14476.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257789118|gb|EEV27458.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257841301|gb|EEV65746.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257842096|gb|EEV66524.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|257848817|gb|EEV72802.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|257851473|gb|EEV75412.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257856116|gb|EEV79034.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|257856751|gb|EEV79654.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|257860145|gb|EEV82977.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|257862810|gb|EEV85575.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|259159890|gb|EEW44928.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|259163164|gb|EEW47724.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262075026|gb|ACY10999.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940618|emb|CBI48997.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|282313916|gb|EFB44308.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316632|gb|EFB47006.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282319813|gb|EFB50161.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282321967|gb|EFB52291.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282325304|gb|EFB55613.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282589685|gb|EFB94771.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282592584|gb|EFB97594.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763637|gb|EFC03766.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|283460331|gb|EFC07421.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|285816804|gb|ADC37291.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|290920550|gb|EFD97613.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|291095939|gb|EFE26200.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467341|gb|EFF09858.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|294824914|gb|EFG41336.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969363|gb|EFG45383.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886978|gb|EFH25881.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176764|gb|EFH36024.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886562|gb|EFK81764.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750947|gb|ADL65124.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340302|gb|EFM06243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438500|gb|ADQ77571.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829517|emb|CBX34359.1| methyltransferase small domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130290|gb|EFT86277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|315196153|gb|EFU26510.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|320141061|gb|EFW32908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143118|gb|EFW34908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313791|gb|AEB88204.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|329725181|gb|EGG61670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728779|gb|EGG65200.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730801|gb|EGG67180.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|334269755|gb|EGL88168.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|334274924|gb|EGL93230.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|334275767|gb|EGL94046.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|341844636|gb|EGS85848.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|341845196|gb|EGS86398.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|341853130|gb|EGS94012.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|344177338|emb|CCC87804.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|364522340|gb|AEW65090.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365174049|gb|EHM64449.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|365224498|gb|EHM65763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365238243|gb|EHM79080.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|365240832|gb|EHM81591.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|365244644|gb|EHM85301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978754|gb|EHO95995.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|371980782|gb|EHO97983.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|371980940|gb|EHO98137.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363013|gb|AEZ37118.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|374399780|gb|EHQ70916.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|375015663|gb|EHS09307.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375016777|gb|EHS10412.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375019822|gb|EHS13373.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375025041|gb|EHS18451.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375029435|gb|EHS22763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029647|gb|EHS22972.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375036332|gb|EHS29407.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375037297|gb|EHS30339.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375039945|gb|EHS32857.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375367570|gb|EHS71521.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375372383|gb|EHS76125.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|375372725|gb|EHS76450.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|377695576|gb|EHT19937.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695928|gb|EHT20285.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377696981|gb|EHT21336.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377715459|gb|EHT39649.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377715945|gb|EHT40131.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377719733|gb|EHT43903.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723106|gb|EHT47231.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725108|gb|EHT49223.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|377726565|gb|EHT50676.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731691|gb|EHT55744.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377738292|gb|EHT62301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742348|gb|EHT66333.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377757721|gb|EHT81609.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377765360|gb|EHT89210.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377766969|gb|EHT90793.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377771102|gb|EHT94860.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377771738|gb|EHT95492.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363700|gb|EID41028.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970888|gb|EID86978.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|385196051|emb|CCG15668.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387719164|gb|EIK07116.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387719603|gb|EIK07545.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|387720848|gb|EIK08747.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387725924|gb|EIK13515.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387728571|gb|EIK16058.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731087|gb|EIK18427.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387736696|gb|EIK23785.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387738237|gb|EIK25290.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387738336|gb|EIK25380.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387745438|gb|EIK32193.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387746002|gb|EIK32747.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747973|gb|EIK34672.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394329210|gb|EJE55325.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402346396|gb|EJU81486.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423347|emb|CCJ10758.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408425337|emb|CCJ12724.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408427325|emb|CCJ14688.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408429312|emb|CCJ26477.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408431300|emb|CCJ18615.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408433294|emb|CCJ20579.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408435285|emb|CCJ22545.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408437270|emb|CCJ24513.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|421956360|gb|EKU08689.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|436431599|gb|ELP28952.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436507655|gb|ELP43324.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|443405129|gb|ELS63739.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|443408807|gb|ELS67318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|445547228|gb|ELY15499.1| methyltransferase [Staphylococcus aureus KT/314250]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGMDKVIFVDQN 71
>gi|329768889|ref|ZP_08260317.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
gi|328837252|gb|EGF86889.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
Length = 183
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLDC---------EGRVLDLFGGTGG 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNV---LIPNLEW 201
+GIE++SRG V F++ + SN+ IPN E+
Sbjct: 52 LGIESLSRGADYVTFIDGSNNAIKVIRSNIEKCRIPNSEY 91
>gi|427427529|ref|ZP_18917573.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Caenispirillum
salinarum AK4]
gi|425883455|gb|EKV32131.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Caenispirillum
salinarum AK4]
Length = 186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS--LRPGRWLDLYSGT 166
++++ G R ++L +P+G DVRP + + A F L G P L+ R LD ++GT
Sbjct: 1 MRIVAGIHRGRRLSAPEGRDVRPTADRTREAVFSKL-GHGWDPDDFQLQGARVLDAFAGT 59
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
G++G+EA+SRG + V F+E P ++ VL N+E
Sbjct: 60 GALGLEALSRGAAHVTFLEQAPASLA-VLKQNVE 92
>gi|392381512|ref|YP_005030709.1| putative methyltransferase [Azospirillum brasilense Sp245]
gi|356876477|emb|CCC97246.1| putative methyltransferase [Azospirillum brasilense Sp245]
Length = 212
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCP--ASLRPGRWL-DLYSG 165
++++GGK R ++L +P G D RP + + + F+IL A P A L G + D + G
Sbjct: 21 VRIVGGKHRGRRLAAPGGSDTRPTTDRTRESLFNILSHADWGPDGADLLEGAVVVDAFCG 80
Query: 166 TGSVGIEAISRGCSEVHFVEM 186
TG++G+EA+SRG + V F++M
Sbjct: 81 TGALGLEALSRGAAHVSFLDM 101
>gi|148380448|ref|YP_001254989.1| methyltransferase [Clostridium botulinum A str. ATCC 3502]
gi|153934015|ref|YP_001384671.1| methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153937379|ref|YP_001388192.1| methyltransferase [Clostridium botulinum A str. Hall]
gi|148289932|emb|CAL84045.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152930059|gb|ABS35559.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
ATCC 19397]
gi|152933293|gb|ABS38792.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
Hall]
Length = 185
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QIYGSMVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SRG + V+ P
Sbjct: 55 LGLEAASRGAKFSYLVDKSP 74
>gi|420163627|ref|ZP_14670370.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|420167465|ref|ZP_14674123.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
gi|394234050|gb|EJD79637.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|394238434|gb|EJD83902.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLNLMSQAEVY 94
>gi|418630667|ref|ZP_13193144.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
gi|374836875|gb|EHS00449.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
Length = 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|389575665|ref|ZP_10165693.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
gi|389311150|gb|EIM56083.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
Length = 189
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L + G D RP + +K F+++Q+ + +LDL++G+G+
Sbjct: 1 MRVIAGKCRSLPLKTLPGRDTRPTTDRIKETLFNVMQN------DIPQACFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
+GIEA+SRG FV+ V V+ NL + D + ++ +
Sbjct: 55 IGIEALSRGAQSCCFVDQSRKAVE-VIKENLAFCRLTDQAEVYQM 98
>gi|255994774|ref|ZP_05427909.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
49989]
gi|255993487|gb|EEU03576.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
49989]
Length = 179
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + +KL PK + RP E V+ A F +LQ+ + + DL++GTG+
Sbjct: 1 MRIIAGRYKGRKLEVPKAREARPTSEKVREAVFSMLQN------YIEGAKVADLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G+EA+SRG + F E + + +L N++ G + +H
Sbjct: 55 MGLEALSRGAASCIFSE-NNISMQKILAANIKSVGADSSAELH 96
>gi|402818478|ref|ZP_10868061.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
gi|402503944|gb|EJW14476.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
Length = 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGTARGRSLKPVPGMGTRPTTDKVKEALFSMIGP------YFDGGYVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ DP V V+ N++ G + S ++
Sbjct: 55 LGIEALSRGAGQGIFVDKDPKAVE-VVKHNVQTAGVANRSEVY 96
>gi|386815781|ref|ZP_10102999.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
gi|386420357|gb|EIJ34192.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
Length = 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ LL+++GG+ R ++L +RP + V+ F+ LQ C R LDL++G
Sbjct: 4 NNLLRIIGGEWRSRRLKFADAPGLRPTPDRVRETLFNWLQVQVPC------SRCLDLFAG 57
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G++G EA+SRG EV VE P V+ L N+ G + +H
Sbjct: 58 SGAIGFEALSRGAQEVVMVEKHPAAVA-ALRENIALLGAQNAVLVH 102
>gi|88657736|ref|YP_507034.1| putative methyltransferase [Ehrlichia chaffeensis str. Arkansas]
gi|88599193|gb|ABD44662.1| putative methyltransferase [Ehrlichia chaffeensis str. Arkansas]
Length = 183
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L++ GK R +++ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
S+ EA+SRG V V+++ + +S V + E+ G ++ ++ VE +Q+
Sbjct: 57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQY 113
>gi|238063277|ref|ZP_04607986.1| methyltransferase [Micromonospora sp. ATCC 39149]
gi|237885088|gb|EEP73916.1| methyltransferase [Micromonospora sp. ATCC 39149]
Length = 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G ++L +P G RP + V+ A F +Q+ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRLAAPPGAGTRPTSDRVREALFSAVQA----DVDLAGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG + V VE DP
Sbjct: 57 AVGLEALSRGAAHVLLVESDP 77
>gi|254490497|ref|ZP_05103683.1| putative methyltransferase [Methylophaga thiooxidans DMS010]
gi|224464241|gb|EEF80504.1| putative methyltransferase [Methylophaga thiooxydans DMS010]
Length = 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG R +KL P+ +RP + V+ F+ LQ G R LDL++G+G+
Sbjct: 13 LRIIGGIWRGRKLGFPEVEGLRPTGDRVRETVFNWLQPILG------DSRCLDLFAGSGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G+EA SRG EV VE D +L NL ++++ + + F RAEQF
Sbjct: 67 LGLEAASRGAGEVVLVETDR-SAYQLLQSNL--------TALNASQCQLFHGRAEQF 114
>gi|297202619|ref|ZP_06920016.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197713194|gb|EDY57228.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 195
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LQGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWV-------VSNVLIPNLE 200
+VG+EA+SRG S VE D V N+ +P E
Sbjct: 59 AVGLEALSRGASHTLLVEADARAARTIRENVRNIGLPGAE 98
>gi|149184426|ref|ZP_01862744.1| N6-adenine-specific methylase [Erythrobacter sp. SD-21]
gi|148831746|gb|EDL50179.1| N6-adenine-specific methylase [Erythrobacter sp. SD-21]
Length = 181
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL++PKG RP + + F++L S G L LDL++G+G+
Sbjct: 1 MRIIAGDWRGRKLVAPKGEGTRPTADRTRETLFNMLASRLGGFEGLSV---LDLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG + FVE +P + +
Sbjct: 58 LGLEALSRGAAHCLFVEQEPDAIKAI 83
>gi|431794623|ref|YP_007221528.1| RsmD family RNA methyltransferase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784849|gb|AGA70132.1| RNA methyltransferase, RsmD family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + G++ RP + +KGA F++L+ + + LD++SGTG+
Sbjct: 1 MRIIAGDYRGQRLKAVPGINTRPTADKIKGAIFNVLRE------KVVDAKVLDMFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+ +EA+SRG E +E + V+ NLE G
Sbjct: 55 LALEALSRGAKEAILIE-KSRIAQRVIQENLEHLG 88
>gi|417644140|ref|ZP_12294157.1| RNA methyltransferase, RsmD family [Staphylococcus warneri VCU121]
gi|445059999|ref|YP_007385403.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
gi|330685099|gb|EGG96765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU121]
gi|443426056|gb|AGC90959.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL+ + S ++
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLKQLDLISQSEVY 94
>gi|384135009|ref|YP_005517723.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289094|gb|AEJ43204.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 184
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+ VRP + VK + F+++ P L G +DL++GTGS
Sbjct: 1 MRVIAGRWRGILLESPRSQAVRPTTDRVKESMFNLI------PHRLE-GLVIDLFAGTGS 53
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG S FV+ DP
Sbjct: 54 LGIEALSRGASRAIFVDKDP 73
>gi|408670833|ref|YP_006870904.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
gi|407240655|gb|AFT83538.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
Length = 178
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 16/117 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGVVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ +EA+SRG S H VE + L+ N + V + + F +RAE F
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDF 101
>gi|86742287|ref|YP_482687.1| hypothetical protein Francci3_3606 [Frankia sp. CcI3]
gi|86569149|gb|ABD12958.1| conserved hypothetical protein 95 [Frankia sp. CcI3]
Length = 185
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L+ P G RP E + F+ L + LR R DLY+G+G
Sbjct: 1 MTRIISGTAGGRRLVVPPGTTTRPTSERAREGLFNTLSTC----LDLRGARIADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVV 191
+VG+EA+SRG + V+ DP V+
Sbjct: 57 AVGLEALSRGATHALLVDRDPVVI 80
>gi|261749952|ref|ZP_05993661.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261739705|gb|EEY27631.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 93
>gi|291278590|ref|YP_003495425.1| DNA methylase [Deferribacter desulfuricans SSM1]
gi|290753292|dbj|BAI79669.1| DNA methylase [Deferribacter desulfuricans SSM1]
Length = 176
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + L+SPK VRP + V+ A F L + + LDL++GTG+
Sbjct: 1 MRITGGELRGRSLISPKSSGVRPTSDKVRSAIFSKLYN------KVVDSYVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
GIEA+SRG V FV+++
Sbjct: 55 FGIEALSRGAKFVTFVDIN 73
>gi|423317576|ref|ZP_17295481.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum ATCC 43767]
gi|405580168|gb|EKB54240.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum ATCC 43767]
Length = 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G+ + K++ +PK VRP + K A F IL + +S LDL+SG GS+
Sbjct: 6 RIISGQWKAKRISAPKHFIVRPTTDFAKEALFSILDNRYALASS----SVLDLFSGIGSI 61
Query: 170 GIEAISRGCSEVHFVEMD 187
+E SRGC ++ VEM+
Sbjct: 62 TLEFASRGCQDIQSVEMN 79
>gi|359791737|ref|ZP_09294577.1| methyltransferase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252210|gb|EHK55488.1| methyltransferase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 184
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRTNAIRPTTDRTREALFNVLAHR--FPDRLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEAMSRGASFCMFIE 75
>gi|239636372|ref|ZP_04677374.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
gi|239597727|gb|EEQ80222.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL+ + S ++
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKSNLKQLDLMSQSEVY 94
>gi|315658560|ref|ZP_07911432.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496889|gb|EFU85212.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 190
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIE +SRG +V FV+ + + V+ NL+ + + ++
Sbjct: 60 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVY 101
>gi|126664257|ref|ZP_01735249.1| putative methyltransferase [Flavobacteria bacterium BAL38]
gi|126623789|gb|EAZ94485.1| putative methyltransferase [Flavobacteria bacterium BAL38]
Length = 192
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + +L + LDL+SGTG+
Sbjct: 1 MRIISGKHKGRRLVAPKNLPVRPTTDMCKESLFNILNNY----FNLHGLKVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+ E SRG + V+ D V+ + E LD+S+I + V FLE+++
Sbjct: 57 ISYEFASRGAGPITSVDGDMGCVNFIKKTATELD--LDISAIKS-DVFKFLEKSK 108
>gi|219685880|ref|ZP_03540686.1| putative methyltransferase [Borrelia garinii Far04]
gi|219672579|gb|EED29612.1| putative methyltransferase [Borrelia garinii Far04]
Length = 189
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVE 185
+ +EA+SRG S H VE
Sbjct: 65 IMSVEALSRGASLAHLVE 82
>gi|219684628|ref|ZP_03539571.1| putative methyltransferase [Borrelia garinii PBr]
gi|219671990|gb|EED29044.1| putative methyltransferase [Borrelia garinii PBr]
Length = 189
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVE 185
+ +EA+SRG S H VE
Sbjct: 65 IMSVEALSRGASLAHLVE 82
>gi|383788432|ref|YP_005473001.1| putative methyltransferase [Caldisericum exile AZM16c01]
gi|381364069|dbj|BAL80898.1| putative methyltransferase [Caldisericum exile AZM16c01]
Length = 186
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 109 LQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GK + +++SP + +++RP + V+ A FD+++ + +LDL++G+G
Sbjct: 1 MRIVSGKFKGMEIISPPRNLELRPTSDRVREAIFDVIR------FDITDKVFLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+VGIEA+S G V+FVE + V +V+ N+ G + I V FL
Sbjct: 55 AVGIEAVSEGAKFVYFVENNKKAV-DVIKKNIAKFGIREQCKILVRDVFKFL 105
>gi|345849806|ref|ZP_08802813.1| DNA methylase [Streptomyces zinciresistens K42]
gi|345638787|gb|EGX60287.1| DNA methylase [Streptomyces zinciresistens K42]
Length = 195
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LKGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG S VE D
Sbjct: 59 AVGLEALSRGASHTLLVEAD 78
>gi|417660078|ref|ZP_12309669.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|417909883|ref|ZP_12553616.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|420222061|ref|ZP_14726986.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|420224923|ref|ZP_14729761.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|420229260|ref|ZP_14733966.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
gi|329734402|gb|EGG70715.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|341652492|gb|EGS76280.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|394290092|gb|EJE33962.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|394294326|gb|EJE38012.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|394299026|gb|EJE42577.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|416124445|ref|ZP_11595441.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418329247|ref|ZP_12940326.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418613845|ref|ZP_13176843.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|418634577|ref|ZP_13196970.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|420175083|ref|ZP_14681528.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|420189676|ref|ZP_14695644.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|420192826|ref|ZP_14698683.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|420204071|ref|ZP_14709631.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
gi|319401555|gb|EFV89765.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365230909|gb|EHM71984.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374822511|gb|EHR86532.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|374836800|gb|EHS00377.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|394244369|gb|EJD89714.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|394260642|gb|EJE05451.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|394261011|gb|EJE05813.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|394274085|gb|EJE18510.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|417910742|ref|ZP_12554458.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|418622142|ref|ZP_13184898.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|420187646|ref|ZP_14693666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|420210969|ref|ZP_14716358.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
gi|341654930|gb|EGS78666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|374827517|gb|EHR91379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|394256088|gb|EJE01024.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|394282906|gb|EJE27088.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|313887956|ref|ZP_07821635.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846122|gb|EFR33504.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 188
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL++PKG+D RP + VK + F+IL + LDL+ G+G+
Sbjct: 1 MRIISGNRRGLKLIAPKGLDTRPTEDRVKESVFNILGQ------NFFDVTVLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
GIE +SRG + +FV+ + V NL+ D + +E L +A
Sbjct: 55 NGIEFLSRGAEKAYFVDKSKEAIDCVK-KNLDKAKLTD----QAIVIENHLNQA 103
>gi|392971745|ref|ZP_10337138.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
gi|392510284|emb|CCI60426.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIEA+SRG ++ FV+ + V V+ NL+
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLK 83
>gi|51246625|ref|YP_066509.1| hypothetical protein DP2773 [Desulfotalea psychrophila LSv54]
gi|50877662|emb|CAG37502.1| hypothetical protein DP2773 [Desulfotalea psychrophila LSv54]
Length = 210
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
L+++ G AR +KL P+ +RP + + A F IL + G C LD Y+GT
Sbjct: 21 LRIISGNARGRKLFPPRNNSIRPTSDRAREALFSILGERVEGSC--------ILDCYAGT 72
Query: 167 GSVGIEAISRGCSEVHFVE 185
G++GIEA+SRG F++
Sbjct: 73 GALGIEALSRGAKSAVFID 91
>gi|260101770|ref|ZP_05752007.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417007040|ref|ZP_11945249.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
gi|260084414|gb|EEW68534.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328468539|gb|EGF39541.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
Length = 182
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R ++ F E E+
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAALKLFAENQEK 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|163844394|ref|YP_001622049.1| methyltransferase [Brucella suis ATCC 23445]
gi|163675117|gb|ABY39227.1| Methyltransferase [Brucella suis ATCC 23445]
Length = 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|381168400|ref|ZP_09877596.1| Putative methyltransferase [Phaeospirillum molischianum DSM 120]
gi|380682550|emb|CCG42414.1| Putative methyltransferase [Phaeospirillum molischianum DSM 120]
Length = 186
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L++P G+ RP + V+ A FDIL + L +D ++G+G+
Sbjct: 3 MRIVAGSHKGRRLVAPSGLTARPTADRVRQALFDILAHSDLV--DLEGATVIDAFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG + F+++ P +++V
Sbjct: 61 LGLEALSRGAARAWFMDIHPQSLASV 86
>gi|23499967|ref|NP_699407.1| hypothetical protein BRA0207 [Brucella suis 1330]
gi|62317154|ref|YP_223007.1| hypothetical protein BruAb2_0202 [Brucella abortus bv. 1 str.
9-941]
gi|83269137|ref|YP_418428.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar
Abortus 2308]
gi|148558154|ref|YP_001257254.1| hypothetical protein BOV_A0186 [Brucella ovis ATCC 25840]
gi|161620285|ref|YP_001594171.1| methyltransferase [Brucella canis ATCC 23365]
gi|189022413|ref|YP_001932154.1| hypothetical protein BAbS19_II01890 [Brucella abortus S19]
gi|256014992|ref|YP_003105001.1| methyltransferase [Brucella microti CCM 4915]
gi|260568471|ref|ZP_05838940.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260756975|ref|ZP_05869323.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260762894|ref|ZP_05875226.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882786|ref|ZP_05894400.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261220058|ref|ZP_05934339.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313692|ref|ZP_05952889.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261323528|ref|ZP_05962725.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|265986929|ref|ZP_06099486.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265996595|ref|ZP_06109152.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|340791963|ref|YP_004757427.1| methyltransferase [Brucella pinnipedialis B2/94]
gi|376270749|ref|YP_005113794.1| N6-adenine-specific methylase [Brucella abortus A13334]
gi|376277083|ref|YP_005153144.1| N6-adenine-specific methylase [Brucella canis HSK A52141]
gi|376278189|ref|YP_005108222.1| hypothetical protein BSVBI22_B0203 [Brucella suis VBI22]
gi|384222751|ref|YP_005613916.1| hypothetical protein BS1330_II0204 [Brucella suis 1330]
gi|423168971|ref|ZP_17155673.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI435a]
gi|423171596|ref|ZP_17158270.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI474]
gi|423174674|ref|ZP_17161344.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI486]
gi|423176551|ref|ZP_17163217.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI488]
gi|423181025|ref|ZP_17167665.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI010]
gi|423184158|ref|ZP_17170794.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI016]
gi|423187307|ref|ZP_17173920.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI021]
gi|423189728|ref|ZP_17176337.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI259]
gi|23463548|gb|AAN33412.1| conserved hypothetical protein TIGR00095 [Brucella suis 1330]
gi|62197347|gb|AAX75646.1| conserved hypothetical protein TIGR00095 [Brucella abortus bv. 1
str. 9-941]
gi|82939411|emb|CAJ12365.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA
methyltransferase, N12 class:Conserved hypothetical
protein 95 [Brucella melitensis biovar Abortus 2308]
gi|148369439|gb|ABQ62311.1| conserved hypothetical protein TIGR00095 [Brucella ovis ATCC 25840]
gi|161337096|gb|ABX63400.1| methyltransferase [Brucella canis ATCC 23365]
gi|189020987|gb|ACD73708.1| conserved hypothetical protein TIGR00095 [Brucella abortus S19]
gi|255997652|gb|ACU49339.1| methyltransferase [Brucella microti CCM 4915]
gi|260155136|gb|EEW90217.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260673315|gb|EEX60136.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677083|gb|EEX63904.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872314|gb|EEX79383.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260918642|gb|EEX85295.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261299508|gb|EEY03005.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302718|gb|EEY06215.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|262550892|gb|EEZ07053.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264659126|gb|EEZ29387.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|340560422|gb|AEK55659.1| methyltransferase [Brucella pinnipedialis B2/94]
gi|343384199|gb|AEM19690.1| hypothetical protein BS1330_II0204 [Brucella suis 1330]
gi|358259627|gb|AEU07360.1| hypothetical protein BSVBI22_B0203 [Brucella suis VBI22]
gi|363401921|gb|AEW18890.1| N6-adenine-specific methylase [Brucella abortus A13334]
gi|363405457|gb|AEW15751.1| N6-adenine-specific methylase [Brucella canis HSK A52141]
gi|374536018|gb|EHR07538.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI474]
gi|374538177|gb|EHR09687.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI435a]
gi|374539243|gb|EHR10749.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI486]
gi|374545615|gb|EHR17075.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI010]
gi|374546458|gb|EHR17917.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI016]
gi|374553566|gb|EHR24981.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI488]
gi|374555111|gb|EHR26520.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI021]
gi|374555768|gb|EHR27173.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI259]
Length = 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|58585048|ref|YP_198621.1| N-6 adenine-specific DNA methylase [Wolbachia endosymbiont strain
TRS of Brugia malayi]
gi|58419364|gb|AAW71379.1| N6-adenine-specific methylase [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 182
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +++ + K + RP M +V+ A F+IL S + LDL+ G+G
Sbjct: 1 MLRIIAGKYRGRRIATGKHLAARPTMSIVREAVFNILSS----KKIIYNLNILDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S EA+SRG V++D +
Sbjct: 57 SFSFEALSRGAKHAFIVDLDYY 78
>gi|27467741|ref|NP_764378.1| hypothetical protein SE0823 [Staphylococcus epidermidis ATCC 12228]
gi|57866626|ref|YP_188297.1| hypothetical protein SERP0714 [Staphylococcus epidermidis RP62A]
gi|282876424|ref|ZP_06285291.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|417645470|ref|ZP_12295372.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|417656585|ref|ZP_12306268.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|417913823|ref|ZP_12557485.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|418325024|ref|ZP_12936234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|418411568|ref|ZP_12984836.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
gi|418603430|ref|ZP_13166815.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|418606302|ref|ZP_13169588.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|418609819|ref|ZP_13172953.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|418612993|ref|ZP_13176014.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|418616729|ref|ZP_13179653.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|418624902|ref|ZP_13187562.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|418626718|ref|ZP_13189314.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|418628993|ref|ZP_13191509.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|418663777|ref|ZP_13225285.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|419768668|ref|ZP_14294784.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772624|ref|ZP_14298655.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420164705|ref|ZP_14671422.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|420169693|ref|ZP_14676272.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|420172850|ref|ZP_14679348.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|420177458|ref|ZP_14683794.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|420180241|ref|ZP_14686496.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|420182818|ref|ZP_14688951.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|420185192|ref|ZP_14691288.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|420194452|ref|ZP_14700263.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|420198594|ref|ZP_14704298.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|420198936|ref|ZP_14704620.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|420201346|ref|ZP_14706968.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|420206532|ref|ZP_14712042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|420210663|ref|ZP_14716083.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|420214371|ref|ZP_14719650.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|420217151|ref|ZP_14722335.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|420218650|ref|ZP_14723709.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|420226940|ref|ZP_14731713.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|420231624|ref|ZP_14736269.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|420234306|ref|ZP_14738871.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|421607351|ref|ZP_16048597.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|27315285|gb|AAO04420.1|AE016746_210 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637284|gb|AAW54072.1| conserved hypothetical protein TIGR00095 [Staphylococcus
epidermidis RP62A]
gi|281295449|gb|EFA87976.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|329732693|gb|EGG69042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|329736246|gb|EGG72518.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|341654518|gb|EGS78262.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|365228930|gb|EHM70102.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|374406155|gb|EHQ77058.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|374407599|gb|EHQ78452.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|374408551|gb|EHQ79367.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|374411196|gb|EHQ81914.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|374817303|gb|EHR81488.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|374820807|gb|EHR84883.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|374826167|gb|EHR90075.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|374831262|gb|EHR95004.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|374834987|gb|EHR98618.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|383359251|gb|EID36681.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359494|gb|EID36917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394237133|gb|EJD82627.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|394241527|gb|EJD86941.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|394243300|gb|EJD88671.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|394247842|gb|EJD93084.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|394249281|gb|EJD94494.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|394251280|gb|EJD96379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|394255226|gb|EJE00183.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|394264037|gb|EJE08745.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|394264554|gb|EJE09234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|394272622|gb|EJE17072.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|394272951|gb|EJE17395.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|394275943|gb|EJE20308.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|394278371|gb|EJE22688.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|394283736|gb|EJE27901.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|394290507|gb|EJE34362.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|394292146|gb|EJE35916.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|394297441|gb|EJE41038.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|394302166|gb|EJE45614.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|394304360|gb|EJE47765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|406657143|gb|EKC83536.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|410893112|gb|EKS40903.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
Length = 180
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 94
>gi|395771779|ref|ZP_10452294.1| RNA methylase [Streptomyces acidiscabies 84-104]
Length = 199
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + A +S G +SL R LDLY+G+G
Sbjct: 1 MTRVIAGEAGGRRLAVPPGTGTRPTSDRAREALMSTWESLLG--SSLTGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG + VE DP V +
Sbjct: 59 AVGLEALSRGAAHTLLVEADPKAVRTI 85
>gi|225686061|ref|YP_002734033.1| methyltransferase [Brucella melitensis ATCC 23457]
gi|256262818|ref|ZP_05465350.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|260564348|ref|ZP_05834833.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265989558|ref|ZP_06102115.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993340|ref|ZP_06105897.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|384212738|ref|YP_005601821.1| methyltransferase [Brucella melitensis M5-90]
gi|384409838|ref|YP_005598458.1| methyltransferase [Brucella melitensis M28]
gi|384446368|ref|YP_005660586.1| methyltransferase [Brucella melitensis NI]
gi|225642166|gb|ACO02079.1| methyltransferase [Brucella melitensis ATCC 23457]
gi|260151991|gb|EEW87084.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262764210|gb|EEZ10242.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000227|gb|EEZ12917.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092639|gb|EEZ16860.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|326410385|gb|ADZ67449.1| methyltransferase [Brucella melitensis M28]
gi|326553678|gb|ADZ88317.1| methyltransferase [Brucella melitensis M5-90]
gi|349744365|gb|AEQ09907.1| methyltransferase [Brucella melitensis NI]
Length = 187
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 59 LGLEALSRGARYATFVE 75
>gi|83859465|ref|ZP_00952986.1| hypothetical protein OA2633_13710 [Oceanicaulis sp. HTCC2633]
gi|83852912|gb|EAP90765.1| hypothetical protein OA2633_13710 [Oceanicaulis alexandrii
HTCC2633]
Length = 187
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + + +PKG RP + V+ + F+ L A L R +DL++G+G+
Sbjct: 1 MRIVAGAHKGRAITAPKGDKTRPTTDRVRESVFNKLTHAA-WGVELEGLRVMDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EAISRG S FVE DP
Sbjct: 60 LGLEAISRGASFALFVETDP 79
>gi|95929550|ref|ZP_01312292.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
gi|95134247|gb|EAT15904.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR K+L S +G+++RP + V+ A F L S G S LDL++GTG+
Sbjct: 1 MRIISGQARGKQLASVQGIEIRPTSDRVREALFSSLTSRLG---SFDGMEVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG + FV+
Sbjct: 58 LGLEALSRGAAHGCFVD 74
>gi|403046934|ref|ZP_10902403.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
gi|402763630|gb|EJX17723.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
Length = 180
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIEA+SRG ++ FV+ + V V+ NL+
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLK 83
>gi|373455604|ref|ZP_09547433.1| RsmD family RNA methyltransferase [Dialister succinatiphilus YIT
11850]
gi|371934697|gb|EHO62477.1| RsmD family RNA methyltransferase [Dialister succinatiphilus YIT
11850]
Length = 182
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ L SP G + RP + V+ + F++L + G + + LD+++GTG+
Sbjct: 1 MKIIGGNAKGTLLSSPAGRNTRPTLGRVRESVFNVLANVG-----ILETKVLDIFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG E F++
Sbjct: 56 MGLEALSRGAGEAVFLD 72
>gi|13476820|ref|NP_108389.1| hypothetical protein mlr8254 [Mesorhizobium loti MAFF303099]
gi|14027581|dbj|BAB53850.1| mlr8254 [Mesorhizobium loti MAFF303099]
Length = 184
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+G +RP + + A F++L L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRGSAIRPTTDRTREAVFNVLAHR--FAEQLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEALSRGASYGVFIE 75
>gi|392960530|ref|ZP_10325998.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|421054713|ref|ZP_15517678.1| methyltransferase [Pelosinus fermentans B4]
gi|421061081|ref|ZP_15523465.1| methyltransferase [Pelosinus fermentans B3]
gi|421063773|ref|ZP_15525719.1| methyltransferase [Pelosinus fermentans A12]
gi|421071576|ref|ZP_15532692.1| methyltransferase [Pelosinus fermentans A11]
gi|392440394|gb|EIW18074.1| methyltransferase [Pelosinus fermentans B4]
gi|392446841|gb|EIW24112.1| methyltransferase [Pelosinus fermentans A11]
gi|392452156|gb|EIW29109.1| methyltransferase [Pelosinus fermentans B3]
gi|392455107|gb|EIW31914.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|392462343|gb|EIW38438.1| methyltransferase [Pelosinus fermentans A12]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F++
Sbjct: 55 LGLEALSRGASTAVFID 71
>gi|116626789|ref|YP_828945.1| methyltransferase [Candidatus Solibacter usitatus Ellin6076]
gi|116229951|gb|ABJ88660.1| putative methyltransferase [Candidatus Solibacter usitatus
Ellin6076]
Length = 176
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL S G RP + ++ FDILQ+ + ++D Y+GTG+
Sbjct: 1 MRIIAGEYRSRKLKSLPGDATRPTSDRLRETIFDILQT------RIEGAVFVDAYAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VGIEA+SRG V F+E + + +
Sbjct: 55 VGIEALSRGARHVFFLEKNRAALDAI 80
>gi|302342192|ref|YP_003806721.1| methyltransferase [Desulfarculus baarsii DSM 2075]
gi|301638805|gb|ADK84127.1| methyltransferase [Desulfarculus baarsii DSM 2075]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+V GG+ R + L +P G D RP V+ A F+IL GG + R DL++G+G
Sbjct: 1 MLKVCGGELRGRALKAPAGHDTRPTAAKVRQALFNIL---GGRTSG---ARVCDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
++G+EA+SRG + FVE +V ++ NL G
Sbjct: 55 ALGVEALSRGAAWCLFVERR-RLVCRLIAQNLAGLGL 90
>gi|429741218|ref|ZP_19274881.1| RNA methyltransferase, RsmD family [Porphyromonas catoniae F0037]
gi|429159192|gb|EKY01709.1| RNA methyltransferase, RsmD family [Porphyromonas catoniae F0037]
Length = 187
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R++ PK + RP + K F++LQ L LDL+SGTGS
Sbjct: 1 MRIIGGKYKRRRFDVPKSFNARPTTDFAKENLFNVLQHY----IDLEGITALDLFSGTGS 56
Query: 169 VGIEAISRGCSEV 181
+ +E +SRG S V
Sbjct: 57 ISVELLSRGASRV 69
>gi|301059171|ref|ZP_07200111.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
gi|300446719|gb|EFK10544.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
Length = 186
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ + + L +PK +D+RP V+ A F+I+ L R LDL+SGTG
Sbjct: 1 MKITGGQIKGRILAAPKNLDIRPSSNKVRAAIFNIIGQ------DLSGTRVLDLFSGTGL 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FV+
Sbjct: 55 LGIEALSRGAVLGVFVD 71
>gi|111225167|ref|YP_715961.1| RNA methylase [Frankia alni ACN14a]
gi|111152699|emb|CAJ64442.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Frankia alni ACN14a]
Length = 190
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + +++GG A ++LL P G RP + + F+ L + P + R DLY
Sbjct: 2 TGASMTRIIGGTAGGRQLLVPAGRATRPTSDRAREGLFNTLSTCVDLPGA----RVADLY 57
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVV 191
+G+G+VG+EA+SRG + V+ DP V
Sbjct: 58 AGSGAVGLEALSRGAAHALLVDHDPAAV 85
>gi|385678572|ref|ZP_10052500.1| methyltransferase [Amycolatopsis sp. ATCC 39116]
Length = 186
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 112 LGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171
+ G A ++L P RP E V+ A F+ L++AG L R LDLY+G+G++G+
Sbjct: 1 MAGAASGRRLKVPA-QGTRPTSERVREALFNALEAAG----ELTDARVLDLYAGSGALGL 55
Query: 172 EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
EA+SRG ++ FVE D V VL N+ G S+ + VET L +
Sbjct: 56 EALSRGAADAVFVESDRRAV-QVLKANVSALGL--GGSVRSGPVETVLAQ 102
>gi|452994757|emb|CCQ93642.1| putative methyltransferase [Clostridium ultunense Esp]
Length = 183
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L PKG D RP + +K + F+IL+ + LDL++G+GS
Sbjct: 1 MRVIAGDKKGFRLKGPKGKDTRPTEDRIKESLFNILRYID------KDSMVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIE +SRG FV+ + + NLE TG D + +
Sbjct: 55 IGIEFLSRGAKRAFFVDR-SYESIRCIKENLEHTGLKDRAEV 95
>gi|17989383|ref|NP_542016.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|17985256|gb|AAL54280.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 35 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 92
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG FVE
Sbjct: 93 LGLEALSRGARYATFVE 109
>gi|421074204|ref|ZP_15535244.1| methyltransferase [Pelosinus fermentans JBW45]
gi|392527710|gb|EIW50796.1| methyltransferase [Pelosinus fermentans JBW45]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F++
Sbjct: 55 LGLEALSRGASAAVFID 71
>gi|448744684|ref|ZP_21726568.1| methyltransferase [Staphylococcus aureus KT/Y21]
gi|445561990|gb|ELY18175.1| methyltransferase [Staphylococcus aureus KT/Y21]
Length = 180
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K + S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKAIESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG +V FV+ +
Sbjct: 53 LGIEALSRGMDKVIFVDQN 71
>gi|145219574|ref|YP_001130283.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
gi|145205738|gb|ABP36781.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
Length = 188
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ G R +K+ + DVRP VK + FD L + + LDL++G GS
Sbjct: 1 MQIIAGAYRGRKIRTTSSQDVRPCSSRVKKSLFDTLLHR----FTFEEAKVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G EA+SRG + V FV+ P
Sbjct: 57 LGFEALSRGAASVTFVDRHP 76
>gi|449123911|ref|ZP_21760232.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
gi|448943701|gb|EMB24588.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
Length = 181
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
>gi|325108171|ref|YP_004269239.1| hypothetical protein Plabr_1606 [Planctomyces brasiliensis DSM
5305]
gi|324968439|gb|ADY59217.1| Conserved hypothetical protein CHP00095 [Planctomyces brasiliensis
DSM 5305]
Length = 195
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + ++L S GM RP+++ K FD L+ L+ LD++SGTGS
Sbjct: 1 MRIIAGRFKGRRLKSNPGMTTRPILDRAKQMLFDRLE------VDLKDACVLDVFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG F+E D
Sbjct: 55 MGLEALSRGAKTCVFIEQD 73
>gi|325956530|ref|YP_004291942.1| methyltransferase [Lactobacillus acidophilus 30SC]
gi|325333095|gb|ADZ07003.1| Methyltransferase [Lactobacillus acidophilus 30SC]
Length = 183
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFNG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAE 223
++GIEA+SRGC V+++ S ++ N+ T + I+ +R ++ F E+
Sbjct: 54 ALGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNIRSSAALKLFAEKEL 112
Query: 224 QF 225
+F
Sbjct: 113 KF 114
>gi|269123396|ref|YP_003305973.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
gi|268314722|gb|ACZ01096.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
Length = 183
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + + +LS G + RP +E VK A + I+ + + +LDLYSGTG+
Sbjct: 1 MRITSGYLKNRVILSRIGKETRPTLERVKEAIYSIIST------KVEDAIFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+ EA+SRG + +EMD + V+I N+
Sbjct: 55 MSFEAMSRGANRAVMIEMDKEALR-VIIENV 84
>gi|427712687|ref|YP_007061311.1| RsmD family RNA methyltransferase [Synechococcus sp. PCC 6312]
gi|427376816|gb|AFY60768.1| RNA methyltransferase, RsmD family [Synechococcus sp. PCC 6312]
Length = 191
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++KL +P G RP V+ A F+I Q S GC RWLDL +G+G++G EA+ R
Sbjct: 8 QRKLATPPGNQTRPTTAKVRQALFNIWQNSVSGC-------RWLDLCAGSGAMGAEALVR 60
Query: 177 GCSEVHFVEMDP 188
G S V +E +P
Sbjct: 61 GASVVVGIEQNP 72
>gi|392946605|ref|ZP_10312247.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
gi|392289899|gb|EIV95923.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
Length = 190
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++L P G RP + + F+ L + P + R DLY+G+G
Sbjct: 6 MTRIIGGTAGGRQLFVPTGRSTRPTSDRAREGLFNTLSTCVDLPGA----RVADLYAGSG 61
Query: 168 SVGIEAISRGCSEVHFVEMDPWVV 191
+VG+EA+SRG S V+ DP V
Sbjct: 62 AVGLEALSRGASHALLVDHDPAAV 85
>gi|349700729|ref|ZP_08902358.1| N6-adenine-specific methylase [Gluconacetobacter europaeus LMG
18494]
Length = 191
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTG 167
++++ G+ R + L +P G RP + V+ A FD L A L R R LD ++GTG
Sbjct: 1 MRIIAGECRGRTLHAPPGQATRPTADRVRQALFDTLAHASWAGMDLLRGARVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + FVE +
Sbjct: 61 ALGLEALSRGAATAVFVEQN 80
>gi|328948230|ref|YP_004365567.1| methyltransferase [Treponema succinifaciens DSM 2489]
gi|328448554|gb|AEB14270.1| methyltransferase [Treponema succinifaciens DSM 2489]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 109 LQVLGGKARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++ GGK + + +P G M +RP M+ ++ + F+I+ SL +LDL+SG+G
Sbjct: 1 MRITGGKLKGRVTETPYGKMAIRPAMDKMRESVFNIIG------FSLEGKSFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQ 224
++ +EA+S G S V EMD +L N++ + V + + VE FL+R ++
Sbjct: 55 TIALEAVSHGASAVTLCEMDKSKAKTIL-KNVKMAEEVGVRINCRFMSVELFLKRCKE 111
>gi|306845523|ref|ZP_07478092.1| methyltransferase, putative [Brucella inopinata BO1]
gi|306273844|gb|EFM55671.1| methyltransferase, putative [Brucella inopinata BO1]
Length = 211
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 25 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 82
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 83 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 117
>gi|83643464|ref|YP_431899.1| N6-adenine-specific methylase [Hahella chejuensis KCTC 2396]
gi|83631507|gb|ABC27474.1| N6-adenine-specific methylase [Hahella chejuensis KCTC 2396]
Length = 197
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
L+++GG R +KL P VRP + V+ F+ L + PG R LD+Y G+G
Sbjct: 14 LRIIGGSHRGRKLTFPALDGVRPTPDRVRETLFNWLMP-------IFPGPRCLDVYCGSG 66
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
++G+EA+SRG ++V F++ P + S++
Sbjct: 67 ALGLEALSRGAADVTFIDQSPVIASHL 93
>gi|425735339|ref|ZP_18853653.1| methyltransferase [Brevibacterium casei S18]
gi|425479745|gb|EKU46917.1| methyltransferase [Brevibacterium casei S18]
Length = 196
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KL++P G RP + VK + F +L+ G L+ LDL++G+G
Sbjct: 1 MRIIAGAHKGSKLVTPGGTGTRPTSDRVKESLFSMLEGYG----VLQAANVLDLFAGSGG 56
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG ++V FV+
Sbjct: 57 LGFEAMSRGAAQVVFVD 73
>gi|358051931|ref|ZP_09145957.1| methyltransferase [Staphylococcus simiae CCM 7213]
gi|357258581|gb|EHJ08612.1| methyltransferase [Staphylococcus simiae CCM 7213]
Length = 180
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLFDIDGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + V V+ NL+ + + ++
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVQ-VIKANLKQLDLMPQAEVY 94
>gi|170757382|ref|YP_001782037.1| methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246594|ref|ZP_19209911.1| methyltransferase [Clostridium botulinum CFSAN001628]
gi|169122594|gb|ACA46430.1| RNA methyltransferase, RsmD family [Clostridium botulinum B1 str.
Okra]
gi|428756387|gb|EKX78942.1| methyltransferase [Clostridium botulinum CFSAN001628]
Length = 185
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+G+EA SRG + V+ P +L N++ F D+ + + L E+F R
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFAR 109
>gi|445064228|ref|ZP_21376315.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
gi|444504404|gb|ELV05079.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+++PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKIITPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL 195
+G EA+SR V F+E+D V N+
Sbjct: 52 MGFEALSRNAGFVTFIEIDREAVKNIF 78
>gi|399047078|ref|ZP_10739210.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|433546116|ref|ZP_20502454.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
gi|398054911|gb|EJL47009.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|432182732|gb|ELK40295.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
Length = 188
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R +KL + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVIAGEHRGRKLAAVPGSGTRPTTDKVKESIFNMI-------GPYFDGGWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+GIEA+SRG + FVE D
Sbjct: 54 SLGIEALSRGADKAVFVERD 73
>gi|148284239|ref|YP_001248329.1| methylase [Orientia tsutsugamushi str. Boryong]
gi|146739678|emb|CAM79471.1| putative methylase [Orientia tsutsugamushi str. Boryong]
Length = 191
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG----GCPASLRPGRWLDLY 163
++Q++ GK + +K+ K + RP +K + F+IL S +L R LDL+
Sbjct: 1 MIQIISGKFKGQKIPVIKNNNYRPSTAKLKESMFNILASQAFNKTSAKIALSKARMLDLF 60
Query: 164 SGTGSVGIEAISRGCSEVHFVEMD 187
+GTG++ EA+SRG V ++++
Sbjct: 61 TGTGNIAFEALSRGVQHVTLIDIN 84
>gi|306840966|ref|ZP_07473707.1| methyltransferase, putative [Brucella sp. BO2]
gi|306289023|gb|EFM60288.1| methyltransferase, putative [Brucella sp. BO2]
Length = 236
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 50 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 107
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 108 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 142
>gi|229495591|ref|ZP_04389324.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317574|gb|EEN83474.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 184
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ PKG +RP ++ K A F + S S R LDL++GTGS
Sbjct: 1 MRIISGKYGHRRFDVPKGFKLRPTTDLAKEALFSTITSM----FSYEGARILDLFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+E SRG V VE P V+ +
Sbjct: 57 IGLEFASRGAEWVDMVEKQPKQVAFI 82
>gi|431805575|ref|YP_007232476.1| Ribosomal RNA small subunit methyltransferase D [Liberibacter
crescens BT-1]
gi|430799550|gb|AGA64221.1| Ribosomal RNA small subunit methyltransferase D [Liberibacter
crescens BT-1]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L + +RP + A F+IL P +L +D+++G GS
Sbjct: 1 MRIVGGKFRGRILSGSESNHIRPTRSQTREALFNILSHV--YPEALNATYMVDMFAGVGS 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRGC V F++
Sbjct: 59 IGLEALSRGCRYVFFID 75
>gi|158522750|ref|YP_001530620.1| putative methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158511576|gb|ABW68543.1| putative methyltransferase [Desulfococcus oleovorans Hxd3]
Length = 207
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
L V+GG + ++L SP GM +RP V+ A F+I PG LDL++GTG
Sbjct: 3 LTVIGGTLKGRRLFSPTGMAIRPTSGRVREALFNIFMHE-------TPGATVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
++ IEA+SRG + ++ P ++ +
Sbjct: 56 ALAIEALSRGAARAVLIDNTPAALAVI 82
>gi|319788722|ref|YP_004090037.1| methyltransferase [Ruminococcus albus 7]
gi|315450589|gb|ADU24151.1| methyltransferase [Ruminococcus albus 7]
Length = 182
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + +D RP ++VK A F +Q P S + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLDTLDTRPTTDMVKEAVFSAIQF--DVPGS----QVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVRV 215
+GIEA+SR S FV+ +P V V+ N+ F L++ S+ ++V
Sbjct: 55 MGIEALSREASHCVFVDNNPAAV-QVIKENISDCKFNTESRVLNMDSLDYIKV 106
>gi|294631618|ref|ZP_06710178.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
gi|292834951|gb|EFF93300.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
Length = 195
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG VE D
Sbjct: 59 AVGLEALSRGAGHTLLVEAD 78
>gi|444432145|ref|ZP_21227304.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
gi|443886974|dbj|GAC69025.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
Length = 188
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ ++L P RP + V+ A F+IL+S L R LDLY+G+G
Sbjct: 1 MTRIIAGRHGGRRLAVPDD-GTRPTSDRVREAVFNILES----RIDLDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
++GIEA+SRG + V+ + V+ NL G DV S+ T RV L Q
Sbjct: 56 ALGIEALSRGAASAALVDARRRATA-VIAKNLATVGAQDVGSVVTRRVADHLAGDAQI 112
>gi|42527386|ref|NP_972484.1| methyltransferase [Treponema denticola ATCC 35405]
gi|422342342|ref|ZP_16423282.1| methyltransferase [Treponema denticola F0402]
gi|449104956|ref|ZP_21741678.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
gi|449109063|ref|ZP_21745702.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|449111599|ref|ZP_21748192.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|449113587|ref|ZP_21750074.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|449116178|ref|ZP_21752629.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|41817971|gb|AAS12395.1| methyltransferase, putative [Treponema denticola ATCC 35405]
gi|325473657|gb|EGC76846.1| methyltransferase [Treponema denticola F0402]
gi|448954065|gb|EMB34848.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|448957572|gb|EMB38313.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|448958503|gb|EMB39233.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|448960336|gb|EMB41051.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|448962232|gb|EMB42925.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
Length = 183
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
>gi|328955649|ref|YP_004372982.1| methyltransferase [Coriobacterium glomerans PW2]
gi|328455973|gb|AEB07167.1| methyltransferase [Coriobacterium glomerans PW2]
Length = 203
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSA--GGCPASLRPGRWLDLYSG 165
++V+GG+ R ++L+ P G DV RP + V+ A ++++A GG + R LD + G
Sbjct: 1 MRVVGGRWRGRRLIEPVGRDVTRPTQDRVREACASMIEAALEGGIAGA----RVLDAFGG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMD 187
TG++GIE +SRG S FV+ D
Sbjct: 57 TGALGIEMLSRGASHATFVDSD 78
>gi|449105069|ref|ZP_21741779.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|449119747|ref|ZP_21756142.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|449122137|ref|ZP_21758483.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|451969384|ref|ZP_21922613.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
gi|448949050|gb|EMB29876.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|448949578|gb|EMB30403.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|448967397|gb|EMB48033.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|451701773|gb|EMD56232.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
Length = 183
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
>gi|417894265|ref|ZP_12538287.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
gi|341852772|gb|EGS93656.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
Length = 180
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFSSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+GIEA+SRG +V FV+ + V V+ NL
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNL 82
>gi|121602303|ref|YP_989461.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|421761265|ref|ZP_16198068.1| putative methyltransferase [Bartonella bacilliformis INS]
gi|120614480|gb|ABM45081.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|411173049|gb|EKS43097.1| putative methyltransferase [Bartonella bacilliformis INS]
Length = 185
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SP+G +RP + + + F+I S G + + R LDL+SGTG+
Sbjct: 1 MRVVSGKFAGRVLFSPRGQSIRPTSDRTRESLFNIFSSREGQFWTGK--RILDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|242242429|ref|ZP_04796874.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
gi|242234136|gb|EES36448.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 101
>gi|265984949|ref|ZP_06097684.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|264663541|gb|EEZ33802.1| conserved hypothetical protein [Brucella sp. 83/13]
Length = 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 22 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 79
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 80 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 114
>gi|293366888|ref|ZP_06613564.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319189|gb|EFE59559.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 101
>gi|251810578|ref|ZP_04825051.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
gi|251805738|gb|EES58395.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG ++ FV+ + V V+ NL + + ++
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVY 101
>gi|357053068|ref|ZP_09114171.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
gi|355386047|gb|EHG33088.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
Length = 185
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSAKRLLLKTLDGLDTRPTTDRIKETLFNMLQP------DLPDCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG +E +P
Sbjct: 55 IGIEALSRGAGLAVMIENNP 74
>gi|395785580|ref|ZP_10465310.1| RsmD family RNA methyltransferase [Bartonella tamiae Th239]
gi|423717524|ref|ZP_17691714.1| RsmD family RNA methyltransferase [Bartonella tamiae Th307]
gi|395424611|gb|EJF90792.1| RsmD family RNA methyltransferase [Bartonella tamiae Th239]
gi|395427315|gb|EJF93423.1| RsmD family RNA methyltransferase [Bartonella tamiae Th307]
Length = 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L++P G +RP + + + F+IL S R R LDL+SGTG+
Sbjct: 1 MRIVAGKYSGRSLVTPSGDAIRPTTDRTRESLFNILASRQNNFWHNR--RVLDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSI 210
+GIEA+SRG FVE V LI N+E G V+ I
Sbjct: 59 LGIEALSRGAEAAVFVEHS--VEGRALIHKNIEAIGLQGVARI 99
>gi|161507338|ref|YP_001577292.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
gi|160348327|gb|ABX27001.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
Length = 182
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQFFNG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAE 223
++GIEA+SRG V+++ S ++ N+ T ++ S++ +R + F E E
Sbjct: 54 ALGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAALRLFAENQE 112
Query: 224 QF 225
+F
Sbjct: 113 KF 114
>gi|390451489|ref|ZP_10237063.1| putative methyltransferase [Nitratireductor aquibiodomus RA22]
gi|389660913|gb|EIM72555.1| putative methyltransferase [Nitratireductor aquibiodomus RA22]
Length = 184
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP + + A F+I + L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDAIRPTTDRTRQALFNIFEHR--HAGRLENARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + F+E + ++ N+E G + I
Sbjct: 59 LGLEALSRGSAFALFIE-EAAAARALIRTNVENFGLQGRAKI 99
>gi|449128921|ref|ZP_21765158.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
gi|448939083|gb|EMB20005.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
Length = 186
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
>gi|332293433|ref|YP_004432042.1| hypothetical protein Krodi_2799 [Krokinobacter sp. 4H-3-7-5]
gi|332171519|gb|AEE20774.1| Conserved hypothetical protein CHP00095 [Krokinobacter sp.
4H-3-7-5]
Length = 186
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+IL+S + R LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNILRSN----YHMSQLRVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETF--LERA 222
++ E SRG ++ V+ + V N E+ SI T++ + F LERA
Sbjct: 57 NISYEFASRGSDQITAVDANYGCVQFINKTAEEFEF-------SIQTIKSDVFKYLERA 108
>gi|429726931|ref|ZP_19261715.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 473
str. F0040]
gi|429145235|gb|EKX88328.1| RNA methyltransferase, RsmD family [Prevotella sp. oral taxon 473
str. F0040]
Length = 193
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K P+ RP + K F++L++ R LDL++GTGS
Sbjct: 1 MRVITGKYKGKHFEVPRSFKARPTTDFAKENLFNVLRAY----LDFEETRALDLFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ +E +SRGC EV VE D
Sbjct: 57 ITLELLSRGCREVMSVERD 75
>gi|152990742|ref|YP_001356464.1| DNA methylase [Nitratiruptor sp. SB155-2]
gi|151422603|dbj|BAF70107.1| DNA methylase [Nitratiruptor sp. SB155-2]
Length = 193
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++GGK + KKLL P+ R +++ A F+ILQ + +++++ G+GSV
Sbjct: 8 RIIGGKYKGKKLLLPQKEVTRSSKNILREALFNILQ------FDIVDKNFVEVFGGSGSV 61
Query: 170 GIEAISRGCSEVHFVEMD 187
G+EA+SRG V+F+E +
Sbjct: 62 GLEALSRGAKRVYFIEKN 79
>gi|258645992|ref|ZP_05733461.1| RNA methyltransferase, RsmD family [Dialister invisus DSM 15470]
gi|260403363|gb|EEW96910.1| RNA methyltransferase, RsmD family [Dialister invisus DSM 15470]
Length = 190
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 8/79 (10%)
Query: 109 LQVLGGKARRKKLLSP--KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG A+ LLSP KGM RP + V+ + F++L + G ++ R LD+++GT
Sbjct: 1 MRIIGGSAKGTALLSPVGKGM-TRPTLGRVRESIFNVLANVG-----MKDTRVLDIFAGT 54
Query: 167 GSVGIEAISRGCSEVHFVE 185
G++G+EA+SRG + F++
Sbjct: 55 GAMGLEALSRGAAHATFLD 73
>gi|291454387|ref|ZP_06593777.1| RNA methylase [Streptomyces albus J1074]
gi|291357336|gb|EFE84238.1| RNA methylase [Streptomyces albus J1074]
Length = 195
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLHGGP--LDGTRVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG + VE D V +
Sbjct: 59 AVGLEALSRGAAHALIVEADARAVRTI 85
>gi|261215708|ref|ZP_05929989.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260917315|gb|EEX84176.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 196
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 10 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 68 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 102
>gi|210622471|ref|ZP_03293176.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
gi|210154184|gb|EEA85190.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
Length = 189
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL PK VRP + VK + F+I+ S + LDL++G+GS
Sbjct: 1 MRVISGKARGLKLNPPKDQSVRPTTDRVKESLFNIINSY------VMDANVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+GIE +SRG F ++
Sbjct: 55 LGIECLSRGAEHCVFSDL 72
>gi|374622678|ref|ZP_09695200.1| methyltransferase [Ectothiorhodospira sp. PHS-1]
gi|373941801|gb|EHQ52346.1| methyltransferase [Ectothiorhodospira sp. PHS-1]
Length = 194
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ R ++L P G +RP + V+ F+ LQ ++ R LDL++G+G+
Sbjct: 17 LRIIGGEWRSRRLSVPDGPGLRPTPDRVRETLFNWLQPV------IQGARCLDLFAGSGA 70
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G EA SRG S V VE D V +++
Sbjct: 71 LGFEAASRGASRVVMVERDARVAAHL 96
>gi|337750102|ref|YP_004644264.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
gi|336301291|gb|AEI44394.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 194
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L S GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKSVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+ IEA+SRG + D V + NL+ GF D + ++
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVY 96
>gi|302542238|ref|ZP_07294580.1| RsmD family RNA methyltransferase [Streptomyces hygroscopicus ATCC
53653]
gi|302459856|gb|EFL22949.1| RsmD family RNA methyltransferase [Streptomyces himastatinicus ATCC
53653]
Length = 195
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLSGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG + V VE DP
Sbjct: 58 AVGLEALSRGAAHVLLVESDP 78
>gi|408529031|emb|CCK27205.1| RsmD family RNA methyltransferase [Streptomyces davawensis JCM
4913]
Length = 195
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LDGERILDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG S VE D
Sbjct: 59 AVGLEALSRGASHTLLVEAD 78
>gi|225628668|ref|ZP_03786702.1| methyltransferase [Brucella ceti str. Cudo]
gi|237816713|ref|ZP_04595705.1| methyltransferase [Brucella abortus str. 2308 A]
gi|260544387|ref|ZP_05820208.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260759651|ref|ZP_05871999.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|261216839|ref|ZP_05931120.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261319067|ref|ZP_05958264.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261319706|ref|ZP_05958903.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261753205|ref|ZP_05996914.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756374|ref|ZP_06000083.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|294853221|ref|ZP_06793893.1| RsmD family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297249904|ref|ZP_06933605.1| RsmD family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|225616514|gb|EEH13562.1| methyltransferase [Brucella ceti str. Cudo]
gi|237787526|gb|EEP61742.1| methyltransferase [Brucella abortus str. 2308 A]
gi|260097658|gb|EEW81532.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260669969|gb|EEX56909.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260921928|gb|EEX88496.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292396|gb|EEX95892.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261298290|gb|EEY01787.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261736358|gb|EEY24354.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|261742958|gb|EEY30884.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|294818876|gb|EFG35876.1| RsmD family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297173773|gb|EFH33137.1| RsmD family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 196
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 10 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+G+EA+SRG FVE + +L N+E G
Sbjct: 68 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGL 102
>gi|449131589|ref|ZP_21767799.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
gi|448938946|gb|EMB19872.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
Length = 186
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
>gi|429218232|ref|YP_007179876.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
gi|429129095|gb|AFZ66110.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
Length = 181
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++LGG A+ + L P RP ++ + FD+L S G GR+LDLY G+G+
Sbjct: 10 LRILGGTAKGRALQVPD--SARPTGARLRKSLFDLLDSRQGA------GRFLDLYGGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVV 191
VG+EA SRG +V VE +P V
Sbjct: 62 VGLEAASRGY-DVTLVERNPAAV 83
>gi|359148740|ref|ZP_09181847.1| RNA methylase [Streptomyces sp. S4]
Length = 195
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLHGGP--LDGTRVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG + VE D V +
Sbjct: 59 AVGLEALSRGAAHALIVEADARAVRTI 85
>gi|421739411|ref|ZP_16177721.1| RNA methyltransferase, RsmD family [Streptomyces sp. SM8]
gi|406692184|gb|EKC95895.1| RNA methyltransferase, RsmD family [Streptomyces sp. SM8]
Length = 195
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLHGGP--LDGTRVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG + VE D V +
Sbjct: 59 AVGLEALSRGAAHALIVEADARAVRTI 85
>gi|434380810|ref|YP_006702593.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli WesB]
gi|404429459|emb|CCG55505.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli WesB]
Length = 182
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL 195
VG EA+SRG F+E+D V +
Sbjct: 52 VGFEALSRGAKFAAFIEIDREAVKTIF 78
>gi|162456342|ref|YP_001618709.1| methylase [Sorangium cellulosum So ce56]
gi|161166924|emb|CAN98229.1| putative methylase [Sorangium cellulosum So ce56]
Length = 181
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L +P+G RP + V+ A F L G DLY+GTG+
Sbjct: 1 MRVIAGRLGGRRLAAPRGEGTRPTADRVREALFSSLGDVTGA-------LVCDLYAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+GIEA+SRG FVE +S VL NL G + + + + VE LE
Sbjct: 54 LGIEALSRGARRAVFVESGRPALS-VLRENLAALGLDEAARVVPLPVERALE 104
>gi|85708947|ref|ZP_01040013.1| N6-adenine-specific methylase [Erythrobacter sp. NAP1]
gi|85690481|gb|EAQ30484.1| N6-adenine-specific methylase [Erythrobacter sp. NAP1]
Length = 184
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R +KL++PKG RP + + F +L S G LR DL++G+G+
Sbjct: 1 MRVIAGEWRGRKLVAPKGDATRPTADRTRETLFSMLTSRLGSFEDLRVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
+G+EA+SRG + FVE + + SN+ + +D S+ ++R
Sbjct: 58 LGLEALSRGAAHCLFVEQERGALDAIRSNISALDCRSRTQVDAGSVMSLRA 108
>gi|386842766|ref|YP_006247824.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103067|gb|AEY91951.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796058|gb|AGF66107.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 195
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERALDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG V VE D
Sbjct: 59 AVGLEALSRGAGHVLLVEAD 78
>gi|58039268|ref|YP_191232.1| hypothetical protein GOX0802 [Gluconobacter oxydans 621H]
gi|58001682|gb|AAW60576.1| Hypothetical protein GOX0802 [Gluconobacter oxydans 621H]
Length = 199
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS-LRPGRWLDLYSGTG 167
++++GG + + L +P G RP + + A FD+L A L LD Y+GTG
Sbjct: 1 MRIVGGDNKGRALTAPSGTSTRPTSDRTRQAIFDMLAHAPWYGQDELEQALVLDCYAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + F+E D
Sbjct: 61 ALGLEALSRGTQKAAFIERD 80
>gi|342218580|ref|ZP_08711190.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 135-E]
gi|341589450|gb|EGS32725.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 135-E]
Length = 195
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR + L SP G RP ++ + + F+IL + SL LD+++GTG+
Sbjct: 12 VRIISGKARGRILKSPAGRLTRPTLDRTRESLFNILTAT-----SLHDTHVLDIFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + F++ +++ N + GFL+ I
Sbjct: 67 LGLEALSRGAKQGVFIDHH---TVDLIRENGKRCGFLEQMEI 105
>gi|375012032|ref|YP_004989020.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
gi|359347956|gb|AEV32375.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
Length = 185
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R +K+ +PK + VRP + K + F+IL + LDL SGTG
Sbjct: 1 MIRIISGKHRGRKIQAPKNLPVRPTTDRAKESLFNILNNH----FYFDEVTALDLCSGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
++ E SRGC ++ ++ + + + E L++ ++H R E F
Sbjct: 57 NISYELASRGCPDIIAIDDNQACIKFI----QETAEKLEMDTLHAFRAEIF 103
>gi|404418382|ref|ZP_11000149.1| N-6 adenine-specific DNA methylase [Staphylococcus arlettae CVD059]
gi|403488975|gb|EJY94553.1| N-6 adenine-specific DNA methylase [Staphylococcus arlettae CVD059]
Length = 129
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVISGVHKSKPLESMEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEA+SRG +V FV+ + + + V+ NL+ G
Sbjct: 53 LGIEALSRGMEKVIFVDQN-FKATQVIKGNLKSLGI 87
>gi|423720704|ref|ZP_17694886.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
gi|383366057|gb|EID43348.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 189
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG V FV+ D V +
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTI 80
>gi|300870865|ref|YP_003785736.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
gi|431808322|ref|YP_007235220.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli
P43/6/78]
gi|300688564|gb|ADK31235.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
gi|430781681|gb|AGA66965.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli
P43/6/78]
Length = 182
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL 195
VG EA+SRG F+E+D V +
Sbjct: 52 VGFEALSRGAKFAAFIEIDREAVKTIF 78
>gi|383450634|ref|YP_005357355.1| modification methyltransferase [Flavobacterium indicum GPTSA100-9]
gi|380502256|emb|CCG53298.1| Probable modification methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 207
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L +PK + VRP ++ K A F+IL + + + + LDL++GTG+
Sbjct: 1 MRIISGKYKGKRLQAPKNLPVRPTTDMAKEALFNILNNH----FNFQELKILDLFTGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ E SRG + + V+ D V+ + + E D+++I + V FLE+
Sbjct: 57 ISYEFASRGAAPILCVDADFGCVNYIKKISSELD--FDITAIKS-DVFKFLEK 106
>gi|336179516|ref|YP_004584891.1| methyltransferase [Frankia symbiont of Datisca glomerata]
gi|334860496|gb|AEH10970.1| methyltransferase [Frankia symbiont of Datisca glomerata]
Length = 185
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR + P G RP + + F+ L S LR R+ DLY+G+G
Sbjct: 1 MARIIGGIARGCPIRVPPGGGTRPTSDRAREGLFNTLASL----VELRGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS----SIHTVRVETFLERA 222
+VG+EA+SRG S V FV+ V L N GF V S+ V VE ERA
Sbjct: 57 AVGLEALSRGASHVLFVDRSAAAV-RTLRANAAALGFTGVEILFRSVQRV-VEIMPERA 113
>gi|296005514|ref|XP_002809077.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
gi|225632021|emb|CAX64358.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
Length = 561
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---GCPASLRPGRWLDLY 163
++L +L G + K+L SP RPMM VK + F+IL G ++ LD++
Sbjct: 339 KILSILEGTLKNKRLYSPDTY-TRPMMSKVKESIFNILTHLNILNGYNINV-----LDVF 392
Query: 164 SGTGSVGIEAISRGCSEVHFVEM 186
+G+G++GIE ISR V FV++
Sbjct: 393 TGSGNLGIECISRDVKNVTFVDL 415
>gi|452953044|gb|EME58467.1| methyltransferase [Amycolatopsis decaplanina DSM 44594]
Length = 184
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L+ AG LR + LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELRGAQVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG S FVE D
Sbjct: 55 GALGLEALSRGASGALFVESD 75
>gi|365959217|ref|YP_004940784.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
gi|365735898|gb|AEW84991.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
Length = 201
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + + R LDL+SGTG+
Sbjct: 1 MRIISGKYKGRRLVAPKNLPVRPTTDMAKESLFNILNNY----FNFNGLRVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ E +SRG V V+ D
Sbjct: 57 ISYEFLSRGAESVISVDGD 75
>gi|218283085|ref|ZP_03489180.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
gi|218216154|gb|EEC89692.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
Length = 183
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L SPK RP + +KGA F L + G +LD YSGTG+
Sbjct: 1 MRIVAGKYGSRSLKSPKNDATRPTQDKIKGAIFSSLGNI------FDGGNFLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVS 192
+G+EA+SRG V+ + +S
Sbjct: 55 MGLEAVSRGMDHATLVDNNKGAIS 78
>gi|393724293|ref|ZP_10344220.1| methyltransferase [Sphingomonas sp. PAMC 26605]
Length = 182
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L++PKG RP + V+ A F +L S G L D ++G+G+
Sbjct: 1 MRIIAGKWRGRPLVAPKGEATRPTADRVREALFSMLASRVGSFEELAVA---DFFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG + FVE D
Sbjct: 58 LGIEALSRGAASCIFVEQD 76
>gi|302392173|ref|YP_003827993.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
gi|302204250|gb|ADL12928.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
Length = 182
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK++ L S G +VRP ++ VK A F+IL P + +LDLY+G G
Sbjct: 1 MRVIAGKSKGHNLRSISGTEVRPTIDRVKEALFNIL-----GPEIIDI-DFLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+GIEA+SRG + F++ + ++ NL+ TG
Sbjct: 55 LGIEALSRGAASSTFIDNSARQIG-IIEENLKLTGL 89
>gi|282882122|ref|ZP_06290763.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
gi|281298152|gb|EFA90607.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
Length = 188
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
G+E +SRG +FV+ + NV+ N+E D S + + + LE
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKCRLKDKSKVLKMDYKKALE 105
>gi|418054267|ref|ZP_12692323.1| methyltransferase [Hyphomicrobium denitrificans 1NES1]
gi|353211892|gb|EHB77292.1| methyltransferase [Hyphomicrobium denitrificans 1NES1]
Length = 185
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L +P+ M +RP + V+ + F+IL G +L R +DL++GTG+
Sbjct: 1 MRIVAGRFRGRALAAPEDMSIRPTSDRVRESVFNILMH-GIENFTLDKVRVIDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG + FVE
Sbjct: 60 LGIEALSRGAAFCLFVE 76
>gi|114327124|ref|YP_744281.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
gi|114315298|gb|ABI61358.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
Length = 188
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++++ G+ R + L+ P G RP + V+ A FD+L A SL G LD ++GTG
Sbjct: 1 MRIVAGQWRGRALIVPPGQATRPTADRVRQALFDMLLHAPWGGRSLLDGATVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
++G+EA+SRG E +E DP
Sbjct: 61 ALGLEALSRGAKEAVLIERDP 81
>gi|72161051|ref|YP_288708.1| hypothetical protein Tfu_0647 [Thermobifida fusca YX]
gi|71914783|gb|AAZ54685.1| Conserved hypothetical protein 95 [Thermobifida fusca YX]
Length = 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L P+G RP + V+ A F + S G A LR LDLY+G+G
Sbjct: 1 MTRIIAGTAGGRRLAVPRGRTTRPTSDRVREALFASVLSELGTLAGLRV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + VE D
Sbjct: 58 AIGLEALSRGAAHALLVEAD 77
>gi|29655184|ref|NP_820876.1| methyltransferase [Coxiella burnetii RSA 493]
gi|154707129|ref|YP_001423645.1| methyltransferase [Coxiella burnetii Dugway 5J108-111]
gi|161831618|ref|YP_001597718.1| putative methyltransferase [Coxiella burnetii RSA 331]
gi|165922495|ref|ZP_02219666.1| putative methyltransferase [Coxiella burnetii Q321]
gi|29542456|gb|AAO91390.1| methyltransferase [Coxiella burnetii RSA 493]
gi|154356415|gb|ABS77877.1| methyltransferase [Coxiella burnetii Dugway 5J108-111]
gi|161763485|gb|ABX79127.1| putative methyltransferase [Coxiella burnetii RSA 331]
gi|165916700|gb|EDR35304.1| putative methyltransferase [Coxiella burnetii Q321]
Length = 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK R +K+ P D+RP + ++ F+ L + LDL++G+G+
Sbjct: 5 LRIIGGKWRSRKIDFPDLPDLRPTTDRIRETLFNWLAP------YIVDANCLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G EA+SRG ++V FV+ +VV +
Sbjct: 59 LGFEALSRGAAQVTFVDHSRYVVDKL 84
>gi|374263192|ref|ZP_09621744.1| N6-adenine specific methylase [Legionella drancourtii LLAP12]
gi|363536454|gb|EHL29896.1| N6-adenine specific methylase [Legionella drancourtii LLAP12]
Length = 181
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R KKL P +RP + V+ F+ L +R R LD ++G+G+
Sbjct: 5 IRIIGGQYRGKKLHFPNVDGLRPTPDRVRETLFNWLMH------DIRDARCLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA SRG S+V VE P +N+
Sbjct: 59 LGLEAFSRGASQVVLVEKSPQAHANL 84
>gi|312111788|ref|YP_003990104.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|336236171|ref|YP_004588787.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
gi|311216889|gb|ADP75493.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|335363026|gb|AEH48706.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
Length = 196
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 8 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG V FV+ D V +
Sbjct: 62 LGIEALSRGLDRVIFVDHDAKAVQTI 87
>gi|406838600|ref|ZP_11098194.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus vini
DSM 20605]
Length = 147
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +KL + G RP + VK + F++L G A G+ LDLY+G+GS
Sbjct: 1 MRVISGKYRGRKLKAVPGQLTRPTTDKVKESVFNML---GNSLA----GQVLDLYAGSGS 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG + V+ V +
Sbjct: 54 LGIEAVSRGAQQAILVDRQFQAVKTI 79
>gi|212211676|ref|YP_002302612.1| methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010086|gb|ACJ17467.1| methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 194
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK R +K+ P D+RP + ++ F+ L + LDL++G+G+
Sbjct: 5 LRIIGGKWRSRKIDFPDLPDLRPTTDRIRETLFNWLAP------YIVDANCLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G EA+SRG ++V FV+ +VV +
Sbjct: 59 LGFEALSRGAAQVTFVDHSRYVVDKL 84
>gi|144897622|emb|CAM74486.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 181
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + + L +P G RP + + A F+IL + L R +D ++G+G+
Sbjct: 1 MRIVGGKHKGRVLTAPDGRVARPTADRARQALFNILAHSD--LVELDGARVVDCFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG + V F+E P
Sbjct: 59 LGLEALSRGAAHVSFIESHP 78
>gi|357032030|ref|ZP_09093970.1| N6-adenine-specific methylase [Gluconobacter morbifer G707]
gi|356414257|gb|EHH67904.1| N6-adenine-specific methylase [Gluconobacter morbifer G707]
Length = 199
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCP-ASLRPGRWLDLYSGTG 167
++++GG+ + + L++P G RP + + A FD+L A L LD Y+GTG
Sbjct: 1 MRIVGGENKGRALVAPNGNSTRPTSDRTRQAIFDMLAHAPWYGREELEQAIVLDAYAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG F+E D
Sbjct: 61 ALGLEALSRGAIRASFIERD 80
>gi|297559190|ref|YP_003678164.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296843638|gb|ADH65658.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +++ P+G + RP + + A F +QS G SL R +DLY+G+G
Sbjct: 1 MTRIIAGTAGGRRISVPEGRNTRPTSDRAREALFSSVQSDLG---SLDGARVMDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
++G+EA+SRG + VE D + VL N++ G
Sbjct: 58 AIGLEALSRGAAHALLVEADR-RAAQVLRDNIQTLGL 93
>gi|389798091|ref|ZP_10201118.1| RsmD family RNA methyltransferase [Rhodanobacter sp. 116-2]
gi|388445746|gb|EIM01804.1| RsmD family RNA methyltransferase [Rhodanobacter sp. 116-2]
Length = 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R +L P +RP E V+ F+ L + R LDL +GTG+
Sbjct: 12 IRIIGGSLRNSRLEVPNLPGLRPTAERVRETLFNWLAPV------IDGARCLDLCAGTGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
+GIEA+SRG + V FVE D + L NL D + + E FL Q C
Sbjct: 66 LGIEALSRGAAAVQFVERDA-RAAQALRANLARLK-ADGGQVAALEAEAFLRGTAQPC 121
>gi|383649286|ref|ZP_09959692.1| DNA methylase [Streptomyces chartreusis NRRL 12338]
Length = 195
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG VE D V V
Sbjct: 59 AVGLEALSRGAGHTLLVEADAKAVRTV 85
>gi|227872674|ref|ZP_03991004.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
gi|227841488|gb|EEJ51788.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
Length = 194
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L P+G D RP + +K F+ILQ L LDL++G+G+
Sbjct: 8 MRVIAGSARRLLLSVPEGKDTRPTTDRIKETLFNILQF------DLVDQDVLDLFAGSGA 61
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG F +
Sbjct: 62 LGIEALSRGAKRAVFCD 78
>gi|402833612|ref|ZP_10882225.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
gi|402280105|gb|EJU28875.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
Length = 199
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL + R LDL++GTG+
Sbjct: 1 MRIITGTARGCRLKTPKGEATRPTADRIKESLFNILGR------RVEEARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG + FV+
Sbjct: 55 LGLEALSRGAASALFVD 71
>gi|352085401|ref|ZP_08953021.1| methyltransferase [Rhodanobacter sp. 2APBS1]
gi|351681822|gb|EHA64936.1| methyltransferase [Rhodanobacter sp. 2APBS1]
Length = 193
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R +L P +RP E V+ F+ L + R LDL +GTG+
Sbjct: 12 IRIIGGSLRNSRLEVPNLPGLRPTAERVRETLFNWLAPV------IDGARCLDLCAGTGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFC 226
+GIEA+SRG + V FVE D + L NL D + + E FL Q C
Sbjct: 66 LGIEALSRGAAAVQFVERDA-RAAQALRANLARLK-ADGGQVAALEAEAFLRGTAQPC 121
>gi|164685864|ref|ZP_01947517.2| putative methyltransferase [Coxiella burnetii 'MSU Goat Q177']
gi|212217694|ref|YP_002304481.1| methyltransferase [Coxiella burnetii CbuK_Q154]
gi|164601381|gb|EAX31863.2| putative methyltransferase [Coxiella burnetii 'MSU Goat Q177']
gi|212011956|gb|ACJ19336.1| methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 193
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK R +K+ P D+RP + ++ F+ L + LDL++G+G+
Sbjct: 5 LRIIGGKWRSRKIDFPDLPDLRPTTDRIRETLFNWLAP------YIVDANCLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G EA+SRG ++V FV+ +VV +
Sbjct: 59 LGFEALSRGAAQVTFVDHSRYVVDKL 84
>gi|406983082|gb|EKE04331.1| hypothetical protein ACD_20C00086G0021 [uncultured bacterium]
Length = 185
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW--LDLYSGT 166
+ + GG +R+K+ + + +VRP V+ + F+I+QS L G LDL++G+
Sbjct: 1 MLITGGFLKRRKINTVESKEVRPTSSKVRESIFNIIQSNSDI---LHHGDAVVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVS 192
G +G+EA SRG +V +VE +P VS
Sbjct: 58 GILGLEAYSRGAKKVIYVEKNPNAVS 83
>gi|375099392|ref|ZP_09745655.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
gi|374660124|gb|EHR60002.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
Length = 185
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G++G+EA+SRG E FVE D +++L N+ G V + RVE +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVEAVV 104
>gi|317050822|ref|YP_004111938.1| methyltransferase [Desulfurispirillum indicum S5]
gi|316945906|gb|ADU65382.1| methyltransferase [Desulfurispirillum indicum S5]
Length = 182
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +L +PKG VRP + V+ F++L +L+ R+LDL+ G+G+
Sbjct: 1 MRIISGTRRGMRLSAPKGDAVRPTADAVRENLFNLLGQ------NLQGKRFLDLFGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VG+EA SRG S V VE P + V
Sbjct: 55 VGLEAASRGASVV-IVEKSPLALRCV 79
>gi|345859729|ref|ZP_08812063.1| hypothetical protein DOT_3516 [Desulfosporosinus sp. OT]
gi|344327186|gb|EGW38630.1| hypothetical protein DOT_3516 [Desulfosporosinus sp. OT]
Length = 183
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +G RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGTLTRPTSDKVKGAIFNVLGD------KVLDARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
+ IEA+SRG E VE V+ NLE G
Sbjct: 55 LAIEALSRGSREAVLVE-KSLNAHKVICENLEKVG 88
>gi|345009580|ref|YP_004811934.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
gi|344035929|gb|AEM81654.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
Length = 195
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLDGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG V VE DP
Sbjct: 58 AVGLEALSRGAGHVLLVESDP 78
>gi|228470077|ref|ZP_04054986.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228308215|gb|EEK17070.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 186
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R++L PKG+ +RP ++ K A F+ L + + R LDL++G GS
Sbjct: 1 MRIIAGKYGRRRLSPPKGLTLRPTTDIAKEALFNSLSAQ----YDVEGMRVLDLFAGIGS 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ +E +SRG + V +E P
Sbjct: 57 ISLEFVSRGAASVTSIEKHP 76
>gi|315038076|ref|YP_004031644.1| methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|312276209|gb|ADQ58849.1| Methyltransferase [Lactobacillus amylovorus GRL 1112]
Length = 183
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFNG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAE 223
++GIEA+SRGC V+++ S ++ N+ T + I+ +R ++ F E+
Sbjct: 54 ALGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAALKLFAEKEL 112
Query: 224 QF 225
+F
Sbjct: 113 KF 114
>gi|347750629|ref|YP_004858194.1| methyltransferase [Bacillus coagulans 36D1]
gi|347583147|gb|AEO99413.1| methyltransferase [Bacillus coagulans 36D1]
Length = 198
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ + + V NLE FL S ++
Sbjct: 55 LGIEALSRGMEKVIFVDKEIQALQTVR-ANLEKCDFLGRSEVY 96
>gi|374603388|ref|ZP_09676368.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
gi|374390984|gb|EHQ62326.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
Length = 187
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G AR + L GM RP + VK A F ++ GR LDL++GTG +G
Sbjct: 1 MISGTARGRTLKPVPGMGTRPTTDKVKEALFSMIGP------YFEGGRALDLFAGTGGLG 54
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
IEA+SRG F++ D + V+ NL TG D + ++
Sbjct: 55 IEALSRGAEWAVFIDKDARAI-EVVRGNLTATGLADKAEVY 94
>gi|326382848|ref|ZP_08204538.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
gi|326198438|gb|EGD55622.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
Length = 181
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L P RP + V+ A F +L G L R LDLY+GTG
Sbjct: 1 MTRIIAGEFRGRRLAVPADT-TRPTSDRVREAVFSML----GSRMDLSEARVLDLYAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
++GIEA+SRG + VE D + VL N+ G I VE+FL
Sbjct: 56 ALGIEAVSRGAASAVLVEADRR-AAGVLRDNVAVCGAAAQVRIVNRSVESFL 106
>gi|313885896|ref|ZP_07819636.1| RNA methyltransferase, RsmD family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924651|gb|EFR35420.1| RNA methyltransferase, RsmD family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 186
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R++L PKG+ +RP ++ K A F+ L + R LDL++G GS
Sbjct: 1 MRIIAGKYGRRRLSPPKGLTLRPTTDIAKEALFNSLSAQYDVEGV----RVLDLFAGIGS 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ +E +SRG + V +E P
Sbjct: 57 ISLEFVSRGAASVTSIEKHP 76
>gi|300781317|ref|ZP_07091171.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300533024|gb|EFK54085.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 195
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 110 QVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR +K+ + P+G RP + K F LQ G R LDL+SG+G+
Sbjct: 3 RIISGEARGRKIKVPPEG--TRPTSDRAKEGLFSSLQVRFGFVGK----RVLDLFSGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+G+EA SRG EV VE DP V ++ N + G +V I V+ ++ RA
Sbjct: 57 LGLEAASRGADEVVLVESDPKAV-EIIKHNAQAVGHPNV-HIEPVKASAYVPRA 108
>gi|406883517|gb|EKD31090.1| methyltransferase [uncultured bacterium]
Length = 178
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R K++L P RP + K F+IL + LDL+SGTGS
Sbjct: 1 MRIIGGELRGKQILPPSNYKARPTTDFAKEGLFNILSNQ----YDFSELSVLDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ E SRGC + VEM+
Sbjct: 57 ISFEFASRGCPMITSVEMN 75
>gi|430750360|ref|YP_007213268.1| RsmD family RNA methyltransferase [Thermobacillus composti KWC4]
gi|430734325|gb|AGA58270.1| RNA methyltransferase, RsmD family [Thermobacillus composti KWC4]
Length = 197
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + GM+ RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVIAGTAKGTPLRAVPGMNTRPTTDKVKEAIFSMIGP------YFDGGAALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GIEA+SRG F++ D V+ V+ N E + S I+ E L
Sbjct: 55 LGIEALSRGADRAVFIDADRQAVA-VIRRNAEAARMAERSEIYCNTAERAL 104
>gi|238924039|ref|YP_002937555.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|238875714|gb|ACR75421.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|291524775|emb|CBK90362.1| RNA methyltransferase, RsmD family [Eubacterium rectale DSM 17629]
gi|291528904|emb|CBK94490.1| RNA methyltransferase, RsmD family [Eubacterium rectale M104/1]
Length = 183
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++++ G AR L + +G D RP + K F+++Q PG + LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGKDTRPTTDKTKETLFNVMQFD-------VPGAYFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + FVE + ++ + N+ +T F VS +
Sbjct: 54 QIGLEALSRGAAYAVFVE-NSRKAASCIEDNIHFTKFDKVSRL 95
>gi|256842912|ref|ZP_05548400.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|293381233|ref|ZP_06627240.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295692717|ref|YP_003601327.1| methyltransferase [Lactobacillus crispatus ST1]
gi|423317777|ref|ZP_17295674.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
gi|423321115|ref|ZP_17298987.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|256614332|gb|EEU19533.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|290922201|gb|EFD99196.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295030823|emb|CBL50302.1| Methyltransferase [Lactobacillus crispatus ST1]
gi|405596438|gb|EKB69774.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|405597836|gb|EKB71086.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
Length = 182
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L + G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FQGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRGC V+++ + ++ N+ T +++ +R ++ F E E+
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAALKLFSENDEK 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|239826501|ref|YP_002949125.1| methyltransferase [Geobacillus sp. WCH70]
gi|239806794|gb|ACS23859.1| methyltransferase [Geobacillus sp. WCH70]
Length = 189
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + G+ RP + VK A F+++ G LDL+SG+G
Sbjct: 1 MRVISGKCKGRRLQAVPGISTRPTTDKVKEAIFNMV------GPYFSGGMGLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG V FV+ D V V
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTV 80
>gi|384262996|ref|YP_005418184.1| hypothetical protein RSPPHO_02588 [Rhodospirillum photometricum DSM
122]
gi|378404098|emb|CCG09214.1| Putative uncharacterized protein [Rhodospirillum photometricum DSM
122]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSGT 166
++++ G+ R + L P G+ VRP + +GA F+I+ G SL+ R LD ++G+
Sbjct: 19 MRIVAGRWRGRTLAVPPGLGVRPTGDRARGAVFNIVTHRFEGRDGFSLKDARVLDAFAGS 78
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+S+G + F E D
Sbjct: 79 GALGLEALSQGAASATFFETD 99
>gi|430746614|ref|YP_007205743.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430018334|gb|AGA30048.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 202
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ G+ R K PKG RP ++V+ + F+IL +S G +DL++GTG
Sbjct: 1 MRIIAGQRRGHKFDGPKGKATRPTSDLVRESLFNILGESIEGLLV-------IDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
+VG+EA+SRG S FVE
Sbjct: 54 AVGLEALSRGASHAIFVE 71
>gi|453331597|dbj|GAC86511.1| N6 adenine-specific DNA methylase [Gluconobacter thailandicus NBRC
3255]
Length = 199
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGTG 167
++++GG+ + + L++P G RP + + A FD+L A L LD Y+GTG
Sbjct: 1 MRIVGGENKGRALVAPTGERTRPTSDRTRQAIFDMLAHAPWYGQEELEQAIVLDGYAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
++G+EA+SRG F+E D + N L NL+
Sbjct: 61 ALGLEALSRGAQRASFIERDRNAL-NALRTNLD 92
>gi|307244230|ref|ZP_07526345.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
gi|306492380|gb|EFM64418.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
Length = 186
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P VRP + VK + F+I+Q + + LDL++G+G+
Sbjct: 1 MRVISGSARGLKLNTPSDDRVRPTTDRVKESMFNIIQD------RVYDSQVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG S+ F +
Sbjct: 55 LGIEALSRGASQAVFCD 71
>gi|300814523|ref|ZP_07094779.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511350|gb|EFK38594.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 188
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
G+E +SRG +FV+ + NV+ N+E D S + + + LE
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKRRLKDKSKVLKMDYKKALE 105
>gi|293372275|ref|ZP_06618660.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CMC 3f]
gi|336415612|ref|ZP_08595951.1| RsmD family RNA methyltransferase [Bacteroides ovatus 3_8_47FAA]
gi|423294724|ref|ZP_17272851.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
gi|292632717|gb|EFF51310.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CMC 3f]
gi|335940491|gb|EGN02358.1| RsmD family RNA methyltransferase [Bacteroides ovatus 3_8_47FAA]
gi|392675915|gb|EIY69356.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
Length = 177
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V +E DP
Sbjct: 58 ISIELVSRGCDHVISIEKDP 77
>gi|414160417|ref|ZP_11416685.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878315|gb|EKS26200.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 183
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + K L S +G + RP + VK + F+ L G LDL++G+G+
Sbjct: 1 MRVISGQHKSKPLESLQGRNTRPTTDKVKESIFNTLHDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG E+ FV+ + V V+ NL + + ++
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVK-VIKANLNSLDLMKQAEVY 94
>gi|336113675|ref|YP_004568442.1| methyltransferase [Bacillus coagulans 2-6]
gi|335367105|gb|AEH53056.1| methyltransferase [Bacillus coagulans 2-6]
Length = 198
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ D + V NL GF S ++
Sbjct: 55 LGIEALSRGMEKVIFVDKDIQALQTVQ-ANLAKCGFEGRSEVY 96
>gi|270294511|ref|ZP_06200713.1| RsmD family RNA methyltransferase [Bacteroides sp. D20]
gi|423305258|ref|ZP_17283257.1| RsmD family RNA methyltransferase [Bacteroides uniformis
CL03T00C23]
gi|423311076|ref|ZP_17289045.1| RsmD family RNA methyltransferase [Bacteroides uniformis
CL03T12C37]
gi|270275978|gb|EFA21838.1| RsmD family RNA methyltransferase [Bacteroides sp. D20]
gi|392680108|gb|EIY73482.1| RsmD family RNA methyltransferase [Bacteroides uniformis
CL03T12C37]
gi|392681880|gb|EIY75236.1| RsmD family RNA methyltransferase [Bacteroides uniformis
CL03T00C23]
Length = 177
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + +R LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHSFKARPTTDFAKENLFNVLSNYMDFEDGIRA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IE +SRGC +V VE D
Sbjct: 58 ISIELVSRGCDQVISVEKD 76
>gi|158424015|ref|YP_001525307.1| hypothetical protein AZC_2391 [Azorhizobium caulinodans ORS 571]
gi|158330904|dbj|BAF88389.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 187
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +P RP + ++ + F++L A G A R LDL++GTG+
Sbjct: 1 MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAAD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAVFALFVE 75
>gi|386725726|ref|YP_006192052.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384092851|gb|AFH64287.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 196
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+ IEA+SRG + D V + NL+ GF D + ++
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVY 96
>gi|414342377|ref|YP_006983898.1| hypothetical protein B932_1385 [Gluconobacter oxydans H24]
gi|411027712|gb|AFW00967.1| hypothetical protein B932_1385 [Gluconobacter oxydans H24]
Length = 199
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGTG 167
++++GG+ + + L++P G RP + + A FD+L A L LD Y+GTG
Sbjct: 1 MRIVGGENKGRALVAPTGERTRPTSDRTRQAIFDMLAHAPWYGQEELEQAIVLDGYAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
++G+EA+SRG F+E D + N L NL+
Sbjct: 61 ALGLEALSRGAQRAAFIERDRNAL-NALRTNLD 92
>gi|379722944|ref|YP_005315075.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
gi|378571616|gb|AFC31926.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
Length = 194
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+ IEA+SRG + D V + NL+ GF D + ++
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVY 96
>gi|330444155|ref|YP_004377141.1| methyltransferase [Chlamydophila pecorum E58]
gi|328807265|gb|AEB41438.1| methyltransferase, putative [Chlamydophila pecorum E58]
Length = 184
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + + L + +RP +VK + F+I C L +LDL++G GS
Sbjct: 1 MRILAGKYKGRSLKTFSERSIRPTCGLVKESLFNI------CAVYLEGADFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG S V FV+
Sbjct: 55 IGFEALSRGASRVVFVD 71
>gi|374986252|ref|YP_004961747.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
gi|297156904|gb|ADI06616.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 195
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SLR R LDLY G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLRGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG V VE D
Sbjct: 58 AVGLEALSRGAEHVLLVESD 77
>gi|195941937|ref|ZP_03087319.1| hypothetical protein Bbur8_03561 [Borrelia burgdorferi 80a]
gi|387827122|ref|YP_005806404.1| putative methyltransferase [Borrelia burgdorferi N40]
gi|312149513|gb|ADQ29584.1| putative methyltransferase [Borrelia burgdorferi N40]
Length = 165
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + ++LD+++GTG + +EA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGIMSVEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
H VE + + L+ N + G + R E FL + + F
Sbjct: 55 HLVECNRK-IKITLVENFSFVG--EFYKFFFQRAEDFLSKKDLF 95
>gi|410944388|ref|ZP_11376129.1| hypothetical protein GfraN1_08082 [Gluconobacter frateurii NBRC
101659]
Length = 199
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGTG 167
++++GG+ + + L++P G RP + + A FD+L A L LD Y+GTG
Sbjct: 1 MRIVGGENKGRALVAPTGERTRPTSDRTRQAIFDMLAHAPWYGQEELEQAIVLDGYAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
++G+EA+SRG F+E D + N L NL+
Sbjct: 61 ALGLEALSRGAQRAAFIERDRNAL-NALRTNLD 92
>gi|407775433|ref|ZP_11122727.1| putative methyltransferase [Thalassospira profundimaris WP0211]
gi|407281440|gb|EKF07002.1| putative methyltransferase [Thalassospira profundimaris WP0211]
Length = 189
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS----LRPGRWLDLYS 164
++++GG R + L +P+G D RP ++ V+ A F IL A L G LD ++
Sbjct: 1 MRIVGGTHRGRLLNAPEGRDTRPTLDRVREALFSILSHASRWYEDDFNPLFDGVILDAFA 60
Query: 165 GTGSVGIEAISRGCSEVHFVEMD 187
G+G++G+EAISRG F + D
Sbjct: 61 GSGALGLEAISRGAERAVFFDND 83
>gi|323352768|ref|ZP_08087738.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis VMC66]
gi|322121804|gb|EFX93550.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis VMC66]
Length = 182
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 3 FMRVVAGKYGGRSLKTLDGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG E VE D
Sbjct: 57 SLAIEAISRGMEEAVLVEKD 76
>gi|256823778|ref|YP_003147741.1| methyltransferase [Kangiella koreensis DSM 16069]
gi|256797317|gb|ACV27973.1| methyltransferase [Kangiella koreensis DSM 16069]
Length = 203
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+V+GG+ + +KL + +RP ++ ++ F+ LQ+ + LDL++G+G+
Sbjct: 26 FRVIGGRWKGRKLRFIEVEGLRPSLDRIRETLFNWLQN------EIHGANCLDLFAGSGA 79
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG SE FVE++
Sbjct: 80 IGIEALSRGASEASFVELN 98
>gi|254784499|ref|YP_003071927.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
gi|237685959|gb|ACR13223.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
Length = 191
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
+ Q + + L+++GG+ R +KL +RP + V+ F+ L A PG
Sbjct: 2 QRQSKNSQKSSLRIIGGQWRGRKLSIADAEGLRPTGDRVRETLFNWL-------APWLPG 54
Query: 158 -RWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
R LDL++GTG++G+EA+SRG + F+E +P
Sbjct: 55 ARCLDLFAGTGALGLEALSRGAAHTTFIETNP 86
>gi|160891231|ref|ZP_02072234.1| hypothetical protein BACUNI_03679 [Bacteroides uniformis ATCC 8492]
gi|317481117|ref|ZP_07940194.1| RsmD family RNA methyltransferase [Bacteroides sp. 4_1_36]
gi|156859452|gb|EDO52883.1| RNA methyltransferase, RsmD family [Bacteroides uniformis ATCC
8492]
gi|316902718|gb|EFV24595.1| RsmD family RNA methyltransferase [Bacteroides sp. 4_1_36]
Length = 177
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + +R LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHSFKARPTTDFAKENLFNVLSNYMDFEDGIRA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IE +SRGC +V VE D
Sbjct: 58 ISIELVSRGCDQVISVEKD 76
>gi|403515269|ref|YP_006656089.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
gi|403080707|gb|AFR22285.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
Length = 182
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRG V+++ S ++ N+ T + S++ +R ++ F E E+
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENRFSVYNMRSNAALKLFAENQEK 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|424781003|ref|ZP_18207869.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
gi|422842423|gb|EKU26875.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
Length = 185
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R ++L S +G RP + VK A F ++ G LDLYSG+G
Sbjct: 1 MRVIAGEYRGRRLKSLEGKQTRPTTDKVKEAVFSMI------GPYFDGGTCLDLYSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+ IEA+SRG E + ++ + V+ N+E G D + I
Sbjct: 55 LAIEALSRGMKEAYCIDHHYQAI-KVIKENMELVGCADRAVI 95
>gi|29829212|ref|NP_823846.1| RNA methylase [Streptomyces avermitilis MA-4680]
gi|29606318|dbj|BAC70381.1| putative RNA methylase [Streptomyces avermitilis MA-4680]
Length = 195
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGRAGGRRLAVPPGNGTRPTSDRAREGLFSTWQALLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG VE D V V
Sbjct: 59 AVGLEALSRGAGHTLLVEADTRAVRTV 85
>gi|78356825|ref|YP_388274.1| methyltransferase [Desulfovibrio alaskensis G20]
gi|78219230|gb|ABB38579.1| methyltransferase [Desulfovibrio alaskensis G20]
Length = 189
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L + G RP M V+ A F +L++ G R LDL++G+GS
Sbjct: 1 MKIISGEYGGRTLKTTVGPGYRPAMAKVRKALFSMLEARG---VHWSECRVLDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
G EA+SRG +E FVE +P V V+ N E + + R + F E +F R
Sbjct: 58 CGFEALSRGAAEGWFVESNPAAV-KVIRSNAE------LLKVEAARWQVFHEDVSKFLR 109
>gi|380693739|ref|ZP_09858598.1| putative methyltransferase [Bacteroides faecis MAJ27]
Length = 177
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V VE DP
Sbjct: 58 ISIELVSRGCDRVISVEKDP 77
>gi|227877353|ref|ZP_03995424.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256848713|ref|ZP_05554147.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|262045879|ref|ZP_06018843.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
gi|227863021|gb|EEJ70469.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256714252|gb|EEU29239.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|260573838|gb|EEX30394.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
Length = 182
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRGC V+++ + ++ N+ T +++ +R ++ F E E+
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAALKLFSENDEK 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|187918079|ref|YP_001883642.1| methyltransferase [Borrelia hermsii DAH]
gi|119860927|gb|AAX16722.1| methyltransferase [Borrelia hermsii DAH]
Length = 190
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
L+ V GK + K+ PK VRP+M +V+ A F I+ Q G +LD+++G
Sbjct: 9 LMHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIIFNQIVGSS--------FLDVFAG 60
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
TG + +EA+SRG S H V+ + S VLI N E
Sbjct: 61 TGIMSLEALSRGASLAHLVDYNKSSKS-VLIKNFE 94
>gi|49475073|ref|YP_033114.1| hypothetical protein BH02620 [Bartonella henselae str. Houston-1]
gi|49237878|emb|CAF27074.1| hypothetical protein BH02620 [Bartonella henselae str. Houston-1]
Length = 189
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L +P G +RP + + + F+I S G R LDL++GTG+
Sbjct: 1 MRVVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNIFASQEG--QFWVNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|198276115|ref|ZP_03208646.1| hypothetical protein BACPLE_02303 [Bacteroides plebeius DSM 17135]
gi|198270927|gb|EDY95197.1| putative RNA methyltransferase, RsmD family [Bacteroides plebeius
DSM 17135]
Length = 188
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLNNYIDFEDGITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC +V VE DP
Sbjct: 58 ISIELVSRGCDQVISVEKDP 77
>gi|384146946|ref|YP_005529762.1| methyltransferase [Amycolatopsis mediterranei S699]
gi|340525100|gb|AEK40305.1| methyltransferase [Amycolatopsis mediterranei S699]
Length = 186
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L +AG L R LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALGTAG----ELDGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG ++ FVE D
Sbjct: 55 GALGLEALSRGAADALFVESD 75
>gi|189460011|ref|ZP_03008796.1| hypothetical protein BACCOP_00646 [Bacteroides coprocola DSM 17136]
gi|189433261|gb|EDV02246.1| putative RNA methyltransferase, RsmD family [Bacteroides coprocola
DSM 17136]
Length = 176
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLNNY----IDFEGTTVLDLFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V VE DP
Sbjct: 57 ISIELVSRGCERVISVEKDP 76
>gi|319403674|emb|CBI77259.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
Length = 185
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L P G+ +RP + + + F+IL S R R LDL++GTG+
Sbjct: 1 MRVIGGKFSGRILAKPLGLSIRPTTDRTRESLFNILTSREENFWVNR--RVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKTAVFVE 75
>gi|167769118|ref|ZP_02441171.1| hypothetical protein ANACOL_00441 [Anaerotruncus colihominis DSM
17241]
gi|167668758|gb|EDS12888.1| RNA methyltransferase, RsmD family [Anaerotruncus colihominis DSM
17241]
Length = 183
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+G RP ++ K A F IL L LDL++G+G
Sbjct: 1 MRVITGTARGTRLEAPEGQQTRPTSDMAKEAVFSILHF------ELAGAAVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GIEA+SRG FV+ V+ NL + + + +FL
Sbjct: 55 LGIEALSRGAKSCVFVD-HSRAAQEVIRRNLAAAKLTPLGRVAAMDASSFL 104
>gi|407784177|ref|ZP_11131359.1| methyltransferase [Oceanibaculum indicum P24]
gi|407198033|gb|EKE68077.1| methyltransferase [Oceanibaculum indicum P24]
Length = 186
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +L +P G RP + + A FD L + G L LDL++GTG+
Sbjct: 1 MRIVAGRHRGARLEAPPGESTRPTSDRARQALFDTL-TGGRFDIDLNGAVVLDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 60 LGLEALSRGAARAIFVEKD 78
>gi|407794528|ref|ZP_11141553.1| N-6 adenine-specific DNA methylase [Idiomarina xiamenensis 10-D-4]
gi|407211594|gb|EKE81461.1| N-6 adenine-specific DNA methylase [Idiomarina xiamenensis 10-D-4]
Length = 195
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++GG+ R ++L +RP + V+ F+ LQ +R R LDL++G+GS
Sbjct: 13 FRIIGGQWRGRRLAIADSEGLRPTTDRVRETLFNWLQF------DIRGARCLDLFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFCR 227
+G+EA+SRG + V VE P V+ L +L+ ++H+ + E A Q +
Sbjct: 67 LGLEALSRGAASVTMVEKAP-AVARQLKQHLQ--------TLHSAQAEVVQSDALQLLQ 116
>gi|390940251|ref|YP_006403988.1| RsmD family RNA methyltransferase [Sulfurospirillum barnesii SES-3]
gi|390193358|gb|AFL68413.1| RNA methyltransferase, RsmD family [Sulfurospirillum barnesii
SES-3]
Length = 191
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ GK + KKL+ P R ++KG+ FD LQ + +++++ G+GS+G
Sbjct: 10 IVAGKYKGKKLMLPSLESTRSTKAILKGSLFDTLQY------DIVDEVFVEVFGGSGSMG 63
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+EA+SRG +F+E D +L N E + +++H
Sbjct: 64 LEALSRGAKHAYFIEKDKAAF-GILKRNCEAIDTMHTTALH 103
>gi|384084423|ref|ZP_09995598.1| methyltransferase, putative [Acidithiobacillus thiooxidans ATCC
19377]
Length = 183
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G+ R ++LL+P VRP VV+ F+ L GG A R LDL++G+G+
Sbjct: 3 VSIIAGRHRGRRLLTPSDSGVRPTPGVVRERLFNWL---GGVVAGARV---LDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA SR EV FVE +P
Sbjct: 57 LGLEAWSRDAKEVVFVEKNP 76
>gi|160886626|ref|ZP_02067629.1| hypothetical protein BACOVA_04638 [Bacteroides ovatus ATCC 8483]
gi|156107037|gb|EDO08782.1| putative RNA methyltransferase, RsmD family [Bacteroides ovatus
ATCC 8483]
Length = 177
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEERITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V +E DP
Sbjct: 58 ISIELVSRGCDRVISIEKDP 77
>gi|29349387|ref|NP_812890.1| methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|298384915|ref|ZP_06994474.1| methyltransferase [Bacteroides sp. 1_1_14]
gi|383120315|ref|ZP_09941044.1| RsmD family RNA methyltransferase [Bacteroides sp. 1_1_6]
gi|29341296|gb|AAO79084.1| putative methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|251840643|gb|EES68725.1| RsmD family RNA methyltransferase [Bacteroides sp. 1_1_6]
gi|298262059|gb|EFI04924.1| methyltransferase [Bacteroides sp. 1_1_14]
Length = 177
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V VE DP
Sbjct: 58 ISIELVSRGCDRVISVEKDP 77
>gi|153941224|ref|YP_001391790.1| methyltransferase [Clostridium botulinum F str. Langeland]
gi|384462799|ref|YP_005675394.1| RsmD family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152937120|gb|ABS42618.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
Langeland]
gi|295319816|gb|ADG00194.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
230613]
Length = 185
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEW 201
+G+EA SRG + V E P + N I NL++
Sbjct: 55 LGLEAASRGAKFSYLVDKSSETYPLLREN--IKNLKF 89
>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
Length = 204
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G +GIEA+SRG V FV+ D V V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTV 86
>gi|385817418|ref|YP_005853808.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
gi|327183356|gb|AEA31803.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
Length = 183
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFNG-------GDVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAE 223
++GIEA+SRGC V+++ S ++ N+ T + I+ +R ++ F E+
Sbjct: 54 ALGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAALKLFAEKEL 112
Query: 224 QF 225
+F
Sbjct: 113 KF 114
>gi|237719230|ref|ZP_04549711.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262408275|ref|ZP_06084822.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_22]
gi|294645382|ref|ZP_06723091.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CC 2a]
gi|294806158|ref|ZP_06765010.1| RNA methyltransferase, RsmD family [Bacteroides xylanisolvens SD CC
1b]
gi|299148289|ref|ZP_07041351.1| putative methyltransferase [Bacteroides sp. 3_1_23]
gi|336403908|ref|ZP_08584615.1| hypothetical protein HMPREF0127_01928 [Bacteroides sp. 1_1_30]
gi|345510276|ref|ZP_08789844.1| hypothetical protein BSAG_03111 [Bacteroides sp. D1]
gi|423212102|ref|ZP_17198631.1| RsmD family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
gi|423292533|ref|ZP_17271111.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
gi|229445609|gb|EEO51400.1| hypothetical protein BSAG_03111 [Bacteroides sp. D1]
gi|229451609|gb|EEO57400.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262353827|gb|EEZ02920.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_22]
gi|292639274|gb|EFF57583.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CC 2a]
gi|294446672|gb|EFG15287.1| RNA methyltransferase, RsmD family [Bacteroides xylanisolvens SD CC
1b]
gi|298513050|gb|EFI36937.1| putative methyltransferase [Bacteroides sp. 3_1_23]
gi|335944581|gb|EGN06400.1| hypothetical protein HMPREF0127_01928 [Bacteroides sp. 1_1_30]
gi|392661614|gb|EIY55194.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
gi|392694990|gb|EIY88215.1| RsmD family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
Length = 177
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V +E DP
Sbjct: 58 ISIELVSRGCDRVISIEKDP 77
>gi|407477666|ref|YP_006791543.1| hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
gi|407061745|gb|AFS70935.1| Hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
Length = 189
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++ + G RP + VK + F+++ G+ LDL++G+G
Sbjct: 1 MRVISGERKGMRIKAVPGDQTRPTTDKVKESLFNVI------GPYFNGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRGC E FV+ V + NLE T D S +
Sbjct: 55 LGIEALSRGCDEAVFVDQSFKAVQTIK-ENLETTRLTDRSRV 95
>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
Length = 204
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G +GIEA+SRG V FV+ D V V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTV 86
>gi|227499433|ref|ZP_03929544.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
gi|227218495|gb|EEI83738.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
Length = 187
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ GK + LLSPK RP VK A FD+L +P LDL+SGTG
Sbjct: 1 MRVVAGKYKGFNLLSPKVNSSRPTDNKVKEAIFDML-------FPYKPDFVALDLFSGTG 53
Query: 168 SVGIEAISRGCSEVHFVE 185
+GIE +SRG EV+F E
Sbjct: 54 QMGIEFLSRGAREVYFNE 71
>gi|42522213|ref|NP_967593.1| hypothetical protein Bd0622 [Bdellovibrio bacteriovorus HD100]
gi|39574744|emb|CAE78586.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 199
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++ +RP + VK F+ LQ + R +DL+ GTG+
Sbjct: 1 MRIIAGKYRGHQLVAFDADHIRPTTDRVKETLFNKLQF------DIDGARVVDLFCGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG FVE +P
Sbjct: 55 LGIEALSRGAEFCTFVEKNP 74
>gi|311029899|ref|ZP_07707989.1| putative methyltransferase [Bacillus sp. m3-13]
Length = 228
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM+ RP + VK + F+++ G LDL+ G+GS
Sbjct: 39 MRVVSGKWKGRQLKAVPGMNTRPTTDKVKESVFNMI------GPYFDGGLALDLFGGSGS 92
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG +V FV+ D + +
Sbjct: 93 LGIEALSRGVDKVIFVDKDGKAIQTI 118
>gi|311113804|ref|YP_003985026.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310945298|gb|ADP41592.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 203
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A +L S G + RP + VK + F L+S G ++ R LD Y+G+G++
Sbjct: 3 RIIAGTAGGLRLASVPGENTRPTTDRVKESLFSKLESYG----VVQGARVLDAYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDP 188
G EA+SRG + V FVE P
Sbjct: 59 GCEALSRGAASVEFVEKHP 77
>gi|337269516|ref|YP_004613571.1| methyltransferase [Mesorhizobium opportunistum WSM2075]
gi|336029826|gb|AEH89477.1| methyltransferase [Mesorhizobium opportunistum WSM2075]
Length = 184
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L G L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRSSAIRPTTDRTREAVFNVLAHRFG--EQLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEALSRGASYGVFIE 75
>gi|329961896|ref|ZP_08299909.1| RNA methyltransferase, RsmD family [Bacteroides fluxus YIT 12057]
gi|328531119|gb|EGF57969.1| RNA methyltransferase, RsmD family [Bacteroides fluxus YIT 12057]
Length = 177
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + +R LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHSFKARPTTDFAKENLFNVLSNYMDFEDGVRA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IE +SRGC +V +E D
Sbjct: 58 ISIELVSRGCDQVISIEKD 76
>gi|298480292|ref|ZP_06998490.1| RNA methyltransferase, RsmD family [Bacteroides sp. D22]
gi|298273573|gb|EFI15136.1| RNA methyltransferase, RsmD family [Bacteroides sp. D22]
Length = 177
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGIIA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V +E DP
Sbjct: 58 ISIELVSRGCDHVISIEKDP 77
>gi|418461490|ref|ZP_13032562.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
gi|359738360|gb|EHK87248.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
Length = 181
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 12/107 (11%)
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GG+ R + PKG RP E+V+ A F L++A L R LDLYSG+G++G+E
Sbjct: 6 GGRTLR---VPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGSGALGLE 56
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
A+SRG E FVE D +++L N+ G V + RVE+ +
Sbjct: 57 ALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVV 100
>gi|291459591|ref|ZP_06598981.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 078
str. F0262]
gi|291417869|gb|EFE91588.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 078
str. F0262]
Length = 188
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G ARR L + MD RP + +K F+++Q PG LDL++G+G
Sbjct: 1 MRVIAGSARRMNLRTVDSMDTRPTTDRIKETLFNMIQFDV-------PGTEVLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG F + VS + NL T +D + +
Sbjct: 54 GIGIEALSRGAKRAVFCDNRKEAVS-CIQENLVRTHLMDRAEL 95
>gi|333029827|ref|ZP_08457888.1| Conserved hypothetical protein CHP00095 [Bacteroides coprosuis DSM
18011]
gi|332740424|gb|EGJ70906.1| Conserved hypothetical protein CHP00095 [Bacteroides coprosuis DSM
18011]
Length = 181
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW--LDLYSGT 166
++V+ GK +R+ PK RP + K F++L + G LDL++GT
Sbjct: 1 MRVISGKYKRRMFTVPKTFKARPTTDFAKENLFNVLINN---YIDFEEGNIIALDLFAGT 57
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
GS+ IE +SRGC +V VE D
Sbjct: 58 GSISIELVSRGCEQVVSVEKD 78
>gi|381164814|ref|ZP_09874044.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
gi|379256719|gb|EHY90645.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
Length = 185
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGLAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G++G+EA+SRG E FVE D +++L N+ G V + RVE+ +
Sbjct: 55 GALGLEALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVV 104
>gi|395493344|ref|ZP_10424923.1| methyltransferase [Sphingomonas sp. PAMC 26617]
Length = 178
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGEWRGRPLVAPKGDATRPTADRVREALFSMLSSRLGSFEDLSVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 58 LGLEALSRGAASCIFVEQD 76
>gi|339500050|ref|YP_004698085.1| hypothetical protein Spica_1432 [Spirochaeta caldaria DSM 7334]
gi|338834399|gb|AEJ19577.1| Conserved hypothetical protein CHP00095 [Spirochaeta caldaria DSM
7334]
Length = 177
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 24/127 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ +++ P G+ +RP M+ ++ + F IL G +LD++SG+G
Sbjct: 1 MRITGGQLCGRRVEVPDGV-IRPAMDRMRESVFAILGDLTG-------KSFLDIFSGSGI 52
Query: 169 VGIEAISRGCSEVHFVEMDPW----VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+ +EA SRG + V VEMDP ++ NV I ++ + H + E F++RA++
Sbjct: 53 IALEAASRGANPVDAVEMDPLKRKTLIKNVSISPVKI-------NCHFMSAELFVKRAKK 105
Query: 225 -----FC 226
FC
Sbjct: 106 PFDYIFC 112
>gi|262282766|ref|ZP_06060534.1| RsmD family RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
gi|262262057|gb|EEY80755.1| RsmD family RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
Length = 179
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLDGKKTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IEAISRG E VE D
Sbjct: 55 LAIEAISRGMEEAVLVEKD 73
>gi|404253674|ref|ZP_10957642.1| methyltransferase [Sphingomonas sp. PAMC 26621]
Length = 178
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGEWRGRPLVAPKGDATRPTADRVREALFSMLSSRLGSFEDLSVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 58 LGLEALSRGAASCIFVEQD 76
>gi|375094021|ref|ZP_09740286.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
gi|374654754|gb|EHR49587.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
Length = 186
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+A + L P RP E V+ A F+ L++AG L R LDLY+G+G
Sbjct: 1 MTRIVAGRAGGRALRVPA-HGTRPTSERVREALFNALEAAG----ELDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + FVE D
Sbjct: 56 ALGLEALSRGAATAVFVESD 75
>gi|325915121|ref|ZP_08177447.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
gi|325538643|gb|EGD10313.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
Length = 207
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R KL P +RP + V+ F+ L LR R LDL++G+G+
Sbjct: 16 VRIVGGRWRNTKLAVPDLPGLRPSSDRVRETVFNWLMP------HLRGARVLDLFAGSGA 69
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG + +E DP
Sbjct: 70 LGLEAVSRGAAHATLIERDP 89
>gi|94986727|ref|YP_594660.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|442555552|ref|YP_007365377.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
gi|94730976|emb|CAJ54339.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|441492999|gb|AGC49693.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
Length = 190
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L + +G RP V+ A F +L S G LDL++G+GS
Sbjct: 1 MRIMTGSLRGRILKTIEGDGYRPATGKVREALFSMLTSRG---IVWDQTYILDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G EAISRG +EV F+E +P V L N+E + S+ V FL + F
Sbjct: 58 LGFEAISRGAAEVCFIENNPKAV-QCLYKNIEKLRLFEQVSVVEQDVIQFLNQDSLF 113
>gi|46447493|ref|YP_008858.1| hypothetical protein pc1859 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401134|emb|CAF24583.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 198
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ ++ G R K+L++PK RP ++ A F+I C + +LDL++G+G
Sbjct: 6 FMYIITGLYRHKRLVTPKDDLTRPTASRLREALFNI------CQNFIEEAAFLDLFAGSG 59
Query: 168 SVGIEAISRGCSEVHFVE 185
++G EA+SRG F++
Sbjct: 60 AIGFEALSRGAKSATFID 77
>gi|426402596|ref|YP_007021567.1| hypothetical protein Bdt_0592 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859264|gb|AFY00300.1| hypothetical protein Bdt_0592 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 199
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++ +RP + VK F+ LQ + R +DL+ GTG+
Sbjct: 1 MRIIAGKYRGHQLVAFDADHIRPTTDRVKETLFNKLQF------DIDGARVVDLFCGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+GIEA+SRG FVE +P
Sbjct: 55 LGIEALSRGAEFCTFVEKNP 74
>gi|82703848|ref|YP_413414.1| hypothetical protein Nmul_A2735 [Nitrosospira multiformis ATCC
25196]
gi|82411913|gb|ABB76022.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
25196]
Length = 179
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L P MD+RP + V+ F+ L + R LDL++G+G+
Sbjct: 5 VRIIGGEWRSRILTFPNDMDLRPTPDRVRETVFNWLGQ------DMSHKRCLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVV 191
+G EA SRG +EV VE P V+
Sbjct: 59 MGFEAASRGAAEVVMVESSPAVL 81
>gi|149203462|ref|ZP_01880432.1| hypothetical protein RTM1035_02555 [Roseovarius sp. TM1035]
gi|149143295|gb|EDM31334.1| hypothetical protein RTM1035_02555 [Roseovarius sp. TM1035]
Length = 185
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV----RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++++GG R + L S DV RP + V+ A F++L AGG + R LDL++
Sbjct: 1 MRIIGGAHRGRALASVGKGDVAAHLRPTSDRVREALFNVL--AGGYGDPVTGARVLDLFA 58
Query: 165 GTGSVGIEAISRGCSEVHFVE 185
GTG++G+EA+SRG V F+E
Sbjct: 59 GTGALGLEALSRGAQAVSFIE 79
>gi|257066531|ref|YP_003152787.1| methyltransferase [Anaerococcus prevotii DSM 20548]
gi|256798411|gb|ACV29066.1| methyltransferase [Anaerococcus prevotii DSM 20548]
Length = 187
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SPK RP VK A FD+L ++L DL+SGTG
Sbjct: 1 MRVVAGKYKGFILQSPKSNTSRPTDNKVKEAIFDMLYPFRNNFSAL------DLFSGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIE +SRG EV F E + S +L N+E
Sbjct: 55 MGIEFLSRGAREVTFNERNSSTFS-ILNKNIE 85
>gi|373116165|ref|ZP_09530321.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669629|gb|EHO34728.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 181
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG + FV++ + V+ NL T
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHT 87
>gi|307941690|ref|ZP_07657045.1| RNA methyltransferase, RsmD family [Roseibium sp. TrichSKD4]
gi|307775298|gb|EFO34504.1| RNA methyltransferase, RsmD family [Roseibium sp. TrichSKD4]
Length = 185
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + +++PK RP + ++ F+IL A G L R LDL++G+G+
Sbjct: 1 MRIVAGKFKGAAIVAPKSQSTRPTSDRLRETIFNIL--AHGLDVDLNGSRVLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G EAISRG F+E
Sbjct: 59 LGFEAISRGARHCTFIE 75
>gi|218129216|ref|ZP_03458020.1| hypothetical protein BACEGG_00792 [Bacteroides eggerthii DSM 20697]
gi|317475191|ref|ZP_07934458.1| RsmD family RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
gi|217988594|gb|EEC54914.1| RNA methyltransferase, RsmD family [Bacteroides eggerthii DSM
20697]
gi|316908644|gb|EFV30331.1| RsmD family RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
Length = 181
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + +R LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHSFKARPTTDFAKENLFNVLSNYIDFEEGVRA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IE +SRGC +V +E D
Sbjct: 58 ISIELVSRGCDQVISIEKD 76
>gi|443623861|ref|ZP_21108349.1| putative DNA methylase [Streptomyces viridochromogenes Tue57]
gi|443342642|gb|ELS56796.1| putative DNA methylase [Streptomyces viridochromogenes Tue57]
Length = 195
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG VE D
Sbjct: 59 AVGLEALSRGAGHTLLVEAD 78
>gi|218885279|ref|YP_002434600.1| methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756233|gb|ACL07132.1| methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 190
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L + +G RP M V+ A F +L+S G LR LDL++G+GS
Sbjct: 1 MRIIAGEYGGRVLKTAEGPGYRPAMSRVREALFSMLESRGVVWPGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ EA+SRG +E FVE P
Sbjct: 58 LAFEALSRGAAEAWFVETAP 77
>gi|422846140|ref|ZP_16892823.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK72]
gi|325688191|gb|EGD30210.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK72]
Length = 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 3 FMRVVAGKYGGRPLKTLDGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG E VE D
Sbjct: 57 SLAIEAISRGMEEAVLVERD 76
>gi|294055351|ref|YP_003549009.1| methyltransferase [Coraliomargarita akajimensis DSM 45221]
gi|293614684|gb|ADE54839.1| methyltransferase [Coraliomargarita akajimensis DSM 45221]
Length = 186
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+AR L +PKG RP + ++ + F L SL DL++GTGS
Sbjct: 1 MRITGGRARGIPLKAPKGGTTRPATDRMRESVFSSLGP------SLENCSVADLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
G+EA+SRG S V F E D
Sbjct: 55 YGLEALSRGASSVTFFEND 73
>gi|261367521|ref|ZP_05980404.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
gi|282570303|gb|EFB75838.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
Length = 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
++V+ G AR K L + G DV RP + VK A F +Q L PG R LDL++G+
Sbjct: 1 MRVIAGTARGKNLQALPGEDVTRPTINRVKEAMFSSVQF-------LVPGARVLDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
G +GIEA+SRG FV+ P + ++ N + G S I FL
Sbjct: 54 GQLGIEALSRGAKSCVFVDRSPEAL-GIVTANCKAAGVERQSDIRHGEALAFL 105
>gi|219130778|ref|XP_002185534.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403065|gb|EEC43021.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGT 166
+L++ G A+ ++L SP + +RPMM V+ A + + G PA+ R LD+++G+
Sbjct: 1 MLRIAAGTAKGRRLDSPN-VYLRPMMGKVREAVYSTFTAFGLYDPATTT--RHLDIFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
GSVG+E++SRG + FV++ S V N++W F
Sbjct: 58 GSVGLESLSRGAAHCTFVDLSEDCCSAVE-RNVKWCDF 94
>gi|347730762|ref|ZP_08863873.1| hypothetical protein DA2_0132 [Desulfovibrio sp. A2]
gi|347520474|gb|EGY27608.1| hypothetical protein DA2_0132 [Desulfovibrio sp. A2]
Length = 190
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L + +G RP M V+ A F +L+S G LR LDL++G+GS
Sbjct: 1 MRIIAGEYGGRVLKTAEGPGYRPAMSRVREALFSMLESRGVVWPGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ EA+SRG +E FVE P
Sbjct: 58 LAFEALSRGAAEAWFVETAP 77
>gi|433775885|ref|YP_007306352.1| RNA methyltransferase, RsmD family [Mesorhizobium australicum
WSM2073]
gi|433667900|gb|AGB46976.1| RNA methyltransferase, RsmD family [Mesorhizobium australicum
WSM2073]
Length = 184
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRSSAIRPTTDRTREAVFNVLAHR--FAGQLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEALSRGASYGVFIE 75
>gi|54295513|ref|YP_127928.1| hypothetical protein lpl2600 [Legionella pneumophila str. Lens]
gi|53755345|emb|CAH16841.1| hypothetical protein lpl2600 [Legionella pneumophila str. Lens]
Length = 181
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++++GG R KK+ P +RP + V+ F+ L + +R R LD ++G+
Sbjct: 3 QIIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMN------DIRNARCLDAFAGS 56
Query: 167 GSVGIEAISRGCSEVHFVEMDP 188
G++G EA SRG S V F+E P
Sbjct: 57 GALGFEAYSRGASHVVFIEQSP 78
>gi|404474700|ref|YP_006706131.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli B2904]
gi|404436189|gb|AFR69383.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli B2904]
Length = 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL 195
VG EA+S+G F+E+D V +
Sbjct: 52 VGFEALSKGAKFAAFIEIDREAVKTIF 78
>gi|395225961|ref|ZP_10404467.1| RNA methyltransferase, RsmD family [Thiovulum sp. ES]
gi|394445852|gb|EJF06720.1| RNA methyltransferase, RsmD family [Thiovulum sp. ES]
Length = 185
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
+++ GGK + +K+ P RP +V+ + FD LQ+ GR +++L++G+G
Sbjct: 5 IKIDGGKYKGQKIELPNIETTRPSKSIVRNSIFDTLQTEIA-------GRDFVELFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
SVG EA+SRG + V F E +
Sbjct: 58 SVGFEALSRGANRVFFFEQN 77
>gi|291437034|ref|ZP_06576424.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
gi|291339929|gb|EFE66885.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
Length = 195
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWQALLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG VE D V V
Sbjct: 59 AVGLEALSRGAGHALLVEADARAVRTV 85
>gi|228472380|ref|ZP_04057145.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276248|gb|EEK14983.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 179
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R K+L++PK + VRP + K + F+IL + L + LDL++GTG+
Sbjct: 1 MRIISGSHRGKQLIAPKNLPVRPTTDFAKESLFNILNNY----FYLDSIKVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVE 185
+ E SRGC ++ V+
Sbjct: 57 ISYEFGSRGCPDITAVD 73
>gi|312873984|ref|ZP_07734020.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2052A-d]
gi|325911478|ref|ZP_08173889.1| RNA methyltransferase, RsmD family [Lactobacillus iners UPII 143-D]
gi|311090533|gb|EFQ48941.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2052A-d]
gi|325476678|gb|EGC79833.1| RNA methyltransferase, RsmD family [Lactobacillus iners UPII 143-D]
Length = 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK R+ L + K RP + VK + F+ + Q G GR LDLY+G+G
Sbjct: 1 MRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++G+EA+SRG FV+++ + ++ N+ T
Sbjct: 54 ALGLEAVSRGYDSAVFVDIN-YAACEIIKKNILLT 87
>gi|345513421|ref|ZP_08792942.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
gi|229437428|gb|EEO47505.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
Length = 186
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|403510490|ref|YP_006642128.1| RNA methyltransferase, RsmD family [Nocardiopsis alba ATCC
BAA-2165]
gi|402798475|gb|AFR05885.1| RNA methyltransferase, RsmD family [Nocardiopsis alba ATCC
BAA-2165]
Length = 188
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +++ +P G RP + + A F +QS G SL R +DLY+G+G
Sbjct: 1 MTRIIAGAAGGRRITAPDGRTTRPTSDRAREALFSSVQSDLG---SLEGVRVMDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMD 187
++G+EA+SRG + VE D
Sbjct: 58 AIGLEALSRGAAHALLVEAD 77
>gi|398829664|ref|ZP_10587861.1| RNA methyltransferase, RsmD family [Phyllobacterium sp. YR531]
gi|398216591|gb|EJN03137.1| RNA methyltransferase, RsmD family [Phyllobacterium sp. YR531]
Length = 185
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +P+ +RP + + + F+IL P R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRSLATPETNAIRPTTDRTRESLFNILVH--NYPEKFESTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG F+E
Sbjct: 59 LGLEAMSRGARYGIFIE 75
>gi|335047433|ref|ZP_08540454.1| hypothetical protein HMPREF9126_0351 [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761241|gb|EGL38796.1| hypothetical protein HMPREF9126_0351 [Parvimonas sp. oral taxon 110
str. F0139]
Length = 83
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R KLLSP VRP + +K + F+IL LDL+ G+G+
Sbjct: 1 MRIISGEKRGLKLLSPIDYRVRPTTDKIKESIFNILSEID------ENSIVLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+GIE ISRG +V+F +
Sbjct: 55 IGIEFISRGAKKVYFCDF 72
>gi|429197306|ref|ZP_19189208.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
gi|428666974|gb|EKX66095.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
Length = 195
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG VE D
Sbjct: 59 AVGLEALSRGAGHALLVEAD 78
>gi|365845621|ref|ZP_09386382.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
gi|364559688|gb|EHM37657.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
Length = 181
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG + FV++ + V+ NL T
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHT 87
>gi|302191386|ref|ZP_07267640.1| hypothetical protein LineA_05182 [Lactobacillus iners AB-1]
gi|309803952|ref|ZP_07698035.1| RNA methyltransferase, RsmD family [Lactobacillus iners LactinV
11V1-d]
gi|309809287|ref|ZP_07703156.1| RNA methyltransferase, RsmD family [Lactobacillus iners SPIN
2503V10-D]
gi|312871393|ref|ZP_07731488.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
3008A-a]
gi|312872331|ref|ZP_07732401.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2062A-h1]
gi|312875499|ref|ZP_07735502.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2053A-b]
gi|315653469|ref|ZP_07906390.1| methyltransferase [Lactobacillus iners ATCC 55195]
gi|308163954|gb|EFO66218.1| RNA methyltransferase, RsmD family [Lactobacillus iners LactinV
11V1-d]
gi|308170400|gb|EFO72424.1| RNA methyltransferase, RsmD family [Lactobacillus iners SPIN
2503V10-D]
gi|311089010|gb|EFQ47451.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2053A-b]
gi|311092154|gb|EFQ50528.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2062A-h1]
gi|311093046|gb|EFQ51395.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
3008A-a]
gi|315489160|gb|EFU78801.1| methyltransferase [Lactobacillus iners ATCC 55195]
Length = 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK R+ L + K RP + VK + F+ + Q G GR LDLY+G+G
Sbjct: 1 MRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++G+EA+SRG FV+++ + ++ N+ T
Sbjct: 54 ALGLEAVSRGYDSAVFVDIN-YAACEIIKKNILLT 87
>gi|399546705|ref|YP_006560013.1| ribosomal RNA small subunit methyltransferase D [Marinobacter sp.
BSs20148]
gi|399162037|gb|AFP32600.1| Ribosomal RNA small subunit methyltransferase D [Marinobacter sp.
BSs20148]
Length = 217
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
KS R T L+++GG R +KL P VRP + F+ L+ L
Sbjct: 23 KSASGRGTLGELRIIGGDWRSRKLTFPDSGGVRPTPARTRETLFNWLRF------HLAGA 76
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
R LDL++G+G++G+EA+SRG + FV+ P +V L NL L + VR +T
Sbjct: 77 RCLDLFAGSGALGLEALSRGAAHSVFVDHTPELV-KALNSNL---ALLQADNARVVRQDT 132
>gi|422852162|ref|ZP_16898832.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK150]
gi|325694149|gb|EGD36067.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK150]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 3 FMRVVAGKYGGRPLKTLDGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG E VE D
Sbjct: 57 SLAIEAISRGMEEAVLVERD 76
>gi|240140667|ref|YP_002965147.1| methyltransferase with SAM-dependent methyltransferase domain
[Methylobacterium extorquens AM1]
gi|240010644|gb|ACS41870.1| putative methyltransferase with SAM-dependent methyltransferase
domain [Methylobacterium extorquens AM1]
Length = 184
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R ++L+ PK +RP + ++ A F++L A ++ LDL++GTG+
Sbjct: 1 MRIVGGEWRGRRLVGPKAEGIRPTSDRLREALFNVLAHA--YDDAVEDAVVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG + FV+
Sbjct: 59 LGFEALSRGAARALFVD 75
>gi|393721602|ref|ZP_10341529.1| methyltransferase [Sphingomonas echinoides ATCC 14820]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + +++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGKWRGRPIVAPKGDATRPTADRVREALFSMLASRLGSFEDLAVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 58 LGLEALSRGAASCIFVEQD 76
>gi|357975348|ref|ZP_09139319.1| methyltransferase [Sphingomonas sp. KC8]
Length = 186
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + + +P G RP + + A F +L S G LR +DL++G+G+
Sbjct: 1 MRIIAGKWRGRTIAAPAGDATRPTSDRTREALFSMLASRLGSFEDLRV---VDLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
+G EA+SRG + FVE D +++L N
Sbjct: 58 LGFEALSRGAAHAIFVEQDR-AAADILRAN 86
>gi|359401236|ref|ZP_09194206.1| N6-adenine-specific methylase [Novosphingobium pentaromativorans
US6-1]
gi|357597307|gb|EHJ59055.1| N6-adenine-specific methylase [Novosphingobium pentaromativorans
US6-1]
Length = 189
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G R +KL +P+G RP + + F +L S G L+ DL++G+G+
Sbjct: 8 LRIVAGAWRGRKLAAPEGDTTRPTADRTRETLFSMLTSRLGTFEGLKVA---DLFAGSGA 64
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSS 209
+G+EA+SRG + FV+ D + + I NL+ DV +
Sbjct: 65 LGLEALSRGAAHCLFVDQDAAAIRAIRRNIANLQAQSQCDVRA 107
>gi|357383541|ref|YP_004898265.1| ribosomal RNA small subunit methyltransferase D [Pelagibacterium
halotolerans B2]
gi|351592178|gb|AEQ50515.1| ribosomal RNA small subunit methyltransferase D [Pelagibacterium
halotolerans B2]
Length = 184
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R K+L +PK ++RP + V+ A F I+ S G L LDL++GTG+
Sbjct: 1 MRIVAGKFRGKQLEAPKSDEIRPTSDRVREAVFSIIGSRIG--PHLEGLHVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG + F++
Sbjct: 59 LGLEALSRGAAHCVFID 75
>gi|295086587|emb|CBK68110.1| N6-adenine-specific methylase [Bacteroides xylanisolvens XB1A]
Length = 177
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGIIA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V +E DP
Sbjct: 58 ISIELVSRGCDRVISIEKDP 77
>gi|154247022|ref|YP_001417980.1| putative methyltransferase [Xanthobacter autotrophicus Py2]
gi|154161107|gb|ABS68323.1| putative methyltransferase [Xanthobacter autotrophicus Py2]
Length = 183
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ + + L P RP + ++ + F++L A G P R LDL++GTG+
Sbjct: 1 MRIVGGRLKGRALKGPSSSATRPTSDRLRESLFNMLAHAYGDPCD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+GIEA+SRG FVE + ++ N+E G V+ +
Sbjct: 59 LGIEALSRGARFTLFVE-EAAEARGLIRDNVEALGLTGVTKV 99
>gi|58337142|ref|YP_193727.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227903718|ref|ZP_04021523.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
gi|58254459|gb|AAV42696.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227868605|gb|EEJ76026.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
Length = 183
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFDG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAE 223
++GIEA+SRG V+++ S ++ N+ T S++ +R ++TF E E
Sbjct: 54 ALGIEAVSRGYDRASLVDINRAACS-IIKKNVALTKEEAKFSVYNMRSNVALKTFAENGE 112
Query: 224 QF 225
+F
Sbjct: 113 KF 114
>gi|422879401|ref|ZP_16925867.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK1059]
gi|422929247|ref|ZP_16962189.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis ATCC 29667]
gi|422932218|ref|ZP_16965149.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK340]
gi|332366113|gb|EGJ43869.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK1059]
gi|339615063|gb|EGQ19746.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis ATCC 29667]
gi|339619002|gb|EGQ23592.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK340]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 3 FMRVVAGKYGGRLLKTLDGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG E VE D
Sbjct: 57 SLAIEAISRGMEEAVLVERD 76
>gi|422860671|ref|ZP_16907315.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK330]
gi|327469054|gb|EGF14526.1| ribosomal RNA small subunit methyltransferase D [Streptococcus
sanguinis SK330]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 3 FMRVVAGKYGGRPLKTLDGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG E VE D
Sbjct: 57 SLAIEAISRGMEEAVLVERD 76
>gi|149181729|ref|ZP_01860221.1| hypothetical protein BSG1_18240 [Bacillus sp. SG-1]
gi|148850577|gb|EDL64735.1| hypothetical protein BSG1_18240 [Bacillus sp. SG-1]
Length = 189
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + + L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 5 MRVISGECKGRPLKAVPGSGTRPTTDKVKEAIFNIIG------PYFESGTGLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG +V FV+ D + V NL+ G+ + S ++
Sbjct: 59 LGIEALSRGLEKVIFVDKDFKAMQTVK-SNLDSCGYNEKSEVY 100
>gi|375008061|ref|YP_004981694.1| methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286910|gb|AEV18594.1| Methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 201
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 2 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G +GIEA+SRG V FV+ D V V
Sbjct: 56 GGLGIEALSRGIERVIFVDQDRKAVQTV 83
>gi|385826087|ref|YP_005862429.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|417837761|ref|ZP_12483999.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
gi|329667531|gb|AEB93479.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|338761304|gb|EGP12573.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLYTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++GIEA+SRG E V++ V+ N+E T
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELT 87
>gi|223992627|ref|XP_002285997.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977312|gb|EED95638.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 240
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---------GCPASLRPGRW 159
L++LGG R +KL SP + +RPMM VK A + S G G R
Sbjct: 16 LRILGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGLYENNQNIGGGGTGTCSTRH 74
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEM 186
LD++SG+GSVG+E++SRG FV+M
Sbjct: 75 LDIFSGSGSVGLESLSRGARHCTFVDM 101
>gi|33240591|ref|NP_875533.1| N-6 adenine-specific DNA methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238119|gb|AAQ00186.1| N6-adenine-specific methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 200
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ KL SP G VRP V+ A +IL+ + WLDLYSG+G+
Sbjct: 5 LRLIGGR----KLKSPIGDLVRPTTARVREALMNILKE------DIENSNWLDLYSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G EAI RG + V +E +
Sbjct: 55 IGCEAIQRGANTVVAIEQN 73
>gi|326790887|ref|YP_004308708.1| methyltransferase [Clostridium lentocellum DSM 5427]
gi|326541651|gb|ADZ83510.1| methyltransferase [Clostridium lentocellum DSM 5427]
Length = 184
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L +P+GM+ RP + +K F+++ A P +LDL+SG+G+
Sbjct: 1 MRVISGRCRGTHLEAPEGMNTRPTTDRIKETLFNMI--AFDIPEC----EFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+ IEA+SRG VE D ++ + NLE T
Sbjct: 55 MAIEALSRGGKRAVLVEKDTKALA-CIEQNLEKT 87
>gi|319408054|emb|CBI81708.1| putative enzyme [Bartonella schoenbuchensis R1]
Length = 185
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SP G +RP + ++ + F+IL S + R R LDL++GTG+
Sbjct: 1 MRIIGGKFAGRILSSPLGQSIRPTSDRIRESLFNILVSREEQFWANR--RVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|358446741|ref|ZP_09157283.1| putative site-specific DNA-methyltransferase (adenine specific)
[Corynebacterium casei UCMA 3821]
gi|356607324|emb|CCE55628.1| putative site-specific DNA-methyltransferase (adenine specific)
[Corynebacterium casei UCMA 3821]
Length = 190
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR + ++ P RP + + F L G S R LD+++G+G
Sbjct: 1 MTRIIAGQARGRTIIVPT-EGTRPTSDRAREGLFSSLAVRWGFEQS----RVLDIFAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
++G+EA SRG EVH V+ V N+ N + G V +IH ++ T+L+R
Sbjct: 56 ALGLEAASRGAEEVHLVDASAEAVKNIK-HNAQVVGHPKV-TIHEMKAGTYLDR 107
>gi|373957836|ref|ZP_09617796.1| methyltransferase [Mucilaginibacter paludis DSM 18603]
gi|373894436|gb|EHQ30333.1| methyltransferase [Mucilaginibacter paludis DSM 18603]
Length = 180
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +L +PK + VRP ++ K A F+IL + LDL+SGTG+
Sbjct: 1 MRIIGGKLRGLRLNTPKNLPVRPTTDLAKEALFNILNNQ----IEFEGLNVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEV 181
+ +E SRG +V
Sbjct: 57 ISLEFASRGARQV 69
>gi|113952730|ref|YP_730181.1| methyltransferase [Synechococcus sp. CC9311]
gi|113880081|gb|ABI45039.1| putative methyltransferase [Synechococcus sp. CC9311]
Length = 205
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
LL++ GG+ +L SP G RP V+ A ++L S L+ WLDL SG+G
Sbjct: 4 LLRLSGGR----RLRSPVGTSTRPTAARVREAVMNMLAS------ELQGASWLDLCSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+G EAI RG S V VE DP
Sbjct: 54 VMGCEAIERGVSRVWAVEKDP 74
>gi|300741701|ref|ZP_07071722.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
gi|300380886|gb|EFJ77448.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
Length = 203
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A +L S G + RP + VK + F L+S G ++ R LD Y+G+G++
Sbjct: 3 RIIAGTAGGLRLASVPGENTRPTTDRVKESLFSKLESYG----VVQGARVLDAYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDP 188
G EA+SRG + V FVE P
Sbjct: 59 GCEALSRGAASVEFVEKYP 77
>gi|265755931|ref|ZP_06090398.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263234009|gb|EEZ19610.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 186
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|261416930|ref|YP_003250613.1| methyltransferase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791743|ref|YP_005822866.1| putative methyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373386|gb|ACX76131.1| methyltransferase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302327156|gb|ADL26357.1| putative methyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 180
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R + + SP M RP + A F+ILQ G R LDL++G+G
Sbjct: 3 IRITGGLLRGRNIESPDTMKTRPTASRTREALFNILQGVDGF-------RVLDLFAGSGI 55
Query: 169 VGIEAISRGCSEVHFVEM 186
+G+EA+SRG + V VE+
Sbjct: 56 MGLEALSRGAASVTAVEL 73
>gi|415886451|ref|ZP_11548231.1| methyltransferase [Bacillus methanolicus MGA3]
gi|387587138|gb|EIJ79461.1| methyltransferase [Bacillus methanolicus MGA3]
Length = 135
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGACKGRILKAVPGSSTRPTTDKVKEAIFNMIGP------YFDGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
+GIEA+SRG S+V FV+ D + ++ N++ G ++ S ++ E L+
Sbjct: 55 LGIEALSRGLSKVIFVDKDKKAI-QIIHENIKTCGLMEQSEVYLNSAERALK 105
>gi|212693643|ref|ZP_03301771.1| hypothetical protein BACDOR_03162 [Bacteroides dorei DSM 17855]
gi|423228889|ref|ZP_17215295.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T00C15]
gi|423247701|ref|ZP_17228749.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T12C06]
gi|212663896|gb|EEB24470.1| putative RNA methyltransferase, RsmD family [Bacteroides dorei DSM
17855]
gi|392631594|gb|EIY25565.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T12C06]
gi|392635628|gb|EIY29527.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T00C15]
Length = 186
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|218532075|ref|YP_002422891.1| methyltransferase [Methylobacterium extorquens CM4]
gi|218524378|gb|ACK84963.1| methyltransferase [Methylobacterium extorquens CM4]
Length = 184
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R ++L+ PK +RP + ++ A F++L A ++ LDL++GTG+
Sbjct: 1 MRIVGGEWRGRRLVGPKAEGIRPTSDRLREALFNVLAHA--YDDAVEDAVVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG + FV+
Sbjct: 59 LGFEALSRGAARALFVD 75
>gi|455651576|gb|EMF30302.1| DNA methylase [Streptomyces gancidicus BKS 13-15]
Length = 195
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLLSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+VG+EA+SRG V VE D V V
Sbjct: 59 AVGLEALSRGAGHVLLVESDARAVRTV 85
>gi|237708803|ref|ZP_04539284.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229457229|gb|EEO62950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 186
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|239906807|ref|YP_002953548.1| hypothetical protein DMR_21710 [Desulfovibrio magneticus RS-1]
gi|239796673|dbj|BAH75662.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 200
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLER 221
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAVFIERSP-AVAKVLKENLRGLGLGPDVAQVVEADVVKALGR 110
>gi|365840250|ref|ZP_09381450.1| RNA methyltransferase, RsmD family [Anaeroglobus geminatus F0357]
gi|364562040|gb|EHM39911.1| RNA methyltransferase, RsmD family [Anaeroglobus geminatus F0357]
Length = 196
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 11/81 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP---GRWLDLYSG 165
++++ G+AR + L SP+G RP + + + F+IL + RP R LD+++G
Sbjct: 13 VRIISGRARGRILKSPRGTATRPTSDRTRESLFNILAA--------RPFGQARILDIFAG 64
Query: 166 TGSVGIEAISRGCSEVHFVEM 186
TG++G+EA+SRG E F+++
Sbjct: 65 TGALGLEAMSRGAVEGVFIDI 85
>gi|315221974|ref|ZP_07863885.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
gi|315188940|gb|EFU22644.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
Length = 214
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 35 FMRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 88
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG + VE D
Sbjct: 89 SLAIEAISRGMASAVLVEKD 108
>gi|114705780|ref|ZP_01438683.1| hypothetical protein FP2506_14979 [Fulvimarina pelagi HTCC2506]
gi|114538626|gb|EAU41747.1| hypothetical protein FP2506_14979 [Fulvimarina pelagi HTCC2506]
Length = 185
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P D+RP + + F+IL G L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRKLSVPATQDIRPTTDRSRETLFNILSHHPGI--KLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG F+E
Sbjct: 59 LGCEALSRGARFCVFIE 75
>gi|225874462|ref|YP_002755921.1| methyltransferase [Acidobacterium capsulatum ATCC 51196]
gi|225792429|gb|ACO32519.1| putative methyltransferase [Acidobacterium capsulatum ATCC 51196]
Length = 186
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L +P G RP + ++ F++L + +LDLY+G+G+
Sbjct: 1 MRVIAGQYRSRPLTAPPGQGTRPTSDRLRETLFNVLAP------RIEGAIFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
VGIEA+SRG E FV+
Sbjct: 55 VGIEALSRGAREAIFVD 71
>gi|334142400|ref|YP_004535608.1| N6-adenine-specific methylase [Novosphingobium sp. PP1Y]
gi|333940432|emb|CCA93790.1| N6-adenine-specific methylase [Novosphingobium sp. PP1Y]
Length = 189
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G R +KL +P+G RP + + F +L S G L+ DL++G+G+
Sbjct: 8 LRIVAGAWRGRKLATPEGDATRPTADRTRETLFSMLTSRLGTFEGLKVA---DLFAGSGA 64
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTV 213
+G+EA+SRG + FV+ D + + I NL+ DV + +
Sbjct: 65 LGLEALSRGAAHCLFVDQDAAAIRAIRRNIANLQAQSQCDVRACSAL 111
>gi|456388607|gb|EMF54047.1| hypothetical protein SBD_3715 [Streptomyces bottropensis ATCC
25435]
Length = 195
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWESLLGGP--LHGARVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG VE D
Sbjct: 59 AVGLEALSRGAGHTLLVEAD 78
>gi|73662973|ref|YP_301754.1| N6-adenine-specific methylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495488|dbj|BAE18809.1| putative N6-adenine-specific methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 180
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVISGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+GIEA+SRG ++ FV+ + V V+ NL+
Sbjct: 53 LGIEALSRGIDQMIFVDQNFKAVK-VIKANLK 83
>gi|410462786|ref|ZP_11316342.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409984050|gb|EKO40383.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 200
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLER 221
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAIFIERSP-AVAKVLRDNLRGLGLGPDVAQVVEADVVKALGR 110
>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 198
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG V FV+ D V V
Sbjct: 55 LGIEALSRGIERVIFVDQDRKAVQTV 80
>gi|365132904|ref|ZP_09342465.1| RsmD family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363616224|gb|EHL67673.1| RsmD family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G AR +L + G ++ RP ++ VK F +Q L R LDL++G+G
Sbjct: 1 MRVISGTARGTRLAALPGEEITRPTVDRVKEGMFSAVQFL------LAGARVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GIEA+SRG + F++ + V+ NL+ G + +S+ E +L
Sbjct: 55 QLGIEALSRGAARCVFIDSSREACA-VVRQNLKAAGLFEKASVAETAAEMYL 105
>gi|90023238|ref|YP_529065.1| methyl-accepting chemotaxis sensory transducer [Saccharophagus
degradans 2-40]
gi|89952838|gb|ABD82853.1| methyl-accepting chemotaxis sensory transducer [Saccharophagus
degradans 2-40]
Length = 202
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL + +RP + V+ F+ LQ + R LDL++GTG+
Sbjct: 21 IRIIAGDWRGRKLPVAEVDGLRPTGDRVRETLFNWLQ------LDISDARCLDLFAGTGA 74
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG SEV F E+D
Sbjct: 75 LGLEALSRGASEVVFTELD 93
>gi|339445279|ref|YP_004711283.1| hypothetical protein EGYY_17460 [Eggerthella sp. YY7918]
gi|338905031|dbj|BAK44882.1| hypothetical protein EGYY_17460 [Eggerthella sp. YY7918]
Length = 201
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L +PKG RP + V+ + ++ SA G LD ++G+G+
Sbjct: 1 MRIIAGEFRGRTLKAPKGEGTRPTTDRVRESLMSVIASARG---GFDDAVVLDAFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S VHF E
Sbjct: 58 LGLEALSRGASCVHFYE 74
>gi|315651228|ref|ZP_07904258.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486524|gb|EFU76876.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEK 106
>gi|54298663|ref|YP_125032.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
gi|397665264|ref|YP_006506802.1| putative methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|53752448|emb|CAH13880.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
gi|395128675|emb|CCD06893.1| putative methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 181
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++++GG R KK+ P +RP + V+ F+ L + +R R LD ++G+
Sbjct: 3 QVIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMN------DIRNARCLDAFAGS 56
Query: 167 GSVGIEAISRGCSEVHFVEMDP 188
G++G EA SRG S V F+E P
Sbjct: 57 GALGFEAYSRGASHVVFIEQSP 78
>gi|163853260|ref|YP_001641303.1| methyltransferase [Methylobacterium extorquens PA1]
gi|163664865|gb|ABY32232.1| methyltransferase [Methylobacterium extorquens PA1]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R ++L+ PK +RP + ++ A F++L A ++ LDL++GTG+
Sbjct: 1 MRIVGGEWRGRRLVGPKAEGIRPTSDRLREALFNVLAHA--YDDAVEDAVVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G EA+SRG + FV+
Sbjct: 59 LGFEALSRGAARALFVD 75
>gi|443289357|ref|ZP_21028451.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
gi|385887510|emb|CCH16525.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
Length = 187
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F +++ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVEA----EVDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
+VG+EA+SRG V VE DP
Sbjct: 57 AVGLEALSRGARHVLLVESDP 77
>gi|319784271|ref|YP_004143747.1| methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170159|gb|ADV13697.1| methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRSSAIRPTTDRTREAVFNVLAHR--FAEQLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEALSRGASYGVFIE 75
>gi|389806166|ref|ZP_10203306.1| RsmD family RNA methyltransferase [Rhodanobacter thiooxydans LCS2]
gi|388446165|gb|EIM02211.1| RsmD family RNA methyltransferase [Rhodanobacter thiooxydans LCS2]
Length = 193
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R +L P+ +RP E V+ F+ L G R LDL +GTG+
Sbjct: 12 IRIIGGSLRNSRLEVPELPGLRPTPERVRETLFNWLAPVLGG------ARCLDLCAGTGA 65
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEA+SRG + V FVE D
Sbjct: 66 LGIEALSRGAASVQFVERD 84
>gi|83591992|ref|YP_425744.1| hypothetical protein Rru_A0653 [Rhodospirillum rubrum ATCC 11170]
gi|386348688|ref|YP_006046936.1| hypothetical protein F11_03345 [Rhodospirillum rubrum F11]
gi|83574906|gb|ABC21457.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
gi|346717124|gb|AEO47139.1| hypothetical protein F11_03345 [Rhodospirillum rubrum F11]
Length = 192
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 25/123 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL----QSAGGCPASLRPGRWLDLYS 164
++++GG+ + K L +P G VRP + + A F++L Q G SL LD ++
Sbjct: 1 MRIVGGRLKGKVLTAPVGPAVRPTGDRTREALFNVLVHRFQGRDGF--SLEGAIVLDAFA 58
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GTG++G+EA+SRG + V F+E P +S+ +R RAE
Sbjct: 59 GTGALGLEALSRGAARVAFLEQAP-------------------ASLALIRANIAACRAEA 99
Query: 225 FCR 227
C+
Sbjct: 100 VCK 102
>gi|440696021|ref|ZP_20878524.1| RNA methyltransferase, RsmD family [Streptomyces turgidiscabies
Car8]
gi|440281779|gb|ELP69324.1| RNA methyltransferase, RsmD family [Streptomyces turgidiscabies
Car8]
Length = 194
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMD 187
+VG+EA+SRG VE D
Sbjct: 59 AVGLEALSRGAGHTLLVEAD 78
>gi|49473910|ref|YP_031952.1| hypothetical protein BQ02480 [Bartonella quintana str. Toulouse]
gi|49239413|emb|CAF25751.1| hypothetical protein BQ02480 [Bartonella quintana str. Toulouse]
Length = 185
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGKFAGRVLFTPVGQSIRPTSDRTRESLFNILASRE--EKFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|296108319|ref|YP_003620020.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
gi|295650221|gb|ADG26068.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
Length = 181
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++++GG R KK+ P +RP + V+ F+ L + +R R LD ++G+
Sbjct: 3 QVIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMN------DIRNARCLDAFAGS 56
Query: 167 GSVGIEAISRGCSEVHFVEMDP 188
G++G EA SRG S V F+E P
Sbjct: 57 GALGFEAYSRGASHVVFIEQSP 78
>gi|224025726|ref|ZP_03644092.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
18228]
gi|224018962|gb|EEF76960.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
18228]
Length = 188
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNYIDFEDGVTA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V VE DP
Sbjct: 58 ISIELVSRGCDRVISVEKDP 77
>gi|354594977|ref|ZP_09013014.1| N6-adenine-specific methylase [Commensalibacter intestini A911]
gi|353671816|gb|EHD13518.1| N6-adenine-specific methylase [Commensalibacter intestini A911]
Length = 188
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
++++ G + L +P G + RP ++ + FDIL A A + LD ++GTG
Sbjct: 1 MRIIAGNYKGTTLYAPMGKETRPTLDRARQTLFDILLHAPWAGKAFIESAIVLDAFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVE 185
++G+EA+SRG + +F E
Sbjct: 61 ALGLEALSRGAQKAYFFE 78
>gi|329957541|ref|ZP_08298016.1| RNA methyltransferase, RsmD family [Bacteroides clarus YIT 12056]
gi|328522418|gb|EGF49527.1| RNA methyltransferase, RsmD family [Bacteroides clarus YIT 12056]
Length = 182
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P RP + K F++L + +R LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNYLDFEEGVRA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IE +SRGC +V +E D
Sbjct: 58 ISIELVSRGCDQVISIERD 76
>gi|304321113|ref|YP_003854756.1| hypothetical protein PB2503_07794 [Parvularcula bermudensis
HTCC2503]
gi|303300015|gb|ADM09614.1| hypothetical protein PB2503_07794 [Parvularcula bermudensis
HTCC2503]
Length = 189
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG + L++PKG + RP + + + F+IL SL R LDL++G+G+
Sbjct: 1 MRIVGGALGGRPLVAPKGRETRPTTDRTRESLFNILTHR--ADLSLEGARILDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEM 186
+G EAISRG + FV++
Sbjct: 59 LGFEAISRGGAFCLFVDI 76
>gi|359785875|ref|ZP_09289021.1| methyltransferase [Halomonas sp. GFAJ-1]
gi|359296825|gb|EHK61067.1| methyltransferase [Halomonas sp. GFAJ-1]
Length = 183
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 4 LRIIGGDFRRRQLPVLDHPGLRPTPDRVRETLFNWLGQ------QLYGTQVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG S+V FVE D V + +
Sbjct: 58 LGIEALSRGASQVIFVERDAQVATLI 83
>gi|448237266|ref|YP_007401324.1| rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445206108|gb|AGE21573.1| rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 204
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G +GIEA+SRG V FV+ D V V
Sbjct: 59 GGLGIEALSRGIERVIFVDQDRKAVQTV 86
>gi|419719315|ref|ZP_14246600.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
gi|383304509|gb|EIC95909.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYNATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEK 106
>gi|108804210|ref|YP_644147.1| hypothetical protein Rxyl_1372 [Rubrobacter xylanophilus DSM 9941]
gi|108765453|gb|ABG04335.1| conserved hypothetical protein 95 [Rubrobacter xylanophilus DSM
9941]
Length = 177
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G+AR +L +P VRP + V+ + F+ L G LDLY+GTG++G
Sbjct: 1 MISGEARGVRL-APVPPGVRPTSDRVRESLFNALGQ------FFEGGEVLDLYAGTGALG 53
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
IEA+SRGC FVE P + + NL TG
Sbjct: 54 IEALSRGCDRAVFVEKSPRAAAAIR-ENLRRTGL 86
>gi|452991983|emb|CCQ96599.1| putative ribosomal RNA small subunit methyltransferase D
[Clostridium ultunense Esp]
Length = 186
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V+ GK + +KL + G RP + VK A F+++ GG LDL++GT
Sbjct: 1 MRVISGKWKGRKLFAVPGRTTRPTADKVKEALFNMIGPYFTGGIG--------LDLFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
G +GIEA+SRG F++ D V + NL+ G D + ++
Sbjct: 53 GGLGIEALSRGFDRFIFIDRDIRAVETIR-ANLKQVGGWDEAEVY 96
>gi|383753446|ref|YP_005432349.1| putative methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365498|dbj|BAL82326.1| putative methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 194
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGT 166
++++ G AR +L +PKG +V RP + VK + F+IL PGR LD+++GT
Sbjct: 1 MRIITGSARGCRLKAPKGAEVTRPTADRVKESLFNIL-------GDFVPGRKVLDIFAGT 53
Query: 167 GSVGIEAISRGCSEVHFVE 185
G++G+EA+SRG FV+
Sbjct: 54 GNLGLEALSRGAQSAVFVD 72
>gi|150004456|ref|YP_001299200.1| methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|149932880|gb|ABR39578.1| putative methyltransferase [Bacteroides vulgatus ATCC 8482]
Length = 186
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFEDGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|121999086|ref|YP_001003873.1| putative methyltransferase [Halorhodospira halophila SL1]
gi|121590491|gb|ABM63071.1| 16S rRNA m(2)G-966 methyltransferase [Halorhodospira halophila SL1]
Length = 196
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
L+++ G+ R ++L P + VRP + V+ F+ L A + PG R LDL++GTG
Sbjct: 9 LRIIAGQWRGRRLPIPAEIGVRPTGDRVRETLFNWL-------APMLPGARCLDLFAGTG 61
Query: 168 SVGIEAISRGCSEVHFVE 185
++G+EA+SRG +EV VE
Sbjct: 62 ALGLEALSRGAAEVVLVE 79
>gi|146296796|ref|YP_001180567.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410372|gb|ABP67376.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F++L P D ++GTG+
Sbjct: 1 MRVISGQNKGRRLKSANIQGLRPTSDRVKEALFNMLS-----PFLNEEVVVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
VGIE +SRG EV FVE D V +V+ NL+ G + + + V FL
Sbjct: 56 VGIEFLSRGVKEVVFVEKDERCV-HVIKENLKDLGLSERAKVFKTDVLRFL 105
>gi|336451851|ref|ZP_08622285.1| RNA methyltransferase, RsmD family [Idiomarina sp. A28L]
gi|336281184|gb|EGN74467.1| RNA methyltransferase, RsmD family [Idiomarina sp. A28L]
Length = 200
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL +RP + VK F+ LQ + R LD ++G+GS
Sbjct: 19 IRIIGGQWRGRKLAVLDLEGLRPTTDRVKETLFNWLQ------FEMPNARVLDAFAGSGS 72
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG +EV FVE P
Sbjct: 73 LGLEALSRGAAEVVFVEKSP 92
>gi|319406591|emb|CBI80233.1| putative enzyme [Bartonella sp. 1-1C]
Length = 185
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L P G+ +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRVIGGKFSGRILAKPLGLSIRPTTDRTRESLFNILTSRE--ENFWVNKRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|451337391|ref|ZP_21907936.1| Ribosomal RNA small subunit methyltransferase D [Amycolatopsis
azurea DSM 43854]
gi|449419986|gb|EMD25497.1| Ribosomal RNA small subunit methyltransferase D [Amycolatopsis
azurea DSM 43854]
Length = 184
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L+ AG L+ + LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELQGSQVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG S FVE D
Sbjct: 55 GALGLEALSRGASGALFVESD 75
>gi|339009327|ref|ZP_08641899.1| hypothetical protein BRLA_c31460 [Brevibacillus laterosporus LMG
15441]
gi|338773805|gb|EGP33336.1| hypothetical protein BRLA_c31460 [Brevibacillus laterosporus LMG
15441]
Length = 188
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R + L + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVISGEHRGRSLAAVPGTSTRPTTDKVKESIFNMI-------GPYFDGEWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG ++ FV+ D + V
Sbjct: 54 GLGIEALSRGAAKAIFVDRDNKAFNTV 80
>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
Length = 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG V FV+ D V V
Sbjct: 55 LGIEALSRGIERVIFVDHDRKAVQTV 80
>gi|335043411|ref|ZP_08536438.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
gi|333790025|gb|EGL55907.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
Length = 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 97 EKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP 156
+++ + RT L+++GG R +KL P+ +RP + + F+ LQ G
Sbjct: 3 KQNNKARTGAGTLRIIGGIWRGRKLGFPEVEGLRPTSDRTRETVFNWLQPHIGAS----- 57
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187
R LDL++G+G++G EA SRG +EV VE D
Sbjct: 58 -RCLDLFAGSGALGFEAASRGAAEVVLVEND 87
>gi|373494916|ref|ZP_09585511.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
gi|371967052|gb|EHO84529.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
Length = 193
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +KL +P G ++RP + VK + F+IL + +DL++GTG+
Sbjct: 1 MRIITGKYRGRKLETPFGNEIRPTSDKVKESIFNILM------CDIEDAVCVDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG + F +
Sbjct: 55 LGLEALSRGALKCWFCD 71
>gi|42520687|ref|NP_966602.1| methyltransferase [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99036111|ref|ZP_01315143.1| hypothetical protein Wendoof_01000006 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42410427|gb|AAS14536.1| methyltransferase, putative [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 182
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ + K + RP M +V+ A F IL S + LDL+ G+G
Sbjct: 1 MLRIIAGKYRGRKITTGKHLAARPTMSIVREAIFSILSSR----KPIYNLNVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S EA+SRG V+ D +
Sbjct: 57 SFSFEALSRGAKHAFMVDSDYY 78
>gi|294778215|ref|ZP_06743641.1| RNA methyltransferase, RsmD family [Bacteroides vulgatus PC510]
gi|319644294|ref|ZP_07998788.1| methyltransferase [Bacteroides sp. 3_1_40A]
gi|345519676|ref|ZP_08799091.1| hypothetical protein BSFG_02061 [Bacteroides sp. 4_3_47FAA]
gi|423312545|ref|ZP_17290482.1| RsmD family RNA methyltransferase [Bacteroides vulgatus CL09T03C04]
gi|254835605|gb|EET15914.1| hypothetical protein BSFG_02061 [Bacteroides sp. 4_3_47FAA]
gi|294447843|gb|EFG16417.1| RNA methyltransferase, RsmD family [Bacteroides vulgatus PC510]
gi|317384189|gb|EFV65162.1| methyltransferase [Bacteroides sp. 3_1_40A]
gi|392688233|gb|EIY81522.1| RsmD family RNA methyltransferase [Bacteroides vulgatus CL09T03C04]
Length = 186
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFEDGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
>gi|222150995|ref|YP_002560148.1| hypothetical protein MCCL_0745 [Macrococcus caseolyticus JCSC5402]
gi|222120117|dbj|BAH17452.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 178
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK +R L + KG+ RP + +K F+I+ G LDL++G+G+
Sbjct: 1 MRVIGGKYKRFPLEALKGVTSRPTTDKIKETMFNIIGPL--------EGSGLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVE 185
+GIE ISRG + V FV+
Sbjct: 53 LGIEGISRGLTHVVFVD 69
>gi|357026645|ref|ZP_09088740.1| methyltransferase [Mesorhizobium amorphae CCNWGS0123]
gi|355541474|gb|EHH10655.1| methyltransferase [Mesorhizobium amorphae CCNWGS0123]
Length = 184
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRDHAIRPTTDRTREAVFNVLAHR--FADKLAGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+G+EA+SRG S F+E
Sbjct: 59 LGLEALSRGASYGVFIE 75
>gi|339443351|ref|YP_004709356.1| N6-adenine-specific methylase [Clostridium sp. SY8519]
gi|338902752|dbj|BAK48254.1| N6-adenine-specific methylase [Clostridium sp. SY8519]
Length = 186
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR L S G D RP + +K F+++Q+ P S+ LDL++G+GS
Sbjct: 1 MRIIAGTARSLPLKSLPGSDTRPTTDRIKETLFNMIQTR--VPGSV----VLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
+ +EA+SRG + VE + + V+ N+ +T F
Sbjct: 55 LALEAVSRGAEKAVLVE-NSRKAAAVIQENINFTKF 89
>gi|227893365|ref|ZP_04011170.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
gi|227864780|gb|EEJ72201.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
Length = 183
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDVSSIH-TVRVETFLERAEQ 224
+GIEA+SRG + V+++ S ++ N+ T DV ++ +V ++ F E E+
Sbjct: 55 LGIEAVSRGYDKASLVDINHAACS-IIKKNVALTKEENRFDVYNMRSSVALKLFAENGER 113
Query: 225 F 225
F
Sbjct: 114 F 114
>gi|153807396|ref|ZP_01960064.1| hypothetical protein BACCAC_01675 [Bacteroides caccae ATCC 43185]
gi|149129758|gb|EDM20970.1| putative RNA methyltransferase, RsmD family [Bacteroides caccae
ATCC 43185]
Length = 177
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ IE +SRGC V VE +P
Sbjct: 58 ISIELVSRGCDRVISVEKEP 77
>gi|395242934|ref|ZP_10419922.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
gi|394484754|emb|CCI80930.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
Length = 182
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLYTLKSNSTRPTSDKVKESVFNSLGQFFSG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++GIEA+SRG + V+++ N++ N+ T
Sbjct: 54 ALGIEAVSRGYDHAYLVDINSQ-ACNIIKKNVALT 87
>gi|332300619|ref|YP_004442540.1| hypothetical protein Poras_1439 [Porphyromonas asaccharolytica DSM
20707]
gi|332177682|gb|AEE13372.1| Protein of unknown function methylase putative [Porphyromonas
asaccharolytica DSM 20707]
Length = 186
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R++L PKG+ +RP ++ K A F+ L + + R LDL++G G
Sbjct: 1 MRIIAGKYGRRRLSPPKGLTLRPTTDIAKEALFNSLSAQ----YDVEGVRVLDLFAGIGG 56
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+ +E +SRG + V +E P
Sbjct: 57 ISLEFVSRGAASVTSIEKHP 76
>gi|312143898|ref|YP_003995344.1| methyltransferase [Halanaerobium hydrogeniformans]
gi|311904549|gb|ADQ14990.1| methyltransferase [Halanaerobium hydrogeniformans]
Length = 179
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A +L S KG +VRP ++ VK + F ++ + LDL++G G+
Sbjct: 1 MRVIAGTAGGIQLKSIKGRNVRPTLDRVKESLFSMI------AYYIVDAVVLDLFAGFGN 54
Query: 169 VGIEAISRGCSEVHFVEM 186
+GIEA+SRG E FVE+
Sbjct: 55 LGIEALSRGAKEAEFVEI 72
>gi|300783710|ref|YP_003764001.1| methyltransferase [Amycolatopsis mediterranei U32]
gi|399535594|ref|YP_006548256.1| methyltransferase [Amycolatopsis mediterranei S699]
gi|299793224|gb|ADJ43599.1| methyltransferase [Amycolatopsis mediterranei U32]
gi|398316364|gb|AFO75311.1| methyltransferase [Amycolatopsis mediterranei S699]
Length = 182
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG 177
R+ + PKG RP E V+ A F+ L +AG L R LDLY+G+G++G+EA+SRG
Sbjct: 8 RRLKVPPKG--TRPTSERVREALFNALGTAG----ELDGARVLDLYAGSGALGLEALSRG 61
Query: 178 CSEVHFVEMD 187
++ FVE D
Sbjct: 62 AADALFVESD 71
>gi|42518924|ref|NP_964854.1| hypothetical protein LJ0998 [Lactobacillus johnsonii NCC 533]
gi|41583210|gb|AAS08820.1| hypothetical protein LJ_0998 [Lactobacillus johnsonii NCC 533]
Length = 182
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++GIEA+SRG E V++ V+ N+E T
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELT 87
>gi|269127643|ref|YP_003301013.1| methyltransferase [Thermomonospora curvata DSM 43183]
gi|268312601|gb|ACY98975.1| methyltransferase [Thermomonospora curvata DSM 43183]
Length = 186
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G AR ++L P G D RP + + F + G L R DL++G+G+V
Sbjct: 3 RVIAGTARGRRLAVPAGRDTRPTSDRAREGLF---ATVGALLGPLEGLRVADLFAGSGAV 59
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
G+EA+SRG + VE P V V+ N+E G L + + RVE L R
Sbjct: 60 GLEALSRGAACALLVESHPRAV-KVIRRNIETLG-LPGAHLVADRVERVLRR 109
>gi|227889783|ref|ZP_04007588.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
gi|227849647|gb|EEJ59733.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
Length = 182
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++GIEA+SRG E V++ V+ N+E T
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELT 87
>gi|289207359|ref|YP_003459425.1| methyltransferase [Thioalkalivibrio sp. K90mix]
gi|288942990|gb|ADC70689.1| methyltransferase [Thioalkalivibrio sp. K90mix]
Length = 203
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG RR+ L P +RP + + F+ LQ L R LDLY+GTG+
Sbjct: 16 IRIIGGAWRRQWLPVPSVGGLRPTADAQRETLFNWLQP------QLPGARVLDLYAGTGA 69
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G EA SRG EV VE D
Sbjct: 70 LGFEAASRGAREVWLVERD 88
>gi|300727781|ref|ZP_07061163.1| RNA methyltransferase, RsmD family [Prevotella bryantii B14]
gi|299774934|gb|EFI71544.1| RNA methyltransferase, RsmD family [Prevotella bryantii B14]
Length = 198
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + P RP + K F++LQ L LDL++GTGS
Sbjct: 1 MRIITGKYKGRHFDVPHSFKARPTTDFAKENIFNVLQGY----MDLEDTMALDLFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ +E +SRGC +V VE D
Sbjct: 57 ISLELVSRGCKQVVSVEAD 75
>gi|350567024|ref|ZP_08935634.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus indolicus ATCC 29427]
gi|348659878|gb|EGY76597.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus indolicus ATCC 29427]
Length = 183
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KL +P G RP + VK F+IL + +DL+SGTG
Sbjct: 6 MRVISGSKRGLKLQTPIGYGTRPTEDRVKENIFNILGQM------FYDAKVMDLFSGTGQ 59
Query: 169 VGIEAISRGCSEVHFVE 185
+GIE +SRG V FVE
Sbjct: 60 IGIEFLSRGAKSVIFVE 76
>gi|296110645|ref|YP_003621026.1| N6-adenine-specific methylase () [Leuconostoc kimchii IMSNU 11154]
gi|339490263|ref|YP_004704768.1| N-6 adenine-specific DNA methylase [Leuconostoc sp. C2]
gi|295832176|gb|ADG40057.1| N6-adenine-specific methylase (putative) [Leuconostoc kimchii IMSNU
11154]
gi|338851935|gb|AEJ30145.1| N6-adenine-specific methylase (putative) [Leuconostoc sp. C2]
Length = 185
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R +L + G RP + VK A F +L L G LDLY+GTG
Sbjct: 1 MRVVSGRFRGTRLEAVAGDKTRPTTDKVKEAMFSMLMP------YLDDGEVLDLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
+GIEA+SRG S V+ + V+ N+E T
Sbjct: 55 LGIEAVSRGMSHATLVDRQYQAI-KVIHSNIEKT 87
>gi|392428286|ref|YP_006469297.1| hypothetical protein SCIM_0395 [Streptococcus intermedius JTH08]
gi|391757432|dbj|BAM23049.1| conserved hypothetical protein [Streptococcus intermedius JTH08]
Length = 201
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 22 FMRVVAGKYGGRPLKTLAGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 75
Query: 168 SVGIEAISRGCSEVHFVEMD 187
S+ IEAISRG + VE D
Sbjct: 76 SLAIEAISRGMASAILVEKD 95
>gi|240047738|ref|YP_002961126.1| hypothetical protein MCJ_006280 [Mycoplasma conjunctivae HRC/581]
gi|239985310|emb|CAT05323.1| HYPOTHETICAL Ribosomal RNA small subunit methyltransferase D
[Mycoplasma conjunctivae]
Length = 184
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK RR + P RPM + V+ + F LQ ++ LDL++G+G
Sbjct: 1 MIRIIAGKYRRALIKDPDFSITRPMSDRVRESIFSSLQ------FYIQNKSVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL 195
++GIEA+SRG V E++ + N+L
Sbjct: 55 AIGIEAVSRGAKFVLASELNKKIYHNIL 82
>gi|58697577|ref|ZP_00372801.1| methyltransferase, putative [Wolbachia endosymbiont of Drosophila
simulans]
gi|58698933|ref|ZP_00373794.1| methyltransferase, putative [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225630556|ref|YP_002727347.1| methyltransferase, putative [Wolbachia sp. wRi]
gi|58534550|gb|EAL58688.1| methyltransferase, putative [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535925|gb|EAL59681.1| methyltransferase, putative [Wolbachia endosymbiont of Drosophila
simulans]
gi|225592537|gb|ACN95556.1| methyltransferase, putative [Wolbachia sp. wRi]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ + K + RP M +V+ A F++L S + LDL+ G+G
Sbjct: 1 MLRIIAGKYRGRKITTGKHLAARPTMSIVREAIFNMLSSR----KPIYNLNVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S EA+SRG V+ D +
Sbjct: 57 SFSFEALSRGAKHAFMVDSDYY 78
>gi|325287471|ref|YP_004263261.1| methyltransferase [Cellulophaga lytica DSM 7489]
gi|324322925|gb|ADY30390.1| methyltransferase [Cellulophaga lytica DSM 7489]
Length = 183
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L +PK + VRP ++ K A F+IL + LDL++GTG+
Sbjct: 1 MRIISGKFKSKRLTAPKKLPVRPTTDMAKEALFNILNNH----YYFEDISVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ E SRG + V+ D V N +LE +++S+I + V +LER
Sbjct: 57 ISYEFASRGTENIICVDADYGCVKFINQTAKDLE----VNISTIKS-DVFKYLER 106
>gi|393770587|ref|ZP_10359066.1| N6-adenine-specific methylase [Novosphingobium sp. Rr 2-17]
gi|392723934|gb|EIZ81320.1| N6-adenine-specific methylase [Novosphingobium sp. Rr 2-17]
Length = 186
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G+ R +KL++P+G RP + + F +L S G L DL++G+G+
Sbjct: 5 LRIIAGEWRGRKLVAPEGETTRPTADRTRETLFSMLVSRLGSFEDLTVA---DLFAGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+G+EA+SRG + FV+ D V V+ N+ LD S VR + L
Sbjct: 62 LGLEALSRGAAHCLFVDQDAAAV-RVIRRNI---ASLDAESRSDVRAGSVL 108
>gi|296119650|ref|ZP_06838208.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
gi|295967533|gb|EFG80800.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
Length = 189
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR + ++ P+ RP + + F L G S R LDL++G+G
Sbjct: 1 MTRIIAGQARGRTIIVPE-EGTRPTSDRAREGLFSSLAVRWGFEGS----RVLDLFAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA--EQF 225
++G+EA SRG +EVH V+ + N+ N G V IH ++ T+L +A E F
Sbjct: 56 ALGLEAASRGAAEVHLVDNSAQAIKNI-THNAGVVGHPKV-HIHQLQASTYLAQAPREHF 113
>gi|291288906|ref|YP_003505722.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
gi|290886066|gb|ADD69766.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L++PK +RP + K A F L + + LDL+ GTG+
Sbjct: 1 MKIISGSFKNRQLVTPKDSSIRPTTDKAKNAIFSSLFD------KVHGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEM 186
G+EA+SRG S F+++
Sbjct: 55 FGLEALSRGASHCTFIDI 72
>gi|421491258|ref|ZP_15938624.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
gi|400371360|gb|EJP24319.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
Length = 179
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMD 187
+ IEAISRG + VE D
Sbjct: 55 LAIEAISRGMASAVLVEKD 73
>gi|227548104|ref|ZP_03978153.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
44291]
gi|227079830|gb|EEI17793.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
44291]
Length = 194
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 110 QVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR +K+ + P+G RP + + F LQ G LDL++G+G+
Sbjct: 3 RIISGEARGRKIKVPPEG--TRPTSDRAREGLFSSLQVRFGFIDQT----VLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+G+EA SRG SEV VE DP V V+ N G +V + V+ T+L RA
Sbjct: 57 LGLEAASRGASEVVLVENDPRAV-KVIEYNASVVGHPNV-HVEPVKASTYLARA 108
>gi|73667406|ref|YP_303422.1| hypothetical protein Ecaj_0793 [Ehrlichia canis str. Jake]
gi|72394547|gb|AAZ68824.1| Conserved hypothetical protein 95 [Ehrlichia canis str. Jake]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L++ GK R +++ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNV 194
S+ EA+SRG ++++ + +S V
Sbjct: 57 SLSFEALSRGAESALLIDINHYNLSLV 83
>gi|393780321|ref|ZP_10368539.1| putative RNA methyltransferase, RsmD family [Capnocytophaga sp.
oral taxon 412 str. F0487]
gi|392608793|gb|EIW91631.1| putative RNA methyltransferase, RsmD family [Capnocytophaga sp.
oral taxon 412 str. F0487]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L++P + VRP + K A F+IL + LDL++GTG+
Sbjct: 1 MRIISGKNKGKQLIAPNKLPVRPTTDFAKEALFNILNNY----YYFEELSVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEV 181
+ E SRGC V
Sbjct: 57 ISYEFASRGCPSV 69
>gi|372223386|ref|ZP_09501807.1| hypothetical protein MzeaS_13780 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L++PK + VRP ++ K + F+IL+++ + + LDL++GTG+
Sbjct: 1 MRIISGKYKGKRLVAPKKLPVRPTTDMAKESLFNILRNS----YYIEDLQVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+ E SRG ++ V+ + + E ++V I + FLER
Sbjct: 57 ISFEFASRGTKQITAVDQHMGCIKYIQKTAQELDFSIEVIKIDVYK---FLER 106
>gi|256820815|ref|YP_003142094.1| hypothetical protein Coch_1989 [Capnocytophaga ochracea DSM 7271]
gi|256582398|gb|ACU93533.1| Protein of unknown function methylase putative [Capnocytophaga
ochracea DSM 7271]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L++P + VRP + K A F+IL + LDL++GTG+
Sbjct: 1 MRIISGKNKGKQLIAPNKLPVRPTTDFAKEALFNILNNY----YYFEELSVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEV 181
+ E SRGC V
Sbjct: 57 ISYEFASRGCPSV 69
>gi|88607622|ref|YP_504707.1| putative methyltransferase [Anaplasma phagocytophilum HZ]
gi|88598685|gb|ABD44155.1| putative methyltransferase [Anaplasma phagocytophilum HZ]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GK R +++ + +D RP M +++ A F+IL++ S+ + D++ G+G
Sbjct: 1 MIRITSGKYRGRRIFTGNSLDARPAMSIIREAIFNILRAY----ISIEDAQVCDIFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
S+ EA+SRG V+++
Sbjct: 57 SLSFEALSRGAKHACLVDINA 77
>gi|373450791|ref|ZP_09542754.1| putative methyltransferase (RsmD family) [Wolbachia pipientis
wAlbB]
gi|371931997|emb|CCE77767.1| putative methyltransferase (RsmD family) [Wolbachia pipientis
wAlbB]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+V+ GK R +K+ + K + RP M V+ A F IL S + LDL+ G+G
Sbjct: 1 MLRVIAGKYRGRKITTGKNLSARPTMSSVREAIFSILSSR----KPIYNLNVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPW 189
S EA+SRG V+ D +
Sbjct: 57 SFSFEALSRGAKHAFMVDSDYY 78
>gi|349611361|ref|ZP_08890598.1| RsmD family RNA methyltransferase [Lactobacillus sp. 7_1_47FAA]
gi|348609287|gb|EGY59246.1| RsmD family RNA methyltransferase [Lactobacillus sp. 7_1_47FAA]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK R+ L + K RP + VK + F+ + Q G GR LDLY+G+G
Sbjct: 1 MRIISGKYARRNLFTLKSNLTRPTSDKVKESLFNAMGQFFNG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202
++G+EA+SRG FV+++ + ++ N+ T
Sbjct: 54 ALGLEAVSRGYDSAVFVDIN-YAACEIIKKNILLT 87
>gi|85374351|ref|YP_458413.1| N6-adenine-specific methylase [Erythrobacter litoralis HTCC2594]
gi|84787434|gb|ABC63616.1| N6-adenine-specific methylase [Erythrobacter litoralis HTCC2594]
Length = 182
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL++P+G RP + + F +L S G L +DL++G+G+
Sbjct: 1 MRIIAGEWRGRKLVAPRGDGTRPTADRTRETLFSMLTSRLGSFEGLSA---VDLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMD 187
+G+EA+SRG + FVE D
Sbjct: 58 LGLEALSRGAAHCLFVEQD 76
>gi|302871972|ref|YP_003840608.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
gi|302574831|gb|ADL42622.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
Length = 184
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+
Sbjct: 56 VGIEFLSRGAKEVVFVEKDVRCI-NLIKENLKNLNLLKRARIIKADVIRFLK 106
>gi|262198143|ref|YP_003269352.1| methyltransferase [Haliangium ochraceum DSM 14365]
gi|262081490|gb|ACY17459.1| methyltransferase [Haliangium ochraceum DSM 14365]
Length = 191
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG ++LL+P G RP + V+ A F+IL G PA R LD+ +G+G
Sbjct: 1 MRIIGGHLGGRRLLAPPGDGTRPTSDRVREALFNIL---GPPPAG---ARVLDVCAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDP 188
+G+EA+SRG V F+E P
Sbjct: 55 LGLEALSRGAEAVCFIERAP 74
>gi|123968697|ref|YP_001009555.1| N6-adenine-specific methylase [Prochlorococcus marinus str. AS9601]
gi|123198807|gb|ABM70448.1| N6-adenine-specific methylase [Prochlorococcus marinus str. AS9601]
Length = 199
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK KL SP + RP V+ A F+IL + WLDL+SGTG+
Sbjct: 5 LRLIGGK----KLQSPNNSNTRPTTLRVREAIFNILN------KRVENSNWLDLFSGTGT 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+ EA + G S++ +E + + S + + NL
Sbjct: 55 ISCEAYNHGASKILAIEKNK-INSKICLENL 84
>gi|395792004|ref|ZP_10471443.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714054|ref|ZP_17688313.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421201|gb|EJF87457.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432923|gb|EJF98897.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 185
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNILASRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FVE
Sbjct: 59 LGIEALSRGAKAAVFVE 75
>gi|423242277|ref|ZP_17223386.1| RsmD family RNA methyltransferase [Bacteroides dorei CL03T12C01]
gi|392639563|gb|EIY33379.1| RsmD family RNA methyltransferase [Bacteroides dorei CL03T12C01]
Length = 186
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A +DL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------MDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
+GTGS+ IE +SRGC V VE DP +S +
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFI 84
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,625,234,681
Number of Sequences: 23463169
Number of extensions: 157306335
Number of successful extensions: 466164
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 1920
Number of HSP's that attempted gapping in prelim test: 462313
Number of HSP's gapped (non-prelim): 3569
length of query: 227
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 90
effective length of database: 9,144,741,214
effective search space: 823026709260
effective search space used: 823026709260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)