BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027179
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical
Protein Ttha0928
Length = 171
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++LGGKAR L P RP ++ A FD L+ P R GR+LD ++G+G
Sbjct: 1 VVRILGGKARGVALKVPA--SARPSPVRLRKALFDYLRLR--YP---RRGRFLDPFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+VG+EA S G V VE DP V +L N+ TG + + + VE FL A+
Sbjct: 54 AVGLEAASEGWEAV-LVEKDPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK 105
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 108 LLQVLGGKAR-RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++GG A R+ + P+G RP + V+ + F+I+ + L LDLY+G+
Sbjct: 2 MTRIIGGVAGGRRIAVPPRG--TRPTTDRVRESLFNIVTAR----RDLTGLAVLDLYAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMD 187
G++G+EA+SRG + V FVE D
Sbjct: 56 GALGLEALSRGAASVLFVESD 76
>pdb|2FPO|A Chain A, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|B Chain B, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|C Chain C, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|D Chain D, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|E Chain E, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|F Chain F, Putative Methyltransferase Yhhf From Escherichia Coli
Length = 202
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 14 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SR + +E D VS LI NL
Sbjct: 68 LGLEALSRYAAGATLIEXDR-AVSQQLIKNL 97
>pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102.
pdb|2IFT|B Chain B, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102
Length = 201
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +RP + VK F+ L + LD ++G+GS
Sbjct: 13 VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLX------PYIHQSECLDGFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+G EA+SR +V F+E+D V+N L NL+
Sbjct: 67 LGFEALSRQAKKVTFLELDK-TVANQLKKNLQ 97
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185
G RP + V+GA F+ + GR LDL++G+G + IEA+SRG S VE
Sbjct: 8 GKITRPTSDKVRGAIFNXIGP------YFNGGRVLDLFAGSGGLAIEAVSRGXSAAVLVE 61
Query: 186 MD 187
+
Sbjct: 62 KN 63
>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
pdb|2FHP|B Chain B, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
Length = 187
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G+ ++L + G + RP + VK + F+ + G LDLYSG+G +
Sbjct: 5 RVISGEYGGRRLKALDGDNTRPTTDKVKESIFNXI------GPYFDGGXALDLYSGSGGL 58
Query: 170 GIEAISRG-----CSEVHFVEM 186
IEA+SRG C E +F +
Sbjct: 59 AIEAVSRGXDKSICIEKNFAAL 80
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFD 142
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFD 267
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 312 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 362
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 312 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 362
>pdb|4HJY|A Chain A, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJY|B Chain B, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|A Chain A, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|B Chain B, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
Length = 206
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 142 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 194
>pdb|3T36|A Chain A, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|B Chain B, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|C Chain C, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|D Chain D, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|E Chain E, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|4HJV|A Chain A, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|B Chain B, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|C Chain C, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|D Chain D, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|E Chain E, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
Length = 203
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 139 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 191
>pdb|2Y8P|A Chain A, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
pdb|2Y8P|B Chain B, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
Length = 194
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 122 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 174
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--- 214
R L+ +S TG + A+ GCS+V V+ + ++ N+E LD+S VR
Sbjct: 223 RVLNCFSYTGGFAVSALXGGCSQVVSVDTSQEAL-DIARQNVELNK-LDLSKAEFVRDDV 280
Query: 215 ---VETFLERAEQF 225
+ T+ +R E+F
Sbjct: 281 FKLLRTYRDRGEKF 294
>pdb|1LAF|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-binding
Protein
pdb|1LAG|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|1LAH|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|2LAO|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 238
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 90 SKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ 145
S L ++D++ QE + +L A +L++ KG ++P +E +KG +LQ
Sbjct: 69 SSLSITDKRQQEIAFSDKLY------AADSRLIAAKGSPIQPTLESLKGKHVGVLQ 118
>pdb|1LST|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 239
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 90 SKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ 145
S L ++D++ QE + +L A +L++ KG ++P +E +KG +LQ
Sbjct: 69 SSLSITDKRQQEIAFSDKLY------AADSRLIAAKGSPIQPTLESLKGKHVGVLQ 118
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 135 VVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISR--GCSEVHFVEMDP--- 188
++G+ +L A A RPG R LD ++G+G++ +EA S S V+ ++D
Sbjct: 182 ALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL 241
Query: 189 -WVVSNVLIPNLEWTGFLDVSSIHTVR 214
L L W FL + H R
Sbjct: 242 GLAREAALASGLSWIRFLRADARHLPR 268
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
DL +GTG + A+ G EV VE+D V +VLI NL
Sbjct: 55 DLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENL 92
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 55 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 105
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 62 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,227,964
Number of Sequences: 62578
Number of extensions: 265109
Number of successful extensions: 632
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 26
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)