Query 027179
Match_columns 227
No_of_seqs 236 out of 1506
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03602 Cons_hypoth95: Conser 99.9 4.3E-25 9.4E-30 187.5 12.1 108 109-222 1-108 (183)
2 COG0742 N6-adenine-specific me 99.9 3.2E-24 6.9E-29 183.4 13.0 109 108-223 1-110 (187)
3 TIGR00095 RNA methyltransferas 99.9 2E-23 4.3E-28 177.6 14.5 112 104-222 4-115 (189)
4 PRK10909 rsmD 16S rRNA m(2)G96 99.9 3.7E-21 8E-26 165.6 14.5 106 108-221 12-117 (199)
5 PRK01544 bifunctional N5-gluta 99.7 6.6E-17 1.4E-21 156.0 8.8 164 47-219 14-202 (506)
6 COG2890 HemK Methylase of poly 99.7 2E-16 4.3E-21 142.5 8.5 112 100-221 60-175 (280)
7 TIGR00536 hemK_fam HemK family 99.6 1.1E-15 2.4E-20 136.8 9.1 114 99-219 61-178 (284)
8 KOG2904 Predicted methyltransf 99.6 3.1E-15 6.6E-20 135.0 9.7 107 101-212 95-205 (328)
9 TIGR03704 PrmC_rel_meth putati 99.6 2.8E-15 6.2E-20 132.6 8.5 111 99-220 33-147 (251)
10 TIGR03533 L3_gln_methyl protei 99.6 4.1E-15 8.9E-20 133.7 9.4 113 99-219 67-185 (284)
11 PRK14966 unknown domain/N5-glu 99.6 8.1E-15 1.8E-19 138.9 11.1 108 99-218 201-312 (423)
12 PRK11805 N5-glutamine S-adenos 99.6 1E-14 2.3E-19 132.7 9.7 113 99-219 79-197 (307)
13 PF06325 PrmA: Ribosomal prote 99.5 1.6E-13 3.5E-18 124.8 8.7 75 126-210 141-215 (295)
14 COG1092 Predicted SAM-dependen 99.5 2.4E-13 5.2E-18 128.0 9.4 70 154-224 216-286 (393)
15 COG2242 CobL Precorrin-6B meth 99.4 4.6E-13 1E-17 114.8 9.7 84 131-223 17-101 (187)
16 COG2263 Predicted RNA methylas 99.4 7.2E-13 1.6E-17 114.0 10.7 86 127-219 21-106 (198)
17 PF05175 MTS: Methyltransferas 99.4 5.6E-13 1.2E-17 110.8 9.1 93 119-220 2-95 (170)
18 PF10672 Methyltrans_SAM: S-ad 99.4 1.5E-12 3.2E-17 118.2 11.0 70 154-224 122-192 (286)
19 COG2264 PrmA Ribosomal protein 99.4 9.6E-13 2.1E-17 120.1 8.6 70 126-205 142-211 (300)
20 PRK09328 N5-glutamine S-adenos 99.3 3.2E-12 6.9E-17 112.0 8.3 110 100-218 57-170 (275)
21 PLN02672 methionine S-methyltr 99.3 5E-12 1.1E-16 131.2 10.4 99 115-220 83-198 (1082)
22 PRK15128 23S rRNA m(5)C1962 me 99.3 2.4E-11 5.1E-16 114.5 12.7 68 154-222 219-287 (396)
23 TIGR02085 meth_trns_rumB 23S r 99.3 2.7E-11 5.9E-16 112.8 12.5 99 116-221 198-296 (374)
24 PRK05031 tRNA (uracil-5-)-meth 99.3 3.4E-11 7.3E-16 111.9 12.7 96 119-222 175-270 (362)
25 PRK00377 cbiT cobalt-precorrin 99.3 2.2E-11 4.8E-16 103.3 10.3 83 131-221 23-107 (198)
26 COG4123 Predicted O-methyltran 99.3 1.3E-11 2.8E-16 110.1 9.0 96 118-223 15-112 (248)
27 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.6E-11 5.6E-16 115.0 11.2 95 116-220 262-359 (443)
28 PRK03522 rumB 23S rRNA methylu 99.3 7.5E-11 1.6E-15 107.2 13.2 94 117-220 139-235 (315)
29 COG2265 TrmA SAM-dependent met 99.3 3.9E-11 8.6E-16 114.3 11.8 95 118-222 260-357 (432)
30 TIGR00138 gidB 16S rRNA methyl 99.3 3.8E-11 8.2E-16 101.5 10.1 86 127-218 16-104 (181)
31 PRK07402 precorrin-6B methylas 99.2 8.3E-11 1.8E-15 99.3 11.7 85 128-221 20-105 (196)
32 PF12847 Methyltransf_18: Meth 99.2 3.8E-11 8.2E-16 91.0 8.7 60 155-215 1-61 (112)
33 PF13659 Methyltransf_26: Meth 99.2 3.2E-11 7E-16 92.3 8.2 63 156-219 1-63 (117)
34 TIGR02143 trmA_only tRNA (urac 99.2 6.4E-11 1.4E-15 109.7 11.2 92 119-221 166-260 (353)
35 PRK11783 rlmL 23S rRNA m(2)G24 99.2 5.9E-11 1.3E-15 118.8 9.8 67 155-222 538-605 (702)
36 TIGR03534 RF_mod_PrmC protein- 99.2 7.3E-11 1.6E-15 101.5 8.8 109 101-219 38-150 (251)
37 PF02475 Met_10: Met-10+ like- 99.2 4.8E-11 1E-15 103.3 7.0 66 154-220 100-166 (200)
38 COG2520 Predicted methyltransf 99.2 5.2E-11 1.1E-15 110.5 7.5 67 154-221 187-253 (341)
39 KOG2187 tRNA uracil-5-methyltr 99.2 5E-11 1.1E-15 114.9 7.5 107 106-222 332-447 (534)
40 TIGR00406 prmA ribosomal prote 99.1 2.8E-10 6.1E-15 102.3 10.6 80 126-215 139-218 (288)
41 TIGR00479 rumA 23S rRNA (uraci 99.1 3.8E-10 8.3E-15 106.3 12.0 96 116-221 257-355 (431)
42 PF05958 tRNA_U5-meth_tr: tRNA 99.1 1.6E-10 3.5E-15 107.0 9.2 92 118-220 164-258 (352)
43 PRK00517 prmA ribosomal protei 99.1 2.5E-10 5.4E-15 100.4 9.5 79 126-214 99-177 (250)
44 PRK08287 cobalt-precorrin-6Y C 99.1 5.2E-10 1.1E-14 93.6 10.8 81 129-218 12-93 (187)
45 PRK14967 putative methyltransf 99.1 5.3E-10 1.1E-14 96.4 10.9 93 116-219 4-97 (223)
46 KOG3420 Predicted RNA methylas 99.1 6.1E-11 1.3E-15 99.1 4.6 87 127-219 23-109 (185)
47 TIGR00308 TRM1 tRNA(guanine-26 99.1 6.2E-10 1.4E-14 104.4 9.7 92 126-222 15-111 (374)
48 PRK04338 N(2),N(2)-dimethylgua 99.0 3.3E-09 7.1E-14 99.7 11.4 64 156-221 58-122 (382)
49 TIGR02469 CbiT precorrin-6Y C5 99.0 3.3E-09 7.1E-14 81.0 9.2 62 155-218 19-81 (124)
50 TIGR00080 pimt protein-L-isoas 99.0 2.2E-09 4.7E-14 92.1 8.9 80 132-220 61-142 (215)
51 PF13847 Methyltransf_31: Meth 99.0 2.4E-09 5.3E-14 86.5 8.4 63 155-220 3-67 (152)
52 PRK13944 protein-L-isoaspartat 99.0 2.5E-09 5.5E-14 91.5 8.9 80 133-220 57-138 (205)
53 PRK15001 SAM-dependent 23S rib 99.0 3.8E-09 8.2E-14 99.3 10.1 94 118-219 198-294 (378)
54 PLN02781 Probable caffeoyl-CoA 98.9 8E-09 1.7E-13 90.6 11.0 68 154-222 67-136 (234)
55 COG2813 RsmC 16S RNA G1207 met 98.9 3E-09 6.5E-14 97.2 8.4 169 40-221 37-223 (300)
56 PF09445 Methyltransf_15: RNA 98.9 2.3E-09 5E-14 90.3 7.0 63 158-222 2-64 (163)
57 TIGR02021 BchM-ChlM magnesium 98.9 7.6E-09 1.7E-13 88.5 10.4 80 131-217 36-115 (219)
58 TIGR00537 hemK_rel_arch HemK-r 98.9 7.2E-09 1.6E-13 86.1 9.8 61 155-219 19-79 (179)
59 PRK00107 gidB 16S rRNA methylt 98.9 4.7E-09 1E-13 89.6 8.6 62 155-218 45-107 (187)
60 smart00650 rADc Ribosomal RNA 98.9 5.9E-09 1.3E-13 86.2 7.6 59 155-218 13-71 (169)
61 PRK11036 putative S-adenosyl-L 98.9 1.3E-08 2.7E-13 89.4 9.9 63 155-219 44-106 (255)
62 PRK13942 protein-L-isoaspartat 98.9 9.4E-09 2E-13 88.6 8.2 80 130-218 58-139 (212)
63 TIGR01177 conserved hypothetic 98.8 1.5E-08 3.3E-13 92.5 10.0 75 133-217 167-241 (329)
64 PRK15451 tRNA cmo(5)U34 methyl 98.8 3.5E-08 7.6E-13 86.6 11.6 62 155-217 56-120 (247)
65 KOG1499 Protein arginine N-met 98.8 6.4E-09 1.4E-13 96.5 7.2 63 154-218 59-121 (346)
66 PF01170 UPF0020: Putative RNA 98.8 1.6E-08 3.6E-13 85.3 8.8 82 129-218 9-100 (179)
67 KOG2730 Methylase [General fun 98.8 8.9E-09 1.9E-13 91.0 7.2 87 129-223 74-160 (263)
68 PRK09489 rsmC 16S ribosomal RN 98.8 2.4E-08 5.2E-13 92.5 9.9 91 118-218 166-257 (342)
69 COG2226 UbiE Methylase involve 98.8 2.2E-08 4.8E-13 88.9 9.2 61 155-217 51-112 (238)
70 PLN02585 magnesium protoporphy 98.8 4.6E-08 9.9E-13 89.9 11.4 85 127-217 120-208 (315)
71 TIGR00091 tRNA (guanine-N(7)-) 98.8 3.1E-08 6.7E-13 84.0 9.0 65 155-221 16-81 (194)
72 PRK11207 tellurite resistance 98.8 3E-08 6.6E-13 84.3 8.8 60 155-217 30-89 (197)
73 PTZ00338 dimethyladenosine tra 98.8 5.4E-08 1.2E-12 88.5 10.7 76 134-218 22-97 (294)
74 PRK07580 Mg-protoporphyrin IX 98.8 7.3E-08 1.6E-12 82.0 10.8 79 131-215 43-121 (230)
75 PRK00121 trmB tRNA (guanine-N( 98.8 3.9E-08 8.5E-13 84.0 9.1 64 155-220 40-104 (202)
76 PRK00274 ksgA 16S ribosomal RN 98.8 2.6E-08 5.6E-13 89.0 8.0 71 135-218 29-99 (272)
77 TIGR02752 MenG_heptapren 2-hep 98.8 5E-08 1.1E-12 83.5 9.4 61 155-217 45-107 (231)
78 PLN02476 O-methyltransferase 98.7 1.1E-07 2.4E-12 86.2 11.9 68 154-222 117-186 (278)
79 PRK14968 putative methyltransf 98.7 5.2E-08 1.1E-12 80.0 8.9 63 155-219 23-86 (188)
80 TIGR00477 tehB tellurite resis 98.7 3.5E-08 7.5E-13 83.8 7.9 58 155-216 30-87 (195)
81 PLN02396 hexaprenyldihydroxybe 98.7 7.5E-08 1.6E-12 88.7 10.6 63 154-218 130-192 (322)
82 PLN02244 tocopherol O-methyltr 98.7 5.2E-08 1.1E-12 89.7 9.5 62 155-217 118-179 (340)
83 TIGR00740 methyltransferase, p 98.7 1.7E-07 3.6E-12 81.4 11.6 63 155-218 53-118 (239)
84 PRK00312 pcm protein-L-isoaspa 98.7 5.8E-08 1.3E-12 82.8 7.5 75 134-218 64-138 (212)
85 PRK12335 tellurite resistance 98.7 1.1E-07 2.3E-12 85.3 9.5 59 155-217 120-178 (287)
86 PF01596 Methyltransf_3: O-met 98.7 3E-07 6.5E-12 79.8 11.4 87 130-223 26-114 (205)
87 PRK13943 protein-L-isoaspartat 98.7 1.2E-07 2.5E-12 87.5 9.3 65 154-220 79-145 (322)
88 PF01209 Ubie_methyltran: ubiE 98.7 7.3E-08 1.6E-12 84.8 7.6 62 154-217 46-109 (233)
89 PLN02336 phosphoethanolamine N 98.6 6.4E-08 1.4E-12 91.9 7.6 92 109-217 228-325 (475)
90 COG2227 UbiG 2-polyprenyl-3-me 98.6 5E-08 1.1E-12 86.8 6.0 63 154-220 58-120 (243)
91 PRK14896 ksgA 16S ribosomal RN 98.6 1.3E-07 2.8E-12 83.8 8.7 59 154-217 28-86 (258)
92 PRK11727 23S rRNA mA1618 methy 98.6 4E-07 8.8E-12 84.0 12.0 105 115-220 70-181 (321)
93 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1.5E-07 3.2E-12 83.8 8.3 64 154-219 70-135 (264)
94 PF02353 CMAS: Mycolic acid cy 98.6 1.6E-07 3.4E-12 84.7 8.0 63 154-218 61-124 (273)
95 PRK14902 16S rRNA methyltransf 98.6 1.7E-07 3.7E-12 89.0 8.5 64 154-219 249-314 (444)
96 PRK04457 spermidine synthase; 98.6 3.7E-07 8E-12 81.5 10.1 67 155-222 66-133 (262)
97 PF05185 PRMT5: PRMT5 arginine 98.6 2E-07 4.3E-12 89.4 8.9 62 156-218 187-253 (448)
98 PF13649 Methyltransf_25: Meth 98.6 1.1E-07 2.3E-12 71.8 5.6 57 159-218 1-61 (101)
99 TIGR02716 C20_methyl_CrtF C-20 98.6 2.2E-07 4.7E-12 83.6 8.6 61 155-217 149-210 (306)
100 COG4076 Predicted RNA methylas 98.6 9.2E-08 2E-12 83.2 5.7 61 155-218 32-92 (252)
101 KOG1500 Protein arginine N-met 98.6 1.3E-07 2.9E-12 88.3 7.0 63 153-217 175-237 (517)
102 PRK00811 spermidine synthase; 98.5 1.5E-06 3.3E-11 78.3 13.0 66 155-221 76-146 (283)
103 PRK04266 fibrillarin; Provisio 98.5 4E-07 8.7E-12 79.9 8.9 60 154-217 71-131 (226)
104 PRK14121 tRNA (guanine-N(7)-)- 98.5 5.9E-07 1.3E-11 85.0 10.6 64 155-220 122-186 (390)
105 PF01135 PCMT: Protein-L-isoas 98.5 2.7E-07 5.8E-12 80.3 7.6 80 133-221 57-138 (209)
106 PRK10742 putative methyltransf 98.5 4.5E-07 9.7E-12 81.2 8.7 64 158-223 91-162 (250)
107 TIGR03438 probable methyltrans 98.5 4.9E-07 1.1E-11 81.9 9.0 67 155-222 63-131 (301)
108 PRK00216 ubiE ubiquinone/menaq 98.5 6E-07 1.3E-11 76.0 9.1 62 155-217 51-114 (239)
109 PRK08317 hypothetical protein; 98.5 8.5E-07 1.8E-11 74.6 9.7 78 130-217 1-80 (241)
110 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.2E-07 9E-12 91.4 9.0 83 129-218 170-295 (702)
111 PLN02233 ubiquinone biosynthes 98.5 7.5E-07 1.6E-11 79.1 9.7 63 154-217 72-138 (261)
112 TIGR00755 ksgA dimethyladenosi 98.5 5.5E-07 1.2E-11 79.3 8.7 71 135-217 16-86 (253)
113 COG2230 Cfa Cyclopropane fatty 98.5 3.6E-07 7.7E-12 83.2 7.7 67 154-221 71-137 (283)
114 PRK10901 16S rRNA methyltransf 98.5 5.4E-07 1.2E-11 85.4 9.0 62 154-218 243-305 (427)
115 PHA03412 putative methyltransf 98.5 4.1E-07 8.9E-12 81.1 7.6 56 155-217 49-108 (241)
116 PRK14901 16S rRNA methyltransf 98.5 6.3E-07 1.4E-11 85.1 9.3 64 154-219 251-316 (434)
117 PF08704 GCD14: tRNA methyltra 98.4 1.3E-06 2.8E-11 78.0 10.1 63 154-217 39-103 (247)
118 PRK11873 arsM arsenite S-adeno 98.4 8.1E-07 1.8E-11 78.3 8.7 62 154-217 76-139 (272)
119 PRK14903 16S rRNA methyltransf 98.4 1.1E-06 2.3E-11 83.8 9.9 63 154-218 236-300 (431)
120 smart00828 PKS_MT Methyltransf 98.4 8.1E-07 1.7E-11 75.7 7.9 59 157-216 1-60 (224)
121 PF03848 TehB: Tellurite resis 98.4 1.2E-06 2.5E-11 75.7 8.9 60 154-217 29-88 (192)
122 PRK15068 tRNA mo(5)U34 methylt 98.4 1.1E-06 2.4E-11 80.6 9.3 63 154-217 121-183 (322)
123 PRK14904 16S rRNA methyltransf 98.4 8.5E-07 1.8E-11 84.4 8.5 64 154-219 249-314 (445)
124 PHA03411 putative methyltransf 98.4 9.3E-07 2E-11 80.3 8.3 58 155-219 64-122 (279)
125 COG1041 Predicted DNA modifica 98.4 6.9E-07 1.5E-11 83.3 7.6 80 128-217 175-257 (347)
126 TIGR00563 rsmB ribosomal RNA s 98.4 1.1E-06 2.3E-11 83.2 8.6 63 154-217 237-300 (426)
127 TIGR03587 Pse_Me-ase pseudamin 98.4 6.9E-07 1.5E-11 76.9 6.5 82 127-217 17-99 (204)
128 PF10294 Methyltransf_16: Puta 98.4 9.4E-07 2E-11 74.1 6.8 64 154-219 44-110 (173)
129 COG2518 Pcm Protein-L-isoaspar 98.4 2.2E-06 4.8E-11 75.0 9.0 76 136-221 60-135 (209)
130 PLN02490 MPBQ/MSBQ methyltrans 98.3 3.3E-06 7.2E-11 78.5 10.6 78 129-217 93-171 (340)
131 PTZ00098 phosphoethanolamine N 98.3 1.9E-06 4E-11 76.7 8.6 59 154-216 51-109 (263)
132 TIGR00417 speE spermidine synt 98.3 1.1E-05 2.5E-10 71.8 13.5 67 155-222 72-142 (270)
133 TIGR03840 TMPT_Se_Te thiopurin 98.3 1.1E-06 2.4E-11 76.3 6.8 59 155-218 34-106 (213)
134 TIGR01444 fkbM_fam methyltrans 98.3 1.7E-06 3.7E-11 68.5 7.3 57 158-216 1-58 (143)
135 PLN02366 spermidine synthase 98.3 1.1E-05 2.5E-10 73.9 13.6 110 108-222 48-161 (308)
136 TIGR00452 methyltransferase, p 98.3 6.3E-06 1.4E-10 75.8 12.0 63 154-217 120-182 (314)
137 PLN02589 caffeoyl-CoA O-methyl 98.3 5.9E-06 1.3E-10 73.7 11.2 68 154-222 78-147 (247)
138 PRK01683 trans-aconitate 2-met 98.3 1.8E-06 3.9E-11 75.3 7.8 57 155-218 31-88 (258)
139 COG0116 Predicted N6-adenine-s 98.3 2.3E-06 4.9E-11 80.8 8.5 80 131-218 174-293 (381)
140 PRK13255 thiopurine S-methyltr 98.3 1.5E-06 3.2E-11 75.8 6.9 59 155-218 37-109 (218)
141 PRK14103 trans-aconitate 2-met 98.3 2.1E-06 4.6E-11 75.2 7.9 56 154-218 28-84 (255)
142 PRK10258 biotin biosynthesis p 98.3 1.9E-06 4.1E-11 75.0 7.3 43 155-199 42-84 (251)
143 COG2519 GCD14 tRNA(1-methylade 98.3 4.7E-06 1E-10 74.8 9.6 66 154-220 93-160 (256)
144 PRK04148 hypothetical protein; 98.3 3.2E-06 6.9E-11 69.3 7.4 53 155-217 16-69 (134)
145 PRK00050 16S rRNA m(4)C1402 me 98.3 4.7E-06 1E-10 76.3 9.3 79 134-223 5-85 (296)
146 PF08241 Methyltransf_11: Meth 98.3 1.3E-06 2.9E-11 63.0 4.6 53 160-217 1-53 (95)
147 cd02440 AdoMet_MTases S-adenos 98.2 5.6E-06 1.2E-10 58.7 7.5 61 158-220 1-61 (107)
148 KOG1270 Methyltransferases [Co 98.2 1.3E-06 2.8E-11 78.9 5.1 47 154-202 88-134 (282)
149 COG3897 Predicted methyltransf 98.2 7.6E-07 1.6E-11 77.6 3.0 59 154-215 78-136 (218)
150 PRK03612 spermidine synthase; 98.2 3.1E-06 6.8E-11 82.4 7.5 67 155-222 297-370 (521)
151 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 9.3E-06 2E-10 68.0 9.1 60 155-218 39-100 (223)
152 PRK05134 bifunctional 3-demeth 98.2 1.3E-05 2.8E-10 68.8 10.0 62 154-219 47-108 (233)
153 TIGR01983 UbiG ubiquinone bios 98.2 9.6E-06 2.1E-10 68.8 9.1 62 155-219 45-106 (224)
154 KOG2915 tRNA(1-methyladenosine 98.2 1.7E-05 3.7E-10 72.3 10.8 98 111-216 50-167 (314)
155 KOG1271 Methyltransferases [Ge 98.2 4E-06 8.7E-11 72.8 6.4 61 157-218 69-130 (227)
156 PRK05785 hypothetical protein; 98.2 8.4E-06 1.8E-10 71.1 8.2 43 155-198 51-93 (226)
157 PRK11705 cyclopropane fatty ac 98.2 1.2E-05 2.5E-10 75.7 9.6 59 154-217 166-224 (383)
158 COG4122 Predicted O-methyltran 98.1 2.1E-05 4.5E-10 69.3 10.6 67 154-221 58-127 (219)
159 TIGR00478 tly hemolysin TlyA f 98.1 8.6E-06 1.9E-10 71.9 8.2 46 154-199 74-119 (228)
160 PLN03075 nicotianamine synthas 98.1 5.8E-06 1.3E-10 75.7 7.3 64 155-219 123-190 (296)
161 COG0030 KsgA Dimethyladenosine 98.1 1E-05 2.2E-10 72.9 8.4 60 154-218 29-88 (259)
162 TIGR02081 metW methionine bios 98.1 9.4E-06 2E-10 68.4 7.7 54 155-217 13-66 (194)
163 KOG3191 Predicted N6-DNA-methy 98.1 1.6E-05 3.5E-10 68.8 9.0 64 155-221 43-108 (209)
164 PF07021 MetW: Methionine bios 98.1 1.1E-05 2.5E-10 69.8 8.1 59 154-221 12-70 (193)
165 TIGR02072 BioC biotin biosynth 98.1 1.8E-05 4E-10 66.7 8.9 57 155-217 34-91 (240)
166 PRK06202 hypothetical protein; 98.0 6.8E-06 1.5E-10 71.0 5.5 48 155-203 60-112 (232)
167 PF02390 Methyltransf_4: Putat 98.0 2.3E-05 4.9E-10 67.3 8.5 66 155-222 17-83 (195)
168 KOG1227 Putative methyltransfe 98.0 1.4E-06 3E-11 80.2 0.7 61 154-215 193-254 (351)
169 PRK06922 hypothetical protein; 98.0 1.9E-05 4.2E-10 79.1 8.7 60 155-217 418-478 (677)
170 PF00398 RrnaAD: Ribosomal RNA 98.0 1.3E-05 2.9E-10 71.1 6.8 73 134-218 16-88 (262)
171 PLN02336 phosphoethanolamine N 98.0 2.2E-05 4.7E-10 74.7 8.2 57 155-216 37-93 (475)
172 PF02384 N6_Mtase: N-6 DNA Met 98.0 1.7E-05 3.8E-10 71.2 7.0 82 128-217 26-116 (311)
173 KOG2078 tRNA modification enzy 98.0 4.7E-06 1E-10 79.6 3.4 66 154-221 248-314 (495)
174 PRK11088 rrmA 23S rRNA methylt 98.0 3.7E-05 8E-10 68.3 8.9 56 155-217 85-144 (272)
175 KOG1540 Ubiquinone biosynthesi 98.0 2.7E-05 5.8E-10 70.5 8.0 63 154-217 99-170 (296)
176 PTZ00146 fibrillarin; Provisio 98.0 2.9E-05 6.3E-10 71.1 7.9 79 131-217 112-192 (293)
177 PLN02823 spermine synthase 97.9 0.00017 3.8E-09 67.0 13.1 67 155-222 103-173 (336)
178 PF04816 DUF633: Family of unk 97.9 3.9E-05 8.5E-10 66.7 7.6 63 159-222 1-64 (205)
179 PF02005 TRM: N2,N2-dimethylgu 97.9 5.2E-05 1.1E-09 71.5 8.6 90 125-220 18-116 (377)
180 COG2521 Predicted archaeal met 97.9 6.9E-06 1.5E-10 73.6 2.5 69 154-223 133-202 (287)
181 PF01555 N6_N4_Mtase: DNA meth 97.9 5.2E-05 1.1E-09 63.3 7.6 59 129-197 173-231 (231)
182 PRK01581 speE spermidine synth 97.8 8.2E-05 1.8E-09 70.2 8.5 68 154-222 149-223 (374)
183 PF08123 DOT1: Histone methyla 97.8 7.3E-05 1.6E-09 65.0 7.4 79 131-217 25-112 (205)
184 PF13489 Methyltransf_23: Meth 97.8 6.9E-05 1.5E-09 59.4 6.5 39 154-194 21-59 (161)
185 KOG0820 Ribosomal RNA adenine 97.8 9.2E-05 2E-09 67.6 7.7 75 134-217 44-118 (315)
186 TIGR02987 met_A_Alw26 type II 97.8 8.1E-05 1.8E-09 72.2 7.9 87 128-216 4-99 (524)
187 PHA01634 hypothetical protein 97.8 7.2E-05 1.6E-09 61.7 6.3 54 153-207 26-79 (156)
188 PF13679 Methyltransf_32: Meth 97.7 0.00011 2.4E-09 59.4 7.3 63 154-217 24-93 (141)
189 PRK11188 rrmJ 23S rRNA methylt 97.7 6.1E-05 1.3E-09 65.0 5.1 35 154-188 50-86 (209)
190 KOG1663 O-methyltransferase [S 97.7 0.00037 8.1E-09 62.0 10.1 69 154-223 72-142 (237)
191 PF05401 NodS: Nodulation prot 97.6 7.5E-05 1.6E-09 65.0 5.2 61 155-220 43-103 (201)
192 PRK11933 yebU rRNA (cytosine-C 97.6 0.00026 5.7E-09 68.6 9.3 63 154-218 112-176 (470)
193 smart00138 MeTrc Methyltransfe 97.6 0.00017 3.7E-09 64.4 7.4 74 122-199 67-152 (264)
194 COG1867 TRM1 N2,N2-dimethylgua 97.6 0.00018 4E-09 67.7 7.6 91 127-223 28-119 (380)
195 PF08242 Methyltransf_12: Meth 97.6 4.3E-06 9.3E-11 62.5 -2.7 45 160-205 1-46 (99)
196 PRK13256 thiopurine S-methyltr 97.6 0.00019 4E-09 63.5 7.0 61 155-218 43-115 (226)
197 COG4106 Tam Trans-aconitate me 97.6 0.0001 2.2E-09 65.5 5.0 74 127-219 14-88 (257)
198 PRK11524 putative methyltransf 97.5 0.00035 7.6E-09 62.8 8.2 58 134-201 195-252 (284)
199 COG0220 Predicted S-adenosylme 97.5 0.00043 9.3E-09 61.2 8.3 64 157-222 50-114 (227)
200 PF08003 Methyltransf_9: Prote 97.5 0.00032 7E-09 64.8 7.2 38 154-191 114-151 (315)
201 PF05724 TPMT: Thiopurine S-me 97.5 0.00017 3.7E-09 63.1 5.0 63 154-218 36-109 (218)
202 KOG1501 Arginine N-methyltrans 97.5 0.00019 4.2E-09 69.3 5.7 57 157-214 68-124 (636)
203 KOG4058 Uncharacterized conser 97.4 0.00022 4.8E-09 60.4 5.1 80 131-218 55-134 (199)
204 PF00145 DNA_methylase: C-5 cy 97.4 0.00029 6.3E-09 62.2 6.1 52 158-218 2-53 (335)
205 KOG2899 Predicted methyltransf 97.4 0.00022 4.8E-09 64.3 5.0 48 154-202 57-105 (288)
206 PF05971 Methyltransf_10: Prot 97.4 0.0005 1.1E-08 63.2 7.1 95 115-213 61-161 (299)
207 PRK13699 putative methylase; P 97.4 0.00084 1.8E-08 58.9 8.3 61 133-203 149-209 (227)
208 TIGR00438 rrmJ cell division p 97.3 0.00034 7.4E-09 58.6 4.9 36 154-189 31-68 (188)
209 cd00315 Cyt_C5_DNA_methylase C 97.3 0.00043 9.3E-09 62.1 5.7 42 158-200 2-43 (275)
210 KOG1661 Protein-L-isoaspartate 97.2 0.00047 1E-08 61.0 5.1 87 128-220 60-158 (237)
211 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.003 6.6E-08 57.1 10.4 66 154-221 84-151 (283)
212 COG4976 Predicted methyltransf 97.1 0.00039 8.4E-09 62.4 3.3 40 156-197 126-165 (287)
213 PF12147 Methyltransf_20: Puta 97.1 0.0042 9.2E-08 57.3 9.7 63 155-218 135-200 (311)
214 PF01564 Spermine_synth: Sperm 97.0 0.0052 1.1E-07 54.5 9.7 69 155-224 76-148 (246)
215 COG0357 GidB Predicted S-adeno 97.0 0.0041 9E-08 54.7 9.0 86 129-220 43-131 (215)
216 TIGR00006 S-adenosyl-methyltra 97.0 0.0077 1.7E-07 55.6 10.5 80 134-223 6-86 (305)
217 COG3963 Phospholipid N-methylt 96.9 0.0042 9E-08 53.5 7.7 77 129-219 29-107 (194)
218 KOG1541 Predicted protein carb 96.8 0.0021 4.6E-08 57.5 5.6 41 155-197 50-90 (270)
219 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0051 1.1E-07 57.1 8.4 62 155-217 62-132 (331)
220 COG0144 Sun tRNA and rRNA cyto 96.8 0.0057 1.2E-07 57.2 8.3 62 154-217 155-219 (355)
221 PF02527 GidB: rRNA small subu 96.7 0.0094 2E-07 51.0 8.7 80 134-217 29-109 (184)
222 PF00891 Methyltransf_2: O-met 96.7 0.0033 7.1E-08 54.4 5.5 55 155-218 100-155 (241)
223 PF11599 AviRa: RRNA methyltra 96.7 0.0013 2.9E-08 58.4 2.9 65 135-203 34-101 (246)
224 COG2384 Predicted SAM-dependen 96.6 0.0031 6.7E-08 55.9 5.1 66 155-221 16-82 (226)
225 PRK01544 bifunctional N5-gluta 96.6 0.0095 2.1E-07 58.1 8.7 64 155-220 347-411 (506)
226 COG0270 Dcm Site-specific DNA 96.6 0.0032 7E-08 57.9 5.1 57 156-219 3-59 (328)
227 COG0421 SpeE Spermidine syntha 96.4 0.047 1E-06 49.8 11.3 68 156-224 77-148 (282)
228 PRK11760 putative 23S rRNA C24 96.3 0.0063 1.4E-07 57.2 5.4 36 154-190 210-245 (357)
229 TIGR00675 dcm DNA-methyltransf 96.3 0.0061 1.3E-07 55.8 5.2 52 159-218 1-52 (315)
230 COG1189 Predicted rRNA methyla 96.3 0.0058 1.3E-07 54.8 4.7 39 153-191 77-115 (245)
231 PRK10458 DNA cytosine methylas 96.3 0.0088 1.9E-07 58.1 6.3 43 156-199 88-130 (467)
232 KOG3010 Methyltransferase [Gen 96.1 0.0089 1.9E-07 53.9 4.9 40 157-198 35-74 (261)
233 PF09243 Rsm22: Mitochondrial 96.1 0.025 5.3E-07 51.0 7.6 60 136-199 17-78 (274)
234 PF01728 FtsJ: FtsJ-like methy 95.7 0.0088 1.9E-07 49.6 3.2 35 155-189 23-59 (181)
235 PF01795 Methyltransf_5: MraW 95.6 0.032 6.9E-07 51.7 6.6 80 134-223 6-86 (310)
236 KOG1975 mRNA cap methyltransfe 95.3 0.039 8.4E-07 51.9 6.0 62 155-217 117-183 (389)
237 PF13578 Methyltransf_24: Meth 95.3 0.018 3.8E-07 43.5 3.1 62 160-223 1-66 (106)
238 TIGR03439 methyl_EasF probable 95.2 0.14 3.1E-06 47.4 9.6 66 155-221 76-147 (319)
239 KOG4300 Predicted methyltransf 95.1 0.08 1.7E-06 47.2 7.1 79 133-217 57-137 (252)
240 COG0500 SmtA SAM-dependent met 94.9 0.15 3.2E-06 36.2 6.9 56 159-217 52-109 (257)
241 COG4262 Predicted spermidine s 94.9 0.12 2.6E-06 49.6 7.9 68 155-223 289-363 (508)
242 KOG1253 tRNA methyltransferase 94.6 0.015 3.3E-07 56.8 1.3 65 155-220 109-175 (525)
243 COG0286 HsdM Type I restrictio 94.5 0.11 2.4E-06 50.6 7.1 80 128-215 166-250 (489)
244 PF07091 FmrO: Ribosomal RNA m 94.4 0.088 1.9E-06 47.5 5.7 59 155-216 105-164 (251)
245 COG0863 DNA modification methy 94.3 0.21 4.6E-06 43.9 8.0 47 154-202 221-267 (302)
246 COG0275 Predicted S-adenosylme 94.3 0.42 9.1E-06 44.4 10.0 80 134-223 9-90 (314)
247 KOG1122 tRNA and rRNA cytosine 94.0 0.089 1.9E-06 50.8 5.1 103 113-218 195-304 (460)
248 KOG2671 Putative RNA methylase 93.1 0.062 1.4E-06 50.9 2.4 60 154-215 207-274 (421)
249 KOG2361 Predicted methyltransf 92.3 0.1 2.2E-06 47.2 2.6 45 158-203 74-121 (264)
250 PF02086 MethyltransfD12: D12 92.3 0.2 4.3E-06 43.4 4.3 40 155-196 20-59 (260)
251 PF05219 DREV: DREV methyltran 92.2 0.29 6.4E-06 44.5 5.5 43 155-198 94-136 (265)
252 PF05050 Methyltransf_21: Meth 92.1 0.41 8.9E-06 37.8 5.7 51 161-212 1-58 (167)
253 PF01861 DUF43: Protein of unk 91.9 1.3 2.8E-05 39.9 9.2 65 153-221 42-107 (243)
254 PF05891 Methyltransf_PK: AdoM 91.9 0.26 5.6E-06 43.7 4.7 65 155-221 55-119 (218)
255 KOG2920 Predicted methyltransf 91.9 0.13 2.8E-06 47.2 2.8 38 154-191 115-152 (282)
256 COG1743 Adenine-specific DNA m 91.8 0.19 4.1E-06 51.8 4.1 45 154-200 89-133 (875)
257 PF06080 DUF938: Protein of un 91.6 0.53 1.2E-05 41.3 6.3 79 132-215 6-85 (204)
258 PRK00536 speE spermidine synth 91.3 1.8 3.8E-05 39.2 9.5 86 105-198 27-113 (262)
259 PF06962 rRNA_methylase: Putat 90.8 0.53 1.2E-05 39.0 5.1 35 180-215 1-35 (140)
260 KOG3115 Methyltransferase-like 90.7 0.38 8.3E-06 42.8 4.4 65 157-222 62-133 (249)
261 PF04445 SAM_MT: Putative SAM- 90.7 0.36 7.8E-06 43.1 4.3 62 157-220 77-146 (234)
262 COG0293 FtsJ 23S rRNA methylas 90.1 0.34 7.4E-06 42.5 3.7 50 154-216 44-95 (205)
263 KOG0822 Protein kinase inhibit 90.1 0.77 1.7E-05 45.8 6.4 62 156-219 368-434 (649)
264 KOG2793 Putative N2,N2-dimethy 89.7 0.49 1.1E-05 42.7 4.4 47 156-204 87-133 (248)
265 PF01269 Fibrillarin: Fibrilla 89.3 2.7 5.8E-05 37.6 8.7 78 131-216 53-132 (229)
266 PF03059 NAS: Nicotianamine sy 89.1 0.84 1.8E-05 41.7 5.5 68 156-224 121-192 (276)
267 COG1889 NOP1 Fibrillarin-like 89.0 1.5 3.2E-05 39.0 6.8 93 116-216 38-134 (231)
268 PF07279 DUF1442: Protein of u 88.6 4.5 9.7E-05 36.0 9.5 68 155-223 41-114 (218)
269 PF01739 CheR: CheR methyltran 88.4 1.9 4.1E-05 37.2 7.0 42 155-197 31-82 (196)
270 PF04989 CmcI: Cephalosporin h 86.6 1.9 4.1E-05 37.9 5.9 59 155-216 32-95 (206)
271 KOG2912 Predicted DNA methylas 85.5 1.5 3.2E-05 41.6 5.0 54 159-215 106-162 (419)
272 COG1565 Uncharacterized conser 85.0 4.7 0.0001 38.4 8.1 65 134-203 60-133 (370)
273 COG1568 Predicted methyltransf 84.7 2.6 5.7E-05 39.3 6.2 66 153-221 150-216 (354)
274 KOG2940 Predicted methyltransf 83.7 2.3 5E-05 38.8 5.3 42 155-197 72-113 (325)
275 KOG2651 rRNA adenine N-6-methy 83.5 4.1 8.9E-05 39.5 7.1 41 156-197 154-194 (476)
276 TIGR00497 hsdM type I restrict 83.1 4.1 9E-05 39.6 7.2 50 155-205 217-271 (501)
277 COG1352 CheR Methylase of chem 82.4 5.9 0.00013 36.0 7.5 59 134-197 79-147 (268)
278 PF03141 Methyltransf_29: Puta 82.0 3.2 6.9E-05 41.0 5.9 59 117-178 81-140 (506)
279 KOG3924 Putative protein methy 82.0 1.7 3.7E-05 41.8 4.0 62 154-216 191-261 (419)
280 KOG0024 Sorbitol dehydrogenase 81.8 3 6.5E-05 39.4 5.4 47 154-205 168-216 (354)
281 KOG1201 Hydroxysteroid 17-beta 81.7 3.6 7.8E-05 38.2 5.9 61 152-217 34-97 (300)
282 PRK10611 chemotaxis methyltran 81.6 3.1 6.8E-05 38.1 5.4 42 156-198 116-166 (287)
283 PF02636 Methyltransf_28: Puta 79.6 4.3 9.4E-05 35.6 5.5 62 136-201 2-72 (252)
284 COG3129 Predicted SAM-dependen 79.6 10 0.00022 34.7 7.8 95 115-212 36-136 (292)
285 KOG1709 Guanidinoacetate methy 78.4 7.8 0.00017 35.0 6.7 65 155-222 101-165 (271)
286 PF07757 AdoMet_MTase: Predict 77.9 2 4.2E-05 34.5 2.5 35 155-190 58-92 (112)
287 COG2241 CobL Precorrin-6B meth 77.5 1.7 3.7E-05 38.3 2.3 46 55-103 152-199 (210)
288 PF07942 N2227: N2227-like pro 77.4 17 0.00036 33.2 8.7 45 155-203 56-100 (270)
289 cd08283 FDH_like_1 Glutathione 75.3 6.2 0.00013 36.4 5.5 44 154-198 183-228 (386)
290 COG1063 Tdh Threonine dehydrog 75.3 6.7 0.00015 36.2 5.7 42 155-197 168-211 (350)
291 PRK06914 short chain dehydroge 74.3 17 0.00037 31.3 7.8 58 157-217 4-65 (280)
292 COG1062 AdhC Zn-dependent alco 74.2 4.9 0.00011 38.2 4.5 45 154-205 184-232 (366)
293 PTZ00357 methyltransferase; Pr 73.9 5.3 0.00011 41.6 4.9 60 158-218 703-775 (1072)
294 PRK07326 short chain dehydroge 73.1 19 0.00042 29.9 7.5 57 155-217 5-65 (237)
295 PRK07666 fabG 3-ketoacyl-(acyl 72.6 24 0.00052 29.5 8.1 59 154-217 5-67 (239)
296 KOG4589 Cell division protein 72.6 6.3 0.00014 34.9 4.5 35 154-188 68-104 (232)
297 PRK06949 short chain dehydroge 72.4 22 0.00048 30.0 7.9 59 154-217 7-69 (258)
298 COG3392 Adenine-specific DNA m 72.3 2.5 5.5E-05 39.0 2.1 44 154-200 26-69 (330)
299 PF05148 Methyltransf_8: Hypot 72.3 6.7 0.00014 34.9 4.6 43 138-188 61-103 (219)
300 PRK07063 short chain dehydroge 72.2 23 0.0005 30.1 8.0 61 154-217 5-69 (260)
301 PRK07102 short chain dehydroge 71.8 21 0.00046 30.0 7.6 56 158-217 3-62 (243)
302 PRK06172 short chain dehydroge 71.7 23 0.00049 30.0 7.7 59 154-217 5-67 (253)
303 PRK07523 gluconate 5-dehydroge 71.1 23 0.00051 30.0 7.7 59 154-217 8-70 (255)
304 PF02254 TrkA_N: TrkA-N domain 70.9 11 0.00023 28.4 5.0 46 163-217 3-51 (116)
305 PF01234 NNMT_PNMT_TEMT: NNMT/ 70.7 8.2 0.00018 34.9 5.0 45 154-199 55-99 (256)
306 KOG0022 Alcohol dehydrogenase, 70.6 6.1 0.00013 37.4 4.2 44 155-205 192-239 (375)
307 KOG3987 Uncharacterized conser 70.4 0.95 2.1E-05 40.6 -1.1 37 154-191 111-147 (288)
308 PRK08213 gluconate 5-dehydroge 69.3 27 0.00058 29.7 7.7 59 154-217 10-72 (259)
309 PRK06124 gluconate 5-dehydroge 69.0 30 0.00065 29.3 7.9 59 154-217 9-71 (256)
310 PRK08703 short chain dehydroge 68.9 35 0.00076 28.6 8.3 59 154-216 4-66 (239)
311 KOG2352 Predicted spermine/spe 68.4 3.3 7.2E-05 40.7 2.1 69 155-225 295-364 (482)
312 PRK06194 hypothetical protein; 68.3 29 0.00063 30.0 7.8 59 154-217 4-66 (287)
313 KOG0821 Predicted ribosomal RN 67.8 10 0.00022 34.6 4.8 62 153-217 48-109 (326)
314 PRK09242 tropinone reductase; 67.8 34 0.00074 29.0 8.0 61 154-217 7-71 (257)
315 PRK07062 short chain dehydroge 67.7 33 0.00071 29.3 8.0 61 154-217 6-70 (265)
316 PRK07904 short chain dehydroge 67.2 25 0.00055 30.3 7.2 60 155-217 7-71 (253)
317 PF11899 DUF3419: Protein of u 66.4 15 0.00033 35.0 6.0 37 154-191 34-70 (380)
318 PRK07231 fabG 3-ketoacyl-(acyl 66.4 29 0.00064 28.9 7.3 58 154-217 3-64 (251)
319 PRK08945 putative oxoacyl-(acy 66.0 34 0.00074 28.8 7.7 58 154-215 10-71 (247)
320 PRK07814 short chain dehydroge 66.0 36 0.00077 29.2 7.9 59 154-217 8-70 (263)
321 PRK08251 short chain dehydroge 65.7 37 0.00079 28.5 7.8 58 157-217 3-64 (248)
322 PF04672 Methyltransf_19: S-ad 65.7 9.4 0.0002 34.9 4.3 60 157-218 70-133 (267)
323 PRK05867 short chain dehydroge 65.6 32 0.0007 29.1 7.5 59 154-217 7-69 (253)
324 PRK08339 short chain dehydroge 65.5 39 0.00085 29.2 8.1 60 154-217 6-69 (263)
325 PRK12939 short chain dehydroge 65.3 40 0.00087 28.1 7.9 59 154-217 5-67 (250)
326 KOG3178 Hydroxyindole-O-methyl 64.4 7.4 0.00016 36.7 3.5 44 157-203 179-222 (342)
327 PRK05875 short chain dehydroge 64.0 43 0.00093 28.7 8.0 61 154-217 5-69 (276)
328 PRK08217 fabG 3-ketoacyl-(acyl 63.8 43 0.00094 27.9 7.8 58 154-216 3-64 (253)
329 PRK12826 3-ketoacyl-(acyl-carr 63.7 43 0.00093 27.9 7.8 59 154-217 4-66 (251)
330 PRK12429 3-hydroxybutyrate deh 63.0 40 0.00086 28.3 7.5 58 155-217 3-64 (258)
331 TIGR03206 benzo_BadH 2-hydroxy 62.7 44 0.00096 27.9 7.7 58 155-217 2-63 (250)
332 PRK08862 short chain dehydroge 62.5 39 0.00084 28.8 7.4 59 154-217 3-65 (227)
333 PRK07576 short chain dehydroge 62.4 47 0.001 28.6 8.0 59 154-217 7-69 (264)
334 PRK05876 short chain dehydroge 61.2 49 0.0011 28.9 8.0 59 154-217 4-66 (275)
335 COG1086 Predicted nucleoside-d 60.9 48 0.001 33.6 8.5 63 154-218 248-314 (588)
336 PF03721 UDPG_MGDP_dh_N: UDP-g 60.8 10 0.00023 32.1 3.5 30 165-196 7-40 (185)
337 PRK05786 fabG 3-ketoacyl-(acyl 60.6 47 0.001 27.6 7.5 58 154-217 3-64 (238)
338 PRK09424 pntA NAD(P) transhydr 60.6 20 0.00042 35.6 5.8 42 154-197 163-206 (509)
339 PLN02780 ketoreductase/ oxidor 60.5 39 0.00084 30.6 7.4 59 155-216 52-114 (320)
340 PRK06139 short chain dehydroge 60.2 49 0.0011 30.2 8.0 59 154-217 5-67 (330)
341 PRK07109 short chain dehydroge 60.0 54 0.0012 29.8 8.3 59 154-217 6-68 (334)
342 PRK05854 short chain dehydroge 59.9 54 0.0012 29.3 8.2 61 154-217 12-76 (313)
343 PRK06181 short chain dehydroge 59.7 49 0.0011 28.1 7.5 55 158-217 3-61 (263)
344 PRK06197 short chain dehydroge 59.3 57 0.0012 28.8 8.1 61 154-217 14-78 (306)
345 PRK06138 short chain dehydroge 58.7 54 0.0012 27.4 7.6 58 154-217 3-64 (252)
346 PRK07890 short chain dehydroge 58.4 59 0.0013 27.3 7.8 58 155-217 4-65 (258)
347 PRK09186 flagellin modificatio 58.1 55 0.0012 27.5 7.6 60 155-217 3-66 (256)
348 PF00106 adh_short: short chai 57.9 61 0.0013 25.3 7.3 51 163-216 6-62 (167)
349 PF02737 3HCDH_N: 3-hydroxyacy 57.9 27 0.00058 29.3 5.5 35 165-201 6-44 (180)
350 PRK06113 7-alpha-hydroxysteroi 57.7 59 0.0013 27.5 7.7 59 154-217 9-71 (255)
351 PRK12384 sorbitol-6-phosphate 57.5 63 0.0014 27.3 7.8 58 157-217 3-64 (259)
352 PRK07677 short chain dehydroge 57.4 57 0.0012 27.6 7.6 55 157-216 2-60 (252)
353 PRK07533 enoyl-(acyl carrier p 57.3 52 0.0011 28.3 7.3 59 154-217 8-71 (258)
354 KOG3201 Uncharacterized conser 57.3 10 0.00022 32.9 2.8 66 129-202 10-77 (201)
355 PRK06125 short chain dehydroge 56.1 69 0.0015 27.2 7.9 60 154-217 5-68 (259)
356 PRK07454 short chain dehydroge 55.9 65 0.0014 26.9 7.6 57 156-217 6-66 (241)
357 KOG1269 SAM-dependent methyltr 55.9 15 0.00031 34.9 3.9 61 154-215 109-169 (364)
358 PRK09880 L-idonate 5-dehydroge 55.9 40 0.00087 30.3 6.7 41 154-197 168-212 (343)
359 PLN02253 xanthoxin dehydrogena 55.8 66 0.0014 27.7 7.8 58 154-217 16-77 (280)
360 COG1064 AdhP Zn-dependent alco 55.7 30 0.00066 32.6 5.9 42 154-197 165-208 (339)
361 PLN02668 indole-3-acetate carb 55.5 8.1 0.00018 37.0 2.2 20 156-175 64-83 (386)
362 PRK13394 3-hydroxybutyrate deh 55.0 70 0.0015 26.9 7.7 59 154-217 5-67 (262)
363 PF00107 ADH_zinc_N: Zinc-bind 54.9 16 0.00035 27.7 3.4 31 165-197 1-32 (130)
364 PRK07478 short chain dehydroge 54.8 74 0.0016 26.9 7.8 59 154-217 4-66 (254)
365 PRK07774 short chain dehydroge 54.7 85 0.0018 26.2 8.1 59 154-217 4-66 (250)
366 PF04378 RsmJ: Ribosomal RNA s 54.3 20 0.00042 32.3 4.3 58 160-222 62-119 (245)
367 PRK07035 short chain dehydroge 54.0 76 0.0016 26.7 7.7 59 154-217 6-68 (252)
368 PRK07097 gluconate 5-dehydroge 53.9 74 0.0016 27.2 7.7 59 154-217 8-70 (265)
369 PRK06198 short chain dehydroge 53.7 76 0.0016 26.8 7.7 60 154-217 4-67 (260)
370 PRK08265 short chain dehydroge 53.6 68 0.0015 27.5 7.5 56 154-217 4-63 (261)
371 COG5379 BtaA S-adenosylmethion 52.5 55 0.0012 31.1 7.0 44 154-199 62-105 (414)
372 TIGR01963 PHB_DH 3-hydroxybuty 52.2 70 0.0015 26.7 7.2 55 158-217 3-61 (255)
373 KOG2360 Proliferation-associat 51.9 12 0.00026 36.1 2.7 62 154-217 212-275 (413)
374 PRK08303 short chain dehydroge 51.5 63 0.0014 29.0 7.2 59 154-217 6-78 (305)
375 PRK09291 short chain dehydroge 50.7 77 0.0017 26.6 7.3 56 157-217 3-62 (257)
376 KOG2198 tRNA cytosine-5-methyl 50.7 44 0.00096 32.0 6.2 60 154-215 154-218 (375)
377 PRK12829 short chain dehydroge 50.5 84 0.0018 26.4 7.5 57 154-217 9-69 (264)
378 PRK08643 acetoin reductase; Va 50.4 85 0.0018 26.5 7.5 56 157-217 3-62 (256)
379 PRK08277 D-mannonate oxidoredu 49.9 94 0.002 26.7 7.8 59 154-217 8-70 (278)
380 PRK05866 short chain dehydroge 49.9 94 0.002 27.5 8.0 59 154-217 38-100 (293)
381 PRK05717 oxidoreductase; Valid 49.4 83 0.0018 26.7 7.3 56 154-217 8-67 (255)
382 PRK08267 short chain dehydroge 49.2 42 0.00091 28.5 5.4 53 158-217 3-59 (260)
383 PRK08085 gluconate 5-dehydroge 49.2 96 0.0021 26.2 7.6 59 154-217 7-69 (254)
384 PLN03209 translocon at the inn 48.5 97 0.0021 31.4 8.5 61 155-218 79-150 (576)
385 PRK06940 short chain dehydroge 47.9 55 0.0012 28.5 6.1 54 158-217 4-60 (275)
386 PRK09072 short chain dehydroge 47.3 1.1E+02 0.0025 25.9 7.8 57 155-217 4-64 (263)
387 PRK07067 sorbitol dehydrogenas 47.3 93 0.002 26.3 7.3 56 154-217 4-63 (257)
388 PRK06720 hypothetical protein; 47.0 1.2E+02 0.0026 25.1 7.7 58 154-216 14-75 (169)
389 PF02719 Polysacc_synt_2: Poly 46.9 54 0.0012 30.3 6.0 53 165-218 6-66 (293)
390 PRK05650 short chain dehydroge 46.6 99 0.0021 26.5 7.4 55 158-217 2-60 (270)
391 PLN02662 cinnamyl-alcohol dehy 46.4 55 0.0012 28.7 5.9 60 155-217 3-66 (322)
392 PLN02989 cinnamyl-alcohol dehy 46.3 64 0.0014 28.5 6.3 61 155-218 4-68 (325)
393 PRK08264 short chain dehydroge 45.8 78 0.0017 26.3 6.5 53 154-217 4-60 (238)
394 TIGR00571 dam DNA adenine meth 45.7 37 0.00079 30.3 4.7 32 157-191 27-58 (266)
395 PRK08594 enoyl-(acyl carrier p 45.4 76 0.0016 27.3 6.5 58 154-217 5-70 (257)
396 PRK05565 fabG 3-ketoacyl-(acyl 45.2 1.3E+02 0.0028 24.9 7.7 58 155-217 4-66 (247)
397 PRK06196 oxidoreductase; Provi 45.1 88 0.0019 27.8 7.0 55 154-217 24-82 (315)
398 PRK06200 2,3-dihydroxy-2,3-dih 44.3 1.1E+02 0.0023 26.1 7.2 56 154-217 4-63 (263)
399 PRK08589 short chain dehydroge 43.8 1.4E+02 0.0029 25.8 7.9 58 154-217 4-65 (272)
400 PRK05653 fabG 3-ketoacyl-(acyl 43.4 1.2E+02 0.0027 24.8 7.3 58 155-217 4-65 (246)
401 TIGR02415 23BDH acetoin reduct 42.8 1.2E+02 0.0027 25.3 7.3 54 159-217 3-60 (254)
402 COG4301 Uncharacterized conser 42.6 2.5E+02 0.0054 26.2 9.4 70 155-225 78-152 (321)
403 PRK07831 short chain dehydroge 42.2 1.5E+02 0.0032 25.2 7.8 60 155-217 16-80 (262)
404 cd08237 ribitol-5-phosphate_DH 41.8 69 0.0015 28.9 5.9 41 154-197 162-207 (341)
405 PRK05855 short chain dehydroge 41.7 1.3E+02 0.0028 28.4 8.0 60 154-218 313-376 (582)
406 PRK12935 acetoacetyl-CoA reduc 41.1 1.5E+02 0.0032 24.7 7.5 59 154-217 4-67 (247)
407 PRK12825 fabG 3-ketoacyl-(acyl 41.1 1.7E+02 0.0036 24.0 7.7 57 155-216 5-66 (249)
408 PRK07201 short chain dehydroge 40.9 1.3E+02 0.0028 29.5 8.0 59 154-217 369-431 (657)
409 PRK08340 glucose-1-dehydrogena 40.8 76 0.0016 27.0 5.7 54 158-217 2-59 (259)
410 PRK07889 enoyl-(acyl carrier p 40.8 71 0.0015 27.4 5.6 57 154-217 5-68 (256)
411 PRK07024 short chain dehydroge 40.6 91 0.002 26.5 6.2 54 158-217 4-61 (257)
412 PRK06114 short chain dehydroge 40.3 1.5E+02 0.0033 25.1 7.5 59 154-217 6-69 (254)
413 PLN02740 Alcohol dehydrogenase 40.3 83 0.0018 28.9 6.3 41 154-197 197-241 (381)
414 cd05188 MDR Medium chain reduc 40.2 1.5E+02 0.0032 24.6 7.3 42 154-197 133-176 (271)
415 PRK05872 short chain dehydroge 40.1 1.3E+02 0.0029 26.4 7.4 58 154-217 7-68 (296)
416 PRK07985 oxidoreductase; Provi 38.7 75 0.0016 28.1 5.5 59 154-217 47-111 (294)
417 PRK11730 fadB multifunctional 38.7 74 0.0016 32.6 6.1 42 157-200 314-357 (715)
418 PRK07806 short chain dehydroge 38.7 1.8E+02 0.0038 24.3 7.6 59 154-217 4-67 (248)
419 PRK08226 short chain dehydroge 38.7 1.8E+02 0.0039 24.6 7.7 58 154-217 4-65 (263)
420 TIGR03366 HpnZ_proposed putati 38.3 98 0.0021 26.9 6.2 41 154-197 119-163 (280)
421 KOG1098 Putative SAM-dependent 38.2 42 0.00091 34.6 4.1 34 155-188 44-79 (780)
422 TIGR01500 sepiapter_red sepiap 37.9 98 0.0021 26.3 6.0 57 158-217 2-66 (256)
423 KOG3045 Predicted RNA methylas 37.7 47 0.001 30.9 4.1 28 155-186 180-207 (325)
424 PRK07791 short chain dehydroge 37.1 1.6E+02 0.0036 25.7 7.4 59 154-217 4-75 (286)
425 PRK08324 short chain dehydroge 36.7 1.4E+02 0.003 30.2 7.6 57 155-217 421-481 (681)
426 KOG0919 C-5 cytosine-specific 36.6 24 0.00052 32.6 2.0 42 156-198 3-46 (338)
427 PRK08293 3-hydroxybutyryl-CoA 36.6 82 0.0018 28.0 5.5 40 158-199 5-46 (287)
428 COG1004 Ugd Predicted UDP-gluc 36.6 46 0.001 32.3 4.0 30 165-196 7-40 (414)
429 PRK10669 putative cation:proto 36.3 46 0.00099 32.7 4.1 45 163-217 422-470 (558)
430 PRK07453 protochlorophyllide o 36.0 1.8E+02 0.004 25.7 7.7 58 155-217 5-66 (322)
431 COG1748 LYS9 Saccharopine dehy 35.7 83 0.0018 30.3 5.6 53 157-217 2-58 (389)
432 PRK06079 enoyl-(acyl carrier p 35.4 1.5E+02 0.0033 25.3 6.8 57 154-217 5-66 (252)
433 PF05575 V_cholerae_RfbT: Vibr 35.3 41 0.00088 29.6 3.1 49 154-203 78-127 (286)
434 PRK06505 enoyl-(acyl carrier p 35.3 1.7E+02 0.0037 25.4 7.2 59 154-217 5-68 (271)
435 PRK11154 fadJ multifunctional 35.1 98 0.0021 31.7 6.3 42 157-200 310-354 (708)
436 TIGR03451 mycoS_dep_FDH mycoth 34.7 1.1E+02 0.0025 27.5 6.2 40 154-196 175-218 (358)
437 PRK09496 trkA potassium transp 34.6 69 0.0015 29.9 4.9 53 155-216 230-285 (453)
438 PRK10538 malonic semialdehyde 34.5 1.1E+02 0.0024 25.9 5.7 47 164-217 7-57 (248)
439 COG2933 Predicted SAM-dependen 34.4 93 0.002 29.2 5.4 37 154-191 210-246 (358)
440 TIGR01832 kduD 2-deoxy-D-gluco 34.2 2.2E+02 0.0047 23.8 7.4 57 154-217 3-63 (248)
441 PRK07825 short chain dehydroge 34.1 1.7E+02 0.0038 24.9 7.0 54 155-217 4-61 (273)
442 PRK07775 short chain dehydroge 34.0 2.2E+02 0.0049 24.5 7.7 58 155-217 9-70 (274)
443 PF06690 DUF1188: Protein of u 33.9 76 0.0017 28.9 4.7 54 138-200 31-85 (252)
444 PRK07792 fabG 3-ketoacyl-(acyl 33.6 2.1E+02 0.0045 25.4 7.6 59 154-217 10-73 (306)
445 PRK12744 short chain dehydroge 33.6 2.5E+02 0.0054 23.7 7.8 59 154-217 6-72 (257)
446 PLN02650 dihydroflavonol-4-red 33.2 1.5E+02 0.0032 26.6 6.6 60 155-217 4-67 (351)
447 TIGR02632 RhaD_aldol-ADH rhamn 33.1 2.2E+02 0.0048 28.9 8.4 61 154-217 412-476 (676)
448 TIGR02818 adh_III_F_hyde S-(hy 33.0 1.3E+02 0.0028 27.4 6.3 41 154-197 184-228 (368)
449 KOG0725 Reductases with broad 32.5 3.7E+02 0.0079 24.0 9.6 61 154-216 6-70 (270)
450 PRK05993 short chain dehydroge 32.2 1.5E+02 0.0033 25.6 6.3 51 156-217 4-58 (277)
451 PLN02986 cinnamyl-alcohol dehy 32.1 1.4E+02 0.0031 26.3 6.2 60 155-217 4-67 (322)
452 PRK09260 3-hydroxybutyryl-CoA 32.0 1E+02 0.0022 27.4 5.2 32 165-198 8-43 (288)
453 PRK07819 3-hydroxybutyryl-CoA 31.8 1.3E+02 0.0029 27.0 6.0 40 158-199 7-48 (286)
454 cd08254 hydroxyacyl_CoA_DH 6-h 31.6 1.1E+02 0.0025 26.5 5.5 40 155-196 165-206 (338)
455 PRK06057 short chain dehydroge 31.6 1.3E+02 0.0028 25.4 5.7 36 154-191 5-44 (255)
456 COG1179 Dinucleotide-utilizing 31.3 31 0.00067 31.5 1.8 35 157-191 31-67 (263)
457 PRK12743 oxidoreductase; Provi 31.0 2.2E+02 0.0048 24.1 7.1 56 157-217 3-63 (256)
458 cd08232 idonate-5-DH L-idonate 30.9 1.1E+02 0.0024 27.0 5.3 41 155-196 165-207 (339)
459 PRK07832 short chain dehydroge 30.9 1.4E+02 0.0031 25.6 5.9 50 165-217 8-61 (272)
460 cd08281 liver_ADH_like1 Zinc-d 30.6 1.4E+02 0.003 27.2 6.0 40 155-197 191-234 (371)
461 PRK06101 short chain dehydroge 30.5 1.2E+02 0.0025 25.6 5.2 51 158-217 3-57 (240)
462 PRK12481 2-deoxy-D-gluconate 3 30.3 2.3E+02 0.0049 24.1 7.1 57 154-217 6-66 (251)
463 PRK07041 short chain dehydroge 30.3 1.5E+02 0.0033 24.3 5.8 48 165-217 5-56 (230)
464 PRK07069 short chain dehydroge 30.2 1.6E+02 0.0034 24.5 5.9 50 165-216 7-61 (251)
465 cd05278 FDH_like Formaldehyde 30.1 1.3E+02 0.0027 26.6 5.5 42 155-197 167-210 (347)
466 COG4017 Uncharacterized protei 30.0 55 0.0012 29.3 3.1 45 154-200 43-88 (254)
467 PRK06182 short chain dehydroge 29.8 1.7E+02 0.0037 25.0 6.2 51 156-217 3-57 (273)
468 PRK12745 3-ketoacyl-(acyl-carr 29.8 2.6E+02 0.0057 23.3 7.3 56 157-217 3-63 (256)
469 TIGR03589 PseB UDP-N-acetylglu 29.4 1.6E+02 0.0034 26.4 6.2 58 155-218 3-65 (324)
470 PLN02583 cinnamoyl-CoA reducta 29.0 2.4E+02 0.0051 24.9 7.1 59 155-217 5-68 (297)
471 cd08239 THR_DH_like L-threonin 28.9 1.9E+02 0.0042 25.5 6.6 40 154-196 162-205 (339)
472 PRK12828 short chain dehydroge 28.8 2.6E+02 0.0056 22.8 6.9 57 154-217 5-65 (239)
473 COG0677 WecC UDP-N-acetyl-D-ma 28.7 50 0.0011 32.2 2.9 29 165-195 16-48 (436)
474 PRK08415 enoyl-(acyl carrier p 28.6 2.6E+02 0.0056 24.4 7.2 58 155-217 4-66 (274)
475 PRK03562 glutathione-regulated 28.2 74 0.0016 32.0 4.1 44 164-217 406-453 (621)
476 PRK03659 glutathione-regulated 27.8 76 0.0016 31.8 4.1 44 164-217 406-453 (601)
477 TIGR01289 LPOR light-dependent 27.8 2.3E+02 0.005 25.2 6.9 58 156-217 3-64 (314)
478 PRK12823 benD 1,6-dihydroxycyc 27.8 3.2E+02 0.0069 23.0 7.5 58 154-217 6-67 (260)
479 PRK07530 3-hydroxybutyryl-CoA 27.8 1.4E+02 0.003 26.5 5.4 37 158-198 6-46 (292)
480 PRK06701 short chain dehydroge 27.8 2.9E+02 0.0062 24.3 7.4 59 154-217 44-107 (290)
481 KOG1596 Fibrillarin and relate 27.8 72 0.0016 29.5 3.5 57 131-191 136-194 (317)
482 PRK08690 enoyl-(acyl carrier p 27.6 2.5E+02 0.0055 24.1 6.9 59 154-217 4-67 (261)
483 PRK06035 3-hydroxyacyl-CoA deh 27.6 1.7E+02 0.0036 26.0 5.9 37 158-198 5-45 (291)
484 PF13603 tRNA-synt_1_2: Leucyl 27.6 64 0.0014 27.8 3.1 48 28-75 85-141 (185)
485 PRK12475 thiamine/molybdopteri 27.5 1.9E+02 0.0042 26.9 6.4 61 154-215 22-105 (338)
486 cd08301 alcohol_DH_plants Plan 27.4 2E+02 0.0044 25.9 6.5 40 154-196 186-229 (369)
487 PRK12746 short chain dehydroge 27.3 3.7E+02 0.0079 22.4 8.5 59 154-217 4-67 (254)
488 PRK05599 hypothetical protein; 27.3 2E+02 0.0043 24.5 6.1 56 158-217 2-60 (246)
489 PRK15116 sulfur acceptor prote 27.2 76 0.0016 28.8 3.6 34 155-188 29-64 (268)
490 PRK08017 oxidoreductase; Provi 27.1 1.9E+02 0.0042 24.1 6.0 48 158-216 4-55 (256)
491 PRK15057 UDP-glucose 6-dehydro 27.0 85 0.0019 29.7 4.1 31 165-197 7-40 (388)
492 PRK12748 3-ketoacyl-(acyl-carr 27.0 3E+02 0.0066 23.2 7.2 59 154-217 3-78 (256)
493 KOG1208 Dehydrogenases with di 26.9 3.9E+02 0.0086 24.6 8.4 61 154-217 33-97 (314)
494 PF03492 Methyltransf_7: SAM d 26.9 55 0.0012 30.4 2.7 21 155-175 16-36 (334)
495 PLN02827 Alcohol dehydrogenase 26.8 1.8E+02 0.0039 26.8 6.1 40 154-196 192-235 (378)
496 PRK06935 2-deoxy-D-gluconate 3 26.8 3E+02 0.0066 23.2 7.2 58 154-217 13-74 (258)
497 PRK06129 3-hydroxyacyl-CoA deh 26.8 1.4E+02 0.003 26.9 5.3 31 165-197 9-43 (308)
498 cd01487 E1_ThiF_like E1_ThiF_l 26.8 2.5E+02 0.0055 23.2 6.5 30 159-188 2-33 (174)
499 PRK05579 bifunctional phosphop 26.8 4.4E+02 0.0096 25.2 8.9 58 125-188 162-238 (399)
500 TIGR02441 fa_ox_alpha_mit fatt 26.7 1.4E+02 0.003 30.9 5.8 42 157-200 336-379 (737)
No 1
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.92 E-value=4.3e-25 Score=187.49 Aligned_cols=108 Identities=37% Similarity=0.620 Sum_probs=90.6
Q ss_pred EEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH
Q 027179 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (227)
Q Consensus 109 L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~ 188 (227)
||||+|+|+|++|.+|++..+|||++.|+|++|+||+.. . .++.+|||||||||++|+||++|||.+|++||.|+
T Consensus 1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~ 75 (183)
T PF03602_consen 1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR 75 (183)
T ss_dssp EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence 799999999999999999999999999999999999864 1 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 189 ~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
.++ +.+++|++..++.++++++++|++.++.+.
T Consensus 76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence 999 999999999999888999999999999876
No 2
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.2e-24 Score=183.43 Aligned_cols=109 Identities=34% Similarity=0.571 Sum_probs=102.7
Q ss_pred eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHh-cCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeC
Q 027179 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (227)
Q Consensus 108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~-~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEi 186 (227)
+|+||+|+|+|++|.+|++..+|||++.|+|++|+|+.. + .++.+|||||||||++|+||++|||.+|++||.
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~------i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~ 74 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDE------IEGARVLDLFAGSGALGLEALSRGAARVVFVEK 74 (187)
T ss_pred CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhccccc------cCCCEEEEecCCccHhHHHHHhCCCceEEEEec
Confidence 589999999999999999999999999999999999986 3 689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 187 s~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~ 223 (227)
|..|+ ..+++|++..++..+.+++..|+..+|+.+.
T Consensus 75 ~~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 75 DRKAV-KILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred CHHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 99999 9999999999988889999999998877653
No 3
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.91 E-value=2e-23 Score=177.64 Aligned_cols=112 Identities=25% Similarity=0.331 Sum_probs=104.0
Q ss_pred cccceEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEE
Q 027179 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF 183 (227)
Q Consensus 104 ~~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~a 183 (227)
+.+++++|++|+++|++|..|++...|||++.+++++|+++... .++.+|||||||||++|++++++|+.+|++
T Consensus 4 ~~~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~ 77 (189)
T TIGR00095 4 SGSKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFL 77 (189)
T ss_pred CCCceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEE
Confidence 44789999999999999999999999999999999999999753 578899999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 184 VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 184 VEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
||.++.++ +.+++|++.+++.++++++++|+++++..+
T Consensus 78 vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 78 EEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFL 115 (189)
T ss_pred EeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence 99999999 999999999999778999999999988654
No 4
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.86 E-value=3.7e-21 Score=165.57 Aligned_cols=106 Identities=29% Similarity=0.480 Sum_probs=97.4
Q ss_pred eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCC
Q 027179 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (227)
Q Consensus 108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis 187 (227)
.|+|++|+|+|++|.+|++..+||+++.+++++|+++... .++.+|||||||||.++++++++++.+|++||++
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~ 85 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD 85 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC
Confidence 5999999999999999999999999999999999998642 3567999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 188 ~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
++++ +.+++|++.+++. +++++++|+++++..
T Consensus 86 ~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 86 RAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQ 117 (199)
T ss_pred HHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhh
Confidence 9999 9999999999985 699999999998754
No 5
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.68 E-value=6.6e-17 Score=155.99 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=116.4
Q ss_pred eccCCCCC--ChHHHH-HHHHHcCCCCccccCCCCCcccccccCCCCcccccc-ccccccccccceEEEEecc--cCCee
Q 027179 47 SYKSGTGL--TSEDKK-ELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSD-EKSQEERTTHRLLQVLGGK--ARRKK 120 (227)
Q Consensus 47 ~~~~~~~~--~~~~~~-~~~~~~G~~~~~~~~~~l~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~L~ii~G~--~~Gr~ 120 (227)
..+.++|+ |..|.. .+.+..|++...+... .++- -+.++... .+...+|..+.+||||.|+ |+|++
T Consensus 14 ~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~----~~~~----l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~ 85 (506)
T PRK01544 14 DKLNKIGISSPQLEARILLQHVINKPIEYLLIN----LDEQ----LNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSRE 85 (506)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhc----cCCC----CCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcE
Confidence 34667887 445555 4444446665333221 0000 11112222 3356778889999999995 89999
Q ss_pred ecCCCCC-CCCCCHHHHHHHHHHHHHhcCC---------------CC--CCCCCCeEEEeccCCCHHHHHHHHc-CCCEE
Q 027179 121 LLSPKGM-DVRPMMEVVKGAAFDILQSAGG---------------CP--ASLRPGRWLDLYSGTGSVGIEAISR-GCSEV 181 (227)
Q Consensus 121 L~v~~g~-~~RPtte~v~ealf~~L~~~~~---------------~~--~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V 181 (227)
|.+.++. +|||+||.+++.+++.+....+ .. ...++.+|||+|||||.+++.+++. +..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 9997775 8999999999998876541000 00 0113468999999999999998864 45689
Q ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 182 ~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
+++|+|+.|+ +.+++|++.+++.++++++++|+++.+
T Consensus 166 ~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~ 202 (506)
T PRK01544 166 IATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI 202 (506)
T ss_pred EEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC
Confidence 9999999999 999999999999888999999987754
No 6
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2e-16 Score=142.45 Aligned_cols=112 Identities=24% Similarity=0.277 Sum_probs=93.5
Q ss_pred cccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179 100 QEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176 (227)
Q Consensus 100 ~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~ 176 (227)
..+|..+.+++||.|. |+|.+|.+.++. +|||.|+.+.+.+...+.. ... +|||+|||||++++.+++.
T Consensus 60 ~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~-------~~~-~ilDlGTGSG~iai~la~~ 131 (280)
T COG2890 60 LERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ-------LDK-RILDLGTGSGAIAIALAKE 131 (280)
T ss_pred HHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhh-------cCC-cEEEecCChHHHHHHHHhh
Confidence 4455668899999995 899999998875 8999999999887633322 112 7999999999999999887
Q ss_pred CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 177 GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 177 Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.. ..|+++|+|+.|+ ++|++|++.|++ .++.++++|+++.++.
T Consensus 132 ~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~~~ 175 (280)
T COG2890 132 GPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPLRG 175 (280)
T ss_pred CcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence 54 5899999999999 999999999999 5688888899887654
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.62 E-value=1.1e-15 Score=136.80 Aligned_cols=114 Identities=19% Similarity=0.084 Sum_probs=96.2
Q ss_pred ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179 99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175 (227)
Q Consensus 99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas 175 (227)
...+|....+++||.|. |+|++|.+.++. .|||+|+.+++.+++.+... ....+|||+|||||.+++.++.
T Consensus 61 ~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~ 134 (284)
T TIGR00536 61 LVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAY 134 (284)
T ss_pred HHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHH
Confidence 35566667899999995 889999998775 79999999999988766421 1236899999999999999987
Q ss_pred cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 176 RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 176 ~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus 135 ~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 135 EFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC
Confidence 54 35899999999999 999999999999777999999998755
No 8
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=3.1e-15 Score=135.00 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=91.3
Q ss_pred ccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-
Q 027179 101 EERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR- 176 (227)
Q Consensus 101 ~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~- 176 (227)
..|-.+-+||||.|+ |++.+|.+.+|. +|||+||+.++++.+.+.+... ..+..+||+|||||++++.+++.
T Consensus 95 ~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~----~~~~~ildlgtGSGaIslsll~~L 170 (328)
T KOG2904|consen 95 LQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEH----SKHTHILDLGTGSGAISLSLLHGL 170 (328)
T ss_pred HHHHhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhh----cccceEEEecCCccHHHHHHHhcC
Confidence 344557899999996 678888887775 8999999999999988876422 45568999999999999999874
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (227)
Q Consensus 177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~ 212 (227)
+...|+|||.++.|+ .++.+|++++++.+++.+++
T Consensus 171 ~~~~v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 171 PQCTVTAIDVSKAAI-KLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CCceEEEEeccHHHH-HHHHHHHHHHhhcCceEEEe
Confidence 566899999999999 99999999999999999884
No 9
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.59 E-value=2.8e-15 Score=132.57 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=92.0
Q ss_pred ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179 99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175 (227)
Q Consensus 99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas 175 (227)
+..+|..+.+||||.|. |+|++|.+.++. ++|+.|+.+.+.+..++... ..+.+|||+|||||.+++.++.
T Consensus 33 ~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 33 MVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred HHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHH
Confidence 35677778999999995 789999998875 69999999998887766431 2345899999999999999886
Q ss_pred c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 176 R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 176 ~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
. +..+|++||+|+.|+ +.+++|++.|+. +++++|+++++.
T Consensus 107 ~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~ 147 (251)
T TIGR03704 107 ALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALP 147 (251)
T ss_pred hCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcc
Confidence 4 345899999999999 999999998873 689999987664
No 10
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.59 E-value=4.1e-15 Score=133.70 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=93.7
Q ss_pred cccccc-ccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCeEEEeccCCCHHHHHH
Q 027179 99 SQEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173 (227)
Q Consensus 99 ~~~~~~-~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~-~L~~~~~~~~~~~~~~VLDLgsGTG~isI~a 173 (227)
...+|. .+.++|||.|+ |.|++|.+.++. ++||.++.+.+..+. ++.. ..+.+|||+|||||.+++.+
T Consensus 67 ~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~l 139 (284)
T TIGR03533 67 LIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIAC 139 (284)
T ss_pred HHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHH
Confidence 355665 57799999996 789999997764 799999988877654 3421 23568999999999999999
Q ss_pred HHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 174 ISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 174 as~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
+... ..+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus 140 a~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~ 185 (284)
T TIGR03533 140 AYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL 185 (284)
T ss_pred HHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 8753 35899999999999 999999999999878999999998755
No 11
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.58 E-value=8.1e-15 Score=138.90 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=92.8
Q ss_pred ccccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH
Q 027179 99 SQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175 (227)
Q Consensus 99 ~~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas 175 (227)
...+|..++++|||.|. |+|++|.+.++. +|||+|+.+++.+++.+. ++.+|||+|||||.+++.++.
T Consensus 201 ~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA~ 271 (423)
T PRK14966 201 LAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVAL 271 (423)
T ss_pred HHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHHH
Confidence 46678889999999995 899999997664 899999999988876543 345899999999999999886
Q ss_pred c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 176 R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 176 ~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
. ...+|+++|+|+.|+ +.+++|++.++. +++++++|+++.
T Consensus 272 ~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 272 ERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred hCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhcc
Confidence 4 456899999999999 999999999885 699999998764
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=1e-14 Score=132.67 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=93.6
Q ss_pred cccccc-ccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCeEEEeccCCCHHHHHH
Q 027179 99 SQEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173 (227)
Q Consensus 99 ~~~~~~-~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~-~L~~~~~~~~~~~~~~VLDLgsGTG~isI~a 173 (227)
...+|. .+.++|||.|+ |+|++|.+.++. +|||.++.+.+..+. ++.. ....+|||+|||+|.+++.+
T Consensus 79 ~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~l 151 (307)
T PRK11805 79 LIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIAC 151 (307)
T ss_pred HHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHH
Confidence 356665 57899999995 789999997664 799999988877664 3332 12368999999999999999
Q ss_pred HHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 174 ISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 174 as~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
+.. ...+|+++|+|+.++ +.+++|++.+++.++++++++|+++.+
T Consensus 152 a~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l 197 (307)
T PRK11805 152 AYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAAL 197 (307)
T ss_pred HHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhC
Confidence 875 346899999999999 999999999999878999999998765
No 13
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.46 E-value=1.6e-13 Score=124.85 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
|.+.+|||.+..+.+-... .++++|||+|||||.++|.|++.|+++|+++|+||.|+ +.+++|++.|++.
T Consensus 141 GTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 141 GTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVE 210 (295)
T ss_dssp -SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-T
T ss_pred cCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCC
Confidence 4679999999887764332 46789999999999999999999999999999999999 9999999999998
Q ss_pred CcEEE
Q 027179 206 DVSSI 210 (227)
Q Consensus 206 ~~v~~ 210 (227)
+++.+
T Consensus 211 ~~~~v 215 (295)
T PF06325_consen 211 DRIEV 215 (295)
T ss_dssp TCEEE
T ss_pred eeEEE
Confidence 87655
No 14
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.45 E-value=2.4e-13 Score=128.03 Aligned_cols=70 Identities=29% Similarity=0.313 Sum_probs=65.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHHhh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ 224 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~~~ 224 (227)
..+++||||||+||.+|+.||..||.+||.||+|..++ +++++|++.||++ +++.++++|++++|+++++
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~ 286 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAER 286 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHHh
Confidence 35889999999999999999999999999999999999 9999999999996 6789999999999999876
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=4.6e-13 Score=114.77 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~ 209 (227)
+|.+.++...++.|.. .++.++||+|||||+++++++..+ ..+|+++|.+++++ +.+++|++++|++ +++
T Consensus 17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~ 87 (187)
T COG2242 17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE 87 (187)
T ss_pred CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence 6889999888888876 478899999999999999998543 46899999999999 9999999999975 799
Q ss_pred EEEccHHHHHHHHh
Q 027179 210 IHTVRVETFLERAE 223 (227)
Q Consensus 210 ~i~gDa~~~L~~~~ 223 (227)
++.+|+.+.|.++.
T Consensus 88 vv~g~Ap~~L~~~~ 101 (187)
T COG2242 88 VVEGDAPEALPDLP 101 (187)
T ss_pred EEeccchHhhcCCC
Confidence 99999999998754
No 16
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.2e-13 Score=113.98 Aligned_cols=86 Identities=23% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~ 206 (227)
..+.+|...++..++..+...+ +.+++.|+|||||||.+++.++..|+.+|+|||+|++|+ +.+++|+..++ .
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g----~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g 93 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRG----DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--G 93 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcC----CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--C
Confidence 3455555555555544443433 478899999999999999999999999999999999999 99999999943 4
Q ss_pred cEEEEEccHHHHH
Q 027179 207 VSSIHTVRVETFL 219 (227)
Q Consensus 207 ~v~~i~gDa~~~L 219 (227)
+++++.+|+.++-
T Consensus 94 ~v~f~~~dv~~~~ 106 (198)
T COG2263 94 DVEFVVADVSDFR 106 (198)
T ss_pred ceEEEEcchhhcC
Confidence 6999999998753
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.43 E-value=5.6e-13 Score=110.77 Aligned_cols=93 Identities=22% Similarity=0.322 Sum_probs=78.9
Q ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHH
Q 027179 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 119 r~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~ 197 (227)
.+|...+|.+.++..+.-.+.+.+++... .+.+|||+|||+|.+|+.++..+.. +|+++|+|+.|+ +.+++
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~ 73 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKR 73 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHH
Confidence 35667788888888877777777777652 5679999999999999999987654 799999999999 99999
Q ss_pred HHHHhCCCCcEEEEEccHHHHHH
Q 027179 198 NLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 198 N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
|++.|++++ ++++++|+++.+.
T Consensus 74 n~~~n~~~~-v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 74 NAERNGLEN-VEVVQSDLFEALP 95 (170)
T ss_dssp HHHHTTCTT-EEEEESSTTTTCC
T ss_pred HHHhcCccc-ccccccccccccc
Confidence 999999986 9999999887554
No 18
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.41 E-value=1.5e-12 Score=118.21 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=60.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHHhh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ 224 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~~~ 224 (227)
.++++||||||+||+||+.|+..||.+|++||+|..|+ +++++|++.||++ ++++++++|++++++++.+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~ 192 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK 192 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhc
Confidence 46789999999999999999999999999999999999 9999999999986 6899999999999987643
No 19
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.6e-13 Score=120.08 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
|.+++|||.+..+++=+.+ .++++|||+|||||.++|++++.|+++|+++|+||.|+ +.+++|+++|++.
T Consensus 142 GTG~HpTT~lcL~~Le~~~---------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~ 211 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL---------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVE 211 (300)
T ss_pred CCCCChhHHHHHHHHHHhh---------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCc
Confidence 5789999998776653322 46889999999999999999999999999999999999 9999999999997
No 20
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=3.2e-12 Score=111.97 Aligned_cols=110 Identities=22% Similarity=0.184 Sum_probs=89.2
Q ss_pred cccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179 100 QEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176 (227)
Q Consensus 100 ~~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~ 176 (227)
..+|....+++++.|. |+++.|.+.++. .+||.++.+.+.++..+.. .++.+|||+|||+|.+++.++..
T Consensus 57 ~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 57 VARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred HHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHH
Confidence 4455556788988885 889999887664 7999999999888755432 35678999999999999999875
Q ss_pred C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 177 G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 177 G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
. ..+|+++|+++.++ +.+++|++ ++..++++++++|+++.
T Consensus 130 ~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 130 RPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQGDWFEP 170 (275)
T ss_pred CCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEEccccCc
Confidence 3 46899999999999 99999998 44445799999998654
No 21
>PLN02672 methionine S-methyltransferase
Probab=99.33 E-value=5e-12 Score=131.20 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=81.2
Q ss_pred ccCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHH
Q 027179 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (227)
Q Consensus 115 ~~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~ 192 (227)
.|+|++|.+.++. +|||.|+.+.+. ++..... ..++.+|||+|||||.+++.++... ..+|++||+|+.|+
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al- 155 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV- 155 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4899999997775 899999999887 4432110 1245689999999999999988753 46899999999999
Q ss_pred HHHHHHHHHhCCC---------------CcEEEEEccHHHHHH
Q 027179 193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLE 220 (227)
Q Consensus 193 ~~ar~N~~~ngl~---------------~~v~~i~gDa~~~L~ 220 (227)
+++++|++.|+++ ++++++++|+++.+.
T Consensus 156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 9999999998643 479999999998774
No 22
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.30 E-value=2.4e-11 Score=114.54 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA 222 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~ 222 (227)
.++++|||||||||.++++++..|+.+|++||+|+.++ +++++|++.|+++ ++++++++|+++++.++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence 35789999999999999998888888999999999999 9999999999996 47999999999998765
No 23
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.30 E-value=2.7e-11 Score=112.81 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=77.6
Q ss_pred cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (227)
Q Consensus 116 ~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a 195 (227)
+.|.++.+.++.+. .+...+.+.+++++....+ ...+.+|||||||+|.+++++++++ .+|++||+|+.|+ +.+
T Consensus 198 ~~g~~~~~~~~~F~-Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av-~~a 271 (374)
T TIGR02085 198 FNDVPLVIRPQSFF-QTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAI-ACA 271 (374)
T ss_pred ECCEEEEECCCccc-cCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHH-HHH
Confidence 34667777776553 4445577777776543210 1346799999999999999999876 5899999999999 999
Q ss_pred HHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 196 IPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 196 r~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
++|++.++++ +++++++|+.+++..
T Consensus 272 ~~N~~~~~~~-~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 272 QQSAQMLGLD-NLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHcCCC-cEEEEECCHHHHHHh
Confidence 9999999985 799999999988753
No 24
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.29 E-value=3.4e-11 Score=111.87 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=73.5
Q ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 119 r~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
..+.++++.+..+.++ +.+.+++++..... ..+.+|||||||+|.|++.++ +++.+|++||+++.|+ +.+++|
T Consensus 175 ~~~~~~~~sF~Q~N~~-~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai-~~a~~N 247 (362)
T PRK05031 175 FIYRQVENSFTQPNAA-VNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALA-RNFRRVLATEISKPSV-AAAQYN 247 (362)
T ss_pred EEEEeCCCCeeccCHH-HHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHH-HHHHHH
Confidence 4566666666655554 44566666544311 123579999999999999655 4567999999999999 999999
Q ss_pred HHHhCCCCcEEEEEccHHHHHHHH
Q 027179 199 LEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 199 ~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
++.|+++ +++++++|+.++++.+
T Consensus 248 ~~~~~~~-~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 248 IAANGID-NVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHhCCC-cEEEEECCHHHHHHHH
Confidence 9999996 6999999999998764
No 25
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.29 E-value=2.2e-11 Score=103.25 Aligned_cols=83 Identities=27% Similarity=0.234 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v 208 (227)
+|.+.++...+..+.. .++.+|||+|||||.++++++.. + ..+|++||+++.++ +.+++|++.+++.+++
T Consensus 23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence 5667777666665543 46789999999999999998764 3 46899999999999 9999999999976789
Q ss_pred EEEEccHHHHHHH
Q 027179 209 SIHTVRVETFLER 221 (227)
Q Consensus 209 ~~i~gDa~~~L~~ 221 (227)
+++++|+.+.+..
T Consensus 95 ~~~~~d~~~~l~~ 107 (198)
T PRK00377 95 VLIKGEAPEILFT 107 (198)
T ss_pred EEEEechhhhHhh
Confidence 9999999887654
No 26
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=110.09 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=77.8
Q ss_pred CeeecC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 027179 118 RKKLLS-PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVL 195 (227)
Q Consensus 118 Gr~L~v-~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~a 195 (227)
++.+.+ .+...+|+.+|.+.-+.| ... ....+|||||||+|.+++.++++ ...++++||+++++. +.|
T Consensus 15 ~~~~~I~q~~~~~~~~~DaiLL~~~--~~~-------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A 84 (248)
T COG4123 15 FKQFFIIQDRCGFRYGTDAILLAAF--APV-------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMA 84 (248)
T ss_pred ccceEEEeCCCccccccHHHHHHhh--ccc-------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHH
Confidence 344433 344589999997664433 322 23679999999999999999987 547899999999999 999
Q ss_pred HHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179 196 IPNLEWTGFLDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 196 r~N~~~ngl~~~v~~i~gDa~~~L~~~~ 223 (227)
++|++.|+++++++++++|+.++.+...
T Consensus 85 ~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 85 QRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHHhCcchhceeEehhhHHHhhhccc
Confidence 9999999999999999999998876543
No 27
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.27 E-value=2.6e-11 Score=114.98 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=78.1
Q ss_pred cCCeeecCCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Q 027179 116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (227)
Q Consensus 116 ~~Gr~L~v~~g~~~---RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~ 192 (227)
|.|..|.+.++.+. +..++.+.+.+++++.. .++.+|||+|||+|.+++.++..+ .+|++||+|+.++
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al- 332 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV- 332 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence 56788888777653 34456677777777653 356799999999999999988776 5899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 193 NVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 193 ~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
+.+++|++.+++. +++++++|+.+.+.
T Consensus 333 ~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 333 ERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 9999999999986 59999999988764
No 28
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.26 E-value=7.5e-11 Score=107.19 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Q 027179 117 RRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (227)
Q Consensus 117 ~Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~ 193 (227)
.|..+.+.++.+..... +.+.+.+.+++.. .++.+|||+|||+|.+++.++..+ .+|++||+++.++ +
T Consensus 139 ~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~-------~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av-~ 209 (315)
T PRK03522 139 NGVPLFIRPQSFFQTNPAVAAQLYATARDWVRE-------LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAI-A 209 (315)
T ss_pred CCEEEEECCCeeeecCHHHHHHHHHHHHHHHHh-------cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHH-H
Confidence 45566666654433333 2333334444432 356799999999999999999877 5899999999999 9
Q ss_pred HHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 194 VLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 194 ~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.+++|++.+++ ++++++++|+.+++.
T Consensus 210 ~A~~n~~~~~l-~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 210 CAKQSAAELGL-TNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHcCC-CceEEEEcCHHHHHH
Confidence 99999999999 479999999998764
No 29
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.9e-11 Score=114.33 Aligned_cols=95 Identities=23% Similarity=0.225 Sum_probs=77.1
Q ss_pred CeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179 118 RKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (227)
Q Consensus 118 Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ 194 (227)
+..+.+++..+.-+.. +.+.+.+.+|+.. ..++++||||||.|.||+.+|.+ ..+|++||++++|+ +.
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~ 330 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EA 330 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh-------cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HH
Confidence 5667776665555554 3455556666664 35689999999999999998855 56899999999999 99
Q ss_pred HHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 195 LIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 195 ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
|++|++.|+++| ++++.+|+++++...
T Consensus 331 A~~NA~~n~i~N-~~f~~~~ae~~~~~~ 357 (432)
T COG2265 331 AQENAAANGIDN-VEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHcCCCc-EEEEeCCHHHHhhhc
Confidence 999999999986 999999999998765
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=3.8e-11 Score=101.53 Aligned_cols=86 Identities=21% Similarity=0.122 Sum_probs=71.1
Q ss_pred CCCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 127 MDVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 127 ~~~RPtt--e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
...||++ +.+.+.+++.+.... ...+.+|||+|||+|.+++.++..+ ..+|++||.|+.++ +.+++|++.++
T Consensus 16 ~l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~ 90 (181)
T TIGR00138 16 NLTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELG 90 (181)
T ss_pred cccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhC
Confidence 3588888 778888888764321 1467899999999999999987643 46899999999999 99999999999
Q ss_pred CCCcEEEEEccHHHH
Q 027179 204 FLDVSSIHTVRVETF 218 (227)
Q Consensus 204 l~~~v~~i~gDa~~~ 218 (227)
+. +++++++|+.++
T Consensus 91 ~~-~i~~i~~d~~~~ 104 (181)
T TIGR00138 91 LN-NVEIVNGRAEDF 104 (181)
T ss_pred CC-CeEEEecchhhc
Confidence 86 599999999874
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.24 E-value=8.3e-11 Score=99.27 Aligned_cols=85 Identities=20% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (227)
Q Consensus 128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~ 206 (227)
..+++...+...+++++.. .++.+|||+|||+|.++++++.. ...+|++||+|+.++ +.+++|++.+++.
T Consensus 20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~- 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK- 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence 4568888888888887753 36689999999999999998754 346899999999999 9999999999985
Q ss_pred cEEEEEccHHHHHHH
Q 027179 207 VSSIHTVRVETFLER 221 (227)
Q Consensus 207 ~v~~i~gDa~~~L~~ 221 (227)
+++++++|+.+.+..
T Consensus 91 ~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 91 NVEVIEGSAPECLAQ 105 (196)
T ss_pred CeEEEECchHHHHhh
Confidence 699999999876543
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=3.8e-11 Score=91.04 Aligned_cols=60 Identities=23% Similarity=0.225 Sum_probs=54.3
Q ss_pred CCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
++.+|||||||+|.+++++++ ....+|++||+|++++ +.+++|+...+..++++++++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc
Confidence 367999999999999999998 2445899999999999 99999998888888999999998
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.24 E-value=3.2e-11 Score=92.29 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=58.7
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
|.+|||+|||+|.+.+.++..+..+++++|+|+.++ +++++|+..+++.++++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhch
Confidence 358999999999999999988867999999999999 999999999999888999999998876
No 34
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.23 E-value=6.4e-11 Score=109.74 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=71.4
Q ss_pred eeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 027179 119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (227)
Q Consensus 119 r~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a 195 (227)
.++..+++.+..+.+ +.+.+.+.+++.. .+.+|||||||+|.|++.++. ++.+|++||+++.|+ +.+
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl~la~-~~~~v~~vE~~~~av-~~a 235 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSLALAQ-NFRRVLATEIAKPSV-NAA 235 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHHHHHH-hCCEEEEEECCHHHH-HHH
Confidence 566666665554443 4555555565532 234699999999999996654 457999999999999 999
Q ss_pred HHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 196 IPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 196 r~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
++|++.|+++ +++++++|+.+++..
T Consensus 236 ~~n~~~~~~~-~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 236 QYNIAANNID-NVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence 9999999996 599999999998864
No 35
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=5.9e-11 Score=118.75 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~-~~v~~i~gDa~~~L~~~ 222 (227)
.+++|||||||||.+++.++..|+.+|++||+|+.|+ +++++|++.|++. ++++++++|++++++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc
Confidence 5789999999999999999998988999999999999 9999999999996 68999999999998653
No 36
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.19 E-value=7.3e-11 Score=101.54 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=87.3
Q ss_pred ccccccceEEEEecc--cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-
Q 027179 101 EERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR- 176 (227)
Q Consensus 101 ~~~~~~~~L~ii~G~--~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~- 176 (227)
..+..+.+++++.|. |.+..+.+..+. .+||.++.+.+.+++.+.. .+.+|||+|||+|.+++.++..
T Consensus 38 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~ 109 (251)
T TIGR03534 38 ARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKER 109 (251)
T ss_pred HHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHC
Confidence 334445677777774 678888876554 6999999888887766542 3468999999999999999875
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
...+|+++|+++.++ +.+++|++.+++. +++++++|+.+.+
T Consensus 110 ~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~ 150 (251)
T TIGR03534 110 PDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQSDWFEPL 150 (251)
T ss_pred CCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhccC
Confidence 345899999999999 9999999999986 6999999997644
No 37
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.18 E-value=4.8e-11 Score=103.26 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.++.+|+|+|||.|.|+|.+|+ ..++.|+|+|+||+|+ +.+++|++.|+++++++++++|+.+++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 4678999999999999999997 3456899999999999 9999999999999999999999999886
No 38
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=5.2e-11 Score=110.48 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.+|.+|+|+|||.|.|+|.+|+.|+..|+|+|+||+|+ +.+++|+++|++.++++.++||+.++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 46899999999999999999999887799999999999 99999999999998899999999998876
No 39
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5e-11 Score=114.94 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=82.7
Q ss_pred cceEEEEecc------cCCeeecCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc
Q 027179 106 HRLLQVLGGK------ARRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176 (227)
Q Consensus 106 ~~~L~ii~G~------~~Gr~L~v~~g~~~RPtt---e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~ 176 (227)
.+.++++.|. +.|.+|.++++.+..--+ |++...+=+|+.. ..++.++|+|||||.||++++ +
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l-------~~~k~llDv~CGTG~iglala-~ 403 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL-------PADKTLLDVCCGTGTIGLALA-R 403 (534)
T ss_pred CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC-------CCCcEEEEEeecCCceehhhh-c
Confidence 3467777764 789999999887544333 3333333344432 356899999999999999765 5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 177 Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
++++|++||+++.|+ +.|++|++.||++ |.+|++|.+++.+..+
T Consensus 404 ~~~~ViGvEi~~~aV-~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl 447 (534)
T KOG2187|consen 404 GVKRVIGVEISPDAV-EDAEKNAQINGIS-NATFIVGQAEDLFPSL 447 (534)
T ss_pred cccceeeeecChhhc-chhhhcchhcCcc-ceeeeecchhhccchh
Confidence 688999999999999 9999999999997 5999999888776554
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.14 E-value=2.8e-10 Score=102.34 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
|.+.+|||.+..+.+-. +. .++.+|||+|||||.+++.+++.|+.+|++||+|+.++ +.+++|++.|++.
T Consensus 139 gtG~h~tt~l~l~~l~~-~~--------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~ 208 (288)
T TIGR00406 139 GTGTHPTTSLCLEWLED-LD--------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVS 208 (288)
T ss_pred cCCCCHHHHHHHHHHHh-hc--------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence 35688999876655422 21 35689999999999999999888888999999999999 9999999999988
Q ss_pred CcEEEEEccH
Q 027179 206 DVSSIHTVRV 215 (227)
Q Consensus 206 ~~v~~i~gDa 215 (227)
+++.++.+|.
T Consensus 209 ~~~~~~~~~~ 218 (288)
T TIGR00406 209 DRLQVKLIYL 218 (288)
T ss_pred cceEEEeccc
Confidence 7777777653
No 41
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.14 E-value=3.8e-10 Score=106.28 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=74.0
Q ss_pred cCCeeecCCCCCCCCC---CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Q 027179 116 ARRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (227)
Q Consensus 116 ~~Gr~L~v~~g~~~RP---tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~ 192 (227)
+.|.++.+.++.+... ..+.+.+.+..++.. ..+.+|||+|||+|.+++.++..+ .+|++||+++.++
T Consensus 257 ~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av- 327 (431)
T TIGR00479 257 SGDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESV- 327 (431)
T ss_pred ECCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHH-
Confidence 3477788876654332 233444555555432 345799999999999999988764 5899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 193 NVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 193 ~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
+.+++|++.|++. +++++++|+.+++..
T Consensus 328 ~~a~~n~~~~~~~-nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 328 EKAQQNAELNGIA-NVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhCCC-ceEEEeCCHHHHHHH
Confidence 9999999999985 699999999987754
No 42
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.14 E-value=1.6e-10 Score=107.03 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=62.9
Q ss_pred CeeecCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179 118 RKKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (227)
Q Consensus 118 Gr~L~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ 194 (227)
+..|.++++.+..+.++ .+.+.+.+|+.. .+..+||||||+|.||+.+|.. +.+|+|||+++.|+ +.
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~--------~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~ 233 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDL--------SKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-ED 233 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT---------TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhc--------CCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HH
Confidence 55667766666555554 333444444442 2337999999999999998765 46899999999999 99
Q ss_pred HHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 195 LIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 195 ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
|++|++.|+++ +++++++++.++..
T Consensus 234 A~~Na~~N~i~-n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 234 ARENAKLNGID-NVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHTT---SEEEEE--SHHCCC
T ss_pred HHHHHHHcCCC-cceEEEeeccchhH
Confidence 99999999996 59999999877543
No 43
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=2.5e-10 Score=100.40 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 126 g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
|.+++++|..+.+.+...+ .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.+++|++.|++.
T Consensus 99 gtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~ 168 (250)
T PRK00517 99 GTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVE 168 (250)
T ss_pred CCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence 3567888887665553321 36789999999999999998888887899999999999 9999999999986
Q ss_pred CcEEEEEcc
Q 027179 206 DVSSIHTVR 214 (227)
Q Consensus 206 ~~v~~i~gD 214 (227)
+++.+..+|
T Consensus 169 ~~~~~~~~~ 177 (250)
T PRK00517 169 LNVYLPQGD 177 (250)
T ss_pred ceEEEccCC
Confidence 556555543
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=5.2e-10 Score=93.61 Aligned_cols=81 Identities=26% Similarity=0.211 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
.-++.+.+++.+++++.. .++.+|||+|||+|.+++.+++.+ ..+|+++|+++.++ +.+++|++.+++. +
T Consensus 12 ~~~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~ 82 (187)
T PRK08287 12 VPMTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-N 82 (187)
T ss_pred CCCchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-C
Confidence 337778888888887754 356799999999999999998764 46899999999999 9999999999885 6
Q ss_pred EEEEEccHHHH
Q 027179 208 SSIHTVRVETF 218 (227)
Q Consensus 208 v~~i~gDa~~~ 218 (227)
++++++|+...
T Consensus 83 i~~~~~d~~~~ 93 (187)
T PRK08287 83 IDIIPGEAPIE 93 (187)
T ss_pred eEEEecCchhh
Confidence 99999997543
No 45
>PRK14967 putative methyltransferase; Provisional
Probab=99.12 E-value=5.3e-10 Score=96.45 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=70.4
Q ss_pred cCCeeecCCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179 116 ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (227)
Q Consensus 116 ~~Gr~L~v~~g~-~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ 194 (227)
+.|..|.+++|. .++..++.+. +++.... ..++.+|||+|||+|.+++.++..++.+|+++|+|+.++ +.
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~----~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~ 74 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLA----DALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RS 74 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHH----HHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HH
Confidence 456777787763 3444444333 3333211 135679999999999999998887777999999999999 99
Q ss_pred HHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 195 LIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 195 ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
+++|++.+++ +++++++|+.+.+
T Consensus 75 a~~n~~~~~~--~~~~~~~d~~~~~ 97 (223)
T PRK14967 75 ARLNALLAGV--DVDVRRGDWARAV 97 (223)
T ss_pred HHHHHHHhCC--eeEEEECchhhhc
Confidence 9999999987 4889999988754
No 46
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=6.1e-11 Score=99.11 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=74.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~ 206 (227)
....||.+.++..++..+.+..+ +.+++.++|||||+|.+++.++..++..|+++|++|+|+ +.+.+|++.+.++
T Consensus 23 LEQY~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq- 97 (185)
T KOG3420|consen 23 LEQYPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ- 97 (185)
T ss_pred hhhCCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh-
Confidence 35778888888888888766543 589999999999999999988888889999999999999 9999999999984
Q ss_pred cEEEEEccHHHHH
Q 027179 207 VSSIHTVRVETFL 219 (227)
Q Consensus 207 ~v~~i~gDa~~~L 219 (227)
+.++|+|..+..
T Consensus 98 -idlLqcdildle 109 (185)
T KOG3420|consen 98 -IDLLQCDILDLE 109 (185)
T ss_pred -hheeeeeccchh
Confidence 689999987643
No 47
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.07 E-value=6.2e-10 Score=104.38 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHHHHH---HhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 126 GMDVRPMMEVVKGAAFDIL---QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 126 g~~~RPtte~v~ealf~~L---~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
..+++|.++.-+...+..+ ....+ ...+-+|||+|||||.+||+++++ |+.+|+++|+|+.|+ +.+++|++
T Consensus 15 ~vFYNP~~~~nRDlsv~~~~~~~~~~~---~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~ 90 (374)
T TIGR00308 15 TVFYNPRMQFNRDLSVTCIQAFDNLYG---KECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVE 90 (374)
T ss_pred CcccCchhhccccHHHHHHHHHHHhhC---CcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHH
Confidence 3588888865443322211 11100 011348999999999999999987 788999999999999 99999999
Q ss_pred HhCCCCcEEEEEccHHHHHHHH
Q 027179 201 WTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 201 ~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
.|++. +++++++|+.+++...
T Consensus 91 ~N~~~-~~~v~~~Da~~~l~~~ 111 (374)
T TIGR00308 91 YNSVE-NIEVPNEDAANVLRYR 111 (374)
T ss_pred HhCCC-cEEEEchhHHHHHHHh
Confidence 99986 5899999999998764
No 48
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.99 E-value=3.3e-09 Score=99.67 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=57.1
Q ss_pred CCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
+.+|||+|||||.+|+.++.. ++.+|+++|+|+.|+ +.+++|++.|++. +++++++|+.+++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~-~~~v~~~Da~~~l~~ 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLE-NEKVFNKDANALLHE 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-ceEEEhhhHHHHHhh
Confidence 468999999999999998764 667899999999999 9999999999996 478999999888753
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.99 E-value=3.3e-09 Score=81.04 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.+++.++++ +..+|+++|.++.++ +.+++|++.+++. +++++.+|+.+.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~ 81 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEA 81 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEecccccc
Confidence 4679999999999999999876 346899999999999 9999999999876 589999987653
No 50
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.98 E-value=2.2e-09 Score=92.11 Aligned_cols=80 Identities=13% Similarity=-0.052 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 027179 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (227)
Q Consensus 132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~ 209 (227)
..+.+...+.+.+.. .++.+|||+|||+|.+++.++... ..+|++||++++++ +.+++|++.+++. +++
T Consensus 61 ~~p~~~~~~~~~l~~-------~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~ 131 (215)
T TIGR00080 61 SAPHMVAMMTELLEL-------KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVI 131 (215)
T ss_pred chHHHHHHHHHHhCC-------CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeE
Confidence 344455555565543 467899999999999999888753 24799999999999 9999999999984 699
Q ss_pred EEEccHHHHHH
Q 027179 210 IHTVRVETFLE 220 (227)
Q Consensus 210 ~i~gDa~~~L~ 220 (227)
++++|+.+.+.
T Consensus 132 ~~~~d~~~~~~ 142 (215)
T TIGR00080 132 VIVGDGTQGWE 142 (215)
T ss_pred EEECCcccCCc
Confidence 99999876543
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.97 E-value=2.4e-09 Score=86.50 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCeEEEeccCCCHHHHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS-R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas-~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
++.+|||+|||+|.+++.++. . ...++++||+|++++ +.++++++.+++. +++++++|+.+ +.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LP 67 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cc
Confidence 567999999999999999983 3 346899999999999 9999999999997 79999999988 54
No 52
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=2.5e-09 Score=91.45 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
++.+...+++.+.. .++.+|||+|||||.++..++.. + ..+|+++|++++++ +.+++|++.+++.+++++
T Consensus 57 ~p~~~~~~~~~l~~-------~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~ 128 (205)
T PRK13944 57 APHMVAMMCELIEP-------RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEV 128 (205)
T ss_pred hHHHHHHHHHhcCC-------CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEE
Confidence 34444555555543 35689999999999999887763 2 35899999999999 999999999998778999
Q ss_pred EEccHHHHHH
Q 027179 211 HTVRVETFLE 220 (227)
Q Consensus 211 i~gDa~~~L~ 220 (227)
+++|+.+.+.
T Consensus 129 ~~~d~~~~~~ 138 (205)
T PRK13944 129 YHGDGKRGLE 138 (205)
T ss_pred EECCcccCCc
Confidence 9999876543
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=3.8e-09 Score=99.30 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=72.8
Q ss_pred CeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 027179 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 118 Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar 196 (227)
+..+...+|.+-+-.-|.=...+++.+.. ..+.+|||||||+|.+++.+++++ ..+|++||+|+.|+ +.++
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~ 269 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR 269 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence 45555567777777666555556666543 234689999999999999998864 46899999999999 9999
Q ss_pred HHHHHhCCC--CcEEEEEccHHHHH
Q 027179 197 PNLEWTGFL--DVSSIHTVRVETFL 219 (227)
Q Consensus 197 ~N~~~ngl~--~~v~~i~gDa~~~L 219 (227)
+|++.|+.. ++++++.+|+++.+
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC
Confidence 999999854 36899999986543
No 54
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.94 E-value=8e-09 Score=90.64 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=60.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
...++|||+|||+|.-++.++. .+.++|+++|++++++ +.+++|++.+|+.++++++++|+.+.|..+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 3577999999999997777664 3457999999999999 999999999999989999999999998775
No 55
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3e-09 Score=97.20 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=110.6
Q ss_pred ccceeeeeccCCCCCChHHHHHHHHHcCCCCccc-cCCCCCcccccccCCCCccccccccccccccccceEEE-------
Q 027179 40 RYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV------- 111 (227)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~l~~~er~~~~~~~~~~~~~~~~~~~~~~~~~L~i------- 111 (227)
..-++.-+.+...+..+..-++++....-+-.++ +|++-.+-++... +-.+.....+..+.+ |.++-+
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k--~l~~~~~~~~~~~a~--~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEK--MLEKYGGPTKTDSAR--HCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHH--HHHHhcCccccchHh--hcceeEeecCCCC
Confidence 5677778888888878777778888887777666 4444443321100 000000000000000 000000
Q ss_pred -------Eecc--cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEE
Q 027179 112 -------LGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEV 181 (227)
Q Consensus 112 -------i~G~--~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V 181 (227)
.... -...+|...+|.+-+-..|.=.+.+++.+... .+.+|||+|||-|.+|+.+++.. ..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 0011 13456667888887777776666777776642 34499999999999999999864 5799
Q ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 182 ~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
+.||+|..|+ +.+++|++.|++++. +++.+|+++..+.
T Consensus 186 tmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~ 223 (300)
T COG2813 186 TLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPVEG 223 (300)
T ss_pred EEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccccc
Confidence 9999999999 999999999999753 8888898876654
No 56
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.93 E-value=2.3e-09 Score=90.31 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=53.9
Q ss_pred eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
.|+|+|||.|.-+|.+|+.. .+|++||+|+.-+ +.++.|++..|+.++++++++|+++.+.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~ 64 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRL 64 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhc
Confidence 69999999999999999875 5899999999999 999999999999999999999999977654
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.93 E-value=7.6e-09 Score=88.48 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
+..+.+++.+++++... ...+.+|||+|||+|.++..++..+. +|++||+++.++ +.+++++..++..+++++
T Consensus 36 ~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~ 108 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEF 108 (219)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEE
Confidence 34555666677777631 13578999999999999999988765 899999999999 999999988887667999
Q ss_pred EEccHHH
Q 027179 211 HTVRVET 217 (227)
Q Consensus 211 i~gDa~~ 217 (227)
+++|+.+
T Consensus 109 ~~~d~~~ 115 (219)
T TIGR02021 109 EVNDLLS 115 (219)
T ss_pred EECChhh
Confidence 9998765
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.92 E-value=7.2e-09 Score=86.15 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=54.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
++.+|||+|||+|.+++.++..+. +|+++|+++.++ +.+++|++.+++ +++++++|+.+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~ 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc
Confidence 557899999999999999988876 899999999999 999999999987 4889999987643
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.92 E-value=4.7e-09 Score=89.60 Aligned_cols=62 Identities=26% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.+++.++. ....+|++||+++.++ +.+++|++.+++++ ++++++|+.+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~d~~~~ 107 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHGRAEEF 107 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEeccHhhC
Confidence 378999999999999998876 3456899999999999 99999999999865 99999999774
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=5.9e-09 Score=86.18 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.++.++++++ .+|++||+|+.++ +.+++|+.. .++++++++|+.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~ 71 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKF 71 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcC
Confidence 56799999999999999999884 6899999999999 999999854 24799999999875
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=1.3e-08 Score=89.43 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.+.+|||+|||+|.+++.++..|. +|++||+++.++ +.+++++...++.++++++++|+.+..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 467999999999999999998874 899999999999 999999999998778999999998753
No 62
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=9.4e-09 Score=88.59 Aligned_cols=80 Identities=13% Similarity=0.011 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
..+.+.+...+++.+.. .++.+|||+|||||.++..++.. +. .+|++||++++.+ +.+++|++.+++. +
T Consensus 58 ~~~~p~~~~~~~~~l~~-------~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~ 128 (212)
T PRK13942 58 TISAIHMVAIMCELLDL-------KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-N 128 (212)
T ss_pred EeCcHHHHHHHHHHcCC-------CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-C
Confidence 34455566666666653 46789999999999999887764 32 5899999999999 9999999999985 6
Q ss_pred EEEEEccHHHH
Q 027179 208 SSIHTVRVETF 218 (227)
Q Consensus 208 v~~i~gDa~~~ 218 (227)
++++++|+.+.
T Consensus 129 v~~~~gd~~~~ 139 (212)
T PRK13942 129 VEVIVGDGTLG 139 (212)
T ss_pred eEEEECCcccC
Confidence 99999998654
No 63
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=1.5e-08 Score=92.50 Aligned_cols=75 Identities=25% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (227)
Q Consensus 133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~ 212 (227)
.+.+...+.+++.. .++.+|||+|||||.+.++++..|+ +|+++|+|+.++ +.+++|++.+++.+ +++++
T Consensus 167 ~~~la~~~~~l~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 167 DPKLARAMVNLARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CHHHHHHHHHHhCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEe
Confidence 35566666555432 3677999999999999999887765 799999999999 99999999999976 88999
Q ss_pred ccHHH
Q 027179 213 VRVET 217 (227)
Q Consensus 213 gDa~~ 217 (227)
+|+.+
T Consensus 237 ~D~~~ 241 (329)
T TIGR01177 237 GDATK 241 (329)
T ss_pred cchhc
Confidence 99875
No 64
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=3.5e-08 Score=86.57 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=54.4
Q ss_pred CCCeEEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.+++.++. ....+|++||.|+.++ +.+++|++.++..++++++++|+.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhh
Confidence 567999999999999988775 2335899999999999 9999999998887789999999875
No 65
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.84 E-value=6.4e-09 Score=96.51 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=58.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+++.|||+|||||.+++.+|+.|+.+|++||.+.-| +.+++.++.|++++.+++++|.+.+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEE
Confidence 6789999999999999999999999999999998877 69999999999999999999998764
No 66
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=1.6e-08 Score=85.33 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CC--------EEEEEeCCHHHHHHHHHHH
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CS--------EVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~--------~V~aVEis~~Al~~~ar~N 198 (227)
+-|..+.++.++++.... .++..|||.|||||+|-||++..+ .. +++++|+++.++ +.+++|
T Consensus 9 ~a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N 80 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGAREN 80 (179)
T ss_dssp STSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHH
Confidence 445667777777655443 366799999999999999998643 22 388999999999 999999
Q ss_pred HHHhCCCCcEEEEEccHHHH
Q 027179 199 LEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 199 ~~~ngl~~~v~~i~gDa~~~ 218 (227)
++..++.+.+.+.+.|+.+.
T Consensus 81 ~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 81 LKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT-CGGEEEEE--GGGG
T ss_pred HHhcccCCceEEEecchhhc
Confidence 99999988899999998764
No 67
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.82 E-value=8.9e-09 Score=91.03 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v 208 (227)
.--|+|.+++++-...... .....|+|.|||.|.-.|-.+.+|+ .|++||+||.-+ .+|+.|++..|++++|
T Consensus 74 fsvTpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rI 145 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRI 145 (263)
T ss_pred EEeccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCcee
Confidence 3445566666654444331 2456899999999999999998887 799999999999 9999999999999999
Q ss_pred EEEEccHHHHHHHHh
Q 027179 209 SIHTVRVETFLERAE 223 (227)
Q Consensus 209 ~~i~gDa~~~L~~~~ 223 (227)
+|+|||+++....++
T Consensus 146 tFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 146 TFICGDFLDLASKLK 160 (263)
T ss_pred EEEechHHHHHHHHh
Confidence 999999998877654
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.81 E-value=2.4e-08 Score=92.54 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=71.4
Q ss_pred CeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 027179 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 118 Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar 196 (227)
+..+...+|.+-++..+.-.+.+++.+.. ....+|||+|||+|.+++.++.++ ..+|+++|+|+.|+ +.++
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~ 237 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSR 237 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence 56677778887777776655666666643 234589999999999999988764 35899999999999 9999
Q ss_pred HHHHHhCCCCcEEEEEccHHHH
Q 027179 197 PNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 197 ~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
+|++.|++. .+++.+|+++.
T Consensus 238 ~nl~~n~l~--~~~~~~D~~~~ 257 (342)
T PRK09489 238 ATLAANGLE--GEVFASNVFSD 257 (342)
T ss_pred HHHHHcCCC--CEEEEcccccc
Confidence 999999985 46777887653
No 69
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.81 E-value=2.2e-08 Score=88.95 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||||-+++.++.. |..+|+++|+|+.++ +.+++-+...+..+ ++++.+|+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVGDAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEechhh
Confidence 6889999999999999998875 667999999999999 99999999888876 9999999976
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.80 E-value=4.6e-08 Score=89.91 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-- 204 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-- 204 (227)
..+|+..+.+.+.+++++.... +.++.+|||+|||+|.+++.++..|. +|+++|+|+.++ +.+++|++..+.
T Consensus 120 l~~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~ 193 (315)
T PLN02585 120 LDIRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAAL 193 (315)
T ss_pred eecccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccc
Confidence 3577888888888888876531 13578999999999999999998875 799999999999 999999876521
Q ss_pred --CCcEEEEEccHHH
Q 027179 205 --LDVSSIHTVRVET 217 (227)
Q Consensus 205 --~~~v~~i~gDa~~ 217 (227)
..++++.++|+.+
T Consensus 194 ~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 194 PPEVLPKFEANDLES 208 (315)
T ss_pred ccccceEEEEcchhh
Confidence 1357788888654
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.78 E-value=3.1e-08 Score=83.97 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=57.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
...++||+|||+|.+++.++.. ...+|++||+++.++ +.+++|++.+++. +++++++|+.+.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHh
Confidence 4568999999999999999875 345899999999999 9999999999986 699999999887643
No 72
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.78 E-value=3e-08 Score=84.32 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+.+|||+|||+|.+++.++.+|. +|++||+|+.++ +.++++++.+++. +++++++|+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~ 89 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLNN 89 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChhh
Confidence 567999999999999999998875 899999999999 9999999998885 48888888765
No 73
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=5.4e-08 Score=88.53 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g 213 (227)
+.+.+.+.+.+.. .++.+|||+|||+|.++..++..+ .+|++||+|+.++ +.+++|+..++..++++++++
T Consensus 22 ~~i~~~Iv~~~~~-------~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 22 PLVLDKIVEKAAI-------KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEEC
Confidence 3445555554432 367899999999999999988775 4799999999999 999999988876668999999
Q ss_pred cHHHH
Q 027179 214 RVETF 218 (227)
Q Consensus 214 Da~~~ 218 (227)
|+.+.
T Consensus 93 Dal~~ 97 (294)
T PTZ00338 93 DALKT 97 (294)
T ss_pred CHhhh
Confidence 99764
No 74
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.77 E-value=7.3e-08 Score=82.03 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
...+.+.+.++.++.... ..++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++....+..+++++
T Consensus 43 ~~~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~ 116 (230)
T PRK07580 43 AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITF 116 (230)
T ss_pred chHHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEE
Confidence 334556666777775421 13567999999999999999988775 699999999999 999999988887667888
Q ss_pred EEccH
Q 027179 211 HTVRV 215 (227)
Q Consensus 211 i~gDa 215 (227)
+.+|+
T Consensus 117 ~~~d~ 121 (230)
T PRK07580 117 EVGDL 121 (230)
T ss_pred EEcCc
Confidence 88884
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.76 E-value=3.9e-08 Score=84.02 Aligned_cols=64 Identities=14% Similarity=0.021 Sum_probs=55.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
++.+|||+|||+|.+++.++.. ...+|++||+|+.++ +.+++|++.+++. +++++++|+.+.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHH
Confidence 5679999999999999998765 335899999999999 9999999999884 69999999954443
No 76
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.75 E-value=2.6e-08 Score=88.95 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (227)
Q Consensus 135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD 214 (227)
.+.+.+++++.. .++.+|||+|||+|.++..++.++. +|++||+|+.++ +.+++|+.. ++++++++|
T Consensus 29 ~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D 95 (272)
T PRK00274 29 NILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEGD 95 (272)
T ss_pred HHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEECh
Confidence 345555565543 3667999999999999999998875 899999999999 999987742 479999999
Q ss_pred HHHH
Q 027179 215 VETF 218 (227)
Q Consensus 215 a~~~ 218 (227)
+.++
T Consensus 96 ~~~~ 99 (272)
T PRK00274 96 ALKV 99 (272)
T ss_pred hhcC
Confidence 9864
No 77
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.75 E-value=5e-08 Score=83.54 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.+++|++.+++. +++++++|+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~ 107 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGLH-NVELVHGNAME 107 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-ceEEEEechhc
Confidence 5689999999999999988764 3 35899999999999 9999999888874 69999999865
No 78
>PLN02476 O-methyltransferase
Probab=98.74 E-value=1.1e-07 Score=86.21 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
...++|||+|+|+|..++.++.. ..++|+++|.+++.+ +.|++|++++|+.++++++.+|+.+.|+++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSM 186 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 45789999999999999998863 235799999999999 999999999999989999999999999875
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=98.74 E-value=5.2e-08 Score=79.98 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=55.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~-v~~i~gDa~~~L 219 (227)
++.+|||+|||+|.+++.++.++ .+|+++|++++++ +.+++|+..+++.++ +.++++|+.+.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 86 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF 86 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc
Confidence 56799999999999999998885 5899999999999 999999999988644 889999986644
No 80
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.73 E-value=3.5e-08 Score=83.82 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++.+++. +++..+|+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~ 87 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDIN 87 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccch
Confidence 457999999999999999998875 799999999999 9999999888873 566666653
No 81
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.73 E-value=7.5e-08 Score=88.74 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.++.+|||+|||+|.++..++..|+ +|++||.+++++ +.++++++..+...+++++++|+.+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHh
Confidence 3567999999999999998887775 799999999999 99999988776656799999998764
No 82
>PLN02244 tocopherol O-methyltransferase
Probab=98.73 E-value=5.2e-08 Score=89.69 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.+++.++.....+|++||+++.++ +.++++++.+++.++++++++|+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCccc
Confidence 5679999999999999998875334899999999999 9999999999987789999999865
No 83
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.71 E-value=1.7e-07 Score=81.36 Aligned_cols=63 Identities=10% Similarity=-0.050 Sum_probs=53.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~---Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.+++.++.. ...+|++||+++.++ +.++++++..+...+++++++|+.+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhC
Confidence 5679999999999999988864 245899999999999 99999998877656799999998753
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.68 E-value=5.8e-08 Score=82.77 Aligned_cols=75 Identities=15% Similarity=-0.027 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g 213 (227)
+.+...+...+.. .++.+|||+|||+|.++..++..+ .+|++||+++.++ +.+++|++.+++. +++++++
T Consensus 64 p~~~~~l~~~l~~-------~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~-~v~~~~~ 133 (212)
T PRK00312 64 PYMVARMTELLEL-------KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLH-NVSVRHG 133 (212)
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCC-ceEEEEC
Confidence 3344445455543 367899999999999998777664 4899999999999 9999999999986 4999999
Q ss_pred cHHHH
Q 027179 214 RVETF 218 (227)
Q Consensus 214 Da~~~ 218 (227)
|+.+.
T Consensus 134 d~~~~ 138 (212)
T PRK00312 134 DGWKG 138 (212)
T ss_pred CcccC
Confidence 97653
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.67 E-value=1.1e-07 Score=85.31 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|..++.++..|. +|++||+|+.++ +.+++|++.+++ +++++..|+.+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~ 178 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS 178 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc
Confidence 456999999999999999998875 899999999999 999999999888 47777777654
No 86
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.65 E-value=3e-07 Score=79.77 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
.+........++..+... ...++||++|||+|.-++.+|.. + .++|+.+|.+++.. +.|++|+++.|+.++
T Consensus 26 ~~~i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~ 98 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDR 98 (205)
T ss_dssp GGSHHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGG
T ss_pred CCccCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCc
Confidence 344444445555555432 35679999999999999999863 2 36899999999998 999999999999999
Q ss_pred EEEEEccHHHHHHHHh
Q 027179 208 SSIHTVRVETFLERAE 223 (227)
Q Consensus 208 v~~i~gDa~~~L~~~~ 223 (227)
++++.+|+.+.|.++.
T Consensus 99 I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 99 IEVIEGDALEVLPELA 114 (205)
T ss_dssp EEEEES-HHHHHHHHH
T ss_pred EEEEEeccHhhHHHHH
Confidence 9999999999998764
No 87
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.65 E-value=1.2e-07 Score=87.52 Aligned_cols=65 Identities=17% Similarity=-0.007 Sum_probs=55.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.++.+|||+|||||.+++.++.. + ..+|++||++++++ +.+++|++.++++ +++++++|+.+.+.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~ 145 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVP 145 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence 35689999999999999998864 2 24799999999999 9999999999985 69999999876543
No 88
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.65 E-value=7.3e-08 Score=84.82 Aligned_cols=62 Identities=27% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||||.+++.++.. + ..+|+++|+++.++ +.+++.+...+.. +++++++|+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~~da~~ 109 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQGDAED 109 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE-BTTB
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEEcCHHH
Confidence 46789999999999999998864 3 35899999999999 9999999998876 79999999875
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.65 E-value=6.4e-08 Score=91.91 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=67.4
Q ss_pred EEE----Eecc--cCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEE
Q 027179 109 LQV----LGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVH 182 (227)
Q Consensus 109 L~i----i~G~--~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~ 182 (227)
+++ |.|. |+|..+.+.++.. +++ .+++.+.. .++.+|||+|||+|.+++.++.....+|+
T Consensus 228 ~~y~~~~i~~~~~f~g~~~~v~~~v~---~te----~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~~~~~v~ 293 (475)
T PLN02336 228 VQYKSSGILRYERVFGEGFVSTGGLE---TTK----EFVDKLDL-------KPGQKVLDVGCGIGGGDFYMAENFDVHVV 293 (475)
T ss_pred hccccccHHHHHHHhCCCCCCCchHH---HHH----HHHHhcCC-------CCCCEEEEEeccCCHHHHHHHHhcCCEEE
Confidence 677 7663 7788777766532 233 33344332 35679999999999999988875334899
Q ss_pred EEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 183 FVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 183 aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+||+|+.++ +.+++|+. +...+++++++|+.+
T Consensus 294 gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 294 GIDLSVNMI-SFALERAI--GRKCSVEFEVADCTK 325 (475)
T ss_pred EEECCHHHH-HHHHHHhh--cCCCceEEEEcCccc
Confidence 999999999 99999876 334468999999764
No 90
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.63 E-value=5e-08 Score=86.83 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
..+.+|||+|||-|.++..+|+.|+ .|+++|+++.++ +.|+..+..+++. ++..+..+++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~ 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLAS 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHh
Confidence 4788999999999999999999995 899999999999 9999999999884 5555555555444
No 91
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.63 E-value=1.3e-07 Score=83.75 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|||+|||+|.+++.++.++ .+|++||+|+.++ +.+++|+.. .++++++++|+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLA-EFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHhcc---CCCEEEEEecccc
Confidence 357899999999999999998885 5899999999999 999988754 2479999999876
No 92
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.62 E-value=4e-07 Score=84.05 Aligned_cols=105 Identities=12% Similarity=-0.016 Sum_probs=69.1
Q ss_pred ccCCeee-cCCCCCC--CCCCHHHHHHHHHHHHHhcC-CCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHH
Q 027179 115 KARRKKL-LSPKGMD--VRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPW 189 (227)
Q Consensus 115 ~~~Gr~L-~v~~g~~--~RPtte~v~ealf~~L~~~~-~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~ 189 (227)
.+.|.+. .+|++.- +-|..-.....+.+.|.... +......+.++||+|||+|.+...++.+ ...+++++|+|+.
T Consensus 70 ~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~ 149 (321)
T PRK11727 70 HFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ 149 (321)
T ss_pred HhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH
Confidence 4567774 7888753 33434333333434442210 0000124578999999999887766653 3358999999999
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEE-ccHHHHHH
Q 027179 190 VVSNVLIPNLEWT-GFLDVSSIHT-VRVETFLE 220 (227)
Q Consensus 190 Al~~~ar~N~~~n-gl~~~v~~i~-gDa~~~L~ 220 (227)
|+ +.|++|++.| ++.+++++++ .|..+.+.
T Consensus 150 Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 150 AL-ASAQAIISANPGLNGAIRLRLQKDSKAIFK 181 (321)
T ss_pred HH-HHHHHHHHhccCCcCcEEEEEccchhhhhh
Confidence 99 9999999999 8988898864 45444443
No 93
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.61 E-value=1.5e-07 Score=83.75 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.++.+|||+|||+|..++.++.. ..++|+++|+++.++ +.+++|++++++. +++++++|+.++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~~~~ 135 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL-NVAVTNFDGRVFG 135 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEecCCHHHhh
Confidence 36789999999999999988763 235899999999999 9999999999986 5999999987643
No 94
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.59 E-value=1.6e-07 Score=84.65 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+|.+|||+|||-|.+++.++.+ |+ +|++|.+|++-. +.+++.++..|+.+++++..+|..++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc
Confidence 47889999999999999999987 76 899999999999 99999999999999999999998764
No 95
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=1.7e-07 Score=89.02 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.+++|++++|+.+ ++++++|+.+..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~ 314 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVH 314 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCccccc
Confidence 35679999999999999998874 356899999999999 99999999999964 999999997754
No 96
>PRK04457 spermidine synthase; Provisional
Probab=98.58 E-value=3.7e-07 Score=81.48 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
++.+|||+|||+|.++..++.. +..+|++||+|++.+ +.+++++...+..++++++.+|+.+++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 5678999999999999988764 456899999999999 999999876665568999999999998753
No 97
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.58 E-value=2e-07 Score=89.45 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=50.9
Q ss_pred CCeEEEeccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~G-----a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
+..|+|+|||+|.++..+++.+ +.+|+|||.|+.|+ ..+++-++.|+..++|+++++|+.++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 5789999999999998877654 67999999999998 66666668999989999999998763
No 98
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.57 E-value=1.1e-07 Score=71.83 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=46.8
Q ss_pred EEEeccCCCHHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 159 VLDLgsGTG~isI~aas~---Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
|||+|||+|.....++.. +. .++++||+|++++ +.++++....+. +++++++|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHC
Confidence 799999999999998865 32 6899999999999 999999988776 589999999774
No 99
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.57 E-value=2.2e-07 Score=83.64 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=54.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+..+|||+|||+|.++++++++. ..+|+++|. +.++ +.+++|++..++.++++++.+|+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC
Confidence 45799999999999999998863 458999997 7888 9999999999998899999999874
No 100
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.57 E-value=9.2e-08 Score=83.23 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+.+.|||+|||.+++.|+.. +.+|++||.||.-. .++++|++.+|.. +++++.+|+.++
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~-n~evv~gDA~~y 92 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDV-NWEVVVGDARDY 92 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCc-ceEEEecccccc
Confidence 4478999999999999988766 78999999999998 9999999999975 699999999653
No 101
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.56 E-value=1.3e-07 Score=88.33 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+..++.|||+|||+|.++..++..|+++|++||.++-| +.|++=++-|++.++|++|.|.+++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIED 237 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccc
Confidence 47889999999999999999999999999999998876 6999999999999999999998875
No 102
>PRK00811 spermidine synthase; Provisional
Probab=98.54 E-value=1.5e-06 Score=78.29 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C--CCcEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l--~~~v~~i~gDa~~~L~~ 221 (227)
.+++|||+|||+|.++.++++. +..+|++||+|+..+ +.+++++...+ . +.+++++.+|+.+++..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhh
Confidence 5679999999999999999886 678999999999999 99999986542 2 35799999999999875
No 103
>PRK04266 fibrillarin; Provisional
Probab=98.53 E-value=4e-07 Score=79.87 Aligned_cols=60 Identities=15% Similarity=0.007 Sum_probs=49.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||||.+++.++.. +.++|+++|++++++ +.+.++++.. .++.++.+|+.+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~ 131 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARK 131 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCC
Confidence 46789999999999999998875 345899999999998 8888887653 357888888754
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.53 E-value=5.9e-07 Score=84.99 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.+..+||+|||+|.+.+.+|.+ ....++|||+++.++ +.+.+++..+++. ++.++++|+..++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~-NV~~i~~DA~~ll~ 186 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLK-NLLIINYDARLLLE 186 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHhhh
Confidence 4569999999999999999876 345899999999999 9999999999996 59999999987654
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.53 E-value=2.7e-07 Score=80.26 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
.+.+...+++.|.. .++.+|||+|||||.++--++.. |. .+|++||+++..+ +.+++|++..+.. ++++
T Consensus 57 ~P~~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~-nv~~ 127 (209)
T PF01135_consen 57 APSMVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID-NVEV 127 (209)
T ss_dssp -HHHHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH-SEEE
T ss_pred HHHHHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC-ceeE
Confidence 44555666677764 47889999999999999877764 43 4799999999998 9999999999986 6999
Q ss_pred EEccHHHHHHH
Q 027179 211 HTVRVETFLER 221 (227)
Q Consensus 211 i~gDa~~~L~~ 221 (227)
+++|...-+..
T Consensus 128 ~~gdg~~g~~~ 138 (209)
T PF01135_consen 128 VVGDGSEGWPE 138 (209)
T ss_dssp EES-GGGTTGG
T ss_pred EEcchhhcccc
Confidence 99998765443
No 106
>PRK10742 putative methyltransferase; Provisional
Probab=98.51 E-value=4.5e-07 Score=81.20 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=57.2
Q ss_pred eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh------C--CCCcEEEEEccHHHHHHHHh
Q 027179 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------G--FLDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n------g--l~~~v~~i~gDa~~~L~~~~ 223 (227)
+|||+++|+|..|++++++|+. |++||.++.+. .++++|++.. + +..+++++++|+.++|....
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 8999999999999999999986 99999999998 9999999984 2 22579999999999998643
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.51 E-value=4.9e-07 Score=81.87 Aligned_cols=67 Identities=7% Similarity=-0.158 Sum_probs=53.5
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
++.+|||||||||..+..++... ..+|++||+|++++ +.+++++....-..++.++++|+.+.+.-.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 45789999999999999888764 35899999999999 999999876432235788999998765433
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.51 E-value=6e-07 Score=76.04 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=53.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.+++.++..+ ..+|+++|+++.++ +.+++|+..++..++++++.+|+.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc
Confidence 56799999999999999988765 37899999999999 9999999887666678888888765
No 109
>PRK08317 hypothetical protein; Provisional
Probab=98.50 E-value=8.5e-07 Score=74.58 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 130 RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
||-.+.+++.++..+.. .++.+|||+|||+|.+++.++... ..+|+++|.++..+ +.++++... ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~ 70 (241)
T PRK08317 1 LPDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPN 70 (241)
T ss_pred CchHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCc
Confidence 45566667667666553 357899999999999999988652 46899999999998 899988332 2245
Q ss_pred EEEEEccHHH
Q 027179 208 SSIHTVRVET 217 (227)
Q Consensus 208 v~~i~gDa~~ 217 (227)
++++.+|+.+
T Consensus 71 ~~~~~~d~~~ 80 (241)
T PRK08317 71 VEFVRGDADG 80 (241)
T ss_pred eEEEeccccc
Confidence 7788877653
No 110
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.49 E-value=4.2e-07 Score=91.35 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC-------------------------------
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG------------------------------- 177 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G------------------------------- 177 (227)
+=|..|.++.+++... .. ...+..++|.+||||+|.||+|..+
T Consensus 170 ~Apl~etlAaa~l~~a-~w-----~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 170 EAPLKENLAAAILLRS-GW-----PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CCCCcHHHHHHHHHHc-CC-----CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 3355677777766432 11 0246799999999999999997521
Q ss_pred ------------CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 178 ------------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 178 ------------a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+++++|+|+.++ +.|++|++.+|+.++++++++|+.+.
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADL 295 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhc
Confidence 12699999999999 99999999999988899999999874
No 111
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.49 E-value=7.5e-07 Score=79.14 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~--ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||||.+++.++.. + ..+|++||+|++++ +.++++... .+..++++++++|+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEccccc
Confidence 35779999999999999988764 3 35899999999999 999877542 2223468999999865
No 112
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.49 E-value=5.5e-07 Score=79.29 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (227)
Q Consensus 135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD 214 (227)
.+.+.+++.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.++++... ..+++++++|
T Consensus 16 ~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~~D 83 (253)
T TIGR00755 16 SVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIEGD 83 (253)
T ss_pred HHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEECc
Confidence 445555555532 3578999999999999999988874 699999999999 899887743 3479999999
Q ss_pred HHH
Q 027179 215 VET 217 (227)
Q Consensus 215 a~~ 217 (227)
+.+
T Consensus 84 ~~~ 86 (253)
T TIGR00755 84 ALK 86 (253)
T ss_pred hhc
Confidence 875
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=3.6e-07 Score=83.17 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=59.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.+|++|||+|||-|.+++.+|.+-..+|++|++|++.. +.+++-++.-|++++++++..|..++-+.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccccc
Confidence 57899999999999999999987334899999999999 99999999999998899999998776554
No 114
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=5.4e-07 Score=85.36 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=54.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.++.+|||+|||+|..++.++..+. .+|+++|+++.++ +.+++|++.+|+. ++++++|+.+.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~ 305 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDP 305 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccc
Confidence 4678999999999999999987643 5899999999999 9999999999984 68999998754
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=98.48 E-value=4.1e-07 Score=81.06 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~----Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+.+|||+|||||.+++.++.+ ...+|++||+|+.|+ +++++|.. ++.++++|+..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~ 108 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALT 108 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhc
Confidence 4579999999999999998763 345899999999999 99998852 37899999875
No 116
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=6.3e-07 Score=85.06 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.++.+|||+|||+|..++.++.. +.++|+++|+++..+ +.+++|++.+|+. +++++++|+.+..
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~-~v~~~~~D~~~~~ 316 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLK-SIKILAADSRNLL 316 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCC-eEEEEeCChhhcc
Confidence 36789999999999999998864 346899999999999 9999999999996 4999999998654
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.45 E-value=1.3e-06 Score=78.02 Aligned_cols=63 Identities=21% Similarity=0.130 Sum_probs=52.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+|.+||+-|+|||+++..+++. ..++|+..|+.++-+ +.|++|++.+|+.+++++.+.|+.+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceec
Confidence 57899999999999999998863 347899999999999 9999999999998899999999963
No 118
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.45 E-value=8.1e-07 Score=78.34 Aligned_cols=62 Identities=26% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||+|..++.++.. |. .+|++||+++.++ +.+++|.+.+++. +++++++|+.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~ 139 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEA 139 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhh
Confidence 36789999999999998876653 44 4799999999999 9999999998885 68999998764
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.44 E-value=1.1e-06 Score=83.78 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.++.+|||+|||+|..++.++.. +..+|+++|+++..+ +.+++|+++.|+. +++++++|+.++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l 300 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERL 300 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhh
Confidence 46789999999999999988764 346899999999999 9999999999986 599999999764
No 120
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.43 E-value=8.1e-07 Score=75.72 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=52.2
Q ss_pred CeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
++|||+|||+|.+++.++... ..+|+++|+|+..+ +.+++|+...++.++++++.+|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~ 60 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSA 60 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccc
Confidence 379999999999999988753 45899999999999 999999999998888999998874
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.43 E-value=1.2e-06 Score=75.71 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=48.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.++||||||.|.-++.+|++|. .|+++|+|+.++ +.+++-++..+++ ++..+.|+.+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~ 88 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLND 88 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCC
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchh
Confidence 4667999999999999999999997 699999999999 9999988888884 7788877643
No 122
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.42 E-value=1.1e-06 Score=80.60 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++|||+|||+|.+++.++..|+.+|++||.++..+ ...+...+..+...+++++.+|+.+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 46789999999999999999988888899999999876 5444333333323468888888765
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=8.5e-07 Score=84.45 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=55.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~ 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc
Confidence 36789999999999999887753 345899999999999 9999999999985 6999999987653
No 124
>PHA03411 putative methyltransferase; Provisional
Probab=98.41 E-value=9.3e-07 Score=80.33 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=48.8
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
...+|||+|||+|.+++.++.+ +..+|++||+|+.++ +.+++|. .+++++++|+.++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~------~~v~~v~~D~~e~~ 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLL------PEAEWITSDVFEFE 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------cCCEEEECchhhhc
Confidence 3468999999999999988775 346899999999999 9999874 25789999998865
No 125
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=6.9e-07 Score=83.26 Aligned_cols=80 Identities=28% Similarity=0.266 Sum_probs=64.9
Q ss_pred CCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 128 DVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 128 ~~RPtt--e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
+.||++ +.+..++.|.... .+|..|||-|||||+|-|+|...|+ +|++.|++..++ +-++.|++..+++
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcC
Confidence 445433 5677777666553 5788999999999999999988887 799999999999 9999999999987
Q ss_pred CcEEEEEc-cHHH
Q 027179 206 DVSSIHTV-RVET 217 (227)
Q Consensus 206 ~~v~~i~g-Da~~ 217 (227)
+ +.++.. ||.+
T Consensus 246 ~-~~~~~~~Da~~ 257 (347)
T COG1041 246 D-YPVLKVLDATN 257 (347)
T ss_pred c-eeEEEeccccc
Confidence 4 666666 7754
No 126
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=1.1e-06 Score=83.22 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=53.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||+|..++.++.. +..+|+++|+++..+ +.+++|++++|+..+++++.+|..+
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~ 300 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRG 300 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEecccccc
Confidence 46789999999999999998874 446899999999999 9999999999986445567788653
No 127
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.38 E-value=6.9e-07 Score=76.91 Aligned_cols=82 Identities=13% Similarity=-0.003 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
...|..++.+....+.++..... ...++.+|||+|||+|.++..++.. +..++++||+|+.++ +.+++|..
T Consensus 17 ~~~rn~~~~~~~~~~~~~~~~l~--~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~----- 88 (204)
T TIGR03587 17 YIDRNSRQSLVAAKLAMFARALN--RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP----- 88 (204)
T ss_pred hhhccccHHHHHHHHHHHHHHHH--hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC-----
Confidence 45666666555444444322100 0135678999999999999988765 446899999999999 99988642
Q ss_pred CcEEEEEccHHH
Q 027179 206 DVSSIHTVRVET 217 (227)
Q Consensus 206 ~~v~~i~gDa~~ 217 (227)
+++++++|+.+
T Consensus 89 -~~~~~~~d~~~ 99 (204)
T TIGR03587 89 -NINIIQGSLFD 99 (204)
T ss_pred -CCcEEEeeccC
Confidence 24455555543
No 128
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.37 E-value=9.4e-07 Score=74.08 Aligned_cols=64 Identities=30% Similarity=0.400 Sum_probs=45.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l~~~v~~i~gDa~~~L 219 (227)
..+.+||+||||+|..|+.++.. ++.+|++-|.++ ++ +.++.|++.|+ ...++++..-|+.+.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~ 110 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDEL 110 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-H
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcc
Confidence 57889999999999999999987 778999999999 88 99999999998 5567888888775533
No 129
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.2e-06 Score=74.97 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
+...+.++|.. .++++||++|||||.-+--++... .+|+.||++++-+ +.|++|++..|+.| +.++++|.
T Consensus 60 ~vA~m~~~L~~-------~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG 129 (209)
T COG2518 60 MVARMLQLLEL-------KPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDG 129 (209)
T ss_pred HHHHHHHHhCC-------CCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCc
Confidence 33445566654 478999999999999988777664 3899999999998 99999999999975 99999998
Q ss_pred HHHHHH
Q 027179 216 ETFLER 221 (227)
Q Consensus 216 ~~~L~~ 221 (227)
..-+..
T Consensus 130 ~~G~~~ 135 (209)
T COG2518 130 SKGWPE 135 (209)
T ss_pred ccCCCC
Confidence 654443
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.35 E-value=3.3e-06 Score=78.54 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
+++.++.+++.+++.+... .++.+|||+|||||.+++.++.. +..+|+++|.++.++ +.+++|.... +
T Consensus 93 ~~~~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~----~ 161 (340)
T PLN02490 93 PGHWTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLK----E 161 (340)
T ss_pred cCcchHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhcc----C
Confidence 4556777777666654321 35679999999999999988764 446899999999999 8999886532 4
Q ss_pred EEEEEccHHH
Q 027179 208 SSIHTVRVET 217 (227)
Q Consensus 208 v~~i~gDa~~ 217 (227)
++++++|+.+
T Consensus 162 i~~i~gD~e~ 171 (340)
T PLN02490 162 CKIIEGDAED 171 (340)
T ss_pred CeEEeccHHh
Confidence 6677777754
No 131
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.35 E-value=1.9e-06 Score=76.70 Aligned_cols=59 Identities=17% Similarity=0.028 Sum_probs=47.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.++.+|||+|||+|.++..++.....+|+++|+++.++ +.++++... .++++++++|+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~ 109 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDIL 109 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcc
Confidence 36689999999999999888764334899999999999 899987653 246788888865
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.34 E-value=1.1e-05 Score=71.85 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~ 222 (227)
.+++||++|||+|.++.++++.+ ..+|++||+|+..+ +.+++++...+ + ..+++++.+|+.++++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~ 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC
Confidence 45699999999999999888764 67899999999999 99999875543 2 247899999999988753
No 133
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.34 E-value=1.1e-06 Score=76.29 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=47.4
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------------CCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--------------~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||.|.-++.+|.+|. .|++||+|+.|+ +.+.+ .+++ ..+++++++|++++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 457999999999999999999987 699999999999 77533 1221 23588999999764
No 134
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.34 E-value=1.7e-06 Score=68.52 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=49.7
Q ss_pred eEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.++|+|||+|.+++.++..+.. +|+++|.++.++ +.+++|++.|++. ++++++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCC-cEEEEEeeee
Confidence 4899999999999998877653 899999999999 9999999999986 4888877654
No 135
>PLN02366 spermidine synthase
Probab=98.33 E-value=1.1e-05 Score=73.94 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=73.1
Q ss_pred eEEEEecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeC
Q 027179 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEM 186 (227)
Q Consensus 108 ~L~ii~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEi 186 (227)
.+.++.-.-.|+.|.+....+.-...+..-.+++..+.... ...+++||++|||.|.+..++++. +..+|+.||+
T Consensus 48 ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~----~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEi 123 (308)
T PLN02366 48 DVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCS----IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEI 123 (308)
T ss_pred eEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhh----CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEEC
Confidence 44444444446665554433322222333333433332211 135689999999999999999876 4578999999
Q ss_pred CHHHHHHHHHHHHHHh--CCC-CcEEEEEccHHHHHHHH
Q 027179 187 DPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERA 222 (227)
Q Consensus 187 s~~Al~~~ar~N~~~n--gl~-~~v~~i~gDa~~~L~~~ 222 (227)
|+..+ +.+++.+... +++ .+++++.+|+.++++..
T Consensus 124 D~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~ 161 (308)
T PLN02366 124 DKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA 161 (308)
T ss_pred CHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc
Confidence 99999 9999987653 233 48999999999999764
No 136
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.33 E-value=6.3e-06 Score=75.83 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|||+|||+|.+.+.++..|+.+|++||.++.++ ..++...+..+...++.++.+|+.+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHH
Confidence 56789999999999999998888888899999999887 5544332322222356666666543
No 137
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.32 E-value=5.9e-06 Score=73.73 Aligned_cols=68 Identities=7% Similarity=0.053 Sum_probs=60.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
...++||++|+++|.-++.++.. ..++|+.+|.+++.+ +.|++|++..|+.++|+++.||+.+.|.++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQM 147 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHH
Confidence 35679999999999999988753 235899999999998 999999999999999999999999999886
No 138
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=75.31 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=46.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.++..++.. +..+|++||+++.++ +.++++. .+++++.+|+.++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~ 88 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASW 88 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhcc
Confidence 5679999999999999988865 346899999999999 8988764 2467888887653
No 139
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.3e-06 Score=80.76 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCC-------------------------------
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------- 179 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~------------------------------- 179 (227)
|-.|.++.+++. +... .++..++|..||||+|.||+|..+..
T Consensus 174 pLketLAaAil~-lagw------~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 174 PLKETLAAAILL-LAGW------KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred CchHHHHHHHHH-HcCC------CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 445666655542 2221 24468999999999999999976531
Q ss_pred ---------EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 180 ---------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 180 ---------~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+++|+|+.++ +.|+.|++..|+.+.|+|.++|+.++
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l 293 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDL 293 (381)
T ss_pred HHhhcCccceEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhC
Confidence 377999999999 99999999999999999999998754
No 140
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.31 E-value=1.5e-06 Score=75.79 Aligned_cols=59 Identities=19% Similarity=0.084 Sum_probs=48.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------------CCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl--------------~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||.|.-++.+|.+|. +|++||+++.|+ +.+.+ .+++ ..+++++++|+++.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 457999999999999999999987 699999999999 76532 2222 24689999999865
No 141
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.31 E-value=2.1e-06 Score=75.22 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.++.+|||+|||+|.++..++.+. ..+|+++|+|+.++ +.++++ +++++++|+.++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~ 84 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDW 84 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhC
Confidence 356899999999999999988762 35899999999999 888753 356788887654
No 142
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.30 E-value=1.9e-06 Score=75.03 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
+..+|||+|||+|.++..++..| .+|+++|+|+.++ +.++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l-~~a~~~~ 84 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPML-AQARQKD 84 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHH-HHHHhhC
Confidence 46789999999999999887776 4899999999999 8988874
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.7e-06 Score=74.84 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas-~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.++.+|+|.|.|||+++..++. .| .++|+.+|+.++-+ +.|++|++.+++.|++++..+|+.+...
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc
Confidence 5889999999999999999885 23 47999999999999 9999999999999889999999877543
No 144
>PRK04148 hypothetical protein; Provisional
Probab=98.26 E-value=3.2e-06 Score=69.30 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=44.3
Q ss_pred CCCeEEEeccCCCH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~-isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+++|+|||+|. ++..++..|. .|+++|+|+.++ +.++++ + ++++++|+++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~ 69 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFN 69 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCC
Confidence 45789999999995 9998887785 899999999998 777665 2 4688888875
No 145
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.26 E-value=4.7e-06 Score=76.27 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i 211 (227)
+.+.+++++.+.. .++..++|++||.|..+.+++... ..+|+|+|.|++|+ +.+++++.. .++++++
T Consensus 5 pVll~Evl~~L~~-------~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i 73 (296)
T PRK00050 5 PVLLDEVVDALAI-------KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLV 73 (296)
T ss_pred cccHHHHHHhhCC-------CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEE
Confidence 4455666666653 356799999999999999999863 46899999999999 999988755 3589999
Q ss_pred EccHHHHHHHHh
Q 027179 212 TVRVETFLERAE 223 (227)
Q Consensus 212 ~gDa~~~L~~~~ 223 (227)
++|..++...+.
T Consensus 74 ~~~f~~l~~~l~ 85 (296)
T PRK00050 74 HGNFSNLKEVLA 85 (296)
T ss_pred eCCHHHHHHHHH
Confidence 999988766553
No 146
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.26 E-value=1.3e-06 Score=63.01 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=41.4
Q ss_pred EEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 160 LDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
||+|||+|..+..++..+..+|+++|+++.++ +.++++....+ +.++++|+.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHh
Confidence 89999999999999988667999999999999 88888775443 4466666543
No 147
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.24 E-value=5.6e-06 Score=58.68 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=49.5
Q ss_pred eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
+++|+|||+|.++..++.....+++++|.++.++ +.++++.+.+.. .+++++++|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhcc
Confidence 4899999999999988875567999999999998 888865544443 468999999887653
No 148
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.24 E-value=1.3e-06 Score=78.93 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=41.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n 202 (227)
..+.+|||+|||+|.+++.+|+.|+ +|++||.++.++ +.|++....+
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~d 134 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMD 134 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcC
Confidence 3467899999999999999999986 799999999999 9999985443
No 149
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=7.6e-07 Score=77.59 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=53.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
..+++|||+|+|+|..+|+++..|++.|++.|++|... ..++-|++.|++. +.++..|.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~ 136 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADL 136 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccc
Confidence 57899999999999999999999999999999999998 9999999999973 66766664
No 150
>PRK03612 spermidine synthase; Provisional
Probab=98.21 E-value=3.1e-06 Score=82.38 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHh-----CCC-CcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT-----GFL-DVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~n-----gl~-~~v~~i~gDa~~~L~~~ 222 (227)
++++|||+|||+|.++.++++.+. .+|++||+|++.+ +.+++|.... .++ .+++++.+|+.++++..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence 567999999999999999888754 7999999999999 9999964321 232 47999999999998754
No 151
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.19 E-value=9.3e-06 Score=68.05 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
++.+|||+|||+|.++..++..+. .+++++|+++.++ +.+++|.. ..++++++.+|+.+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEAL 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcC
Confidence 578999999999999999887654 4899999999998 89998875 234678888887653
No 152
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.19 E-value=1.3e-05 Score=68.81 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=53.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.++.+|||+|||+|.+++.+++.++ +|+++|.++.++ +.+++|+...+. +++++.+|+.+..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 4677999999999999998888775 799999999999 999999887776 4788888887664
No 153
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=9.6e-06 Score=68.84 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=53.4
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
.+.+|||+|||+|.++..++..++ +|+++|.++.++ +.+++|+..++.. +++++++|+.++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~ 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLA 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhh
Confidence 477999999999999998887765 699999999999 9999999888764 5788888887654
No 154
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.7e-05 Score=72.28 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=79.7
Q ss_pred EEecccCCeeecCCCCC---CCCCCHHHHHHH---------------HHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHH
Q 027179 111 VLGGKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172 (227)
Q Consensus 111 ii~G~~~Gr~L~v~~g~---~~RPtte~v~ea---------------lf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~ 172 (227)
-|.|+++|.++....|. ..|||.|.-..+ ++.+|.. .++.+|++-|+|||+++.+
T Consensus 50 ~iIGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i-------~PGsvV~EsGTGSGSlSha 122 (314)
T KOG2915|consen 50 DIIGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEI-------RPGSVVLESGTGSGSLSHA 122 (314)
T ss_pred heecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcC-------CCCCEEEecCCCcchHHHH
Confidence 35689999999998884 488999864433 2334432 5789999999999999998
Q ss_pred HHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 173 AISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 173 aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
+++. .-++++..|....-. +.+++-.+..++.+++++++-|+.
T Consensus 123 iaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 123 IARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred HHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecc
Confidence 8764 237899999999888 899999999999999999988874
No 155
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.17 E-value=4e-06 Score=72.76 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=54.4
Q ss_pred CeEEEeccCCCHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~-~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+|||||||.|.+=..+++.|.. ..++||.++.|+ ++|+.-+++++++|.|++.+.|+.+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC
Confidence 39999999999999999988754 499999999999 99888889999998899999998763
No 156
>PRK05785 hypothetical protein; Provisional
Probab=98.15 E-value=8.4e-06 Score=71.08 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
.+.+|||+|||||.++..++.....+|++||+|++++ +.+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~ 93 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVA 93 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhc
Confidence 3679999999999999998876335899999999999 888764
No 157
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.15 E-value=1.2e-05 Score=75.72 Aligned_cols=59 Identities=17% Similarity=0.029 Sum_probs=47.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|||+|.+++.++.....+|++||+|++++ +.++++++ ++ .+++..+|+.+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~v~~~~~D~~~ 224 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--PVEIRLQDYRD 224 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--eEEEEECchhh
Confidence 36789999999999999998875324899999999999 99999884 33 36666666543
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.15 E-value=2.1e-05 Score=69.29 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=60.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-ccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~-gDa~~~L~~ 221 (227)
...+++|++|++.|.-++.+|.. . ..+++.+|.+++.+ +.|++|+++.|+.++++++. +|+.+.+.+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 46789999999999999998863 2 56899999999999 99999999999999999999 699998876
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=8.6e-06 Score=71.88 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
.++.+|||+|||||.|+..++..|+.+|++||.++..+....++|.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5778999999999999999999999999999999977623355543
No 160
>PLN03075 nicotianamine synthase; Provisional
Probab=98.14 E-value=5.8e-06 Score=75.73 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCeEEEeccCCCHH-HHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEccHHHHH
Q 027179 155 RPGRWLDLYSGTGSV-GIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 155 ~~~~VLDLgsGTG~i-sI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~-ngl~~~v~~i~gDa~~~L 219 (227)
.+++|+|+|||.|.+ ++-++. ....+++++|+|++++ +.|+++++. .++.++++|+++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhcc
Confidence 678999999997755 443332 2346899999999999 999999965 888888999999998754
No 161
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1e-05 Score=72.90 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+++.||++|+|.|+++.+++.+++ +|++||+|+..+ +.+++... ..++++++++|+.++
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCchhcC
Confidence 3578999999999999999998875 699999999998 78776554 335799999999763
No 162
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.13 E-value=9.4e-06 Score=68.38 Aligned_cols=54 Identities=17% Similarity=0.032 Sum_probs=41.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.++..++..+...+++||++++++ +.++++ +++++++|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~ 66 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDE 66 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhh
Confidence 4579999999999999887765445789999999998 776542 24567777655
No 163
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.6e-05 Score=68.77 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
....++++|||||.++-.+++. +.....+.|+||+|+ +..++-++.|+. ++++++.|+.+.|+.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~~ 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLRN 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhcc
Confidence 3678999999999999988874 445789999999999 999999999997 489999999988875
No 164
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.11 E-value=1.1e-05 Score=69.75 Aligned_cols=59 Identities=24% Similarity=0.125 Sum_probs=45.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.++.+|||||||.|.+--.+......++++||++++.+ ..+. .+| +.++++|+.+-|..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-~~cv----~rG----v~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-AACV----ARG----VSVIQGDLDEGLAD 70 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-HHHH----HcC----CCEEECCHHHhHhh
Confidence 36789999999999998776653334799999999987 4433 244 45899999887764
No 165
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.10 E-value=1.8e-05 Score=66.72 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+.+|||+|||+|.++..++..+ ..+++++|+++.++ +.++++.. .+++++.+|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhh
Confidence 45789999999999999988765 35699999999998 78776653 246677777654
No 166
>PRK06202 hypothetical protein; Provisional
Probab=98.05 E-value=6.8e-06 Score=70.96 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=39.1
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~G-a~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
.+.+|||+|||+|.++..++. .| ..+|++||+++.++ +.++++...++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~ 112 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG 112 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC
Confidence 567999999999999988764 23 24899999999999 99998865444
No 167
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.04 E-value=2.3e-05 Score=67.26 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
....+||+|||.|.+.+++|.. ....++|||+....+ ..+.+.+...++. |+.++++|+..++..+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~ 83 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLK-NVRFLRGDARELLRRL 83 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTS-SEEEEES-CTTHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhccc-ceEEEEccHHHHHhhc
Confidence 3448999999999999999875 457899999999999 9999999999986 6999999999888754
No 168
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=98.03 E-value=1.4e-06 Score=80.20 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=53.8
Q ss_pred CCCCeEEEeccCCCHHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI-~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
..+..|+|||+|-|.|.+ .+.+.||+.|+|.|.||+++ +.+++|++.|++.++..++.+|-
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhccc
Confidence 466899999999999999 55678999999999999999 99999999999877776777664
No 169
>PRK06922 hypothetical protein; Provisional
Probab=98.02 E-value=1.9e-05 Score=79.12 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=50.2
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++.+|||+|||+|.++..++.. ...+|+++|+++.++ +.++++....+. +++++++|+.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~d 478 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAIN 478 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHh
Confidence 5679999999999999887764 346899999999999 999998876653 57889999865
No 170
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=1.3e-05 Score=71.09 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g 213 (227)
+.+.+.+++.+.. .++..|||+|+|+|.++-+++..+ .+|++||+|+..+ +.+++... ...+++++++
T Consensus 16 ~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~~ 83 (262)
T PF00398_consen 16 PNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEES
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeeec
Confidence 4566667676653 367899999999999999998887 7999999999998 88887554 3357999999
Q ss_pred cHHHH
Q 027179 214 RVETF 218 (227)
Q Consensus 214 Da~~~ 218 (227)
|+.++
T Consensus 84 D~l~~ 88 (262)
T PF00398_consen 84 DFLKW 88 (262)
T ss_dssp -TTTS
T ss_pred chhcc
Confidence 98763
No 171
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.99 E-value=2.2e-05 Score=74.74 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
++.+|||+|||+|.++..++..+ .+|++||+++.++ +.+++ .++...+++++++|+.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~ 93 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVT 93 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEeccc
Confidence 46799999999999999988765 5899999999998 65443 3443346888888874
No 172
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.98 E-value=1.7e-05 Score=71.19 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHH
Q 027179 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--------Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
+.-.|+..++..+.+++.. ..+.+|+|.+||||.|-+++... ...+++|+|+++.++ .+++-|+
T Consensus 26 G~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl 97 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNL 97 (311)
T ss_dssp GGC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHH
T ss_pred ceeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhh
Confidence 5567888888888888753 35678999999999999988752 446899999999999 9999999
Q ss_pred HHhCCCCc-EEEEEccHHH
Q 027179 200 EWTGFLDV-SSIHTVRVET 217 (227)
Q Consensus 200 ~~ngl~~~-v~~i~gDa~~ 217 (227)
..++.... ..+.++|.+.
T Consensus 98 ~l~~~~~~~~~i~~~d~l~ 116 (311)
T PF02384_consen 98 LLHGIDNSNINIIQGDSLE 116 (311)
T ss_dssp HHTTHHCBGCEEEES-TTT
T ss_pred hhhcccccccccccccccc
Confidence 88876532 4688888753
No 173
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.98 E-value=4.7e-06 Score=79.64 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=60.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~-v~~i~gDa~~~L~~ 221 (227)
..+..|.|+|||.|-+++.++..++ +|++-|.+++++ ++++.|+..|.++.. ++++..|+.++|++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhhc
Confidence 3678999999999999999999885 899999999999 999999999999865 99999999999963
No 174
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.98 E-value=3.7e-05 Score=68.30 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=43.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G----a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+.+|||+|||+|.++..++... ..+|+++|+|+.++ +.++++. .++.++.+|+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeeccc
Confidence 45689999999999998877532 23799999999999 8887652 246777777654
No 175
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.97 E-value=2.7e-05 Score=70.50 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=53.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga------~~V~aVEis~~Al~~~ar~N~~~ngl~~~--v~~i~gDa~~ 217 (227)
..+.++||++||||-++.-++.. +. .+|+.+|+|++++ +.+++-+++.++.+. +.++++|+++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 46789999999999999988752 33 6899999999999 999999988777644 8999999975
No 176
>PTZ00146 fibrillarin; Provisional
Probab=97.95 E-value=2.9e-05 Score=71.12 Aligned_cols=79 Identities=13% Similarity=-0.052 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v 208 (227)
|-...+..+++.-+.... ..++.+|||||||+|.++..++.. + ...|++||+++++. +.+.+-++.. .++
T Consensus 112 p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~NI 183 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---PNI 183 (293)
T ss_pred CcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---CCC
Confidence 777788877765554321 146789999999999999999875 3 35899999998865 4444433221 357
Q ss_pred EEEEccHHH
Q 027179 209 SIHTVRVET 217 (227)
Q Consensus 209 ~~i~gDa~~ 217 (227)
.++.+|+.+
T Consensus 184 ~~I~~Da~~ 192 (293)
T PTZ00146 184 VPIIEDARY 192 (293)
T ss_pred EEEECCccC
Confidence 788888754
No 177
>PLN02823 spermine synthase
Probab=97.94 E-value=0.00017 Score=67.00 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=57.1
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~ 222 (227)
..++||-+|+|.|.++.++++. +..+|++||+|+..+ +++++++..++ + +.+++++.+|+.++++..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC
Confidence 4578999999999999998874 567999999999999 99999986543 2 358999999999999653
No 178
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.91 E-value=3.9e-05 Score=66.67 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=53.5
Q ss_pred EEEeccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 159 WLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 159 VLDLgsGTG~isI~aas~Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
|+|+||--|.+++.++.+|. .+|+++|+++..+ +.|++|++.+++.+++++..+|-++.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~ 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLKPG 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--GG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccCCC
Confidence 68999999999999998874 6899999999999 999999999999999999999988877643
No 179
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.89 E-value=5.2e-05 Score=71.50 Aligned_cols=90 Identities=23% Similarity=0.346 Sum_probs=64.9
Q ss_pred CCCCCCCCHHHHHHHHH------HHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Q 027179 125 KGMDVRPMMEVVKGAAF------DILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 125 ~g~~~RPtte~v~ealf------~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar 196 (227)
...+++|.++.-+...+ +....+. .++-++||..||||.=||-.+.. +..+|++-|+|++|+ +.++
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~ 91 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIK 91 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHH
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHH
Confidence 44589999976554422 2222210 13458999999999999999875 668999999999999 9999
Q ss_pred HHHHHhCCCC-cEEEEEccHHHHHH
Q 027179 197 PNLEWTGFLD-VSSIHTVRVETFLE 220 (227)
Q Consensus 197 ~N~~~ngl~~-~v~~i~gDa~~~L~ 220 (227)
+|++.|++.+ ++++.+.|+-..|.
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHC
T ss_pred HhHhhccccCceEEEehhhHHHHhh
Confidence 9999999987 79999999988773
No 180
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.88 E-value=6.9e-06 Score=73.60 Aligned_cols=69 Identities=28% Similarity=0.216 Sum_probs=58.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-CCcEEEEEccHHHHHHHHh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-~~~v~~i~gDa~~~L~~~~ 223 (227)
.++.+|||.|.|-|..+|+++.+||.+|+.||.||..+ +++.-|==.-++ +-+++++.||+.++++.+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~ 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDFD 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcCC
Confidence 46899999999999999999999999999999999998 888877422222 2358999999999988754
No 181
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.87 E-value=5.2e-05 Score=63.28 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
+-+.+..+.+.++.+.. .+++.|||.|||||+.+++|...| .+.+++|+++..+ +.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t--------~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~-~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST--------NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYC-EIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred eecCCHHHHHHHHHhhh--------ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHH-HHhcC
Confidence 44455667777776654 368899999999999999988776 4799999999998 88864
No 182
>PRK01581 speE spermidine synthase; Validated
Probab=97.81 E-value=8.2e-05 Score=70.22 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=54.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-----HhCC-CCcEEEEEccHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLE-----WTGF-LDVSSIHTVRVETFLERA 222 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~-----~ngl-~~~v~~i~gDa~~~L~~~ 222 (227)
...++||++|||+|....++++. +..+|++||+|++++ ++|+++-. ...+ +.+++++.+|+.+++...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 35679999999999988888875 457999999999999 99996321 1122 358999999999998764
No 183
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.79 E-value=7.3e-05 Score=65.01 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHH-------h
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEW-------T 202 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~-------n 202 (227)
.........++..+.. .+++.++|||||.|.+-+.++. .++.++++||+.+... +.++.+.+. .
T Consensus 25 Ei~~~~~~~il~~~~l-------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~ 96 (205)
T PF08123_consen 25 EISPEFVSKILDELNL-------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHY 96 (205)
T ss_dssp GCHHHHHHHHHHHTT---------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHhCC-------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHh
Confidence 3344445556665543 3678999999999999887765 4888899999999987 777765543 2
Q ss_pred CC-CCcEEEEEccHHH
Q 027179 203 GF-LDVSSIHTVRVET 217 (227)
Q Consensus 203 gl-~~~v~~i~gDa~~ 217 (227)
|. ..+++++++|..+
T Consensus 97 g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 97 GKRPGKVELIHGDFLD 112 (205)
T ss_dssp TB---EEEEECS-TTT
T ss_pred hcccccceeeccCccc
Confidence 33 2468899999764
No 184
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.78 E-value=6.9e-05 Score=59.39 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=35.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ 194 (227)
.++.+|||+|||+|.++..++..|. +|+++|+++.++ +.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh
Confidence 4678999999999999999988887 899999999998 66
No 185
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.76 E-value=9.2e-05 Score=67.59 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~g 213 (227)
..+...+.+.... .+.+.||++|-|||.++..++..|+ +|+|+|+|+..+ ....+-.+-.-.+++.+++.|
T Consensus 44 p~v~~~I~~ka~~-------k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~g 114 (315)
T KOG0820|consen 44 PLVIDQIVEKADL-------KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHG 114 (315)
T ss_pred HHHHHHHHhccCC-------CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEec
Confidence 3455555554443 4678999999999999999887765 799999999998 666665554444578999999
Q ss_pred cHHH
Q 027179 214 RVET 217 (227)
Q Consensus 214 Da~~ 217 (227)
|+++
T Consensus 115 D~lK 118 (315)
T KOG0820|consen 115 DFLK 118 (315)
T ss_pred cccc
Confidence 9864
No 186
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=8.1e-05 Score=72.18 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHH
Q 027179 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G---------a~~V~aVEis~~Al~~~ar~N 198 (227)
+.-+|+..+++.+.+++....+........+|||.|||||.|.++++.+. ...++++|+++.++ ..++.|
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~ 82 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKL 82 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHH
Confidence 45577888888888877432110000134689999999999999887532 14789999999999 999999
Q ss_pred HHHhCCCCcEEEEEccHH
Q 027179 199 LEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 199 ~~~ngl~~~v~~i~gDa~ 216 (227)
+..++. ..+.+++.|..
T Consensus 83 l~~~~~-~~~~i~~~d~l 99 (524)
T TIGR02987 83 LGEFAL-LEINVINFNSL 99 (524)
T ss_pred HhhcCC-CCceeeecccc
Confidence 988762 12456655543
No 187
>PHA01634 hypothetical protein
Probab=97.75 E-value=7.2e-05 Score=61.68 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=49.5
Q ss_pred CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~ 207 (227)
+..+++|+|+|++.|.-+|.++.+||++|+++|.++... +..++|++.|.+-|+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK 79 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDK 79 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeec
Confidence 368899999999999999999999999999999999998 999999999977543
No 188
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.74 E-value=0.00011 Score=59.38 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas-----~Ga~~V~aVEis~~Al~~~ar~N~~~ng--l~~~v~~i~gDa~~ 217 (227)
.+...|+|+|||-|.+|..++. ....+|++||.++..+ +.+.+..+..+ +..+.+++.++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhh
Confidence 3567999999999999999887 4446899999999998 89999888887 54456777766543
No 189
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.68 E-value=6.1e-05 Score=65.01 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDP 188 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~ 188 (227)
.++.+|||||||||.++..++.+ +. .+|++||+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 35679999999999999988875 32 5899999987
No 190
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.00037 Score=62.02 Aligned_cols=69 Identities=16% Similarity=0.051 Sum_probs=60.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~ 223 (227)
...+++||+|..||.-++..|.. --++|+++|+|+.+. ++..+=.+..|+.++++++++++.+.|+++.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELL 142 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHH
Confidence 35689999999999988887753 235899999999999 9999999999999999999999999998764
No 191
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.64 E-value=7.5e-05 Score=65.04 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.-.++||+|||.|.++..++.+ +.+++++|+++.|+ +.+++.... .. +|+++++|+.++..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~~-~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--LP-HVEWIQADVPEFWP 103 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT---S-SEEEEES-TTT---
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--CC-CeEEEECcCCCCCC
Confidence 3468999999999999998877 57899999999999 999987653 33 69999999987643
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.63 E-value=0.00026 Score=68.58 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.++.+|||+|||.|.=+..++.. +.+.|+++|+++.-+ +.+++|+++.|+. ++.+.+.|+.++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~-nv~v~~~D~~~~ 176 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVS-NVALTHFDGRVF 176 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCchhhh
Confidence 46789999999999999998864 346899999999998 9999999999996 589999998764
No 193
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.63 E-value=0.00017 Score=64.40 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=46.2
Q ss_pred cCCCCCCCC-C-CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCH----HHHHHHHcC------CCEEEEEeCCHH
Q 027179 122 LSPKGMDVR-P-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPW 189 (227)
Q Consensus 122 ~v~~g~~~R-P-tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~----isI~aas~G------a~~V~aVEis~~ 189 (227)
.++...+.| | .-+.+.+.++..+..... ...+.+|||+|||||- +++.++..+ ..+|+|+|+|+.
T Consensus 67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~~~---~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 67 TTNETRFFRESKHFEALEEKVLPLLIASRR---HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred hcCCCcccCCcHHHHHHHHHHhHHHHHhcC---CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 334444555 2 234455555554422110 1234699999999995 566555431 248999999999
Q ss_pred HHHHHHHHHH
Q 027179 190 VVSNVLIPNL 199 (227)
Q Consensus 190 Al~~~ar~N~ 199 (227)
++ +.|++++
T Consensus 144 ~L-~~Ar~~~ 152 (264)
T smart00138 144 AL-EKARAGI 152 (264)
T ss_pred HH-HHHHcCC
Confidence 99 9999864
No 194
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00018 Score=67.73 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
.++.|.++.-+......++.... ....+|+|-+||||.=||-.+.. +..+|++=|+||.|+ +++++|++.|...
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~----~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~ 102 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGK----LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGE 102 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhc----cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCcc
Confidence 47888887655544333333210 12679999999999999998875 555899999999999 9999999999554
Q ss_pred CcEEEEEccHHHHHHHHh
Q 027179 206 DVSSIHTVRVETFLERAE 223 (227)
Q Consensus 206 ~~v~~i~gDa~~~L~~~~ 223 (227)
+..+++.|+..+|.+..
T Consensus 103 -~~~v~n~DAN~lm~~~~ 119 (380)
T COG1867 103 -DAEVINKDANALLHELH 119 (380)
T ss_pred -cceeecchHHHHHHhcC
Confidence 46788899998887644
No 195
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.61 E-value=4.3e-06 Score=62.45 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=36.0
Q ss_pred EEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 160 LDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
||+|||+|.+...++.. ...+++++|+|+.++ +.+++.+...+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~ 46 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGND 46 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCc
Confidence 79999999999998875 446899999999999 8999988887753
No 196
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.59 E-value=0.00019 Score=63.47 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=48.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH------------HhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE------------WTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~------------~ngl~~~v~~i~gDa~~~ 218 (227)
++.+||+.|||.|.=.+.+|..|. +|++||+|+.|+ +.+.+... ... ..+++++++|+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l 115 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNL 115 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCC
Confidence 457999999999999999999997 599999999999 77644110 001 23689999999975
No 197
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.57 E-value=0.0001 Score=65.49 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 127 ~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
+..||-.|.+.. +.. ....+|+|||||+|.-+--++.+ +...++++|.|++++ +.|++. +.
T Consensus 14 eRtRPa~dLla~-----Vp~-------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~r-----lp 75 (257)
T COG4106 14 ERTRPARDLLAR-----VPL-------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQR-----LP 75 (257)
T ss_pred hccCcHHHHHhh-----CCc-------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHh-----CC
Confidence 356777774332 221 24568999999999988877776 556899999999999 776532 22
Q ss_pred CcEEEEEccHHHHH
Q 027179 206 DVSSIHTVRVETFL 219 (227)
Q Consensus 206 ~~v~~i~gDa~~~L 219 (227)
+.+|.++|+.++-
T Consensus 76 -~~~f~~aDl~~w~ 88 (257)
T COG4106 76 -DATFEEADLRTWK 88 (257)
T ss_pred -CCceecccHhhcC
Confidence 4788888887653
No 198
>PRK11524 putative methyltransferase; Provisional
Probab=97.54 E-value=0.00035 Score=62.82 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ 201 (227)
..+.+.++.... .+++.|||.|+|||+.+++|...| .+.+++|++++.+ +.+++-++.
T Consensus 195 ~~L~erlI~~~S--------~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~-~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS--------NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYI-KMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC--------CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHH-HHHHHHHHh
Confidence 455555554443 478899999999999999887776 4799999999998 999988753
No 199
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00043 Score=61.19 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=57.3
Q ss_pred CeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
..+||+|||.|.+-+++|.. .....+|||+....+ ..+.+-+...++. |+.++++|+.+.++.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhc
Confidence 58999999999999999986 446799999999998 8999999999986 6999999999998764
No 200
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.48 E-value=0.00032 Score=64.77 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=35.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
..+++|||+|||.|..+..++.+|++.|+++|-+..-.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~ 151 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY 151 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH
Confidence 68999999999999999999999999999999988765
No 201
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.46 E-value=0.00017 Score=63.07 Aligned_cols=63 Identities=17% Similarity=0.020 Sum_probs=47.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHHhCC----------CCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTGF----------LDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~a-r~N~~~ngl----------~~~v~~i~gDa~~~ 218 (227)
..+.+||+.|||.|.-.+.++.+|. +|++||+++.|+ +.+ ++|.....+ .++|+++++|.|+.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 3567999999999999999999986 899999999999 776 333321110 23689999999873
No 202
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00019 Score=69.33 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=52.5
Q ss_pred CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD 214 (227)
-.|||+|+|||-+++-|+..|+..|+|+|.-..+. +.+++-.++||..++|++|+..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeeccc
Confidence 46999999999999998888999999999999999 9999999999999999988643
No 203
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00022 Score=60.36 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
|-+-.-++.+++.+.. .+..+.+|||+|.|.+-++++..|....++||.|++.+ ...+-.+-+.|+....+|
T Consensus 55 pAtteQv~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k~trf 126 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAKSTRF 126 (199)
T ss_pred CccHHHHHHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhcccchhh
Confidence 4344445566666653 24468999999999999999888877899999999998 888888888887666677
Q ss_pred EEccHHHH
Q 027179 211 HTVRVETF 218 (227)
Q Consensus 211 i~gDa~~~ 218 (227)
.+-|++++
T Consensus 127 ~RkdlwK~ 134 (199)
T KOG4058|consen 127 RRKDLWKV 134 (199)
T ss_pred hhhhhhhc
Confidence 77766553
No 204
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.42 E-value=0.00029 Score=62.17 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=44.1
Q ss_pred eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
+++|||||.|.+++.+-..|...|+++|+++.|+ +.-+.|.. .++.+|+.+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~ 53 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEI 53 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGC
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccc
Confidence 6999999999999998888888899999999999 99998874 5677777653
No 205
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.00022 Score=64.31 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=43.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT 202 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~n 202 (227)
.++..+||+||-+|.+++.+++. |+..|.+||||+..+ +.|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence 46789999999999999999984 889999999999999 9999998754
No 206
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.37 E-value=0.0005 Score=63.23 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=50.1
Q ss_pred ccCCeee-cCCCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHH-HHHHHHcCCCEEEEEeCCHH
Q 027179 115 KARRKKL-LSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAISRGCSEVHFVEMDPW 189 (227)
Q Consensus 115 ~~~Gr~L-~v~~g~~~RPtte---~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~i-sI~aas~Ga~~V~aVEis~~ 189 (227)
...|..+ .+|++ ..-|+.+ .-...+.+.|..... .....-++||+|+|.-+| .|-.++...-+++|.|+|+.
T Consensus 61 ~dfgl~~wdiP~~-~LcP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~ 137 (299)
T PF05971_consen 61 HDFGLDVWDIPEG-RLCPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK 137 (299)
T ss_dssp HHH--------TT-S----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred HhcCCccccCCCC-CcCCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence 3456665 77776 3334444 222223333322110 001245899999998876 56555432358999999999
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEEc
Q 027179 190 VVSNVLIPNLEWT-GFLDVSSIHTV 213 (227)
Q Consensus 190 Al~~~ar~N~~~n-gl~~~v~~i~g 213 (227)
++ +.|++|++.| +++++|+++..
T Consensus 138 sl-~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 138 SL-ESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp HH-HHHHHHHHHT-T-TTTEEEEE-
T ss_pred HH-HHHHHHHHhccccccceEEEEc
Confidence 99 9999999999 99999998865
No 207
>PRK13699 putative methylase; Provisional
Probab=97.37 E-value=0.00084 Score=58.93 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
+..+.+.++.... .+++.|||.|||||+.++++...|- +.+++|++++.+ +.+.+.++...
T Consensus 149 P~~l~~~~i~~~s--------~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~~ 209 (227)
T PRK13699 149 PVTSLQPLIESFT--------HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAVQ 209 (227)
T ss_pred cHHHHHHHHHHhC--------CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHHH
Confidence 3445555544333 3678999999999999998877764 799999999998 88888776543
No 208
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.31 E-value=0.00034 Score=58.60 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPW 189 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~ 189 (227)
.++.+|||+|||||.++..++.+ +..+|++||+++.
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 46789999999999999988764 3458999999984
No 209
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.30 E-value=0.00043 Score=62.13 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=38.1
Q ss_pred eEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
+|+|||||.|.+++.+...|...|+++|+++.|+ +..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCC
Confidence 6899999999999988888888899999999999 99998863
No 210
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00047 Score=60.98 Aligned_cols=87 Identities=20% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCC--EEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCS--EVHFVEMDPWVVSNVLIPNLEWTGF 204 (227)
Q Consensus 128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~--~V~aVEis~~Al~~~ar~N~~~ngl 204 (227)
..+-....+-..+|++|.... .++..+||+|+|||.++-.++. -|+. .+++||.-++.+ +..++|+++.--
T Consensus 60 n~~iSAp~mha~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~ 133 (237)
T KOG1661|consen 60 NLTISAPHMHATALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDIT 133 (237)
T ss_pred ceEEcchHHHHHHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhcc
Confidence 344445556667788887543 5789999999999999987773 2432 349999999999 999999987651
Q ss_pred ---------CCcEEEEEccHHHHHH
Q 027179 205 ---------LDVSSIHTVRVETFLE 220 (227)
Q Consensus 205 ---------~~~v~~i~gDa~~~L~ 220 (227)
..++.++.+|...-..
T Consensus 134 ~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 134 TSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred CchhhhhhccCceEEEeCCccccCC
Confidence 1246777888765433
No 211
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.22 E-value=0.003 Score=57.11 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.++..|||+||+-|.=+..++.. +.+.|+++|+++.-+ ..+++|+++.|+. ++.+++.|+......
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~-~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVF-NVIVINADARKLDPK 151 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-S-SEEEEESHHHHHHHH
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCc-eEEEEeecccccccc
Confidence 46789999999999999888763 357899999999999 9999999999996 588888999887554
No 212
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.10 E-value=0.00039 Score=62.45 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
=.++||||||||-.|.++-.+ +.+.++||+|..++ +.+.+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~e 165 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHE 165 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHh
Confidence 368999999999999986444 56899999999998 76654
No 213
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.07 E-value=0.0042 Score=57.25 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..-+|||+.||.|.--+.++.. . ..+|...|.++..+ +..++-++..|+.+.++|.++|+|+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCH
Confidence 4569999999999999888753 2 36899999999999 99999999999998779999999985
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.03 E-value=0.0052 Score=54.52 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCC---CCcEEEEEccHHHHHHHHhh
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQ 224 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl---~~~v~~i~gDa~~~L~~~~~ 224 (227)
+.++||=||-|.|...-++++.. ..+|++||+|+..+ +.+++-+..... +.|++++.+|+..++++..+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence 57899999999999999988753 57999999999999 999997765432 35899999999999987543
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0041 Score=54.72 Aligned_cols=86 Identities=24% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCC--CCeEEEeccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~--~~~VLDLgsGTG~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
+|-..++....+++-+..... .+ +.+|+|+|||.|-=||.+| .....+|+.||.+..-+ ...++=.+..+++
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~ 117 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLE 117 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCC
Confidence 444456666667666543211 22 5899999999999999877 34445699999999998 8999999999996
Q ss_pred CcEEEEEccHHHHHH
Q 027179 206 DVSSIHTVRVETFLE 220 (227)
Q Consensus 206 ~~v~~i~gDa~~~L~ 220 (227)
|++++++.++++-.
T Consensus 118 -nv~i~~~RaE~~~~ 131 (215)
T COG0357 118 -NVEIVHGRAEEFGQ 131 (215)
T ss_pred -CeEEehhhHhhccc
Confidence 59999999988654
No 216
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.96 E-value=0.0077 Score=55.57 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~ 212 (227)
+.+.+.+++.|.. .++..++|.=+|-|.=+.+++.. +..+|+++|.|+.|+ +.++++++.+ .+++++++
T Consensus 6 pVll~Evl~~L~~-------~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~ 75 (305)
T TIGR00006 6 SVLLDEVVEGLNI-------KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIH 75 (305)
T ss_pred chhHHHHHHhcCc-------CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEe
Confidence 4556667677654 36679999999999999999875 347899999999999 9999988755 35899999
Q ss_pred ccHHHHHHHHh
Q 027179 213 VRVETFLERAE 223 (227)
Q Consensus 213 gDa~~~L~~~~ 223 (227)
++..++.+.++
T Consensus 76 ~nF~~l~~~l~ 86 (305)
T TIGR00006 76 DNFANFFEHLD 86 (305)
T ss_pred CCHHHHHHHHH
Confidence 99887766553
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.91 E-value=0.0042 Score=53.46 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~ 206 (227)
.-|+.+.+.+.+.+.+.. ..+.-||++|.|||.|+-+++++|. ..++++|.|++=+ ..+.+ ..+
T Consensus 29 I~PsSs~lA~~M~s~I~p-------esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~------~~p 94 (194)
T COG3963 29 ILPSSSILARKMASVIDP-------ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQ------LYP 94 (194)
T ss_pred ecCCcHHHHHHHHhccCc-------ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHH------hCC
Confidence 558888888777665543 2566899999999999999999874 5799999999877 44332 223
Q ss_pred cEEEEEccHHHHH
Q 027179 207 VSSIHTVRVETFL 219 (227)
Q Consensus 207 ~v~~i~gDa~~~L 219 (227)
.+.+++||+++.=
T Consensus 95 ~~~ii~gda~~l~ 107 (194)
T COG3963 95 GVNIINGDAFDLR 107 (194)
T ss_pred CccccccchhhHH
Confidence 4679999998743
No 218
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.85 E-value=0.0021 Score=57.48 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
...-+||+|||||..|-.+...| -..++||+|+.++ +.+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML-~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSML-EQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHH-HHHHH
Confidence 46789999999999988776667 5799999999999 88886
No 219
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.84 E-value=0.0051 Score=57.12 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=43.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC---------CCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng---------l~~~v~~i~gDa~~ 217 (227)
++.+|||||||=|.=-.-+...+..+++++|++..++ +.|++-.+... ..=...++.+|.+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccchhheecccccc
Confidence 6789999999988865556667888999999999999 88887662211 11135788888763
No 220
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0057 Score=57.16 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~G---a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|||+|++-|.=+..++... ...|+++|+++.-+ +.+++|+++.|+.+ +.+++.|...
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~ 219 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARR 219 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEeccccc
Confidence 578999999999999988887642 24579999999999 99999999999975 8888888654
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.74 E-value=0.0094 Score=51.04 Aligned_cols=80 Identities=24% Similarity=0.108 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~ 212 (227)
+.+...+++-+....- ....+.+++|+|||-|-=||.++- +...+|+.||.+..-+ ...+.=+...++. |+++++
T Consensus 29 ~~~~~Hi~DSL~~~~~--~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~-nv~v~~ 104 (184)
T PF02527_consen 29 EIWERHILDSLALLPF--LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLS-NVEVIN 104 (184)
T ss_dssp HHHHHHHHHHHGGGGC--S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-S-SEEEEE
T ss_pred HHHHHHHHHHHHhhhh--hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCC-CEEEEE
Confidence 4444566665543210 011223799999999999998764 4567899999999998 8999999999997 599999
Q ss_pred ccHHH
Q 027179 213 VRVET 217 (227)
Q Consensus 213 gDa~~ 217 (227)
+++.+
T Consensus 105 ~R~E~ 109 (184)
T PF02527_consen 105 GRAEE 109 (184)
T ss_dssp S-HHH
T ss_pred eeecc
Confidence 99988
No 222
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.68 E-value=0.0033 Score=54.45 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=42.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
...+|+|+|.|+|.++++++.. ...+++.+|. |+.+ +.+++ .++++++.+|.++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~ 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDP 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTC
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhh
Confidence 3468999999999999999875 4468999998 8787 77776 56899999998753
No 223
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.65 E-value=0.0013 Score=58.37 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHH--HHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE--AISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 135 ~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~--aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
.+..++|+..-.... ...+-+++|-|||+|.+--- ++.+ .-..|++-|+|++++ ++|++|+....
T Consensus 34 RLAsEi~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~LLt 101 (246)
T PF11599_consen 34 RLASEIFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLSLLT 101 (246)
T ss_dssp HHHHHHHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhhhcc
Confidence 355556665422210 12456899999999998433 3333 236899999999999 99999987553
No 224
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.64 E-value=0.0031 Score=55.92 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
.+.+++|+||=-+.+++.+...+ +..++++|+++..+ +.+.+|+..+++.+++++.++|.+..|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLEL 82 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccCc
Confidence 34569999999999999998864 67999999999999 99999999999999999999998776654
No 225
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.60 E-value=0.0095 Score=58.14 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=53.1
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
.+..+||+|||.|.+.++.|.. ....+++||+....+ ..+.+.++..++. |+.+++.|+..+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~-N~~~~~~~~~~~~~ 411 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNIT-NFLLFPNNLDLILN 411 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCC-eEEEEcCCHHHHHH
Confidence 4678999999999999999875 346799999999988 7777788888886 58999999765443
No 226
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0032 Score=57.86 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=46.2
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
..+++|||||.|.+.+.+...|..-+.++|+++.|+ +.-+.|... ..++..|+.++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~ 59 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELD 59 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcC
Confidence 358999999999999988888888899999999999 888877643 346666766544
No 227
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.047 Score=49.82 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=57.8
Q ss_pred CCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEccHHHHHHHHhh
Q 027179 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQ 224 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ng--l-~~~v~~i~gDa~~~L~~~~~ 224 (227)
.++||=+|-|.|.+.-++++.. ..+++.||+|+..+ +++++-+.... . +.|++++.+|..+++++.+.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 3699999999999999998864 68999999999999 99998765443 2 36899999999999997654
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.33 E-value=0.0063 Score=57.25 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=31.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~A 190 (227)
.++.++|||||++|.++-.++.+|+ +|++||..+-+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~ 245 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA 245 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC
Confidence 4688999999999999999999998 89999966543
No 229
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.0061 Score=55.81 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=41.9
Q ss_pred EEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 159 VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
|+|||||.|.+++.+-..|..-|.++|+++.|+ +..+.|... .++++|+.+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~~-------~~~~~Di~~~ 52 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFGN-------KVPFGDITKI 52 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCCC-------CCCccChhhh
Confidence 689999999999988778887788999999998 898888531 3455666654
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0058 Score=54.80 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=34.8
Q ss_pred CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
+.++++|||+|+-||.|+--++.+||++|+|||..-.-+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql 115 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL 115 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc
Confidence 368899999999999999999999999999999876443
No 231
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.28 E-value=0.0088 Score=58.12 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
.-+++|||||.|.+++.+-..|..-|.++|+++.|+ +.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHc
Confidence 458999999999999988777877899999999998 8888885
No 232
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.09 E-value=0.0089 Score=53.88 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.5
Q ss_pred CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
+..+|+|||+|.-++.++.. .++|+|+|+|+.++ +.+++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKH 74 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcC
Confidence 38999999999777766654 46899999999999 888873
No 233
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.05 E-value=0.025 Score=50.95 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
....+|+-+..... +....+|||+|||.|+-..++.. ....++++||.|+.+. +.++.=+
T Consensus 17 ~~~~vl~El~~r~p---~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~ 78 (274)
T PF09243_consen 17 AVYRVLSELRKRLP---DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLL 78 (274)
T ss_pred HHHHHHHHHHHhCc---CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHH
Confidence 34445555554321 35678999999999987665543 2457899999999998 8777643
No 234
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.74 E-value=0.0088 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPW 189 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~ 189 (227)
.+.+||||||+.|.++-.++.++ ..+|++||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999999998887 679999999876
No 235
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.63 E-value=0.032 Score=51.71 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~ 212 (227)
+.+.++++++|.. .++..++|.=-|.|.-+.+++.. +..+|+++|.|+.|+ +.++++++.+ .+++.+++
T Consensus 6 PVll~Evl~~L~~-------~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~ 75 (310)
T PF01795_consen 6 PVLLKEVLEALNP-------KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIH 75 (310)
T ss_dssp -TTHHHHHHHHT---------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEE
T ss_pred cccHHHHHHhhCc-------CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEe
Confidence 3455667777764 46779999999999999999874 447999999999999 8998887655 46899999
Q ss_pred ccHHHHHHHHh
Q 027179 213 VRVETFLERAE 223 (227)
Q Consensus 213 gDa~~~L~~~~ 223 (227)
++..++-+.+.
T Consensus 76 ~~F~~l~~~l~ 86 (310)
T PF01795_consen 76 GNFSNLDEYLK 86 (310)
T ss_dssp S-GGGHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 98665554444
No 236
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.29 E-value=0.039 Score=51.91 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-CCC----cEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD----VSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng-l~~----~v~~i~gDa~~ 217 (227)
+++.++|||||-|.=-+-.-+.|..+.+++||.+..+ +.|++-.+... ... .+.|+.+|.+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 5678999999999988887778889999999999998 88887554221 111 37899999875
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.27 E-value=0.018 Score=43.54 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=22.8
Q ss_pred EEeccCCCHHHHHHHH---c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHh
Q 027179 160 LDLYSGTGSVGIEAIS---R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223 (227)
Q Consensus 160 LDLgsGTG~isI~aas---~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~ 223 (227)
|++|++.|..++.+++ . +..++++||..+. . +..+++++..++.++++++++|..+.+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP 66 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC
Confidence 5789888988877654 2 2237999999996 3 4556666667777789999999999887664
No 238
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.23 E-value=0.14 Score=47.41 Aligned_cols=66 Identities=9% Similarity=-0.050 Sum_probs=46.7
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~-~v~~i~gDa~~~L~~ 221 (227)
++..++|||||+|.=.-.++. .+ ....++||+|.+++ +.+.+++......+ .+.-+++|-.+.+..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence 456899999999986433221 21 24689999999999 89999887333331 345589998877653
No 239
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.11 E-value=0.08 Score=47.18 Aligned_cols=79 Identities=14% Similarity=-0.031 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE-E
Q 027179 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-I 210 (227)
Q Consensus 133 te~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~-~ 210 (227)
++.-+..+|+-+....+ ......||++|||||.-=-..- +.++ +||++|.++.+- +.+.+.+..+.-. +++ +
T Consensus 57 ~~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~-~~~~f 130 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPL-QVERF 130 (252)
T ss_pred HHHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCc-ceEEE
Confidence 34456667776543221 1223358999999998544332 2444 799999999998 9999988888433 455 8
Q ss_pred EEccHHH
Q 027179 211 HTVRVET 217 (227)
Q Consensus 211 i~gDa~~ 217 (227)
+.++..+
T Consensus 131 vva~ge~ 137 (252)
T KOG4300|consen 131 VVADGEN 137 (252)
T ss_pred Eeechhc
Confidence 8887665
No 240
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.89 E-value=0.15 Score=36.21 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=35.4
Q ss_pred EEEeccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 159 VLDLgsGTG~isI~aas~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|+|||+|... .++.... ..++++|.++.++ ...+.+....+. ..+.++.+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEecccc
Confidence 999999999976 2232221 3799999999998 664444332211 115666666543
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.85 E-value=0.12 Score=49.60 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH-----hCCC-CcEEEEEccHHHHHHHHh
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW-----TGFL-DVSSIHTVRVETFLERAE 223 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~-----ngl~-~~v~~i~gDa~~~L~~~~ 223 (227)
.-.+||=||-|.|--.-++.+. +..+++-||.||+++ +.+++|... +.++ .|++++..|+++|+++..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 3468999999999988888876 478999999999999 999976432 2233 489999999999998753
No 242
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.015 Score=56.83 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~ 220 (227)
++-+|||-.|+||.-+|-.+.. |..+|++-|.++.++ +..++|++.|++++.++..++|+...+-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMY 175 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHH
Confidence 5568999999999999998873 778999999999999 9999999999999999999999976553
No 243
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.53 E-value=0.11 Score=50.64 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G----CSEVHFVEMDPWVVSNVLIPNLEWT 202 (227)
Q Consensus 128 ~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G----a~~V~aVEis~~Al~~~ar~N~~~n 202 (227)
+--.|+..+.+.+...+.. .+..+|+|-+||||.+=+.+... + ....++.|+++... .+++.|.-.+
T Consensus 166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lh 237 (489)
T COG0286 166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILH 237 (489)
T ss_pred CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHh
Confidence 4556777777777666654 24459999999999998877642 1 24689999999999 9999999999
Q ss_pred CCCCcEEEEEccH
Q 027179 203 GFLDVSSIHTVRV 215 (227)
Q Consensus 203 gl~~~v~~i~gDa 215 (227)
|++..+.+..+|.
T Consensus 238 gi~~~~~i~~~dt 250 (489)
T COG0286 238 GIEGDANIRHGDT 250 (489)
T ss_pred CCCcccccccccc
Confidence 9864355666654
No 244
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.39 E-value=0.088 Score=47.50 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
...+|+|+|||.=-+++.+.... ...++|.|||...+ +...+-+...++. .++...|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~--~~~~v~Dl~ 164 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP--HDARVRDLL 164 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C--EEEEEE-TT
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC--cceeEeeee
Confidence 46799999999999999876542 24899999999999 9999998888875 455555553
No 245
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.21 Score=43.92 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=39.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~n 202 (227)
.+++.|||.|+|+|..++++...| .+.+++|++++-+ +.+.+-+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~-~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYV-EVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHH-HHHHHHHHhh
Confidence 578999999999999999877666 4799999999998 8877766544
No 246
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=0.42 Score=44.43 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i 211 (227)
..+..++++.|.. .++...+|.=-|-|.-+-+++... .++++++|.|+.|+ +.+++.+..++ ++++++
T Consensus 9 pVLl~E~i~~L~~-------~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v 78 (314)
T COG0275 9 PVLLNEVVELLAP-------KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLV 78 (314)
T ss_pred chHHHHHHHhccc-------CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEE
Confidence 4566667777765 467899999999999999988763 36799999999999 99999888776 589999
Q ss_pred EccHHHHHHHHh
Q 027179 212 TVRVETFLERAE 223 (227)
Q Consensus 212 ~gDa~~~L~~~~ 223 (227)
+++..+....+.
T Consensus 79 ~~~F~~l~~~l~ 90 (314)
T COG0275 79 HGNFANLAEALK 90 (314)
T ss_pred eCcHHHHHHHHH
Confidence 998666555544
No 247
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.96 E-value=0.089 Score=50.83 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred ecccCCeeecCCCCCCCCCCHHHHHHHHHHHHHhc---CC--CCCCCCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEe
Q 027179 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA---GG--CPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVE 185 (227)
Q Consensus 113 ~G~~~Gr~L~v~~g~~~RPtte~v~ealf~~L~~~---~~--~~~~~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVE 185 (227)
.|+|.+--+.+-+...+-|.++.+.+-.+ +|+.. .. .....++.||||+||--|.=+.++|. .+-+.|+|-|
T Consensus 195 l~~ws~vgl~v~~s~vpigat~e~lag~~-~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD 273 (460)
T KOG1122|consen 195 LGKWSKVGLVVFDSVVPIGATPEYLAGHY-MLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFAND 273 (460)
T ss_pred ccccccceEEEecCccccCCchhhcccce-eeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecc
Confidence 35666666666666677777776554321 23321 11 12345789999999999987766554 4556799999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 186 is~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+..-+ .....|+.+.|+.+ ..+++.|..++
T Consensus 274 ~n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef 304 (460)
T KOG1122|consen 274 SNENRL-KSLKANLHRLGVTN-TIVSNYDGREF 304 (460)
T ss_pred cchHHH-HHHHHHHHHhCCCc-eEEEccCcccc
Confidence 999999 99999999999974 66778887643
No 248
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.07 E-value=0.062 Score=50.92 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHHHhCCCCc-EEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~-------~ar~N~~~ngl~~~-v~~i~gDa 215 (227)
.+|+.|+|-|.|||++=+.+|.-|+ .|++-|||-..+ . .++.|.++.|...+ +.++.+|.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~ 274 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADF 274 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecc
Confidence 5789999999999999999988886 899999998776 4 46788888885432 44666664
No 249
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=92.29 E-value=0.1 Score=47.19 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=38.6
Q ss_pred eEEEeccCCCHHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 158 RWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas~G---a~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
++|++|||.|.....+++.. .-.|++.|.++.|+ +..++|...+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e 121 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE 121 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch
Confidence 79999999999999988642 25899999999999 99999887654
No 250
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=92.28 E-value=0.2 Score=43.35 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar 196 (227)
+..+++|+|||+|++++.+... ...|+.=|+++..+ ...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~-~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLI-NFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHH-HHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHH-HHHH
Confidence 5679999999999999986554 45899999999876 5444
No 251
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.23 E-value=0.29 Score=44.50 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
...++||||+|.|.++..++.. ..+|++-|.|+.+...+.+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg 136 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG 136 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC
Confidence 5678999999999999998764 457999999998873333433
No 252
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.10 E-value=0.41 Score=37.80 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=32.6
Q ss_pred EeccCCC--HHHHHHH--Hc-CCCEEEEEeCCHHHHHHHHHHH--HHHhCCCCcEEEEE
Q 027179 161 DLYSGTG--SVGIEAI--SR-GCSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIHT 212 (227)
Q Consensus 161 DLgsGTG--~isI~aa--s~-Ga~~V~aVEis~~Al~~~ar~N--~~~ngl~~~v~~i~ 212 (227)
|+||+.| ...+..+ .. ...+|+++|.+|..+ +.+++| +..+...+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6555543 22 346899999999998 999999 77775543355544
No 253
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.95 E-value=1.3 Score=39.88 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=41.8
Q ss_pred CCCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
+..++++|=+|=.- .+||+++. ...++|+.||+|++.+ +..++.++..|+. ++.++.|+.+.|..
T Consensus 42 dL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~DlR~~LP~ 107 (243)
T PF01861_consen 42 DLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYDLRDPLPE 107 (243)
T ss_dssp -STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---T
T ss_pred cccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEecccccCCH
Confidence 37889999887443 55777665 4567999999999999 9999999999994 99999999887764
No 254
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=91.95 E-value=0.26 Score=43.65 Aligned_cols=65 Identities=22% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
...+.||.|||.|.++-.++..-+.+|..||.++.-+ +.|++.+...+ ....++++.-+.+|-..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC
Confidence 4579999999999999988777788999999999998 88887654411 12245666666665443
No 255
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.86 E-value=0.13 Score=47.19 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
..+++|||||||+|.-+|.+...|+..|++-|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 57889999999999999999888878899999998765
No 256
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=91.76 E-value=0.19 Score=51.81 Aligned_cols=45 Identities=36% Similarity=0.499 Sum_probs=39.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.++..++|-|+|-|+|.++++..|+ .|++||.+|.|. -..++-++
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHh
Confidence 4667899999999999999999996 799999999998 67776554
No 257
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.61 E-value=0.53 Score=41.26 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 027179 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 132 tte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~ 210 (227)
-.+.=++-+++.|+.... ..+.+||+++||||.=+..++.. ..-.=.--|.++... .-++..+...++.|-...
T Consensus 6 AaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P 80 (204)
T PF06080_consen 6 AAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPP 80 (204)
T ss_pred hhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCC
Confidence 344444555555554321 12336999999999999999874 334566778999887 788888888877643334
Q ss_pred EEccH
Q 027179 211 HTVRV 215 (227)
Q Consensus 211 i~gDa 215 (227)
+.-|+
T Consensus 81 ~~lDv 85 (204)
T PF06080_consen 81 LALDV 85 (204)
T ss_pred eEeec
Confidence 44444
No 258
>PRK00536 speE spermidine synthase; Provisional
Probab=91.31 E-value=1.8 Score=39.25 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=56.8
Q ss_pred ccceEEEEecccCCeeecCCCCCCCCCCHH-HHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEE
Q 027179 105 THRLLQVLGGKARRKKLLSPKGMDVRPMME-VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF 183 (227)
Q Consensus 105 ~~~~L~ii~G~~~Gr~L~v~~g~~~RPtte-~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~a 183 (227)
....+.|..-...|+-|.+. +.+. -+.+ .+-.+++-...... ....++||=+|.|-|...-|+++.. .+|+.
T Consensus 27 ~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHppl~~----h~~pk~VLIiGGGDGg~~REvLkh~-~~v~m 99 (262)
T PRK00536 27 EHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHMGGCT----KKELKEVLIVDGFDLELAHQLFKYD-THVDF 99 (262)
T ss_pred CCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHHHHhh----CCCCCeEEEEcCCchHHHHHHHCcC-CeeEE
Confidence 34455666666667777776 5443 2222 22222222211111 1356899999999999999998765 48999
Q ss_pred EeCCHHHHHHHHHHH
Q 027179 184 VEMDPWVVSNVLIPN 198 (227)
Q Consensus 184 VEis~~Al~~~ar~N 198 (227)
||+|++.+ +.+++-
T Consensus 100 VeID~~Vv-~~~k~~ 113 (262)
T PRK00536 100 VQADEKIL-DSFISF 113 (262)
T ss_pred EECCHHHH-HHHHHH
Confidence 99999999 999993
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.77 E-value=0.53 Score=38.97 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=29.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 180 ~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
+|+++|+.++|+ +.+++.++.+++.+++++++..=
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sH 35 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSH 35 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-G
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCH
Confidence 699999999999 99999999999988999998653
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.68 E-value=0.38 Score=42.83 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=51.2
Q ss_pred CeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC------CCCcEEEEEccHHHHHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ng------l~~~v~~i~gDa~~~L~~~ 222 (227)
-.+.|+|||=|.+-++++-. ...-+.+.||-.... +..++-++..+ ...++.+++.+++.++.++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 46999999999999998754 446799999988886 88888777665 1235889999998888664
No 261
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.66 E-value=0.36 Score=43.15 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=41.4
Q ss_pred CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HHHHHhCC-----CCcEEEEEccHHHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI---PNLEWTGF-----LDVSSIHTVRVETFLE 220 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar---~N~~~ngl-----~~~v~~i~gDa~~~L~ 220 (227)
.+|||.=+|-|.=++-++..|+ +|+++|.||... .+.+ +++....- ..+++++++|..++|.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 4899999999999998888887 699999999764 4444 34433221 1379999999998876
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=0.34 Score=42.51 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=38.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.++.+|+||||--|+++-.++.. +. ..|++||+.|-.. .. ++.++++|.+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~-~V~~iq~d~~ 95 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IP-GVIFLQGDIT 95 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CC-CceEEeeecc
Confidence 35789999999999999988875 32 3599999999664 22 3677777764
No 263
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.09 E-value=0.77 Score=45.84 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCeEEEeccCCCHHHHHHHH---c--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAIS---R--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas---~--Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L 219 (227)
..+++=+|+|-|-+.-..++ . ..-++++||.||.|+ ...+|.+....+++|++|.+|+.++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAi--vtL~~~n~~~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAI--VTLQNRNFECWDNRVTIISSDMRKWN 434 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchh--hhhhhhchhhhcCeeEEEeccccccC
Confidence 34788999999999765442 1 134799999999998 56667666667789999999998764
No 264
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.72 E-value=0.49 Score=42.67 Aligned_cols=47 Identities=36% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl 204 (227)
...||.||+|||-.|+.++.....+|+.-|. +..+ +..+.|...|+.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~-~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVV-ENLKFNRDKNNI 133 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhH-HHHHHhhhhhhh
Confidence 4569999999999999988854456777775 4444 566666555543
No 265
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=89.32 E-value=2.7 Score=37.63 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v 208 (227)
|-...+..+++.-+.... -.++.+||-||+.+|+.--+.+-- | .+.|+|||.+++.. ..+- ++.... .|+
T Consensus 53 P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~NI 124 (229)
T PF01269_consen 53 PFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--PNI 124 (229)
T ss_dssp TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--TTE
T ss_pred chhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--Cce
Confidence 777888888766554221 146789999999999988777642 3 45799999999886 4433 232222 256
Q ss_pred EEEEccHH
Q 027179 209 SIHTVRVE 216 (227)
Q Consensus 209 ~~i~gDa~ 216 (227)
-.|-+|+.
T Consensus 125 iPIl~DAr 132 (229)
T PF01269_consen 125 IPILEDAR 132 (229)
T ss_dssp EEEES-TT
T ss_pred eeeeccCC
Confidence 66777765
No 266
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=89.10 E-value=0.84 Score=41.72 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=39.3
Q ss_pred CCeEEEeccCCCHHH-HHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEccHHHHHHHHhh
Q 027179 156 PGRWLDLYSGTGSVG-IEAISR-G-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQ 224 (227)
Q Consensus 156 ~~~VLDLgsGTG~is-I~aas~-G-a~~V~aVEis~~Al~~~ar~N~~-~ngl~~~v~~i~gDa~~~L~~~~~ 224 (227)
+.+|+=+|||.=-++ |.+++. + ...|+++|+|++|+ +.+++=++ ..++.++++|+++|+.+.-..+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDLKE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcccccccc
Confidence 458998888754443 444433 3 24799999999999 99998776 667778899999998765444433
No 267
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.97 E-value=1.5 Score=39.02 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=58.9
Q ss_pred cCCeeecCCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHH
Q 027179 116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVV 191 (227)
Q Consensus 116 ~~Gr~L~v~~g~~~---RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al 191 (227)
.+|-++---.+..+ .|-...+..++++=|.... -.++.+||=||+-+|+..-+.+.- |.+.|++||.+++..
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~ 113 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM 113 (231)
T ss_pred ccCceeEEecCcceeeeCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH
Confidence 34444433333333 3778888888877665431 146889999999999988777653 556799999999876
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 192 SNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 192 ~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.-+..=++. .+|+-.+-+|+.
T Consensus 114 -reLl~~a~~---R~Ni~PIL~DA~ 134 (231)
T COG1889 114 -RELLDVAEK---RPNIIPILEDAR 134 (231)
T ss_pred -HHHHHHHHh---CCCceeeecccC
Confidence 332222221 124555666654
No 268
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.60 E-value=4.5 Score=35.96 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCCeEEEeccCCC----HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc-HHHHHHHHh
Q 027179 155 RPGRWLDLYSGTG----SVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAE 223 (227)
Q Consensus 155 ~~~~VLDLgsGTG----~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gD-a~~~L~~~~ 223 (227)
.-+.+++.+|+-| ++++++|.+ -.+++++|-.+++.. ...++.+...++.+.++|+.+| ..+.+..++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhcc
Confidence 4467899876644 456665553 345799999999887 7888888878887778999998 456776654
No 269
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=88.41 E-value=1.9 Score=37.21 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=28.0
Q ss_pred CCCeEEEeccCCCH----HHHHHHH--c-CC---CEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGS----VGIEAIS--R-GC---SEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsGTG~----isI~aas--~-Ga---~~V~aVEis~~Al~~~ar~ 197 (227)
..-+||..||+||- +++.+.. . .. -+++|.|+|+.++ +.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHh
Confidence 44689999999993 4443333 1 12 3899999999999 88875
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.56 E-value=1.9 Score=37.93 Aligned_cols=59 Identities=15% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCeEEEeccCCCHHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
+++.++++|.-.|.=.+..|+ . +..+|++||++.... . ++-++.+.+..+|++++||..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-~--~~a~e~hp~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-N--RKAIESHPMSPRITFIQGDSI 95 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-c--hHHHhhccccCceEEEECCCC
Confidence 567999999999888876664 2 457899999976544 2 222333445578999999974
No 271
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.47 E-value=1.5 Score=41.56 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=40.8
Q ss_pred EEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 159 WLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 159 VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
=+|+|.| +..|+.+- ...-.-.+.|++.-.+ ..+..|+..|++.+.+.+++...
T Consensus 106 GiDIgtg--asci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 106 GIDIGTG--ASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred eeeccCc--hhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecc
Confidence 4687655 45555542 2224688999999999 99999999999998888887643
No 272
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=4.7 Score=38.44 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~---------Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
+.+...+.+.++..+. ...-.++++|+|+|.+.--+++. .+.+++.||.|++-. +.-+++++...
T Consensus 60 ella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~-~~Qk~~L~~~~ 133 (370)
T COG1565 60 ELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR-ARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH-HHHHHHHhccc
Confidence 4566666666665431 23457999999999998776641 256899999999987 77676666543
No 273
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=84.74 E-value=2.6 Score=39.28 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCCCCeEEEeccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHH
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas~-Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~ 221 (227)
+..++.|+=+| ----.||+++.. -+++|..||+|+..+ +...+-++..|+. +++.+.-|+.+.+..
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~-~ie~~~~Dlr~plpe 216 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYN-NIEAFVFDLRNPLPE 216 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCcc-chhheeehhcccChH
Confidence 57888899888 666778887654 468999999999999 9999999999985 589888898776643
No 274
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=83.69 E-value=2.3 Score=38.79 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=36.6
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
....++|+||+-|.+.-.+..+|..+.+.+|.|-.++ +.++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~ 113 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD 113 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc
Confidence 3468999999999999998888999999999999998 66653
No 275
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.48 E-value=4.1 Score=39.46 Aligned_cols=41 Identities=15% Similarity=0.006 Sum_probs=31.4
Q ss_pred CCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
-+.|+|+|+|-|.++-.++-...-.|.+||-|.... +.+++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~-~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV-ERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHH-HHHHH
Confidence 368999999999999876543335799999998766 54443
No 276
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=83.09 E-value=4.1 Score=39.62 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=40.3
Q ss_pred CCCeEEEeccCCCHHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas---~G--a~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
+.+.+.|++||||.+-++... .| ....++-|.++... ..++.|...+++.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~ 271 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNID 271 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCC
Confidence 457899999999999887543 12 24699999999998 8999998877764
No 277
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=82.38 E-value=5.9 Score=36.00 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCC----HHHHHHHHcC------CCEEEEEeCCHHHHHHHHHH
Q 027179 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG----SVGIEAISRG------CSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 134 e~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG----~isI~aas~G------a~~V~aVEis~~Al~~~ar~ 197 (227)
+.+...++..+..... ...-+||-.+|+|| ++++.+...+ .-+|+|.|+|..++ +.|++
T Consensus 79 ~~l~~~v~p~l~~~~~----~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~ 147 (268)
T COG1352 79 EELRDEVLPELVKRKK----GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARA 147 (268)
T ss_pred HHHHHHHHHHHHhhcc----CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhc
Confidence 5566666665543210 13568999999999 4555444322 25899999999999 88774
No 278
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.02 E-value=3.2 Score=41.04 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=34.5
Q ss_pred CCeeecCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCC
Q 027179 117 RRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178 (227)
Q Consensus 117 ~Gr~L~v~~g~~~-RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga 178 (227)
.|-.|.+|.|-.. .-..+.-.+.+-+++.... ....-..+||+|||+|+||-.++.++.
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~---~~g~iR~~LDvGcG~aSF~a~l~~r~V 140 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK---WGGGIRTALDVGCGVASFGAYLLERNV 140 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccc---cCCceEEEEeccceeehhHHHHhhCCc
Confidence 3556667665321 1133444444444443310 001225799999999999999998875
No 279
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.00 E-value=1.7 Score=41.83 Aligned_cols=62 Identities=18% Similarity=0.026 Sum_probs=46.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh-------CC-CCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT-------GF-LDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~n-------gl-~~~v~~i~gDa~ 216 (227)
.+++.+.|||+|.|.+....+. .+++.-.++|+..... +.+..|.+.+ |. .+.++.++++..
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4678999999999999887665 4778889999988776 7777776544 33 345778888764
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.75 E-value=3 Score=39.40 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=37.9
Q ss_pred CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
..+.+||=+|||. |.+++.+|+ .||.+|+.+|.++..+ ++|++ +|.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCe
Confidence 4678999999985 555666666 4999999999999999 89886 6654
No 281
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.67 E-value=3.6 Score=38.17 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCCCCCeEEEeccCCCH---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 152 ASLRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 152 ~~~~~~~VLDLgsGTG~---isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+..++.||==|+|+|. +++++|++|+ ++...|++++.. +...++++.+| ++....+|+.+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCC
Confidence 34678899999999984 7888888998 799999999998 77777777776 46777777643
No 282
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=81.56 E-value=3.1 Score=38.08 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCeEEEeccCCCH----HHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHH
Q 027179 156 PGRWLDLYSGTGS----VGIEAISR-G----CSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 156 ~~~VLDLgsGTG~----isI~aas~-G----a~~V~aVEis~~Al~~~ar~N 198 (227)
.-+||..||.||- +++.+... + .-+|+|.|+|+.++ +.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhC
Confidence 3699999999993 44433321 1 24799999999999 988875
No 283
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.64 E-value=4.3 Score=35.63 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHH
Q 027179 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEW 201 (227)
Q Consensus 136 v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~---------Ga~~V~aVEis~~Al~~~ar~N~~~ 201 (227)
+...+.++++..+. ....-+|+++|+|+|.++.-++.. ...+++.||+|+... +..++.+..
T Consensus 2 ia~~~~~~~~~~~~---p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGR---PSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT-----SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHHCCC
T ss_pred hHHHHHHHHHHcCC---CCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHHhhh
Confidence 34455555554321 012358999999999999887741 124899999999887 777776654
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.60 E-value=10 Score=34.67 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=60.4
Q ss_pred ccCCee-ecCCCCC--CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHH-H-cCCCEEEEEeCCHH
Q 027179 115 KARRKK-LLSPKGM--DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-S-RGCSEVHFVEMDPW 189 (227)
Q Consensus 115 ~~~Gr~-L~v~~g~--~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aa-s-~Ga~~V~aVEis~~ 189 (227)
+|++.+ ..+|+|. -+-|......-.+-+.|....+ ....++-+.||+|.|.-+|==-+- . .| -+-++-|+|+.
T Consensus 36 ~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g-~~~~~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~ 113 (292)
T COG3129 36 HFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSG-QIPGKNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQ 113 (292)
T ss_pred HhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCC-CCCcCceEEEeeccCcccccccccceeec-ceeecCccCHH
Confidence 455555 7888885 3556666555555555544321 011245589999888765421111 1 24 36889999999
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEE
Q 027179 190 VVSNVLIPNLEWT-GFLDVSSIHT 212 (227)
Q Consensus 190 Al~~~ar~N~~~n-gl~~~v~~i~ 212 (227)
++ +.|+.|+..| +++..+++.+
T Consensus 114 sl-~sA~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 114 SL-SSAKAIISANPGLERAIRLRR 136 (292)
T ss_pred HH-HHHHHHHHcCcchhhheeEEe
Confidence 99 9999999999 7766666553
No 285
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=78.43 E-value=7.8 Score=35.03 Aligned_cols=65 Identities=20% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
++.+||++|-|-|.+.-.+=.+...+=+-+|.+|..+ +..+++.=.. .++|.++.+.+.+.+.++
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~e--k~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWRE--KENVIILEGRWEDVLNTL 165 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccccc--ccceEEEecchHhhhccc
Confidence 6789999999999988765444455567899999998 7777664322 247889999988887664
No 286
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=77.90 E-value=2 Score=34.48 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=27.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~A 190 (227)
+...++|||||.|.+---+.+.|- .-+++|.-.+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~Rk 92 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRRK 92 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccccc
Confidence 345799999999999877777775 47888876544
No 287
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=77.51 E-value=1.7 Score=38.29 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHcCCCC-ccccCCCCCcc-cccccCCCCccccccccccccc
Q 027179 55 TSEDKKELLKRYGLDP-DEFLSEPSPKT-RRRKEGRGSKLVVSDEKSQEER 103 (227)
Q Consensus 55 ~~~~~~~~~~~~G~~~-~~~~~~~l~~~-er~~~~~~~~~~~~~~~~~~~~ 103 (227)
...+-+.+|.+.|.+. +..|+|+|+|+ ||+ ..+.+++...++ +++.
T Consensus 152 ~P~~IA~~L~~~G~~~~~~~VlE~L~~~~Eri--~~~~~~~~~~~~-fsdl 199 (210)
T COG2241 152 GPAEIAKLLTENGIGDSRVTVLENLGYPDERI--TDGTAEDIAAEE-FSDL 199 (210)
T ss_pred CHHHHHHHHHhCCCCCceEEEEcccCCCchhh--hcCchhhhcccc-cCCc
Confidence 3456689999999984 88999999999 999 888888888766 6665
No 288
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=77.41 E-value=17 Score=33.19 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
.+.+||--|||.|.++-++|.+|. .|.+.|.|--++ + --|.-.|+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml--l-~s~fiLn~ 100 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML--L-ASNFILNH 100 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH--H-HHHHHHcc
Confidence 456899999999999999999987 699999998875 2 33444454
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.32 E-value=6.2 Score=36.40 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.4
Q ss_pred CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
..+.+||..|||+ |.+.+.+|+ .|+.+|++++.+++.. +.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc
Confidence 3567899998876 666677666 4766799999999887 777653
No 290
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.26 E-value=6.7 Score=36.23 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=32.1
Q ss_pred CCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.+.+|+=+|||. |.+++.+++ .|+.+|+++|.++.-+ +.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHH
Confidence 344788888875 555555555 5899999999999998 88876
No 291
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.33 E-value=17 Score=31.27 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=39.4
Q ss_pred CeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.| |||.+|..++ .+|+ +|++++.+++.. +...+.....+...+++++.+|+.+
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGY-LVIATMRNPEKQ-ENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCCceeEEecCCCC
Confidence 4566666 6667777765 3565 799999988776 5555544444444568899999865
No 292
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=74.17 E-value=4.9 Score=38.21 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
.++..|.=.||| .+|+++. ..|+.++++||++++.+ +++++ +|..
T Consensus 184 ~~G~tvaV~GlG--gVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~----fGAT 232 (366)
T COG1062 184 EPGDTVAVFGLG--GVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKK----FGAT 232 (366)
T ss_pred CCCCeEEEEecc--HhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHh----cCCc
Confidence 356677666654 5666543 25899999999999998 88774 6653
No 293
>PTZ00357 methyltransferase; Provisional
Probab=73.94 E-value=5.3 Score=41.57 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=41.5
Q ss_pred eEEEeccCCCHHHHHH---HHc-CC-CEEEEEeCCHHHHHHHHHHHHHHh-CC-------CCcEEEEEccHHHH
Q 027179 158 RWLDLYSGTGSVGIEA---ISR-GC-SEVHFVEMDPWVVSNVLIPNLEWT-GF-------LDVSSIHTVRVETF 218 (227)
Q Consensus 158 ~VLDLgsGTG~isI~a---as~-Ga-~~V~aVEis~~Al~~~ar~N~~~n-gl-------~~~v~~i~gDa~~~ 218 (227)
.|+=+|+|=|-+--.+ +.. |. -+|++||+|+.++ ...+.+...+ .. .++|++|++|+.++
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA-~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAA-AFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchH-HHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 5899999999985443 332 33 4799999997765 4555553222 22 34699999999886
No 294
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.13 E-value=19 Score=29.94 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=40.0
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+..+|=.| |+|.+|..++. .|+ +|++++.++... +...+.+... .++.++.+|+.+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~---~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGY-KVAITARDQKEL-EEAAAELNNK---GNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCC-EEEEeeCCHHHH-HHHHHHHhcc---CcEEEEEccCCC
Confidence 456788777 58888888764 465 699999998776 5555544432 357888888653
No 295
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.63 E-value=24 Score=29.53 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=41.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++++=.| |+|.+|..++. .|+ +|+.++.++... +...+.++..+ .++.++.+|+.+
T Consensus 5 ~~~~~vlVtG-~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 67 (239)
T PRK07666 5 LQGKNALITG-AGRGIGRAVAIALAKEGV-NVGLLARTEENL-KAVAEEVEAYG--VKVVIATADVSD 67 (239)
T ss_pred CCCCEEEEEc-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhC--CeEEEEECCCCC
Confidence 3456788888 58888887653 576 899999998776 55555554333 368888888743
No 296
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=72.57 E-value=6.3 Score=34.90 Aligned_cols=35 Identities=23% Similarity=0.068 Sum_probs=28.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHHc--CCCEEEEEeCCH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDP 188 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~--Ga~~V~aVEis~ 188 (227)
.++.+|||+||--|+++--+-.+ ..+.|.+||+-+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 46789999999999999887654 346799999743
No 297
>PRK06949 short chain dehydrogenase; Provisional
Probab=72.42 E-value=22 Score=29.97 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=42.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|++++.+++.+ +.+...++..+ .++.++.+|+.+
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 69 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERL-KELRAEIEAEG--GAAHVVSLDVTD 69 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCCC
Confidence 4677888888 77788887764 465 799999998887 66666554433 357788888743
No 298
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=72.31 E-value=2.5 Score=39.03 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
..++.+.|+|+|||.+|-.+-+.|. .|++=|+---.. ++-+|.-
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~ysy--lln~~yi 69 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEYYSY--LLNQNYI 69 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHHHHH--HHHHHHh
Confidence 4677999999999999998876664 588888755432 4455443
No 299
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=72.25 E-value=6.7 Score=34.90 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCH
Q 027179 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (227)
Q Consensus 138 ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~ 188 (227)
..+++|+... ..+..|.|+|||.+.++-.. ..+ -.|+..|.-.
T Consensus 61 d~iI~~l~~~------~~~~viaD~GCGdA~la~~~-~~~-~~V~SfDLva 103 (219)
T PF05148_consen 61 DVIIEWLKKR------PKSLVIADFGCGDAKLAKAV-PNK-HKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S----EEEEESS-
T ss_pred HHHHHHHHhc------CCCEEEEECCCchHHHHHhc-ccC-ceEEEeeccC
Confidence 4466777643 34579999999999999643 222 2466666643
No 300
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.24 E-value=23 Score=30.10 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=41.9
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|+.++.+++.+ +...+.+...+...++.++.+|+.+
T Consensus 5 l~~k~vlVtGa-s~gIG~~~a~~l~~~G~-~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 5 LAGKVALVTGA-AQGIGAAIARAFAREGA-AVALADLDAALA-ERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhccCCceEEEEEccCCC
Confidence 45678887775 567777665 3575 799999998887 6666655542223357888888754
No 301
>PRK07102 short chain dehydrogenase; Provisional
Probab=71.84 E-value=21 Score=30.01 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=39.1
Q ss_pred eEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++=.| |+|.+|.+++. .|+ +|++++.+++.. +...+++...+ ..+++++++|+.+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERL-ERLADDLRARG-AVAVSTHELDILD 62 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHH-HHHHHHHHHhc-CCeEEEEecCCCC
Confidence 566555 67888887654 465 799999999876 55555554433 2368899998865
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.70 E-value=23 Score=29.97 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++. .|+ +|+.++.+++.+ +...+.++..+ .++.++.+|+.+
T Consensus 5 l~~k~ilItGa-s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 67 (253)
T PRK06172 5 FSGKVALVTGG-AAGIGRATALAFAREGA-KVVVADRDAAGG-EETVALIREAG--GEALFVACDVTR 67 (253)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCC
Confidence 45678888885 6777877664 465 799999998877 66666665544 358889998854
No 303
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=71.13 E-value=23 Score=29.98 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.++.++... +.+.+.++..+. ++.++.+|+.+
T Consensus 8 ~~~k~vlItG-a~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~i~~~~~--~~~~~~~D~~~ 70 (255)
T PRK07523 8 LTGRRALVTG-SSQGIGYALAEGLAQAGA-EVILNGRDPAKL-AAAAESLKGQGL--SAHALAFDVTD 70 (255)
T ss_pred CCCCEEEEEC-CcchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCc--eEEEEEccCCC
Confidence 4677888777 68888888764 565 799999998877 666666655443 47788888754
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.91 E-value=11 Score=28.43 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=32.1
Q ss_pred ccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 163 YSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 163 gsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
=||.|.+|..++. .+...|+.||.+++.+ +.+++ .+ +.++.||..+
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~-~~~~~----~~----~~~i~gd~~~ 51 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERV-EELRE----EG----VEVIYGDATD 51 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHH----TT----SEEEES-TTS
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHH-HHHHh----cc----cccccccchh
Confidence 4788899988874 3445899999999987 66553 22 5688888864
No 305
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=70.67 E-value=8.2 Score=34.88 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=32.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
.++.++||+|||.-..-+-.|..-+.++++.|..+.-. +.+++=+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl 99 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWL 99 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHH
Confidence 56789999999997776655666678999999999887 6555543
No 306
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.56 E-value=6.1 Score=37.45 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~ 205 (227)
++..|.=.|. |.+|++++ .+||.++++||+|++-. +.++ .+|..
T Consensus 192 ~GstvAVfGL--G~VGLav~~Gaka~GAsrIIgvDiN~~Kf-~~ak----~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGL--GGVGLAVAMGAKAAGASRIIGVDINPDKF-EKAK----EFGAT 239 (375)
T ss_pred CCCEEEEEec--chHHHHHHHhHHhcCcccEEEEecCHHHH-HHHH----hcCcc
Confidence 5566665555 45666554 26999999999999988 7765 46653
No 307
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=70.35 E-value=0.95 Score=40.64 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
.++.++||||+|.|-++..++- ...+|++-|.|..+.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr 147 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMR 147 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHH
Confidence 3568999999999999998754 345799999988887
No 308
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.27 E-value=27 Score=29.71 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|..++. .|+ +|+.++.+.+.. +...+.+...+ .++.++.+|+.+
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~i~~~~--~~~~~~~~Dl~d 72 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEEL-EEAAAHLEALG--IDALWIAADVAD 72 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEccCCC
Confidence 4567888887 68888888764 476 799999998776 66666555443 357788888864
No 309
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.98 E-value=30 Score=29.27 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=42.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|..++. .|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+
T Consensus 9 ~~~k~ilItG-as~~IG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 71 (256)
T PRK06124 9 LAGQVALVTG-SARGLGFEIARALAGAGA-HVLVNGRNAATL-EAAVAALRAAG--GAAEALAFDIAD 71 (256)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCC
Confidence 4678888777 56777776653 576 799999998876 66666565544 357888888654
No 310
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.92 E-value=35 Score=28.60 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=39.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.++++++=.| |+|.+|.+++. .|. +|+.++.+++.. +...+.+...+- ..+.++..|+.
T Consensus 4 l~~k~vlItG-~sggiG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~D~~ 66 (239)
T PRK08703 4 LSDKTILVTG-ASQGLGEQVAKAYAAAGA-TVILVARHQKKL-EKVYDAIVEAGH-PEPFAIRFDLM 66 (239)
T ss_pred CCCCEEEEEC-CCCcHHHHHHHHHHHcCC-EEEEEeCChHHH-HHHHHHHHHcCC-CCcceEEeeec
Confidence 4567888888 57888887763 465 799999999876 665555544332 13456666653
No 311
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=68.43 E-value=3.3 Score=40.71 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCCeEEEeccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHhhh
Q 027179 155 RPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~~~ 225 (227)
....+|=+|=|+|.+...+- +.+..++++||++|.++ +.+..|.....- ++..++..|..+++.+..+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~ 364 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS-DRNKVHIADGLDFLQRTAKS 364 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh-hhhhhhHhhchHHHHHHhhc
Confidence 34567777888888877643 35667899999999999 999998765543 25677888888888877653
No 312
>PRK06194 hypothetical protein; Provisional
Probab=68.26 E-value=29 Score=29.96 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=39.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. +|+ +|+.+|.+.+.+ +...+.+...+ .++.++.+|+.+
T Consensus 4 ~~~k~vlVtG-asggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~d 66 (287)
T PRK06194 4 FAGKVAVITG-AASGFGLAFARIGAALGM-KLVLADVQQDAL-DRAVAELRAQG--AEVLGVRTDVSD 66 (287)
T ss_pred CCCCEEEEeC-CccHHHHHHHHHHHHCCC-EEEEEeCChHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 3456788555 66778877653 575 799999988766 54444443333 257889999854
No 313
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=67.80 E-value=10 Score=34.57 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 153 ~~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++-|+.+|-|-|.++-.++..|+.+...||+|+.-+ .-.+--.+. -..+..++++|+..
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi-p~LQ~L~EA--a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI-PGLQMLSEA--APGKLRIHHGDVLR 109 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccC-hHHHHHhhc--CCcceEEeccccce
Confidence 356788999999999999998888888999999999765 443332222 23468888888864
No 314
>PRK09242 tropinone reductase; Provisional
Probab=67.75 E-value=34 Score=29.02 Aligned_cols=61 Identities=15% Similarity=-0.024 Sum_probs=42.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++. .|+ +|+.++.+++.+ +...+++....-..++.++.+|+.+
T Consensus 7 ~~~k~~lItGa-~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 7 LDGQTALITGA-SKGIGLAIAREFLGLGA-DVLIVARDADAL-AQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCCeEEEEECCCCC
Confidence 45678888876 5666766653 575 799999998887 6666666554222367888888754
No 315
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.67 E-value=33 Score=29.27 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=40.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++.+|=.|+ +|.+|.+++ ..|+ +|+.++.+++.+ +.+.+.+....-..++.++..|+.+
T Consensus 6 l~~k~~lItGa-s~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 6 LEGRVAVVTGG-SSGIGLATVELLLEAGA-SVAICGRDEERL-ASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEecCCC
Confidence 45678888884 556666655 3576 699999998877 6555555433222357788888755
No 316
>PRK07904 short chain dehydrogenase; Provisional
Probab=67.22 E-value=25 Score=30.26 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=40.2
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHH-HHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWV-VSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~A-l~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++||=.|+ +|.+|.+++. .|..+|+.++.++.. + +.+.+.++..+. .+++++++|+.+
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~-~~~~~~l~~~~~-~~v~~~~~D~~~ 71 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRR-DAAVAQMKAAGA-SSVEVIDFDALD 71 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhH-HHHHHHHHhcCC-CceEEEEecCCC
Confidence 4567887776 6788887764 443589999988764 5 444445555442 258899998754
No 317
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.39 E-value=15 Score=34.98 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
.++++||=+.+ .|.-.+..+..++++|+|||+||.-.
T Consensus 34 ~~~d~vl~ItS-aG~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 34 GPDDRVLTITS-AGCNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred CCCCeEEEEcc-CCchHHHHHhcCCceEEEEeCCHHHH
Confidence 36778888864 45666666778888999999999754
No 318
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.38 E-value=29 Score=28.94 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=39.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. +|. +|+.++.++... +.+..++.. ..++.++.+|+.+
T Consensus 3 ~~~~~vlItG-asg~iG~~l~~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~---~~~~~~~~~D~~~ 64 (251)
T PRK07231 3 LEGKVAIVTG-ASSGIGEGIARRFAAEGA-RVVVTDRNEEAA-ERVAAEILA---GGRAIAVAADVSD 64 (251)
T ss_pred cCCcEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHhc---CCeEEEEECCCCC
Confidence 3456677665 56677777653 565 699999998776 555555543 2357888888753
No 319
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=66.03 E-value=34 Score=28.81 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
.+++++|=.| |+|.+|..++. .|+ +|++++.+++.. +...+.++..+. .++.++.+|+
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~d~ 71 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGA-TVILLGRTEEKL-EAVYDEIEAAGG-PQPAIIPLDL 71 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCC-cEEEEeCCHHHH-HHHHHHHHhcCC-CCceEEEecc
Confidence 3567788777 68888887663 465 799999998877 666665555443 2466777666
No 320
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.97 E-value=36 Score=29.21 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=41.6
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++ .+|+ +|+.++.+++.. +...+.++..+ .++.++.+|+.+
T Consensus 8 ~~~~~vlItG-asggIG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 70 (263)
T PRK07814 8 LDDQVAVVTG-AGRGLGAAIALAFAEAGA-DVLIAARTESQL-DEVAEQIRAAG--RRAHVVAADLAH 70 (263)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence 4567888888 5777887765 4676 899999998876 65555554333 357888888654
No 321
>PRK08251 short chain dehydrogenase; Provisional
Probab=65.73 E-value=37 Score=28.51 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=39.8
Q ss_pred CeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.| |+|.+|.+++. .|+ +|+.++.++... +...+.+....-..++.++.+|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGR-DLALCARRTDRL-EELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEcCCCC
Confidence 4677666 68888887664 464 799999998877 6555555443222357888888764
No 322
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=65.72 E-value=9.4 Score=34.87 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=34.4
Q ss_pred CeEEEeccCCCHHH--HHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 157 GRWLDLYSGTGSVG--IEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 157 ~~VLDLgsGTG~is--I~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+||||||-=+.+ =+.+. ....+|+-||.+|-++ .-++.=+..+.- .+..++++|+.+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 58999999964332 22333 2346899999999988 777765554431 2488999999764
No 323
>PRK05867 short chain dehydrogenase; Provisional
Probab=65.58 E-value=32 Score=29.14 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=41.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++. .|+ +|+.++.+++.+ +...+.++..+ .++.++.+|+.+
T Consensus 7 ~~~k~vlVtGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 69 (253)
T PRK05867 7 LHGKRALITGA-STGIGKRVALAYVEAGA-QVAIAARHLDAL-EKLADEIGTSG--GKVVPVCCDVSQ 69 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEEccCCC
Confidence 45678888886 5566776653 565 799999998887 66666665544 357788888754
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=65.46 E-value=39 Score=29.18 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=40.4
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|++ |.+|.+++ ..|+ +|+.++.+++.+ +.+.+.++... ..++.++.+|+.+
T Consensus 6 l~~k~~lItGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dv~~ 69 (263)
T PRK08339 6 LSGKLAFTTASS-KGIGFGVARVLARAGA-DVILLSRNEENL-KKAREKIKSES-NVDVSYIVADLTK 69 (263)
T ss_pred CCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCC
Confidence 456778877755 45666655 4576 799999998877 66666554331 1257888888765
No 325
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.26 E-value=40 Score=28.10 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. +|+ +|++++.+++.+ +...+.++..+ .++.++.+|+.+
T Consensus 5 ~~~~~vlItG-a~g~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 67 (250)
T PRK12939 5 LAGKRALVTG-AARGLGAAFAEALAEAGA-TVAFNDGLAAEA-RELAAALEAAG--GRAHAIAADLAD 67 (250)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence 4567777444 68889988764 565 699999988876 55554443333 358888888854
No 326
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=64.41 E-value=7.4 Score=36.75 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=36.1
Q ss_pred CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
...+|+|.|.|.+.-.+++. .-+|-+|+.+..-+ ..+.++.. .|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v-~~~a~~~~-~g 222 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFV-LAAAPYLA-PG 222 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHH-Hhhhhhhc-CC
Confidence 68999999999999988884 34699999999888 67777664 44
No 327
>PRK05875 short chain dehydrogenase; Provisional
Probab=63.96 E-value=43 Score=28.72 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| ++|.+|.+++. .|+ +|++++.+++.. +...+.+...+...++.++.+|+.+
T Consensus 5 ~~~k~vlItG-asg~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 5 FQDRTYLVTG-GGSGIGKGVAAGLVAAGA-AVMIVGRNPDKL-AAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhccCCCceEEEEcCCCC
Confidence 3567888777 45667877763 566 799999988765 5444444333222367888888754
No 328
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.83 E-value=43 Score=27.86 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.+++++|=.| |+|.+|..++. .|+ +|+.++.++..+ +.+.+.++..+ .++.+++.|+.
T Consensus 3 ~~~~~~lItG-~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~ 64 (253)
T PRK08217 3 LKDKVIVITG-GAQGLGRAMAEYLAQKGA-KLALIDLNQEKL-EEAVAECGALG--TEVRGYAANVT 64 (253)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCC
Confidence 3567888777 46778877653 565 799999998776 55555554433 35778888864
No 329
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.66 E-value=43 Score=27.86 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. +|. +|++++.++... ....+.+...+ .++.++.+|+.+
T Consensus 4 ~~~~~ilItG-asg~iG~~l~~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~ 66 (251)
T PRK12826 4 LEGRVALVTG-AARGIGRAIAVRLAADGA-EVIVVDICGDDA-AATAELVEAAG--GKARARQVDVRD 66 (251)
T ss_pred CCCCEEEEcC-CCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 3566888666 57888887653 565 799999998766 55555554443 247888888854
No 330
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.96 E-value=40 Score=28.27 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++|| +--|||.+|.+++. .|. +|+.++.++... +...+.++..+ .++.++.+|+.+
T Consensus 3 ~~~~vl-ItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (258)
T PRK12429 3 KGKVAL-VTGAASGIGLEIALALAKEGA-KVVIADLNDEAA-AAAAEALQKAG--GKAIGVAMDVTD 64 (258)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCC
Confidence 345666 44468899988775 464 799999998876 66555555444 357888888753
No 331
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.70 E-value=44 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++++|=.| |+|.+|.+++. .|. +|+.++.+.+.. +.+.+.++..+ .++.++.+|+.+
T Consensus 2 ~~~~ilItG-as~~iG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~d~~~ 63 (250)
T TIGR03206 2 KDKTAIVTG-GGGGIGGATCRRFAEEGA-KVAVFDLNREAA-EKVAADIRAKG--GNAQAFACDITD 63 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCC
Confidence 356677777 56788877764 454 799999998876 66666555443 357888888753
No 332
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.54 E-value=39 Score=28.83 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=39.3
Q ss_pred CCCCeEEEeccCCCHHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~a----as~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++.+|=.|++.|. |.++ +..|+ +|+.++.++..+ +.+.+.++..+. ++..+..|+.+
T Consensus 3 ~~~k~~lVtGas~GI-G~aia~~la~~G~-~V~~~~r~~~~l-~~~~~~i~~~~~--~~~~~~~D~~~ 65 (227)
T PRK08862 3 IKSSIILITSAGSVL-GRTISCHFARLGA-TLILCDQDQSAL-KDTYEQCSALTD--NVYSFQLKDFS 65 (227)
T ss_pred CCCeEEEEECCccHH-HHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcCC--CeEEEEccCCC
Confidence 356788877877654 5444 45676 699999999887 666666655543 45667777643
No 333
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.45 E-value=47 Score=28.61 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|++++.+++.+ +...+.+...+ .++.++..|+.+
T Consensus 7 ~~~k~ilItG-asggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~ 69 (264)
T PRK07576 7 FAGKNVVVVG-GTSGINLGIAQAFARAGA-NVAVASRSQEKV-DAAVAQLQQAG--PEGLGVSADVRD 69 (264)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEECCCCC
Confidence 4567888887 57778876553 565 699999988776 55444444333 246778888753
No 334
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.16 E-value=49 Score=28.91 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=40.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|+.++.++..+ +.+.+.++..+. ++.++.+|+.+
T Consensus 4 ~~~k~vlVTGa-s~gIG~ala~~La~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~--~~~~~~~Dv~d 66 (275)
T PRK05876 4 FPGRGAVITGG-ASGIGLATGTEFARRGA-RVVLGDVDKPGL-RQAVNHLRAEGF--DVHGVMCDVRH 66 (275)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--eEEEEeCCCCC
Confidence 45677887775 566777665 3576 699999998877 555555544443 57788888754
No 335
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=60.93 E-value=48 Score=33.62 Aligned_cols=63 Identities=17% Similarity=-0.005 Sum_probs=49.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+++||=-| |+|+||-++.+ .++++++.+|.|+-++ ...++++...--..++.++-||+.+.
T Consensus 248 ~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~-~~i~~el~~~~~~~~~~~~igdVrD~ 314 (588)
T COG1086 248 LTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKL-YLIDMELREKFPELKLRFYIGDVRDR 314 (588)
T ss_pred cCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHH-HHHHHHHHhhCCCcceEEEecccccH
Confidence 4677888777 77999998874 4788999999999998 78887776542234689999999763
No 336
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=60.77 E-value=10 Score=32.06 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=18.9
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar 196 (227)
|.|.+|+.+| ..| -+|+++|+|++-+ +.+.
T Consensus 7 GlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v-~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKG-HQVIGVDIDEEKV-EALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTT-SEEEEE-S-HHHH-HHHH
T ss_pred CCCcchHHHHHHHHhCC-CEEEEEeCChHHH-HHHh
Confidence 7888887765 346 4899999999977 5443
No 337
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.63 E-value=47 Score=27.57 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=39.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|+=.|+ +|.+|..++. .|+ +|++++.+++.. +.+.+.+...+ ++.++.+|+.+
T Consensus 3 ~~~~~vlItGa-~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~---~~~~~~~Dl~~ 64 (238)
T PRK05786 3 LKGKKVAIIGV-SEGLGYAVAYFALKEGA-QVCINSRNENKL-KRMKKTLSKYG---NIHYVVGDVSS 64 (238)
T ss_pred cCCcEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC---CeEEEECCCCC
Confidence 35678888886 5777777663 465 799999998876 55544443322 47788888754
No 338
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=60.63 E-value=20 Score=35.59 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.++.+|+=+|||. |..++.+|+ .|+ .|+++|.+++.. +.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rl-e~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVA-EQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH
Confidence 4688999999885 444555555 488 799999999988 76664
No 339
>PLN02780 ketoreductase/ oxidoreductase
Probab=60.50 E-value=39 Score=30.63 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=38.8
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.++.+|=.|+ ||.+|.+++ .+|+ +|+.++.+++.+ +...+.++...-..++..+..|+.
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~-~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGL-NLVLVARNPDKL-KDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCC-CEEEEECCHHHH-HHHHHHHHHHCCCcEEEEEEEECC
Confidence 4678888885 555565554 4676 699999999988 766666654321124566666654
No 340
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.16 E-value=49 Score=30.23 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=42.2
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ ||.+|.+++. +|+ +|+.++.+++.+ +...+.++..+. ++.++..|+.+
T Consensus 5 l~~k~vlITGA-s~GIG~aia~~la~~G~-~Vvl~~R~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~d 67 (330)
T PRK06139 5 LHGAVVVITGA-SSGIGQATAEAFARRGA-RLVLAARDEEAL-QAVAEECRALGA--EVLVVPTDVTD 67 (330)
T ss_pred CCCCEEEEcCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCC
Confidence 45667776665 6677777653 576 699999999888 777777766554 47778888753
No 341
>PRK07109 short chain dehydrogenase; Provisional
Probab=60.02 E-value=54 Score=29.78 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=42.1
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++ ..|+ +|+.++.+++.+ +...+.++..+. ++.++.+|+.+
T Consensus 6 l~~k~vlITG-as~gIG~~la~~la~~G~-~Vvl~~R~~~~l-~~~~~~l~~~g~--~~~~v~~Dv~d 68 (334)
T PRK07109 6 IGRQVVVITG-ASAGVGRATARAFARRGA-KVVLLARGEEGL-EALAAEIRAAGG--EALAVVADVAD 68 (334)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEecCCC
Confidence 3456677666 5677887765 3575 799999999887 777766665553 57888888754
No 342
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.87 E-value=54 Score=29.33 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=40.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++++=.|+ +|.||.+++. .|+ +|+.+..+.+.. +.+.+.+....-..++.++.+|+.+
T Consensus 12 l~gk~~lITGa-s~GIG~~~a~~La~~G~-~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dl~d 76 (313)
T PRK05854 12 LSGKRAVVTGA-SDGLGLGLARRLAAAGA-EVILPVRNRAKG-EAAVAAIRTAVPDAKLSLRALDLSS 76 (313)
T ss_pred cCCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEEecCCC
Confidence 45667776665 5677877663 565 799999998776 5555555443222358889988754
No 343
>PRK06181 short chain dehydrogenase; Provisional
Probab=59.65 E-value=49 Score=28.08 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=37.9
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |+|.+|.+++ ..|. +|++++.++... +.+.+.+...+ .++.++.+|+.+
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRL-ASLAQELADHG--GEALVVPTDVSD 61 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence 466555 6778888765 3565 799999998776 65555554433 367888888754
No 344
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.29 E-value=57 Score=28.75 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++||=.| |+|.||.+++. .|+ +|+.+..+++.. +.+.+.+....-..++.++.+|+.+
T Consensus 14 ~~~k~vlItG-as~gIG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d 78 (306)
T PRK06197 14 QSGRVAVVTG-ANTGLGYETAAALAAKGA-HVVLAVRNLDKG-KAAAARITAATPGADVTLQELDLTS 78 (306)
T ss_pred CCCCEEEEcC-CCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEECCCCC
Confidence 4567787666 57788887764 565 799999888776 5555554432212357888998754
No 345
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.75 E-value=54 Score=27.42 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=39.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|..++. .|+ +|+.++.+.+.. +...+++. . ..++.++.+|+.+
T Consensus 3 ~~~k~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~-~--~~~~~~~~~D~~~ 64 (252)
T PRK06138 3 LAGRVAIVTGA-GSGIGRATAKLFAREGA-RVVVADRDAEAA-ERVAAAIA-A--GGRAFARQGDVGS 64 (252)
T ss_pred CCCcEEEEeCC-CchHHHHHHHHHHHCCC-eEEEecCCHHHH-HHHHHHHh-c--CCeEEEEEcCCCC
Confidence 35667777775 6777877653 565 799999988776 55555544 2 2357889988754
No 346
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.42 E-value=59 Score=27.33 Aligned_cols=58 Identities=7% Similarity=-0.009 Sum_probs=40.2
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.| |+|.||.+++ .+|+ +|+.++.++... +.+.+.+...+ .++.++..|+.+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGA-DVVLAARTAERL-DEVAAEIDDLG--RRALAVPTDITD 65 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEecCCCC
Confidence 456788666 5777887755 3576 799999998776 66555554444 357888888853
No 347
>PRK09186 flagellin modification protein A; Provisional
Probab=58.13 E-value=55 Score=27.49 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=38.9
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.|+ +|.+|.+++. .|+ +|+.+..+++.+ +.+.+.+....-...+.++.+|+.+
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGG-IVIAADIDKEAL-NELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEecChHHH-HHHHHHHHhhcCCCceeEEEecCCC
Confidence 4567776775 5678877663 465 799999988876 6665555332112346677888754
No 348
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=57.92 E-value=61 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=35.6
Q ss_pred ccCCCHHHHHHHH----cCCCEEEEEeCC--HHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 163 YSGTGSVGIEAIS----RGCSEVHFVEMD--PWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 163 gsGTG~isI~aas----~Ga~~V~aVEis--~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.-|+|.+|.+++. +|+.+|+.+..+ .+.. +.....++..+ .++.+++.|+.
T Consensus 6 tGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~-~~l~~~l~~~~--~~~~~~~~D~~ 62 (167)
T PF00106_consen 6 TGASSGIGRALARALARRGARVVILTSRSEDSEGA-QELIQELKAPG--AKITFIECDLS 62 (167)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHH-HHHHHHHHHTT--SEEEEEESETT
T ss_pred ECCCCHHHHHHHHHHHhcCceEEEEeeeccccccc-ccccccccccc--ccccccccccc
Confidence 3466788887764 577789999998 4444 44555555455 47999998864
No 349
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=57.88 E-value=27 Score=29.29 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ 201 (227)
|.|.+|..++ ..|. +|+.+|.+++++ +.+++.++.
T Consensus 6 GaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l-~~~~~~i~~ 44 (180)
T PF02737_consen 6 GAGTMGRGIAALFARAGY-EVTLYDRSPEAL-ERARKRIER 44 (180)
T ss_dssp S-SHHHHHHHHHHHHTTS-EEEEE-SSHHHH-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCC-cEEEEECChHHH-HhhhhHHHH
Confidence 4455543333 3564 899999999998 887776664
No 350
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.67 E-value=59 Score=27.54 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++||=.| |+|.+|.+++. .|+ +|+.++.+.... +.+...++..+ .++.++..|+.+
T Consensus 9 l~~k~vlVtG-~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 71 (255)
T PRK06113 9 LDGKCAIITG-AGAGIGKEIAITFATAGA-SVVVSDINADAA-NHVVDEIQQLG--GQAFACRCDITS 71 (255)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence 3577899888 56677777653 465 688899888776 55544444333 257788888764
No 351
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=57.50 E-value=63 Score=27.32 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=36.8
Q ss_pred CeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.| |+|.+|.+++ .+|+ +|+.++.++... +...+.+....-..++.++.+|+.+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGY-RVAVADINSEKA-ANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCceeEEEEccCCC
Confidence 4677777 5677777665 3565 799999988766 5444433322111257888888754
No 352
>PRK07677 short chain dehydrogenase; Provisional
Probab=57.43 E-value=57 Score=27.60 Aligned_cols=55 Identities=9% Similarity=-0.050 Sum_probs=36.4
Q ss_pred CeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
+++|=.|+ +|.+|.+++ ..|+ +|+.++.++... +.+.+.+...+ .++.++.+|+.
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~ 60 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGA-NVVITGRTKEKL-EEAKLEIEQFP--GQVLTVQMDVR 60 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCC
Confidence 46676665 555676655 3576 799999998776 55555454433 35788888874
No 353
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.30 E-value=52 Score=28.30 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=37.4
Q ss_pred CCCCeEEEeccCCC-HHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTG-SVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG-~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++.+|=.|+++| .||.+++. .|+ +|+.++.+.... +.+++-.+..+ .+.++.+|+.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~-~~~~~~~~~~~---~~~~~~~D~~~ 71 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKAR-PYVEPLAEELD---APIFLPLDVRE 71 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhH-HHHHHHHHhhc---cceEEecCcCC
Confidence 46789999998874 77777653 575 688888886543 33333222222 24567778643
No 354
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.26 E-value=10 Score=32.94 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHH-HHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 027179 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (227)
Q Consensus 129 ~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~i-sI~aas-~Ga~~V~aVEis~~Al~~~ar~N~~~n 202 (227)
.=|..|.+...++.--.. ..+.+||+||.|--.+ |+-+|. .....|+.-|-|++++ +..++-...|
T Consensus 10 iwpseeala~~~l~~~n~-------~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n 77 (201)
T KOG3201|consen 10 IWPSEEALAWTILRDPNK-------IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSN 77 (201)
T ss_pred ecccHHHHHHHHHhchhH-------HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcc
Confidence 446677665544432222 4678999999985444 454443 3457899999999998 7777765555
No 355
>PRK06125 short chain dehydrogenase; Provisional
Probab=56.14 E-value=69 Score=27.19 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|++++.+++.. +.+.+.++... ..++.++..|+.+
T Consensus 5 ~~~k~vlItG~-~~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~-~~~~~~~~~D~~~ 68 (259)
T PRK06125 5 LAGKRVLITGA-SKGIGAAAAEAFAAEGC-HLHLVARDADAL-EALAADLRAAH-GVDVAVHALDLSS 68 (259)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCC
Confidence 35667777774 666887765 4576 899999998876 66555554432 2357788888754
No 356
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.92 E-value=65 Score=26.92 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++|=.| |+|.+|..++. .|. +|++++.+++.. +...+.++..+ .++.++.+|+.+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGW-DLALVARSQDAL-EALAAELRSTG--VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhCC--CcEEEEEccCCC
Confidence 45677777 57888877664 565 799999998776 55554444322 357888998854
No 357
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=55.91 E-value=15 Score=34.94 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=43.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
.++..++|++||.|-...+.+..+...+++++.++.-+ .....-.....+.++..++.+|.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~-~~~~~~~~~~~l~~k~~~~~~~~ 169 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEA-FRANELAKKAYLDNKCNFVVADF 169 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHH-HHHHHHHHHHHhhhhcceehhhh
Confidence 45568999999999999998876556799999999766 55555444455555555555544
No 358
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.88 E-value=40 Score=30.29 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.++++||=.|| |.+|+.++ + .|+.+|+++|.+++.. +.+++
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLARE 212 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHH
Confidence 35678887654 67776654 3 4777899999999887 77664
No 359
>PLN02253 xanthoxin dehydrogenase
Probab=55.85 E-value=66 Score=27.67 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=39.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.||.+++. .|+ +|+.++.+++.. +...+.+ +...++.++++|+.+
T Consensus 16 l~~k~~lItG-as~gIG~~la~~l~~~G~-~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~Dl~d 77 (280)
T PLN02253 16 LLGKVALVTG-GATGIGESIVRLFHKHGA-KVCIVDLQDDLG-QNVCDSL---GGEPNVCFFHCDVTV 77 (280)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHh---cCCCceEEEEeecCC
Confidence 4567788777 67788887663 565 799999987765 4443333 222357888888864
No 360
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=55.73 E-value=30 Score=32.62 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=31.5
Q ss_pred CCCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.++++|+=.|+| .|.+++..|+ .| .+|+++|.+++-. +.+++
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~-e~a~~ 208 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKL-ELAKK 208 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHH-HHHHH
Confidence 457777766665 5667777776 58 5899999999987 77664
No 361
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.54 E-value=8.1 Score=36.99 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.7
Q ss_pred CCeEEEeccCCCHHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAIS 175 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas 175 (227)
.-+|+|+|||+|..++.+.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45899999999999987653
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.99 E-value=70 Score=26.90 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++| +-.|+|.+|..++. .|+ +|+.++.+++.. +.+.+.++..+ .++.++.+|+.+
T Consensus 5 ~~~~~vl-ItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 67 (262)
T PRK13394 5 LNGKTAV-VTGAASGIGKEIALELARAGA-AVAIADLNQDGA-NAVADEINKAG--GKAIGVAMDVTN 67 (262)
T ss_pred CCCCEEE-EECCCChHHHHHHHHHHHCCC-eEEEEeCChHHH-HHHHHHHHhcC--ceEEEEECCCCC
Confidence 3456777 44566788877653 565 699999999776 55555554443 357788888753
No 363
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.92 E-value=16 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 165 GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 165 GTG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
|.|.+++.+|+ .| .+|+++|.++... +.+++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~-~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL-ELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH-HHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH-HHHHh
Confidence 46778888776 47 7899999999887 77664
No 364
>PRK07478 short chain dehydrogenase; Provisional
Probab=54.82 E-value=74 Score=26.87 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+
T Consensus 4 ~~~k~~lItG-as~giG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 66 (254)
T PRK07478 4 LNGKVAIITG-ASSGIGRAAAKLFAREGA-KVVVGARRQAEL-DQLVAEIRAEG--GEAVALAGDVRD 66 (254)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCC
Confidence 3556777555 55777777653 576 799999998887 66666665544 257788888754
No 365
>PRK07774 short chain dehydrogenase; Provisional
Probab=54.67 E-value=85 Score=26.21 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=39.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|+.++.++... +...+.+...+ .++.++..|+.+
T Consensus 4 ~~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 66 (250)
T PRK07774 4 FDDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGA-ERVAKQIVADG--GTAIAVQVDVSD 66 (250)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCC
Confidence 3566777666 77888888764 565 799999998766 55554444322 246778888764
No 366
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=54.25 E-value=20 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=38.6
Q ss_pred EEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHH
Q 027179 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (227)
Q Consensus 160 LDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~ 222 (227)
+..|.||=.|+..+++. ..+.++.|+.+... +..++|+... .++++++.|.++.+..+
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~-~~L~~~~~~~---~~v~v~~~DG~~~l~al 119 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDF-EALKKNFRRD---RRVRVHHRDGYEGLKAL 119 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHH-HHHTTS--TT---S-EEEE-S-HHHHHHHH
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHH-HHHHHHhccC---CccEEEeCchhhhhhhh
Confidence 78899998888876644 56899999999999 8999887643 37999999999987653
No 367
>PRK07035 short chain dehydrogenase; Provisional
Probab=54.04 E-value=76 Score=26.70 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++ +.|+ +|+.++.++..+ +...+.+...+ .++.+++.|+.+
T Consensus 6 l~~k~vlItGa-s~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 68 (252)
T PRK07035 6 LTGKIALVTGA-SRGIGEAIAKLLAQQGA-HVIVSSRKLDGC-QAVADAIVAAG--GKAEALACHIGE 68 (252)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEcCCCC
Confidence 35667777764 466676655 3575 899999998877 66666554443 246777887744
No 368
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=53.93 E-value=74 Score=27.20 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|++ |.+|.+++ ..|+ +|+.++.+++.+ +.+.++++..+. ++.++.+|+.+
T Consensus 8 ~~~k~~lItGa~-~~iG~~ia~~l~~~G~-~vv~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~Dl~~ 70 (265)
T PRK07097 8 LKGKIALITGAS-YGIGFAIAKAYAKAGA-TIVFNDINQELV-DKGLAAYRELGI--EAHGYVCDVTD 70 (265)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcCC--ceEEEEcCCCC
Confidence 456788888865 45566554 3576 688999998887 676666665442 57888898854
No 369
>PRK06198 short chain dehydrogenase; Provisional
Probab=53.73 E-value=76 Score=26.76 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=38.6
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++++=.| |+|.+|..++ ..|+..|+.++.+++.. +.....+... ..++.++..|+.+
T Consensus 4 ~~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~~~~~l~~~--~~~~~~~~~D~~~ 67 (260)
T PRK06198 4 LDGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKG-EAQAAELEAL--GAKAVFVQADLSD 67 (260)
T ss_pred CCCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHHHHhc--CCeEEEEEccCCC
Confidence 4667888777 4666887665 35765599999987665 4434344322 2357778888753
No 370
>PRK08265 short chain dehydrogenase; Provisional
Probab=53.60 E-value=68 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++ ..|+ +|+.++.+++.. +...+ ..+ .++.++.+|+.+
T Consensus 4 ~~~k~vlItG-as~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~---~~~--~~~~~~~~Dl~~ 63 (261)
T PRK08265 4 LAGKVAIVTG-GATLIGAAVARALVAAGA-RVAIVDIDADNG-AAVAA---SLG--ERARFIATDITD 63 (261)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH---HhC--CeeEEEEecCCC
Confidence 4566777777 5667777765 3576 799999998755 33322 222 357788888854
No 371
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=52.55 E-value=55 Score=31.07 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
..+.+|+-+|+|-..+ +..+++...+|.+||+|+.-+ .+.+--+
T Consensus 62 g~ghrivtigSGGcn~-L~ylsr~Pa~id~VDlN~ahi-Aln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNM-LAYLSRAPARIDVVDLNPAHI-ALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchH-HHHhhcCCceeEEEeCCHHHH-HHHHHHH
Confidence 3678999999986533 334456556899999999766 5544333
No 372
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=52.15 E-value=70 Score=26.71 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=36.8
Q ss_pred eEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |+|.+|.+++. +|. +|++++.+++.. +.+...+...+ .++.++.+|+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGA-EAAAKVATDAG--GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEECCCCC
Confidence 445444 67888888764 465 799999988765 55554444333 358888888764
No 373
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.95 E-value=12 Score=36.10 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=51.4
Q ss_pred CCCCeEEEeccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas--~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|+|.||--|.=++.++. +...+++|+|.++.-. +..++-+...|.. .++.+.+|...
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~-~tl~~~l~~ag~~-~~~~~~~df~~ 275 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRA-ATLRKLLKIAGVS-IVESVEGDFLN 275 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHH-HHHHHHHHHcCCC-ccccccccccC
Confidence 4678999999999999988875 3346799999999998 8999999999885 46777888655
No 374
>PRK08303 short chain dehydrogenase; Provisional
Probab=51.46 E-value=63 Score=28.98 Aligned_cols=59 Identities=14% Similarity=-0.037 Sum_probs=36.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCH----------HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDP----------WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~----------~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|-.|+++ .||.+++. .|+ +|+.++.+. +.+ +.+.+.++..+ .++.++++|+.+
T Consensus 6 l~~k~~lITGgs~-GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~ 78 (305)
T PRK08303 6 LRGKVALVAGATR-GAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETI-EETAELVTAAG--GRGIAVQVDHLV 78 (305)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEecccccccccccccchH-HHHHHHHHhcC--CceEEEEcCCCC
Confidence 4677888888554 57777663 565 799888763 333 33333344333 346788888754
No 375
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.74 E-value=77 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=36.7
Q ss_pred CeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.|+ ||.+|..++. .|+ +|+++..++... +..+......+. ++.++.+|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~ 62 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGH-NVIAGVQIAPQV-TALRAEAARRGL--ALRVEKLDLTD 62 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--cceEEEeeCCC
Confidence 35666664 6778877653 465 799999887765 555554444443 47788888755
No 376
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=50.71 E-value=44 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH---cCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS---RGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas---~Ga--~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa 215 (227)
.++++|||+|+--|.=++.++. ... ..|+|=|.++.-+ .+.+.-+....- .++.+.+.|+
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~-~~~~v~~~~~ 218 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPS-PNLLVTNHDA 218 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCC-cceeeecccc
Confidence 5789999999999998865543 221 2799999999888 777766644432 2345555544
No 377
>PRK12829 short chain dehydrogenase; Provisional
Probab=50.53 E-value=84 Score=26.42 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|..++. .|. +|++++.+++.. +...+... +. ++.++.+|+.+
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~-~~~~~~~~--~~--~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEAGA-RVHVCDVSEAAL-AATAARLP--GA--KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHh--cC--ceEEEEccCCC
Confidence 46778998876 5778877654 466 699999988766 44433221 11 46788888654
No 378
>PRK08643 acetoin reductase; Validated
Probab=50.43 E-value=85 Score=26.47 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=37.8
Q ss_pred CeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.| |+|.+|.+++. .|+ +|+.++.+++.. +.+...+...+ .++.++.+|+.+
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGF-KVAIVDYNEETA-QAAADKLSKDG--GKAIAVKADVSD 62 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 3555445 66778877653 565 799999998776 66666665443 257788888754
No 379
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=49.91 E-value=94 Score=26.67 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=38.8
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|+.++.+++.. +...+.++..+ .++.++.+|+.+
T Consensus 8 ~~~k~vlVtGa-s~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 70 (278)
T PRK08277 8 LKGKVAVITGG-GGVLGGAMAKELARAGA-KVAILDRNQEKA-EAVVAEIKAAG--GEALAVKADVLD 70 (278)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 35667776664 456676655 3576 799999998776 55555554433 357888888754
No 380
>PRK05866 short chain dehydrogenase; Provisional
Probab=49.88 E-value=94 Score=27.49 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|++++.+++.+ +...+.+...+ .++.++.+|+.+
T Consensus 38 ~~~k~vlItGa-sggIG~~la~~La~~G~-~Vi~~~R~~~~l-~~~~~~l~~~~--~~~~~~~~Dl~d 100 (293)
T PRK05866 38 LTGKRILLTGA-SSGIGEAAAEQFARRGA-TVVAVARREDLL-DAVADRITRAG--GDAMAVPCDLSD 100 (293)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCCC
Confidence 34567776664 667787765 3565 799999998877 66655554433 247788888754
No 381
>PRK05717 oxidoreductase; Validated
Probab=49.45 E-value=83 Score=26.65 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=37.0
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|+.++.++... +...+. . ..++.++.+|+.+
T Consensus 8 ~~~k~vlItG-~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~-~~~~~~---~--~~~~~~~~~Dl~~ 67 (255)
T PRK05717 8 HNGRVALVTG-AARGIGLGIAAWLIAEGW-QVVLADLDRERG-SKVAKA---L--GENAWFIAMDVAD 67 (255)
T ss_pred cCCCEEEEeC-CcchHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHH---c--CCceEEEEccCCC
Confidence 5677888777 46778877663 565 799999887654 332222 1 2357788888765
No 382
>PRK08267 short chain dehydrogenase; Provisional
Probab=49.18 E-value=42 Score=28.51 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=35.8
Q ss_pred eEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |||.+|.+++. .|+ +|+.++.+++.+ +.+.+... ..++.++++|+.+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~----~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGW-RVGAYDINEAGL-AALAAELG----AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhc----CCceEEEEecCCC
Confidence 456666 55777777653 565 799999998877 55544332 2357888888864
No 383
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=49.16 E-value=96 Score=26.16 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.++.+++.+ +...+.++..+ .++.++.+|+.+
T Consensus 7 l~~k~~lItG-as~giG~~ia~~L~~~G~-~vvl~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~ 69 (254)
T PRK08085 7 LAGKNILITG-SAQGIGFLLATGLAEYGA-EIIINDITAERA-ELAVAKLRQEG--IKAHAAPFNVTH 69 (254)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEecCCCC
Confidence 3566777777 66778877664 465 799999998776 55555554433 246778888754
No 384
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=48.55 E-value=97 Score=31.37 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCC-------CCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGF-------LDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-------~~~v~~i~gDa~~~ 218 (227)
++++||=.| |+|.+|..++. .|. +|+++..+.+.+ +.+.+++...++ ..+++++.+|+.+.
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGF-RVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCH
Confidence 455566555 67888877653 464 799999998876 555555543221 13588999998753
No 385
>PRK06940 short chain dehydrogenase; Provisional
Probab=47.88 E-value=55 Score=28.54 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=34.5
Q ss_pred eEEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+|=-|+ |.||.+++. .| .+|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G-~~Vv~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~d 60 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAG-KKVLLADYNEENL-EAAAKTLREAG--FDVSTQEVDVSS 60 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCC-CEEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEeecCC
Confidence 4444443 578888764 35 4799999988766 55544444333 257788888744
No 386
>PRK09072 short chain dehydrogenase; Provisional
Probab=47.32 E-value=1.1e+02 Score=25.93 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=37.3
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++++|=.| |+|.+|.+++ .+|+ +|+.++.+++.+ +....-+ .. ..++.++.+|+.+
T Consensus 4 ~~~~vlItG-~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~-~~--~~~~~~~~~D~~d 64 (263)
T PRK09072 4 KDKRVLLTG-ASGGIGQALAEALAAAGA-RLLLVGRNAEKL-EALAARL-PY--PGRHRWVVADLTS 64 (263)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHH-hc--CCceEEEEccCCC
Confidence 456677666 4566776655 4575 799999998776 5544333 12 2468888888754
No 387
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.26 E-value=93 Score=26.30 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=37.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.++.+.+.. +...+.. ..++.++.+|+.+
T Consensus 4 l~~~~vlItG-as~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~-----~~~~~~~~~D~~~ 63 (257)
T PRK07067 4 LQGKVALLTG-AASGIGEAVAERYLAEGA-RVVIADIKPARA-RLAALEI-----GPAAIAVSLDVTR 63 (257)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHHh-----CCceEEEEccCCC
Confidence 3456777666 67788887764 465 799999998776 4433222 2347788888743
No 388
>PRK06720 hypothetical protein; Provisional
Probab=46.99 E-value=1.2e+02 Score=25.07 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
.+++.+|-.|++. .+|.+++ ..|+ +|+.+|.++... +.+.+.+...+ .+..++..|+.
T Consensus 14 l~gk~~lVTGa~~-GIG~aia~~l~~~G~-~V~l~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~ 75 (169)
T PRK06720 14 LAGKVAIVTGGGI-GIGRNTALLLAKQGA-KVIVTDIDQESG-QATVEEITNLG--GEALFVSYDME 75 (169)
T ss_pred cCCCEEEEecCCC-hHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCC
Confidence 3566777777654 4555544 4565 799999988876 55555554333 24667788874
No 389
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=46.87 E-value=54 Score=30.34 Aligned_cols=53 Identities=17% Similarity=0.009 Sum_probs=34.7
Q ss_pred CCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE----EEEEccHHHH
Q 027179 165 GTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS----SIHTVRVETF 218 (227)
Q Consensus 165 GTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v----~~i~gDa~~~ 218 (227)
|+|+||-++.+ .+..+++.+|.|+..+ -..++.+....-..++ ..+.+|+.+.
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l-~~l~~~l~~~~~~~~v~~~~~~vigDvrd~ 66 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKL-YELERELRSRFPDPKVRFEIVPVIGDVRDK 66 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHH-HHHHHHCHHHC--TTCEEEEE--CTSCCHH
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHH-HHHHHHHhhcccccCcccccCceeecccCH
Confidence 88999999875 3668999999999998 6777766433212223 4568888664
No 390
>PRK05650 short chain dehydrogenase; Provisional
Probab=46.56 E-value=99 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=37.1
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |||.+|.+++ +.|. +|+.++.+++.. +.+.+.++..+ .++.++.+|+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGW-RLALADVNEEGG-EETLKLLREAG--GDGFYQRCDVRD 60 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCC
Confidence 455555 5777777765 3565 799999998776 66555555443 357888888754
No 391
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=46.45 E-value=55 Score=28.69 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=36.0
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++||=.| |||.+|-.++. .|. +|+++..++... ..........+..++++++.+|+.+
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGY-TVKATVRDPNDP-KKTEHLLALDGAKERLHLFKANLLE 66 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCC-EEEEEEcCCCch-hhHHHHHhccCCCCceEEEeccccC
Confidence 356777666 48999888764 454 788888765432 2222211111222468899998865
No 392
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=46.26 E-value=64 Score=28.48 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=37.1
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+++||=.| |+|.+|-.++. .|. +|+++..++... +.........+...+++++.+|+.+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDR-KKTDHLLALDGAKERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcch-hhHHHHHhccCCCCceEEEeCCCCCc
Confidence 456788777 68888887764 464 687777665543 32222111122224688899998653
No 393
>PRK08264 short chain dehydrogenase; Validated
Probab=45.81 E-value=78 Score=26.30 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |||.+|.+++. +|+.+|+.++.++... +. . .+++.++.+|+.+
T Consensus 4 ~~~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~-------~--~~~~~~~~~D~~~ 60 (238)
T PRK08264 4 IKGKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESV-TD-------L--GPRVVPLQLDVTD 60 (238)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhh-hh-------c--CCceEEEEecCCC
Confidence 3556777777 68888887663 5765799999887665 32 2 2357888888854
No 394
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=45.71 E-value=37 Score=30.29 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=26.4
Q ss_pred CeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
.+.+|.|||+|++.+... ...++.-|+|++.+
T Consensus 27 ~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li 58 (266)
T TIGR00571 27 NCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLI 58 (266)
T ss_pred CEEEEecCCcchhheeec---CcEEEEecCCHHHH
Confidence 489999999999998643 24588889999876
No 395
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.44 E-value=76 Score=27.33 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=36.6
Q ss_pred CCCCeEEEeccC-CCHHHHHHHH----cCCCEEEEEeCCH---HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSG-TGSVGIEAIS----RGCSEVHFVEMDP---WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsG-TG~isI~aas----~Ga~~V~aVEis~---~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|++ ++.+|.+++. .|+ +|+.++.+. +.+ +.+. +... ..++.++..|+.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~-~~~~---~~~~-~~~~~~~~~Dv~d 70 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEV-RELA---DTLE-GQESLLLPCDVTS 70 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHH-HHHH---HHcC-CCceEEEecCCCC
Confidence 467889999988 4888888764 575 688886542 333 2222 2221 2357788888854
No 396
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.20 E-value=1.3e+02 Score=24.86 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEE-eCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFV-EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aV-Eis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.| |||.+|.+++. .|+ +|+.+ +.+++.. +...+.+...+ .++.++.+|+.+
T Consensus 4 ~~~~ilI~G-asg~iG~~la~~l~~~g~-~v~~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 66 (247)
T PRK05565 4 MGKVAIVTG-ASGGIGRAIAELLAKEGA-KVVIAYDINEEAA-QELLEEIKEEG--GDAIAVKADVSS 66 (247)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 455677666 57888887753 465 68887 8888776 66555555433 357889888754
No 397
>PRK06196 oxidoreductase; Provisional
Probab=45.07 E-value=88 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++||=.| |+|.+|.+++. .|+ +|++++.+++.. +.+.+.+. ++.++.+|+.+
T Consensus 24 l~~k~vlITG-asggIG~~~a~~L~~~G~-~Vv~~~R~~~~~-~~~~~~l~------~v~~~~~Dl~d 82 (315)
T PRK06196 24 LSGKTAIVTG-GYSGLGLETTRALAQAGA-HVIVPARRPDVA-REALAGID------GVEVVMLDLAD 82 (315)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHhh------hCeEEEccCCC
Confidence 3567888777 56778887764 565 799999998765 44433332 25678888764
No 398
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=44.35 E-value=1.1e+02 Score=26.09 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++ ..|+ +|+.++.+++.+ +.+.+- . ..++.++++|+.+
T Consensus 4 ~~~k~vlVtGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~---~--~~~~~~~~~D~~~ 63 (263)
T PRK06200 4 LHGQVALITGG-GSGIGRALVERFLAEGA-RVAVLERSAEKL-ASLRQR---F--GDHVLVVEGDVTS 63 (263)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---h--CCcceEEEccCCC
Confidence 35678888885 566777655 3565 699999998766 443322 1 2357788888754
No 399
>PRK08589 short chain dehydrogenase; Validated
Probab=43.77 E-value=1.4e+02 Score=25.83 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|.+++ ..|+ +|+.++.+ ..+ +...+.++..+ .++.++.+|+.+
T Consensus 4 l~~k~vlItGa-s~gIG~aia~~l~~~G~-~vi~~~r~-~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 65 (272)
T PRK08589 4 LENKVAVITGA-STGIGQASAIALAQEGA-YVLAVDIA-EAV-SETVDKIKSNG--GKAKAYHVDISD 65 (272)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCc-HHH-HHHHHHHHhcC--CeEEEEEeecCC
Confidence 35667776665 456677765 3575 79999999 444 44444444433 357888888754
No 400
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.41 E-value=1.2e+02 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.| |+|.+|..+++ +|. +|+.++.++... +.....++..+ .++.++.+|+.+
T Consensus 4 ~~~~ilItG-asg~iG~~l~~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 65 (246)
T PRK05653 4 QGKTALVTG-ASRGIGRAIALRLAADGA-KVVIYDSNEEAA-EALAAELRAAG--GEARVLVFDVSD 65 (246)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCChhHH-HHHHHHHHhcC--CceEEEEccCCC
Confidence 456788666 48999888763 565 599999998776 54444443333 357788888753
No 401
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=42.83 E-value=1.2e+02 Score=25.31 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=35.0
Q ss_pred EEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 159 WLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 159 VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+|=.| |+|.+|.+++ ..|+ +|+.++.++... +...+.++..+ .++.++.+|+.+
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~ 60 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGF-AVAVADLNEETA-KETAKEINQAG--GKAVAYKLDVSD 60 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEcCCCC
Confidence 44445 5778887765 3575 799999987766 44444444433 357888888743
No 402
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=42.62 E-value=2.5e+02 Score=26.16 Aligned_cols=70 Identities=10% Similarity=-0.064 Sum_probs=44.5
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHHHHHHhhh
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~L~~~~~~ 225 (227)
..+..+|||+|+-.=+--++ .+| ..+-+.||++..-+ +-..+-+...-..-.+.-+++|....|..+.+.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL-~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASIL-RATATAILREYPGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHH-HHHHHHHHHhCCCCeEeehhhhHHHHHhcccCC
Confidence 46799999999987654433 233 35788999998766 333333322211113778889988877766543
No 403
>PRK07831 short chain dehydrogenase; Provisional
Probab=42.20 E-value=1.5e+02 Score=25.18 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=38.2
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~-ngl~~~v~~i~gDa~~ 217 (227)
+++++|=.|+....+|.+++ ..|+ +|+.++.+++.+ +...+.++. .+- .++.++.+|+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRL-GETADELAAELGL-GRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHhcCC-ceEEEEEccCCC
Confidence 45677777753224565544 3576 699999988876 666655544 221 357888888754
No 404
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=41.76 E-value=69 Score=28.89 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=29.7
Q ss_pred CCCCeEEEeccCCCHHHHHH---HH--cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEA---IS--RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~a---as--~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
..+++||=+|| |.+|+.+ ++ .|+.+|+++|.+++-+ +.+++
T Consensus 162 ~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSF 207 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhh
Confidence 35778988875 6777653 33 3566899999999887 77764
No 405
>PRK05855 short chain dehydrogenase; Validated
Probab=41.69 E-value=1.3e+02 Score=28.44 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=41.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
..+.++|=.| |+|.+|.+++. +|. +|+.++.+.... +.+.+.++..+. ++.++.+|+.+.
T Consensus 313 ~~~~~~lv~G-~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~Dv~~~ 376 (582)
T PRK05855 313 FSGKLVVVTG-AGSGIGRETALAFAREGA-EVVASDIDEAAA-ERTAELIRAAGA--VAHAYRVDVSDA 376 (582)
T ss_pred CCCCEEEEEC-CcCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--eEEEEEcCCCCH
Confidence 3456677555 57888887663 565 699999998877 665555554443 578888888653
No 406
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=41.11 E-value=1.5e+02 Score=24.73 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEe-CCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVE-MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVE-is~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|..++. +|+ +|+.+. .+++.. +...+-+...+ .++.+++.|+.+
T Consensus 4 ~~~~~~lItG-~s~~iG~~la~~l~~~g~-~v~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 67 (247)
T PRK12935 4 LNGKVAIVTG-GAKGIGKAITVALAQEGA-KVVINYNSSKEAA-ENLVNELGKEG--HDVYAVQADVSK 67 (247)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEcCCcHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 3567899898 68889988764 565 566554 344544 33333333333 357888888854
No 407
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.08 E-value=1.7e+02 Score=23.99 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEE-EeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHF-VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~a-VEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
..+++|=.| |||.+|.+++. +|. +|+. +..+.... +...+.....+ .++.++.+|+.
T Consensus 5 ~~~~vlItG-asg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~D~~ 66 (249)
T PRK12825 5 MGRVALVTG-AARGLGRAIALRLARAGA-DVVVHYRSDEEAA-EELVEAVEALG--RRAQAVQADVT 66 (249)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCC-eEEEEeCCCHHHH-HHHHHHHHhcC--CceEEEECCcC
Confidence 456788666 58889988764 465 4555 44455554 44444444333 35788888884
No 408
>PRK07201 short chain dehydrogenase; Provisional
Probab=40.88 E-value=1.3e+02 Score=29.52 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |||.+|.+++. .|+ +|++++.+++.+ +...+.+...+ .++.++.+|+.+
T Consensus 369 ~~~k~vlItG-as~giG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~ 431 (657)
T PRK07201 369 LVGKVVLITG-ASSGIGRATAIKVAEAGA-TVFLVARNGEAL-DELVAEIRAKG--GTAHAYTCDLTD 431 (657)
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEecCCC
Confidence 3456677655 56788887763 575 799999998876 55555444333 358888888754
No 409
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.80 E-value=76 Score=27.01 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=35.7
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |+|.+|.+++ .+|+ +|+.++.++..+ +.+.+.++..+ ++.++.+|+.+
T Consensus 2 ~vlItG-as~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~---~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTA-SSRGIGFNVARELLKKGA-RVVISSRNEENL-EKALKELKEYG---EVYAVKADLSD 59 (259)
T ss_pred eEEEEc-CCcHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC---CceEEEcCCCC
Confidence 355556 4566777665 3576 799999998877 66655554432 46788888743
No 410
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.79 E-value=71 Score=27.44 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=36.5
Q ss_pred CCCCeEEEeccC-CCHHHHHHHH----cCCCEEEEEeCCH--HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSG-TGSVGIEAIS----RGCSEVHFVEMDP--WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsG-TG~isI~aas----~Ga~~V~aVEis~--~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+| ++.||.+++. .|+ +|+.++.+. +.+ +.+.+. .+ .++.++..|+.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~-~~~~~~---~~--~~~~~~~~Dv~~ 68 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLT-ERIAKR---LP--EPAPVLELDVTN 68 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHH-HHHHHh---cC--CCCcEEeCCCCC
Confidence 467789999986 7888888764 465 788888653 333 332222 22 245677888754
No 411
>PRK07024 short chain dehydrogenase; Provisional
Probab=40.55 E-value=91 Score=26.48 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=35.3
Q ss_pred eEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|=.| |+|.+|.+++. .|+ +|+.++.+++.+ +...+.+... .++.++.+|+.+
T Consensus 4 ~vlItG-as~gIG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFITG-ASSGIGQALAREYARQGA-TLGLVARRTDAL-QAFAARLPKA---ARVSVYAADVRD 61 (257)
T ss_pred EEEEEc-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHhcccC---CeeEEEEcCCCC
Confidence 555555 47788877663 565 799999998776 5444333221 157888888754
No 412
>PRK06114 short chain dehydrogenase; Provisional
Probab=40.32 E-value=1.5e+02 Score=25.06 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHH-HHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPW-VVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~-Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|+.++.+.. .+ +...+.++..+ .++.++.+|+.+
T Consensus 6 ~~~k~~lVtG-~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 69 (254)
T PRK06114 6 LDGQVAFVTG-AGSGIGQRIAIGLAQAGA-DVALFDLRTDDGL-AETAEHIEAAG--RRAIQIAADVTS 69 (254)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHHHHHHHhcC--CceEEEEcCCCC
Confidence 4667788776 66678887764 465 7899987643 33 44444554433 357788888754
No 413
>PLN02740 Alcohol dehydrogenase-like
Probab=40.25 E-value=83 Score=28.86 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
..+++||=.|+ |.+|+.++ + .|+.+|+++|.+++-. +.+++
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKF-EKGKE 241 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHH
Confidence 35678887754 78887654 2 5776799999998887 77653
No 414
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=40.21 E-value=1.5e+02 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.4
Q ss_pred CCCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.++.+||..|+|+ |...+.+++ .| .+|++++.+++.. +.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~-~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKL-ELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHH-HHHHH
Confidence 3577999999886 444444444 36 5899999998776 66543
No 415
>PRK05872 short chain dehydrogenase; Provisional
Probab=40.08 E-value=1.3e+02 Score=26.37 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=37.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++. .|+ +|+.++.+++.+ +...+.+ +-..++..+.+|+.+
T Consensus 7 l~gk~vlItG-as~gIG~~ia~~l~~~G~-~V~~~~r~~~~l-~~~~~~l---~~~~~~~~~~~Dv~d 68 (296)
T PRK05872 7 LAGKVVVVTG-AARGIGAELARRLHARGA-KLALVDLEEAEL-AALAAEL---GGDDRVLTVVADVTD 68 (296)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHh---cCCCcEEEEEecCCC
Confidence 4677888776 55677777663 575 799999998876 5444333 212245566677654
No 416
>PRK07985 oxidoreductase; Provisional
Probab=38.74 E-value=75 Score=28.08 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=35.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCH--HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDP--WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~--~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|-.|+ +|.+|.+++. .|+ +|+.++.+. +.. +.+.+.++..+ .++.++.+|+.+
T Consensus 47 ~~~k~vlITGa-s~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 111 (294)
T PRK07985 47 LKDRKALVTGG-DSGIGRAAAIAYAREGA-DVAISYLPVEEEDA-QDVKKIIEECG--RKAVLLPGDLSD 111 (294)
T ss_pred cCCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEecCCcchhhH-HHHHHHHHHcC--CeEEEEEccCCC
Confidence 46778998884 5677776653 575 688876542 233 33333333333 246778888754
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=38.71 E-value=74 Score=32.63 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=30.1
Q ss_pred CeEEEeccCCCHHHH--HHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 157 GRWLDLYSGTGSVGI--EAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 157 ~~VLDLgsGTG~isI--~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.+|.=+|+|+=.-+| .++..|. .|+.+|.+++++ +.+++.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l-~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKAL-DLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHH-HHHHHHHH
Confidence 478888888833344 3455675 799999999998 77665543
No 418
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.68 E-value=1.8e+02 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHH-HHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPW-VVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~-Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|-.|+ +|.+|..++. .|. +|+++..+.. .. +.....++..+ .++.++.+|+.+
T Consensus 4 ~~~k~vlItGa-sggiG~~l~~~l~~~G~-~V~~~~r~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 67 (248)
T PRK07806 4 LPGKTALVTGS-SRGIGADTAKILAGAGA-HVVVNYRQKAPRA-NKVVAEIEAAG--GRASAVGADLTD 67 (248)
T ss_pred CCCcEEEEECC-CCcHHHHHHHHHHHCCC-EEEEEeCCchHhH-HHHHHHHHhcC--CceEEEEcCCCC
Confidence 45678887774 5667777653 465 6888877643 33 33333333333 357788888754
No 419
>PRK08226 short chain dehydrogenase; Provisional
Probab=38.67 E-value=1.8e+02 Score=24.55 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=37.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|..++. .|+ +|+.++.+.... +.+.+ +...+ .++.++.+|+.+
T Consensus 4 ~~~~~~lItG~-s~giG~~la~~l~~~G~-~Vv~~~r~~~~~-~~~~~-~~~~~--~~~~~~~~Dl~~ 65 (263)
T PRK08226 4 LTGKTALITGA-LQGIGEGIARVFARHGA-NLILLDISPEIE-KLADE-LCGRG--HRCTAVVADVRD 65 (263)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHH-HHHhC--CceEEEECCCCC
Confidence 45678886664 6777877663 575 699999887644 33332 22223 357788888854
No 420
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=38.29 E-value=98 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.++++||=.| .|.+|+.++ + .|+.+|+++|.+++.. +.+++
T Consensus 119 ~~g~~VlV~G--~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVG--AGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALS 163 (280)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH
Confidence 3567887775 467876654 2 4776799999998876 66554
No 421
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=38.22 E-value=42 Score=34.60 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=27.0
Q ss_pred CCCeEEEeccCCCHHHHHHHHc-CC-CEEEEEeCCH
Q 027179 155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDP 188 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~-Ga-~~V~aVEis~ 188 (227)
+...||||||--|++---|+.. +. .-|++||+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 5678999999999998877653 32 4699999866
No 422
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=37.91 E-value=98 Score=26.34 Aligned_cols=57 Identities=7% Similarity=-0.091 Sum_probs=36.0
Q ss_pred eEEEeccCCCHHHHHHHH--------cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS--------RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas--------~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+|-.|+ +|.+|.+++. .|+ +|+.+..+++.+ +.+.+.++...-..++.++.+|+.+
T Consensus 2 ~vlItGa-s~GIG~~~a~~la~~~~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 2 VCLVTGA-SRGFGRTIAQELAKCLKSPGS-VLVLSARNDEAL-RQLKAEIGAERSGLRVVRVSLDLGA 66 (256)
T ss_pred EEEEecC-CCchHHHHHHHHHHhhccCCc-EEEEEEcCHHHH-HHHHHHHHhcCCCceEEEEEeccCC
Confidence 3555664 4667766553 354 799999998877 6666655542112257788888754
No 423
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=37.74 E-value=47 Score=30.92 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=18.9
Q ss_pred CCCeEEEeccCCCHHHHHHHHcCCCEEEEEeC
Q 027179 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEi 186 (227)
.+..|.|+|||-+-++. +.. ..|+..|.
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~-~kV~SfDL 207 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SER-HKVHSFDL 207 (325)
T ss_pred CceEEEecccchhhhhh---ccc-cceeeeee
Confidence 45689999999998875 221 23555555
No 424
>PRK07791 short chain dehydrogenase; Provisional
Probab=37.10 E-value=1.6e+02 Score=25.71 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=35.9
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCH---------HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDP---------WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~---------~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|++ +.||.+++ ..|+ +|+.++.+. +.+ +.+.+.++..+ .++.++..|+.+
T Consensus 4 l~~k~~lITGas-~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~ 75 (286)
T PRK07791 4 LDGRVVIVTGAG-GGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAA-QAVVDEIVAAG--GEAVANGDDIAD 75 (286)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHH-HHHHHHHHhcC--CceEEEeCCCCC
Confidence 456788888855 45666554 4576 688888764 444 34444444333 256778888754
No 425
>PRK08324 short chain dehydrogenase; Validated
Probab=36.68 E-value=1.4e+02 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=38.1
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.| |+|.+|..++. .|+ +|+.+|.++... +.+.+.+... .++.++.+|+.+
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga-~Vvl~~r~~~~~-~~~~~~l~~~---~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGA-CVVLADLDEEAA-EAAAAELGGP---DRALGVACDVTD 481 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcC-EEEEEeCCHHHH-HHHHHHHhcc---CcEEEEEecCCC
Confidence 456777665 46778877653 576 799999999876 5554433222 357888888743
No 426
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=36.63 E-value=24 Score=32.56 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=32.9
Q ss_pred CCeEEEeccCCCHHH--HHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 156 PGRWLDLYSGTGSVG--IEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 156 ~~~VLDLgsGTG~is--I~aas~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
.-+|+++++|.|.+- ++.+...+.-|.|+|+|+.|- ++-.-|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvAN-evY~~N 46 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVAN-EVYAHN 46 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHH-HHHhcC
Confidence 458999999999874 444445667799999999986 777766
No 427
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.61 E-value=82 Score=28.00 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=25.3
Q ss_pred eEEEeccCCCHHHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAI--SRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa--s~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
+|.=+|+|+=.-+++.. ..|. +|+.+|.+++.+ +.+++++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l-~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEAL-EKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHH
Confidence 45556665433333322 3454 799999999988 7777654
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.56 E-value=46 Score=32.30 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar 196 (227)
|||.+|+..+ ..|. +|++||+++.-+ +.++
T Consensus 7 GtGYVGLv~g~~lA~~GH-eVv~vDid~~KV-~~ln 40 (414)
T COG1004 7 GTGYVGLVTGACLAELGH-EVVCVDIDESKV-ELLN 40 (414)
T ss_pred CCchHHHHHHHHHHHcCC-eEEEEeCCHHHH-HHHh
Confidence 8888887643 3464 799999999887 6544
No 429
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=36.28 E-value=46 Score=32.69 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=31.7
Q ss_pred ccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 163 YSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 163 gsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
=||.|.+|-.++. +| ..|+.||.|++.+ +.+++ .+ +.+++||+.+
T Consensus 422 I~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~-~~~~~----~g----~~~i~GD~~~ 470 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRV-DELRE----RG----IRAVLGNAAN 470 (558)
T ss_pred EECCChHHHHHHHHHHHCC-CCEEEEECCHHHH-HHHHH----CC----CeEEEcCCCC
Confidence 3788888888774 34 4699999999988 66653 12 4567777653
No 430
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=35.95 E-value=1.8e+02 Score=25.73 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.| |+|.||.+++. .|+ +|+.++.+++.. +.+.+.+... ..++.++..|+.+
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~-~V~~~~r~~~~~-~~~~~~l~~~--~~~~~~~~~Dl~~ 66 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGW-HVIMACRNLKKA-EAAAQELGIP--PDSYTIIHIDLGD 66 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhhcc--CCceEEEEecCCC
Confidence 456777776 56778877664 564 799999988766 5544444322 2357888888754
No 431
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=35.65 E-value=83 Score=30.28 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=36.6
Q ss_pred CeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++||=||| |.+|-.++ +++..+|+..|.+++.+ +.+..+.. .+++.++-|+.+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~-~~i~~~~~-----~~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKC-ARIAELIG-----GKVEALQVDAAD 58 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHhhcc-----ccceeEEecccC
Confidence 35788888 66665554 35667899999999887 66554432 157777777764
No 432
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.44 E-value=1.5e+02 Score=25.28 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=36.8
Q ss_pred CCCCeEEEeccCC-CHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+++ +.+|.+++. .|+ +|+.++.+.... +.+++. .+ .++.+++.|+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~-~~~~~~---~~--~~~~~~~~Dl~~ 66 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMK-KSLQKL---VD--EEDLLVECDVAS 66 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHH-HHHHhh---cc--CceeEEeCCCCC
Confidence 4678899899875 677777653 575 688888775443 333322 11 246788888854
No 433
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=35.34 E-value=41 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCeEEEeccCCCHH-HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 027179 154 LRPGRWLDLYSGTGSV-GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~i-sI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ng 203 (227)
..+...+|+|+..|.+ ||++-.-..++++++|.=.++- ...|-|++.|+
T Consensus 78 khdttyidiganvgtfcgiaarhitqgkiiaieplteme-nsirmnvqlnn 127 (286)
T PF05575_consen 78 KHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEME-NSIRMNVQLNN 127 (286)
T ss_pred cCCceEEEeccccccchhhhhhhcccCceEEEechhhhh-hheeeeeeeCC
Confidence 3567899999999998 5654333445799999888886 77888888775
No 434
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.27 E-value=1.7e+02 Score=25.42 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCCCeEEEeccCC-CHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+++ +.||.+++ ..|+ +|+.++.+.... +..++-.+..+. ...+++|+.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~-~~~~~~~~~~g~---~~~~~~Dv~d 68 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALG-KRVKPLAESLGS---DFVLPCDVED 68 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHH-HHHHHHHHhcCC---ceEEeCCCCC
Confidence 4567899999876 25565554 4676 688888776443 333333232231 2467788754
No 435
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=35.11 E-value=98 Score=31.69 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.1
Q ss_pred CeEEEeccCC--CHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 157 GRWLDLYSGT--GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 157 ~~VLDLgsGT--G~isI~aa-s~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.+|.=+|+|+ ..|+..++ ..|. .|+.+|.+++++ +.++++++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l-~~~~~~~~ 354 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGI-NHALKYSW 354 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHH
Confidence 5788888887 34444445 3464 799999999988 77766554
No 436
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=34.67 E-value=1.1e+02 Score=27.52 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar 196 (227)
..+++||=.|+ |.+|+.++ + .|+.+|+++|.++.-. +.++
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~ 218 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAR 218 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH
Confidence 35678887754 67776553 3 4776799999998877 6664
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=34.63 E-value=69 Score=29.92 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCeEEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
...+++=+ |.|.+|..++. .....|+.||.+++.+ +.+++.. ..+.++.||+.
T Consensus 230 ~~~~iiIi--G~G~~g~~l~~~L~~~~~~v~vid~~~~~~-~~~~~~~------~~~~~i~gd~~ 285 (453)
T PRK09496 230 PVKRVMIV--GGGNIGYYLAKLLEKEGYSVKLIERDPERA-EELAEEL------PNTLVLHGDGT 285 (453)
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHC------CCCeEEECCCC
Confidence 34566655 45778777664 2224799999999987 6555421 13567777774
No 438
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.46 E-value=1.1e+02 Score=25.85 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=30.9
Q ss_pred cCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 164 SGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 164 sGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
-|||.+|.+++. .|+ +|+.++.++..+ +...+.+ + .++.++.+|+.+
T Consensus 7 Gasg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~---~--~~~~~~~~Dl~~ 57 (248)
T PRK10538 7 GATAGFGECITRRFIQQGH-KVIATGRRQERL-QELKDEL---G--DNLYIAQLDVRN 57 (248)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh---c--cceEEEEecCCC
Confidence 367777877663 465 799999998766 4443322 2 247788888754
No 439
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=34.41 E-value=93 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas~Ga~~V~aVEis~~Al 191 (227)
.++...+|||+--|..+--+.+++- .|++||--+-|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~ 246 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQ 246 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhh
Confidence 3678999999999999999888874 799999766554
No 440
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.19 E-value=2.2e+02 Score=23.76 Aligned_cols=57 Identities=12% Similarity=-0.053 Sum_probs=35.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++. .|+ +|+.++.++. +.+.+.++..+ .++.++.+|+.+
T Consensus 3 ~~~k~vlItGa-s~gIG~~ia~~l~~~G~-~vi~~~r~~~---~~~~~~~~~~~--~~~~~~~~D~~~ 63 (248)
T TIGR01832 3 LEGKVALVTGA-NTGLGQGIAVGLAEAGA-DIVGAGRSEP---SETQQQVEALG--RRFLSLTADLSD 63 (248)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEcCchH---HHHHHHHHhcC--CceEEEECCCCC
Confidence 46778888886 4567777663 565 7999987652 22233333332 357888888754
No 441
>PRK07825 short chain dehydrogenase; Provisional
Probab=34.10 E-value=1.7e+02 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=34.6
Q ss_pred CCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++++|=.|+ ||.+|.+++ .+|+ +|+.++.+++.+ +.+.+.+. ++.++.+|+.+
T Consensus 4 ~~~~ilVtGa-sggiG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~------~~~~~~~D~~~ 61 (273)
T PRK07825 4 RGKVVAITGG-ARGIGLATARALAALGA-RVAIGDLDEALA-KETAAELG------LVVGGPLDVTD 61 (273)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhc------cceEEEccCCC
Confidence 4567776665 567777765 3575 699999988776 44333221 35677777653
No 442
>PRK07775 short chain dehydrogenase; Provisional
Probab=34.05 E-value=2.2e+02 Score=24.46 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=38.4
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+.+.+|=.| |+|.+|.+++. .|+ +|+.+..++... +...+++...+ .++.++.+|+.+
T Consensus 9 ~~~~vlVtG-a~g~iG~~la~~L~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 70 (274)
T PRK07775 9 DRRPALVAG-ASSGIGAATAIELAAAGF-PVALGARRVEKC-EELVDKIRADG--GEAVAFPLDVTD 70 (274)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCC
Confidence 345677666 57888888764 565 788888887765 54444444333 357888888764
No 443
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=33.93 E-value=76 Score=28.85 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEeccC-CCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 138 GAAFDILQSAGGCPASLRPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 138 ealf~~L~~~~~~~~~~~~~~VLDLgsG-TG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.++..|+... +-+++|=+|++ ||++--..++..+ +|+.||+.|... +....|++
T Consensus 31 ~ai~~~le~~-------~~k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk-~ll~~~i~ 85 (252)
T PF06690_consen 31 NAIKYWLEGE-------EFKQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLK-ELLNENIK 85 (252)
T ss_pred HHHHHHhccc-------ccceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHH-HHhcCCCc
Confidence 3455666542 33488888888 4554444455555 899999999987 77655553
No 444
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.61 E-value=2.1e+02 Score=25.41 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=36.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCC-HHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis-~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|++ |.+|.+++ ..|+ +|+.+|.+ .... +...+.++..+ .++.++.+|+.+
T Consensus 10 l~~k~~lVTGas-~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~-~~~~~~i~~~g--~~~~~~~~Dv~d 73 (306)
T PRK07792 10 LSGKVAVVTGAA-AGLGRAEALGLARLGA-TVVVNDVASALDA-SDVLDEIRAAG--AKAVAVAGDISQ 73 (306)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEecCCchhHH-HHHHHHHHhcC--CeEEEEeCCCCC
Confidence 567788877765 45666554 4676 68888874 3333 34444444333 357888888754
No 445
>PRK12744 short chain dehydrogenase; Provisional
Probab=33.59 E-value=2.5e+02 Score=23.70 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCC----HHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis----~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.+..+ .+.. +...+.++..+ .++.++..|+.+
T Consensus 6 l~~k~vlItG-a~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~ 72 (257)
T PRK12744 6 LKGKVVLIAG-GAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADA-EETVAAVKAAG--AKAVAFQADLTT 72 (257)
T ss_pred CCCcEEEEEC-CCchHHHHHHHHHHHCCC-cEEEEecCCccchHHH-HHHHHHHHHhC--CcEEEEecCcCC
Confidence 3567888777 57778888764 465 45666432 2333 33333333333 257888988854
No 446
>PLN02650 dihydroflavonol-4-reductase
Probab=33.23 E-value=1.5e+02 Score=26.64 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=36.2
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++||=.| |||.+|-.++. .|. +|++++.++... .....-....+...+++++.+|+.+
T Consensus 4 ~~k~iLVTG-atGfIGs~l~~~L~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~v~~Dl~d 67 (351)
T PLN02650 4 QKETVCVTG-ASGFIGSWLVMRLLERGY-TVRATVRDPANV-KKVKHLLDLPGATTRLTLWKADLAV 67 (351)
T ss_pred CCCEEEEeC-CcHHHHHHHHHHHHHCCC-EEEEEEcCcchh-HHHHHHHhccCCCCceEEEEecCCC
Confidence 445666555 78899887764 454 799888876554 3322211112222357889999865
No 447
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=33.10 E-value=2.2e+02 Score=28.92 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.| |+|.+|.+++. .|+ +|+.++.+.+.. +...+.+....-.+++.++++|+.+
T Consensus 412 l~gkvvLVTG-asggIG~aiA~~La~~Ga-~Vvi~~r~~~~~-~~~~~~l~~~~~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 412 LARRVAFVTG-GAGGIGRETARRLAAEGA-HVVLADLNLEAA-EAVAAEINGQFGAGRAVALKMDVTD 476 (676)
T ss_pred CCCCEEEEeC-CCcHHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhhcCCCcEEEEECCCCC
Confidence 4567777666 46788887663 575 799999998876 5554444322112346788888754
No 448
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=33.03 E-value=1.3e+02 Score=27.41 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=28.7
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
..+++||=.|+ |.+|+.++ + .|+.+|+++|.+++.. +.+++
T Consensus 184 ~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~-~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKF-ELAKK 228 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH
Confidence 35677777764 67776543 3 4776899999998887 66643
No 449
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=32.50 E-value=3.7e+02 Score=24.04 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=44.7
Q ss_pred CCCCeEEEeccCCC---HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-CCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGTG---~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~~ngl-~~~v~~i~gDa~ 216 (227)
..++.+|=-|+.+| .+...++..|+ +|+..+.+++.+ +.+++-+...+. ..++..+.+|+.
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~ 70 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERL-EETAQELGGLGYTGGKVLAIVCDVS 70 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCCCeeEEEECcCC
Confidence 56778888887776 44566667787 799999999987 666666655554 256888888985
No 450
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.21 E-value=1.5e+02 Score=25.59 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=33.8
Q ss_pred CCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++|=.|+ +|.+|.+++. .|+ +|++++.+++.+ +.+.+ . .++++.+|+.+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~-~Vi~~~r~~~~~-~~l~~----~----~~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGW-RVFATCRKEEDV-AALEA----E----GLEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHH----C----CceEEEccCCC
Confidence 456776775 6788877663 465 799999998776 44332 1 25677777754
No 451
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=32.06 E-value=1.4e+02 Score=26.30 Aligned_cols=60 Identities=12% Similarity=-0.064 Sum_probs=34.7
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++||=.| |||.+|-.++. .|. +|+++-.+.... +...+-....+...+++++.+|+.+
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~ 67 (322)
T PLN02986 4 GGKLVCVTG-ASGYIASWIVKLLLLRGY-TVKATVRDLTDR-KKTEHLLALDGAKERLKLFKADLLE 67 (322)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEECCCcch-HHHHHHHhccCCCCceEEEecCCCC
Confidence 456666655 78899887654 464 688765554432 2222222222323468889998854
No 452
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.04 E-value=1e+02 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
|.|.+|..+| ..|. +|+.+|.+++.+ +.+.++
T Consensus 8 G~G~mG~~iA~~la~~G~-~V~~~d~~~~~~-~~~~~~ 43 (288)
T PRK09260 8 GAGVMGRGIAYVFAVSGF-QTTLVDIKQEQL-ESAQQE 43 (288)
T ss_pred CccHHHHHHHHHHHhCCC-cEEEEeCCHHHH-HHHHHH
Confidence 5566665544 3454 699999999998 776654
No 453
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.81 E-value=1.3e+02 Score=26.96 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=25.5
Q ss_pred eEEEeccCCCHHHH--HHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGI--EAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (227)
Q Consensus 158 ~VLDLgsGTG~isI--~aas~Ga~~V~aVEis~~Al~~~ar~N~ 199 (227)
+|-=+|+|+=.-+| .++..|. +|+.+|.+++++ +.+++.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~-~~~~~~i 48 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELA-TAGRNRI 48 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHHH
Confidence 56666665322222 2334564 799999999998 7765543
No 454
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=31.62 E-value=1.1e+02 Score=26.53 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=27.3
Q ss_pred CCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 027179 155 RPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 155 ~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~~Al~~~ar 196 (227)
.+.+||..++| .|...+.+|+ .|+ +|++++.+++.. +.++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~-~~~~ 206 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKL-ELAK 206 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHH
Confidence 56788887654 3555555565 465 699999998876 6654
No 455
>PRK06057 short chain dehydrogenase; Provisional
Probab=31.59 E-value=1.3e+02 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=26.7
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVV 191 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al 191 (227)
..+++||=.|+ +|.+|.+++. .|+ +|+.++.++...
T Consensus 5 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~v~~~~r~~~~~ 44 (255)
T PRK06057 5 LAGRVAVITGG-GSGIGLATARRLAAEGA-TVVVGDIDPEAG 44 (255)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 45678998886 5677877663 565 799999987665
No 456
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=31.30 E-value=31 Score=31.53 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=28.2
Q ss_pred CeEEEecc-CCCHHHHHHHHc-CCCEEEEEeCCHHHH
Q 027179 157 GRWLDLYS-GTGSVGIEAISR-GCSEVHFVEMDPWVV 191 (227)
Q Consensus 157 ~~VLDLgs-GTG~isI~aas~-Ga~~V~aVEis~~Al 191 (227)
.+|+=+|+ |.|++.++++.| |.++.+.||.|.-.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 45666665 689999999876 899999999987655
No 457
>PRK12743 oxidoreductase; Provisional
Probab=30.98 E-value=2.2e+02 Score=24.07 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=35.5
Q ss_pred CeEEEeccCCCHHHHHHHH----cCCCEEEEEe-CCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAIS----RGCSEVHFVE-MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas----~Ga~~V~aVE-is~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++|=.| |+|.+|.+++. .|+ +|+.+. .+.+.. +.+.+.++.++ .++.++.+|+.+
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~G~-~V~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 63 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQGF-DIGITWHSDEEGA-KETAEEVRSHG--VRAEIRQLDLSD 63 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCChHHH-HHHHHHHHhcC--CceEEEEccCCC
Confidence 4677777 46778888774 465 576664 455555 55555555554 357888888754
No 458
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=30.94 E-value=1.1e+02 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCCeEEEeccCC-CHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 027179 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 155 ~~~~VLDLgsGT-G~isI~aas-~Ga~~V~aVEis~~Al~~~ar 196 (227)
++.+||-.++|. |...+.+++ .|..+|++++.+++.. +.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHH
Confidence 677888877543 334444444 4765799999888776 5443
No 459
>PRK07832 short chain dehydrogenase; Provisional
Probab=30.94 E-value=1.4e+02 Score=25.57 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
|+|.+|.+++ ..|+ +|+.++.+++.. +...+.+...+- +.+.++.+|+.+
T Consensus 8 as~giG~~la~~la~~G~-~vv~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (272)
T PRK07832 8 AASGIGRATALRLAAQGA-ELFLTDRDADGL-AQTVADARALGG-TVPEHRALDISD 61 (272)
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC-CcceEEEeeCCC
Confidence 5677777765 3575 689999988776 655555544332 224556677643
No 460
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=30.58 E-value=1.4e+02 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
.+++||=.|+ |.+|+.++ + .|+.+|+++|.+++-. +.+++
T Consensus 191 ~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~ 234 (371)
T cd08281 191 PGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKL-ALARE 234 (371)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH
Confidence 4667777764 67776553 3 4776799999999887 66653
No 461
>PRK06101 short chain dehydrogenase; Provisional
Probab=30.55 E-value=1.2e+02 Score=25.59 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=32.3
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+|=.| |||.+|.+++ .+|+ +|+.++.+++.. +...+ .+ .++.++.+|+.+
T Consensus 3 ~vlItG-as~giG~~la~~L~~~G~-~V~~~~r~~~~~-~~~~~----~~--~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAKQGW-QVIACGRNQSVL-DELHT----QS--ANIFTLAFDVTD 57 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHH----hc--CCCeEEEeeCCC
Confidence 344344 5788887766 3565 699999998766 43322 11 246778888754
No 462
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.34 E-value=2.3e+02 Score=24.07 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=35.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|-.|+ +|.||.+++. .|+ +|+.++.++. +...+.++..+ .++.++.+|+.+
T Consensus 6 l~~k~~lItGa-s~gIG~aia~~l~~~G~-~vv~~~~~~~---~~~~~~~~~~~--~~~~~~~~Dl~~ 66 (251)
T PRK12481 6 LNGKVAIITGC-NTGLGQGMAIGLAKAGA-DIVGVGVAEA---PETQAQVEALG--RKFHFITADLIQ 66 (251)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEecCchH---HHHHHHHHHcC--CeEEEEEeCCCC
Confidence 45778888885 5677777653 565 6888876542 22233333333 357888888754
No 463
>PRK07041 short chain dehydrogenase; Provisional
Probab=30.26 E-value=1.5e+02 Score=24.34 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++|.+|..++ ..|+ +|+.++.+++.+ +...+.++. + .+++++.+|+.+
T Consensus 5 as~~iG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~-~--~~~~~~~~Dl~~ 56 (230)
T PRK07041 5 GSSGIGLALARAFAAEGA-RVTIASRSRDRL-AAAARALGG-G--APVRTAALDITD 56 (230)
T ss_pred CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHhc-C--CceEEEEccCCC
Confidence 5677777665 3565 699999988766 554444431 2 357788888754
No 464
>PRK07069 short chain dehydrogenase; Validated
Probab=30.16 E-value=1.6e+02 Score=24.53 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=28.3
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCC-HHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis-~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
|+|.+|.+++ .+|+ +|+.++.+ ++.+ +...+.+....-...+.++.+|+.
T Consensus 7 ~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~ 61 (251)
T PRK07069 7 AAGGLGRAIARRMAEQGA-KVFLTDINDAAGL-DAFAAEINAAHGEGVAFAAVQDVT 61 (251)
T ss_pred CCChHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHHHHHHHhcCCCceEEEEEeecC
Confidence 4666777655 3565 78898887 5555 555544433321222445666654
No 465
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=30.13 E-value=1.3e+02 Score=26.58 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=26.2
Q ss_pred CCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHH
Q 027179 155 RPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 155 ~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
++.+||-.++| .|...+.+|+ .|...|++++.++... +.+++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~ 210 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKE 210 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHH
Confidence 56788886653 2444455555 4655789998887665 55443
No 466
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.99 E-value=55 Score=29.25 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCCeEEEeccC-CCHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 154 LRPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 154 ~~~~~VLDLgsG-TG~isI~aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.+.+.+|=+|++ ||.+.-.+++. +.+|+.+|++|..- .....|++
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r-~~lp~~v~ 88 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMR-GFLPNNVK 88 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHH-hcCCCCcc
Confidence 467889999998 67777777766 56899999999886 66665554
No 467
>PRK06182 short chain dehydrogenase; Validated
Probab=29.77 E-value=1.7e+02 Score=25.04 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=33.2
Q ss_pred CCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+++++=.| |+|.+|.+++. .|+ +|++++.+++.+ +.... . +++++.+|+.+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~-~V~~~~r~~~~l-~~~~~----~----~~~~~~~Dv~~ 57 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGY-TVYGAARRVDKM-EDLAS----L----GVHPLSLDVTD 57 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHh----C----CCeEEEeeCCC
Confidence 45677666 56778888764 465 799999988766 43321 1 35677777754
No 468
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.77 E-value=2.6e+02 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=35.0
Q ss_pred CeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCH-HHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 157 GRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~-~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
+.+|=.| |+|.+|.+++. .|+ +|+.++.+. ... +...+.++..+ .++.++.+|+.+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~ 63 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGF-DLAINDRPDDEEL-AATQQELRALG--VEVIFFPADVAD 63 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEecCchhHH-HHHHHHHHhcC--CceEEEEecCCC
Confidence 3566566 68888887753 565 788888653 333 34444444333 357888888865
No 469
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=29.44 E-value=1.6e+02 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=36.6
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~G-a~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~~ 218 (227)
.+++||=.| |+|.+|-.++. .| ..+|++++.++... ....+.. . ..+++++.+|+.+.
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~~~~~---~-~~~~~~v~~Dl~d~ 65 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQ-WEMQQKF---P-APCLRFFIGDVRDK 65 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH-HHHHHHh---C-CCcEEEEEccCCCH
Confidence 456787666 57999988764 34 24799998776543 2222211 1 13588999998763
No 470
>PLN02583 cinnamoyl-CoA reductase
Probab=29.05 E-value=2.4e+02 Score=24.88 Aligned_cols=59 Identities=17% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHH-HHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVV-SNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al-~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++||=.| |||.+|-.++. +|. +|+++..+.... .....+.+ .+..++++++.+|+.+
T Consensus 5 ~~k~vlVTG-atG~IG~~lv~~Ll~~G~-~V~~~~R~~~~~~~~~~~~~l--~~~~~~~~~~~~Dl~d 68 (297)
T PLN02583 5 SSKSVCVMD-ASGYVGFWLVKRLLSRGY-TVHAAVQKNGETEIEKEIRGL--SCEEERLKVFDVDPLD 68 (297)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHhCCC-EEEEEEcCchhhhHHHHHHhc--ccCCCceEEEEecCCC
Confidence 455677665 57888877653 464 798887643221 01111111 1112358888898865
No 471
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=28.86 E-value=1.9e+02 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar 196 (227)
.++++||=+| .|.+|+.++ + .|+.+|++++.+++-. +.++
T Consensus 162 ~~g~~vlV~G--~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~ 205 (339)
T cd08239 162 SGRDTVLVVG--AGPVGLGALMLARALGAEDVIGVDPSPERL-ELAK 205 (339)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH
Confidence 3567777775 477877654 3 5776699999988776 6654
No 472
>PRK12828 short chain dehydrogenase; Provisional
Probab=28.83 E-value=2.6e+02 Score=22.82 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |||.+|..++. .|+ +|++++.++.-. ....+.+... .++++.+|+.+
T Consensus 5 ~~~k~vlItG-atg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~----~~~~~~~D~~~ 65 (239)
T PRK12828 5 LQGKVVAITG-GFGGLGRATAAWLAARGA-RVALIGRGAAPL-SQTLPGVPAD----ALRIGGIDLVD 65 (239)
T ss_pred CCCCEEEEEC-CCCcHhHHHHHHHHHCCC-eEEEEeCChHhH-HHHHHHHhhc----CceEEEeecCC
Confidence 3566777777 55777877653 565 699999987654 3222222221 24566677643
No 473
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=28.67 E-value=50 Score=32.21 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVL 195 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~a 195 (227)
|-|.+|+..| ++|. +|+++|+|+..+ +..
T Consensus 16 GLGYVGLPlA~~fA~~G~-~ViG~DIn~~~V-d~l 48 (436)
T COG0677 16 GLGYVGLPLAAAFASAGF-KVIGVDINQKKV-DKL 48 (436)
T ss_pred ccccccHHHHHHHHHcCC-ceEeEeCCHHHH-HHH
Confidence 6677777765 3564 699999999988 543
No 474
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.58 E-value=2.6e+02 Score=24.44 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=35.5
Q ss_pred CCCeEEEeccCC-CHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 155 RPGRWLDLYSGT-GSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 155 ~~~~VLDLgsGT-G~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.++.+|=.|+++ +.||.+++ ..|+ +|+.++.+.+.. +.+++-.+..+. + .++.+|+.+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~-~~~~~~~~~~~~--~-~~~~~Dv~d 66 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALK-KRVEPIAQELGS--D-YVYELDVSK 66 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHH-HHHHHHHHhcCC--c-eEEEecCCC
Confidence 567888888763 56776665 3576 788888886433 333333333332 2 467778765
No 475
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.24 E-value=74 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 164 SGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 164 sGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
||-|.+|-..+. .| ..++.+|.|++.+ +.+++ .| ..++.||+.+
T Consensus 406 ~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v-~~~~~----~g----~~v~~GDat~ 453 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHI-ETLRK----FG----MKVFYGDATR 453 (621)
T ss_pred EecChHHHHHHHHHHhCC-CCEEEEECCHHHH-HHHHh----cC----CeEEEEeCCC
Confidence 566677766653 34 3699999999998 77654 23 4678888754
No 476
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.84 E-value=76 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=31.9
Q ss_pred cCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 164 SGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 164 sGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
||-|.+|-.+++ .| .+++.+|.|++.+ +.+++ .| ..++.||+.+
T Consensus 406 ~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v-~~~~~----~g----~~v~~GDat~ 453 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANK-MRITVLERDISAV-NLMRK----YG----YKVYYGDATQ 453 (601)
T ss_pred ecCchHHHHHHHHHHhCC-CCEEEEECCHHHH-HHHHh----CC----CeEEEeeCCC
Confidence 788888887764 34 4799999999998 76653 23 4577777753
No 477
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=27.82 E-value=2.3e+02 Score=25.25 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=35.5
Q ss_pred CCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 156 PGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 156 ~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
++++|=.| |++.+|.+++ ..|+.+|+.+..+++.. +.+.+.+... ..++.++..|+.+
T Consensus 3 ~k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~~~~-~~~~~~l~~~--~~~~~~~~~Dl~~ 64 (314)
T TIGR01289 3 KPTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDFLKA-EQAAKSLGMP--KDSYTIMHLDLGS 64 (314)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHhcCC--CCeEEEEEcCCCC
Confidence 34667666 4556677655 35734799998888766 5444433321 2357788888743
No 478
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=27.79 E-value=3.2e+02 Score=22.97 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.| |+|.+|.+++ .+|+ +|+.++.++.. +...+.+...+ .++.++.+|+.+
T Consensus 6 ~~~k~vlVtG-as~gIG~~la~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~D~~~ 67 (260)
T PRK12823 6 FAGKVVVVTG-AAQGIGRGVALRAAAEGA-RVVLVDRSELV--HEVAAELRAAG--GEALALTADLET 67 (260)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCchHH--HHHHHHHHhcC--CeEEEEEEeCCC
Confidence 4567788777 5566676665 3565 79999988643 33334443333 246778888754
No 479
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.78 E-value=1.4e+02 Score=26.50 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=23.3
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
+|.=+|+| .+|..++ ..|. +|+.+|.+++.+ +.+.++
T Consensus 6 kI~vIGaG--~mG~~iA~~la~~G~-~V~l~d~~~~~~-~~~~~~ 46 (292)
T PRK07530 6 KVGVIGAG--QMGNGIAHVCALAGY-DVLLNDVSADRL-EAGLAT 46 (292)
T ss_pred EEEEECCc--HHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHH
Confidence 45545554 4444333 3454 799999999987 765543
No 480
>PRK06701 short chain dehydrogenase; Provisional
Probab=27.76 E-value=2.9e+02 Score=24.28 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=36.4
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHH-HHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-VVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~-Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+++++|=.|+ +|.+|.+++ +.|+ +|+.++.++. .. +.....++..+ .++.++.+|+.+
T Consensus 44 ~~~k~iLItGa-sggIG~~la~~l~~~G~-~V~l~~r~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~ 107 (290)
T PRK06701 44 LKGKVALITGG-DSGIGRAVAVLFAKEGA-DIAIVYLDEHEDA-NETKQRVEKEG--VKCLLIPGDVSD 107 (290)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHHHHHHHhcC--CeEEEEEccCCC
Confidence 46778888885 666677665 3565 6888887643 23 33333333333 357788888743
No 481
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=27.76 E-value=72 Score=29.47 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEeccCCCHHHHHHHHc-C-CCEEEEEeCCHHHH
Q 027179 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVV 191 (227)
Q Consensus 131 Ptte~v~ealf~~L~~~~~~~~~~~~~~VLDLgsGTG~isI~aas~-G-a~~V~aVEis~~Al 191 (227)
|-...++..++.=+.+-- -.++.+||=||+++|.---....- | ..-|++||.++++=
T Consensus 136 PfrSKLAA~I~gGvdnih----ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG 194 (317)
T KOG1596|consen 136 PFRSKLAAGILGGVDNIH----IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG 194 (317)
T ss_pred hHHHHHHHHhhcCcccee----ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch
Confidence 555566666543332210 146789999999999865554431 2 23499999999864
No 482
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.64 E-value=2.5e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=34.7
Q ss_pred CCCCeEEEecc-CCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYS-GTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgs-GTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++.+|=-|+ +++.||.+++. .|+ +|+.+..+.... +.+++-.+..+ ....+++|+.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~Dv~~ 67 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLE-ERVRKMAAELD---SELVFRCDVAS 67 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHH-HHHHHHHhccC---CceEEECCCCC
Confidence 35678888887 57788887764 576 687776554333 33333222222 23467778754
No 483
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=27.61 E-value=1.7e+02 Score=25.99 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=23.7
Q ss_pred eEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHH
Q 027179 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPN 198 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N 198 (227)
+|.=+|+ |.+|..++ ..|. +|+.+|.+++.+ +.+++.
T Consensus 5 ~I~ViGa--G~mG~~iA~~la~~G~-~V~l~d~~~~~l-~~~~~~ 45 (291)
T PRK06035 5 VIGVVGS--GVMGQGIAQVFARTGY-DVTIVDVSEEIL-KNAMEL 45 (291)
T ss_pred EEEEECc--cHHHHHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHH
Confidence 4444544 55554433 4564 799999999988 765543
No 484
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=27.57 E-value=64 Score=27.75 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=28.9
Q ss_pred eeeeecCCccccccceeeeeccC---CCCC----ChHHHH--HHHHHcCCCCccccC
Q 027179 28 FSTSFTKPISQKRYPLIVFSYKS---GTGL----TSEDKK--ELLKRYGLDPDEFLS 75 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~--~~~~~~G~~~~~~~~ 75 (227)
..+...-|.+.+++||.++.+-. |.|+ |.||.. +|+..||+....++.
T Consensus 85 tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~ 141 (185)
T PF13603_consen 85 TGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIK 141 (185)
T ss_dssp EEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EE
T ss_pred CCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEc
Confidence 34567789999999998776654 3444 899888 999999987754443
No 485
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=27.47 E-value=1.9e+02 Score=26.86 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCCCeEEEeccCC-CHHHHH-HHHcCCCEEEEEeCCHH---------------------HHHHHHHHHHHHhCCCCcEEE
Q 027179 154 LRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMDPW---------------------VVSNVLIPNLEWTGFLDVSSI 210 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~-aas~Ga~~V~aVEis~~---------------------Al~~~ar~N~~~ngl~~~v~~ 210 (227)
..+.+|+=+|||. |+.... ++..|.++++.||.|.- -+ +.+++.++..+-.-+++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka-~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA-IAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHH-HHHHHHHHHHCCCcEEEE
Confidence 3567899998873 332222 23458889999999841 12 355566655544334666
Q ss_pred EEccH
Q 027179 211 HTVRV 215 (227)
Q Consensus 211 i~gDa 215 (227)
+..|+
T Consensus 101 ~~~~~ 105 (338)
T PRK12475 101 VVTDV 105 (338)
T ss_pred EeccC
Confidence 66554
No 486
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=27.40 E-value=2e+02 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.4
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar 196 (227)
..+++||=.| .|.+|+.++ + .|+.+|++++.+++-. +.++
T Consensus 186 ~~g~~VlV~G--~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~-~~~~ 229 (369)
T cd08301 186 KKGSTVAIFG--LGAVGLAVAEGARIRGASRIIGVDLNPSKF-EQAK 229 (369)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH
Confidence 3567777665 478887654 2 4776899999988776 6654
No 487
>PRK12746 short chain dehydrogenase; Provisional
Probab=27.34 E-value=3.7e+02 Score=22.43 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=35.3
Q ss_pred CCCCeEEEeccCCCHHHHHHHH----cCCCEEEEE-eCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFV-EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aas----~Ga~~V~aV-Eis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+++++=.| |+|.+|.+++. +|+ +|+.+ ..+.+.. +...+.+...+ .++.++++|+.+
T Consensus 4 ~~~~~ilItG-asg~iG~~la~~l~~~G~-~v~i~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~d 67 (254)
T PRK12746 4 LDGKVALVTG-ASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA-DETIREIESNG--GKAFLIEADLNS 67 (254)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH-HHHHHHHHhcC--CcEEEEEcCcCC
Confidence 3456788666 68999998764 565 45543 4555544 33333332222 357888888855
No 488
>PRK05599 hypothetical protein; Provisional
Probab=27.33 E-value=2e+02 Score=24.45 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=36.3
Q ss_pred eEEEeccCCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 158 RWLDLYSGTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
.+|=.|+ ++.+|.+++. .| .+|+.++.+++.+ +.+.+.++..+- +++.++.+|+.+
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g-~~Vil~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHG-EDVVLAARRPEAA-QGLASDLRQRGA-TSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCC-CEEEEEeCCHHHH-HHHHHHHHhccC-CceEEEEcccCC
Confidence 3555555 5566777664 35 4789999888877 666666655442 246788888754
No 489
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=27.22 E-value=76 Score=28.82 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCCeEEEeccC-CCHHHHHHHH-cCCCEEEEEeCCH
Q 027179 155 RPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDP 188 (227)
Q Consensus 155 ~~~~VLDLgsG-TG~isI~aas-~Ga~~V~aVEis~ 188 (227)
.+.+|+=+||| .|+...+++. .|.++++.||.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 55678888887 6777666654 4888999999873
No 490
>PRK08017 oxidoreductase; Provisional
Probab=27.06 E-value=1.9e+02 Score=24.13 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=31.2
Q ss_pred eEEEeccCCCHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 158 RWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 158 ~VLDLgsGTG~isI~aas----~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
++|=.|+ +|.+|..++. .|. +|++++.+++.+ +.+++ .+ ++.+.+|+.
T Consensus 4 ~vlVtGa-sg~IG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~----~~----~~~~~~D~~ 55 (256)
T PRK08017 4 SVLITGC-SSGIGLEAALELKRRGY-RVLAACRKPDDV-ARMNS----LG----FTGILLDLD 55 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHh-HHHHh----CC----CeEEEeecC
Confidence 4666665 7888887764 465 799999998776 55432 22 345566654
No 491
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=27.02 E-value=85 Score=29.72 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCCHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHH
Q 027179 165 GTGSVGIEAIS---RGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 165 GTG~isI~aas---~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
|.|.+|+.++. .| -+|+++|++++.+ +.+++
T Consensus 7 GlGyvGl~~A~~lA~G-~~VigvD~d~~kv-~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQN-HEVVALDILPSRV-AMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhC-CcEEEEECCHHHH-HHHHc
Confidence 77877766653 35 4799999999998 66654
No 492
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.00 E-value=3e+02 Score=23.15 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCCCeEEEeccCC-CHHHHHHH----HcCCCEEEEEeCC------------HHHHHHHHHHHHHHhCCCCcEEEEEccHH
Q 027179 154 LRPGRWLDLYSGT-GSVGIEAI----SRGCSEVHFVEMD------------PWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (227)
Q Consensus 154 ~~~~~VLDLgsGT-G~isI~aa----s~Ga~~V~aVEis------------~~Al~~~ar~N~~~ngl~~~v~~i~gDa~ 216 (227)
..++.+|=.|++. |.+|..++ ..|+ +|+.++.+ +... . ..+.++..+ +++.++..|+.
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~-~-~~~~~~~~~--~~~~~~~~D~~ 77 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKTMPWGMHDKEPV-L-LKEEIESYG--VRCEHMEIDLS 77 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccccccccchhhHH-H-HHHHHHhcC--CeEEEEECCCC
Confidence 3566788888664 67777665 3575 79998766 3333 2 333333333 35888898875
Q ss_pred H
Q 027179 217 T 217 (227)
Q Consensus 217 ~ 217 (227)
+
T Consensus 78 ~ 78 (256)
T PRK12748 78 Q 78 (256)
T ss_pred C
Confidence 4
No 493
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.94 E-value=3.9e+02 Score=24.64 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=40.3
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..+..++=-|+-+ .+|.+.+ .+| .+|+..-.|.+.. +.+.+-+....-..++.+++.|+-+
T Consensus 33 ~~~~~~vVTGans-GIG~eta~~La~~G-a~Vv~~~R~~~~~-~~~~~~i~~~~~~~~i~~~~lDLss 97 (314)
T KOG1208|consen 33 LSGKVALVTGATS-GIGFETARELALRG-AHVVLACRNEERG-EEAKEQIQKGKANQKIRVIQLDLSS 97 (314)
T ss_pred CCCcEEEEECCCC-chHHHHHHHHHhCC-CEEEEEeCCHHHH-HHHHHHHHhcCCCCceEEEECCCCC
Confidence 3455666666655 5666655 468 5899999998665 5555555553333568889999753
No 494
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=26.92 E-value=55 Score=30.41 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCCeEEEeccCCCHHHHHHHH
Q 027179 155 RPGRWLDLYSGTGSVGIEAIS 175 (227)
Q Consensus 155 ~~~~VLDLgsGTG~isI~aas 175 (227)
..-+|+|+||-+|.-++.+.+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 445899999999999998764
No 495
>PLN02827 Alcohol dehydrogenase-like
Probab=26.81 E-value=1.8e+02 Score=26.77 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=28.4
Q ss_pred CCCCeEEEeccCCCHHHHHHH---H-cCCCEEEEEeCCHHHHHHHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDPWVVSNVLI 196 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa---s-~Ga~~V~aVEis~~Al~~~ar 196 (227)
..+.+||=.| .|.+|+.++ + .|+..|+++|.+++-. +.++
T Consensus 192 ~~g~~VlV~G--~G~vG~~~iqlak~~G~~~vi~~~~~~~~~-~~a~ 235 (378)
T PLN02827 192 SKGSSVVIFG--LGTVGLSVAQGAKLRGASQIIGVDINPEKA-EKAK 235 (378)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHH
Confidence 3577888775 477877654 3 4776799999888776 6654
No 496
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.78 E-value=3e+02 Score=23.18 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=36.1
Q ss_pred CCCCeEEEeccCCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEccHHH
Q 027179 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (227)
Q Consensus 154 ~~~~~VLDLgsGTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~N~~~ngl~~~v~~i~gDa~~ 217 (227)
..++++|=.|+ +|.+|..++ ..|+ +|+.++.+.. . +.+.+.+...+ .++.++.+|+.+
T Consensus 13 l~~k~vlItGa-s~gIG~~ia~~l~~~G~-~v~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~D~~~ 74 (258)
T PRK06935 13 LDGKVAIVTGG-NTGLGQGYAVALAKAGA-DIIITTHGTN-W-DETRRLIEKEG--RKVTFVQVDLTK 74 (258)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCcH-H-HHHHHHHHhcC--CceEEEEcCCCC
Confidence 45678888886 556676665 3565 6888887733 2 33333333333 357888888764
No 497
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=26.78 E-value=1.4e+02 Score=26.86 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCHHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 027179 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (227)
Q Consensus 165 GTG~isI~aa----s~Ga~~V~aVEis~~Al~~~ar~ 197 (227)
|.|.+|..++ ..|. +|+.+|.+++.+ +.++.
T Consensus 9 G~G~mG~~iA~~la~~G~-~V~v~d~~~~~~-~~~~~ 43 (308)
T PRK06129 9 GAGLIGRAWAIVFARAGH-EVRLWDADPAAA-AAAPA 43 (308)
T ss_pred CccHHHHHHHHHHHHCCC-eeEEEeCCHHHH-HHHHH
Confidence 5666665544 3454 799999999877 66544
No 498
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=26.77 E-value=2.5e+02 Score=23.23 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=18.3
Q ss_pred EEEeccC-CCHHH-HHHHHcCCCEEEEEeCCH
Q 027179 159 WLDLYSG-TGSVG-IEAISRGCSEVHFVEMDP 188 (227)
Q Consensus 159 VLDLgsG-TG~is-I~aas~Ga~~V~aVEis~ 188 (227)
|+=+||| .|+.- ..++..|..+++.+|.+.
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4555655 23322 222346888999999985
No 499
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.76 E-value=4.4e+02 Score=25.17 Aligned_cols=58 Identities=24% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCeEEEecc---------------CCCHHHHHHH----HcCCCEEEEEe
Q 027179 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS---------------GTGSVGIEAI----SRGCSEVHFVE 185 (227)
Q Consensus 125 ~g~~~RPtte~v~ealf~~L~~~~~~~~~~~~~~VLDLgs---------------GTG~isI~aa----s~Ga~~V~aVE 185 (227)
.|.+-=|+.+.+...+...+... +..+++||--|. .||.+|.+++ .+|+ +|+.++
T Consensus 162 ~g~gr~~~~~~I~~~~~~~~~~~-----~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~ 235 (399)
T PRK05579 162 VGPGRMAEPEEIVAAAERALSPK-----DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVS 235 (399)
T ss_pred cCCCCCCCHHHHHHHHHHHhhhc-----ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeC
Confidence 34455678888887776666432 257888887776 3787777665 3576 788887
Q ss_pred CCH
Q 027179 186 MDP 188 (227)
Q Consensus 186 is~ 188 (227)
.+.
T Consensus 236 ~~~ 238 (399)
T PRK05579 236 GPV 238 (399)
T ss_pred CCc
Confidence 543
No 500
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=26.72 E-value=1.4e+02 Score=30.93 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=29.6
Q ss_pred CeEEEeccCCCHHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 027179 157 GRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (227)
Q Consensus 157 ~~VLDLgsGTG~isI~--aas~Ga~~V~aVEis~~Al~~~ar~N~~ 200 (227)
.+|-=+|+|+=.-+|+ ++..|. .|+.+|.+++++ +.+.+.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l-~~~~~~i~ 379 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGL-DRGQQQVF 379 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHH-HHHHHHHH
Confidence 4688888876333443 345564 799999999998 77666554
Done!