BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027179
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34331|YLBH_BACSU Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain
168) GN=ylbH PE=3 SV=2
Length = 184
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+GIEA+SRG FV+ D + V
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTV 80
>sp|P0ADX9|RSMD_ECOLI Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli
(strain K12) GN=rsmD PE=1 SV=1
Length = 198
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 12 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SR + +EMD VS LI NL
Sbjct: 66 LGLEALSRYAAGATLIEMDR-AVSQQLIKNL 95
>sp|P0ADY0|RSMD_ECOL6 Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmD PE=3
SV=1
Length = 198
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 12 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SR + +EMD VS LI NL
Sbjct: 66 LGLEALSRYAAGATLIEMDR-AVSQQLIKNL 95
>sp|Q9ZD05|Y545_RICPR Uncharacterized methylase RP545 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP545 PE=4 SV=1
Length = 236
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL--RPGRWLDLYSG 165
+L+++ GK + + + + + + RP +K A F IL S L + LDL++G
Sbjct: 1 MLKIISGKYKNQIIPTAQNIKYRPSTGKLKEAIFSILTSGEFIGNKLFNENTQILDLFAG 60
Query: 166 TGSVGIEAISRGCSEVHFVEMDPW 189
+GS+ E++SRG +++D +
Sbjct: 61 SGSLAFESLSRGAGFATLIDIDTY 84
>sp|P44869|RSMD_HAEIN Ribosomal RNA small subunit methyltransferase D OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmD PE=1 SV=1
Length = 193
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +RP + VK F+ L + LD ++G+GS
Sbjct: 13 VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLM------PYIHQSECLDGFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
+G EA+SR +V F+E+D V+N L NL+
Sbjct: 67 LGFEALSRQAKKVTFLELDK-TVANQLKKNLQ 97
>sp|Q89B29|RSMD_BUCBP Ribosomal RNA small subunit methyltransferase D OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rsmD PE=3 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ GK + ++ ++RP ++ F+ + + ++ LD +SG+G+
Sbjct: 13 IQIISGKYKNSRIPIINTKNLRPTTNYIRETLFNWISNE-----KIKKSHCLDCFSGSGA 67
Query: 169 VGIEAISR-----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218
+GIEA+SR C E+ + + + +LI L ++++H +R T
Sbjct: 68 LGIEAVSRYALSSTCIEIQ--KKAIFFLKKILIK-------LSITNVHVIRANTI 113
>sp|Q2KIJ2|MET18_BOVIN Histidine protein methyltransferase 1 homolog OS=Bos taurus
GN=METTL18 PE=2 SV=1
Length = 373
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
FD+L + LDL G+G +GI A+ G E+HF + + V+ V +PN
Sbjct: 171 CTFDLLAYLTKAKVKFAGKKVLDLGCGSGLLGIMALKGGAKEIHFQDYNSVVIDEVTLPN 230
Query: 199 L 199
+
Sbjct: 231 V 231
>sp|O95568|MET18_HUMAN Histidine protein methyltransferase 1 homolog OS=Homo sapiens
GN=METTL18 PE=1 SV=1
Length = 372
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
FD+L + LDL G+G +GI A G E+HF + + V+ V +PN
Sbjct: 171 CTFDLLAYFTKAKVKFAGKKVLDLGCGSGLLGITAFKGGSKEIHFQDYNSMVIDEVTLPN 230
Query: 199 L 199
+
Sbjct: 231 V 231
>sp|B1KJM4|KYNU_SHEWM Kynureninase OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=kynU PE=3 SV=1
Length = 430
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 36/171 (21%)
Query: 4 VSSSPILSPSSGRL-SSNSS---------TNLPLFSTSFTKPISQKRYPLIVFSYKSGTG 53
VS IL+P+S L +N S TNL L SF KP + KR+ +I S
Sbjct: 78 VSYHEILTPASAELVGANESEVVCMNSLTTNLHLLFVSFYKP-TAKRFKII-----SEAK 131
Query: 54 LTSEDKKEL---LKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDE--KSQEERTTHRL 108
+ D+ L ++ +GLDPD+ + E SP+ G L+ ++ + +
Sbjct: 132 MFPSDRYLLETQVRHHGLDPDDAIIEISPR-------EGEYLIREEDIIAAVNDNADELA 184
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKG----AAFDILQSAGGCPASLR 155
L GG + + D++ + + G A FD+ + G P L
Sbjct: 185 LLFFGG----VNYFTGQLFDMQRLTKAAHGVGALAGFDLAHAVGNVPMHLH 231
>sp|Q9CZ09|MET18_MOUSE Histidine protein methyltransferase 1 homolog OS=Mus musculus
GN=Mettl18 PE=2 SV=2
Length = 362
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
FD+L + LDL G+G +GI A G EVHF + + V+ V +PN
Sbjct: 161 CTFDLLTYFTKAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPN 220
Query: 199 L 199
+
Sbjct: 221 V 221
>sp|Q4KM84|MET18_RAT Histidine protein methyltransferase 1 homolog OS=Rattus norvegicus
GN=Mettl18 PE=2 SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198
FD++ + LDL G+G +GI A G EVHF + + V+ V +PN
Sbjct: 161 CTFDLMTYFTKAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPN 220
Query: 199 L 199
+
Sbjct: 221 V 221
>sp|P58106|Y118_CHLMU Uncharacterized RNA methyltransferase TC_0118 OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=TC_0118 PE=3 SV=1
Length = 397
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKG----MDVRP--MMEVVKGAAFDILQSAGGCPASLRP 156
RTTH L G+ K+ LS +G VRP + A I+Q+ +
Sbjct: 197 RTTH-----LYGEQFLKQQLSIEGRSNIFHVRPRSFFQPQSRQAEKIIQTIKDFISPTGE 251
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
LDLY G G++GI ++S ++ VE+ P V++ N++ +++ +E
Sbjct: 252 ETLLDLYCGAGTIGI-SLSPYVKKIIGVELVPDAVASAQ-ENIQ---------LNSANME 300
Query: 217 TFLERAEQFCR 227
FLE A+QFCR
Sbjct: 301 VFLEDAKQFCR 311
>sp|P57136|RSMD_BUCAI Ribosomal RNA small subunit methyltransferase D OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rsmD PE=3 SV=1
Length = 191
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+ ++RP ++ F+ L ++ R LD ++G+G
Sbjct: 12 IYIISGNLKGRKISFKNIPNLRPTTNQIRETLFEWLSKY------IKNSRCLDCFAGSGV 65
Query: 169 VGIEAISRGCSEVHFVEMD 187
+GIEAISR + +E++
Sbjct: 66 LGIEAISRYAAFSTLLEIE 84
>sp|Q8PGR0|AMPA_XANAC Probable cytosol aminopeptidase OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=pepA PE=3 SV=1
Length = 490
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 88 RGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI- 143
RG++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 210 RGAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTG 269
Query: 144 ---LQSAGG 149
L++ GG
Sbjct: 270 GVNLKTQGG 278
>sp|O04292|ATBH9_ARATH Homeobox-leucine zipper protein ATHB-9 OS=Arabidopsis thaliana
GN=ATHB-9 PE=1 SV=1
Length = 841
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 92 LVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCP 151
+VVS ++ Q++ TH+ Q LLS + + G A D +Q G
Sbjct: 140 VVVSGQQRQQQNPTHQHPQ--RDVNNPANLLSIAEETLAEFLCKATGTAVDWVQMIG--- 194
Query: 152 ASLRPGRWLDLYSGTGSVGIEAISRGCSEVH-----FVEMDPWVVSNVLIPNLEWTGFLD 206
++PG S+GI A+SR CS + V ++P V+ +L W F D
Sbjct: 195 --MKPG--------PDSIGIVAVSRNCSGIAARACGLVSLEPMKVAEILKDRPSW--FRD 242
Query: 207 VSSIHTVRV 215
+ T+ V
Sbjct: 243 CRCVETLNV 251
>sp|Q660A8|MURG_BORGA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Borrelia garinii (strain PBi) GN=murG
PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 5 SSSPILSPSSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLK 64
++ PI+S G L +N+ NL LF K+Y I F ++SG L + L+
Sbjct: 189 TNKPIVSVLGGSLGANALNNLALFI---------KKYAEIYFIHQSGKNLNDLREDNYLR 239
Query: 65 RYGLDPDEFLS 75
R + +E S
Sbjct: 240 RQFFNAEEMAS 250
>sp|P55137|Y742_CHLTR Uncharacterized RNA methyltransferase CT_742 OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=CT_742 PE=3 SV=2
Length = 396
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDLY G G +GI ++ ++ VE+ P V++ N++ +++V +E FL
Sbjct: 255 LDLYCGAGIIGI-LLAPYVKKIIGVELVPDAVASAQ-ENIQ---------LNSVDMEVFL 303
Query: 220 ERAEQFCR 227
E A+QFC+
Sbjct: 304 EDAKQFCK 311
>sp|B5E9X4|PRMA_GEOBB Ribosomal protein L11 methyltransferase OS=Geobacter bemidjiensis
(strain Bem / ATCC BAA-1014 / DSM 16622) GN=prmA PE=3
SV=1
Length = 306
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192
+E ++ FD S G P+ + LD+ +G+G + I A G E+ V++DP V
Sbjct: 156 LEALERICFD--ASGGKLPSPV-----LDVGTGSGVLSIAAALLGAKEIVAVDIDPEAV- 207
Query: 193 NVLIPNLEWTGFLDVSSIHTVRVE 216
V + NLE G D+ + T +E
Sbjct: 208 RVTMENLELNGVADLVAASTTSLE 231
>sp|B8IJ00|UBIE_METNO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=ubiE PE=3 SV=1
Length = 252
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 151 PASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187
P+ RP R LD+ GTG + A+ G E H +D
Sbjct: 60 PSRTRPFRLLDVAGGTGDIAFRALQAGGPETHVTVLD 96
>sp|Q87F32|AMPA_XYLFT Probable cytosol aminopeptidase OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=pepA PE=3 SV=1
Length = 491
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G+ + DE + E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 213 GATCEILDESNMEALGMGALLAVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 272
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 273 VNLKTQGG 280
>sp|B2I6L3|AMPA_XYLF2 Probable cytosol aminopeptidase OS=Xylella fastidiosa (strain M23)
GN=pepA PE=3 SV=1
Length = 491
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G+ + DE + E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 213 GATCEILDESNMEALGMGALLAVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 272
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 273 VNLKTQGG 280
>sp|P60093|PRMA_PORGI Ribosomal protein L11 methyltransferase OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=prmA PE=3 SV=1
Length = 290
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193
LR R LD+ GTG + I A G S V +++D W + N
Sbjct: 147 DLRGLRVLDMGCGTGILAILARKLGASSVTAIDIDDWCIRN 187
>sp|Q3BPA1|AMPA_XANC5 Probable cytosol aminopeptidase OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=pepA PE=3 SV=1
Length = 490
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 270
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 271 VNLKTQGG 278
>sp|Q5H4N2|AMPA_XANOR Probable cytosol aminopeptidase OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=pepA PE=1 SV=1
Length = 490
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 270
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 271 VNLKTQGG 278
>sp|B2SPE7|AMPA_XANOP Probable cytosol aminopeptidase OS=Xanthomonas oryzae pv. oryzae
(strain PXO99A) GN=pepA PE=3 SV=1
Length = 490
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 270
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 271 VNLKTQGG 278
>sp|Q2P7G2|AMPA_XANOM Probable cytosol aminopeptidase OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=pepA PE=3 SV=1
Length = 490
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 270
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 271 VNLKTQGG 278
>sp|Q9PH08|AMPA_XYLFA Probable cytosol aminopeptidase OS=Xylella fastidiosa (strain 9a5c)
GN=pepA PE=3 SV=1
Length = 491
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFDI-- 143
G+ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 213 GATCEILDESKMEALGMGALLAVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFDTGG 272
Query: 144 --LQSAGG 149
L++ GG
Sbjct: 273 VNLKTQGG 280
>sp|P15917|LEF_BACAN Lethal factor OS=Bacillus anthracis GN=lef PE=1 SV=2
Length = 809
Score = 30.8 bits (68), Expect = 8.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 345 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 395
>sp|Q20977|STATB_CAEEL Signal transducer and activator of transcription b
OS=Caenorhabditis elegans GN=stat-b PE=2 SV=4
Length = 567
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 54 LTSEDKKELLKRYGLD---PDEFLSEPSPKTRRRKEGRGSKLVVSDEK 98
+T E K+LL LD +EF EP+ T ++K+ RG K D K
Sbjct: 220 ITDETAKQLLNNAYLDIFESEEFCIEPNTSTFQKKDARGIKAKFDDMK 267
>sp|Q06GT4|YCF2_DRIGR Protein ycf2 OS=Drimys granadensis GN=ycf2-A PE=3 SV=1
Length = 2302
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 26 PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDP---DEFLSEPSPKTR 82
P F + I R+P + Y S + L +E +K++ L P DEFL P+ R
Sbjct: 440 PSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNH--LLPEEIDEFLGNPTRSIR 497
Query: 83 RRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFD 142
RGS+L + ++ +LL+ K + + + + + M+++ K +
Sbjct: 498 SFFSDRGSELNLGSNPTERSTRDQKLLK----KQQDVSFVRSRRSENKEMVDIFKIITY- 552
Query: 143 ILQSAGGCPASLRPG 157
+ + P SL PG
Sbjct: 553 LQNTVSIHPISLDPG 567
>sp|C6DY35|PRMA_GEOSM Ribosomal protein L11 methyltransferase OS=Geobacter sp. (strain
M21) GN=prmA PE=3 SV=1
Length = 306
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215
P LD+ +G+G + I A G E+ V++DP V V + NLE G D + T +
Sbjct: 172 PSPVLDVGTGSGVLSIAAALLGAEEIVAVDIDPEAV-RVTVENLELNGMADRVAPSTTSL 230
Query: 216 E 216
E
Sbjct: 231 E 231
>sp|Q64VV4|PRMA_BACFR Ribosomal protein L11 methyltransferase OS=Bacteroides fragilis
(strain YCH46) GN=prmA PE=3 SV=1
Length = 280
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
LD+ GT + I A RG +++D W V N I N+E G D++
Sbjct: 149 LDMGCGTSILAILARMRGAKPCTAIDIDEWCVRNS-IENIELNGVTDIA 196
>sp|Q5LEW2|PRMA_BACFN Ribosomal protein L11 methyltransferase OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=prmA PE=3 SV=1
Length = 280
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
LD+ GT + I A RG +++D W V N I N+E G D++
Sbjct: 149 LDMGCGTSILAILARMRGAKPCTAIDIDEWCVRNS-IENIELNGVTDIA 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,071,595
Number of Sequences: 539616
Number of extensions: 3767268
Number of successful extensions: 12121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 12079
Number of HSP's gapped (non-prelim): 84
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)