BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027180
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 273 bits (697), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 155/200 (77%), Gaps = 17/200 (8%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
L+ KPQ+YMN+SGE+I YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 208 GFDQNISRFNMGQKYKYHAV 227
GF + RFN+ QKYK+H V
Sbjct: 193 GFSGSTERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/193 (67%), Positives = 150/193 (77%), Gaps = 17/193 (8%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
L+ KPQ+YMN+SGE+I YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 208 GFDQNISRFNMGQ 220
GF + RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 256 bits (655), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 148/194 (76%), Gaps = 17/194 (8%)
Query: 45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
+EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA + I MNT Q K+L+G GSIGEVP+
Sbjct: 1 MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
L+ KPQ+YMN+SGE+I YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61 LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 180
Query: 208 GFDQNISRFNMGQK 221
GF + RFN+ QK
Sbjct: 181 GFSGSTERFNLVQK 194
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A +S A + G ++LA
Sbjct: 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
KP+ YMN SG I +D++ L G +RL+ GG G HNGL+SV+
Sbjct: 64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++ EQ +A L+ G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A +S A + G ++LA
Sbjct: 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
KP+ YMN SG I +D++ L G +RL+ GG G HNGL+SV+
Sbjct: 64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++ EQ +A L+ G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 19/180 (10%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A A +S A + G + ++LA
Sbjct: 4 PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
KP+ YMN SG I+DE+ + G +RL+ GG G HNGL+SV +
Sbjct: 64 KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L G + F R+ IG+G PPG+ D A++L+ F+ ER ++ +EQ +A L+ G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLE 182
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
P L+VGLGNPG Y TRHN+GF + D +A A +S A + G + ++LA
Sbjct: 4 PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
KP+ MN SG I+DE+ + G +RL+ GG G HNGL+SV +
Sbjct: 64 KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L G + F R+ IG+G PPG+ D A++L+ F+ ER ++ +EQ +A L+ G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLE 182
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN GF ++ +A I + N + + G G+I + L P
Sbjct: 6 LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S+ +DE+ + GV+RL+ GGHG HNGL+ ++ H+
Sbjct: 66 MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
F RL IGIG+P K + ++L K E+ +D A++ + V+ LV Q
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 213 ISRFN 217
+++ N
Sbjct: 184 MNQIN 188
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 21/167 (12%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
+I+GLGN G +Y TRHNVG I IAQ Q + N + L + SI ++L
Sbjct: 25 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
P YMN SG + ++DE+ + +G +RL+ GGHG HNGL+S+ H
Sbjct: 84 PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 198
L G ++ RL IGIG+P K + Y+L S +++ ID+A++ G+
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 36/189 (19%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
LIVGLGNPG +Y TRHN GF ++D +A R A T++ + + + L
Sbjct: 25 LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 149
+PQ YMN SG+S+ +DE+ L G ++L+ GG G HNGLK +
Sbjct: 82 LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 150 NHLDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVE 199
HL +++ RL IGIG+P K D+ ++L+ E++ IDAA+E+ +
Sbjct: 142 AHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL- 199
Query: 200 AVRTLVLNG 208
AV V+ G
Sbjct: 200 AVMPAVVKG 208
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
P +MN SG+++ +DE+ L GV + + GGHG HNGLK +++
Sbjct: 62 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181
Query: 211 QNISRFN 217
+ +R +
Sbjct: 182 KATNRLH 188
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 8 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
P +MN SG+++ +DE+ L GV + + GGHG HNGLK +++
Sbjct: 66 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 185
Query: 211 QNISRFN 217
+ +R +
Sbjct: 186 KATNRLH 192
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
LIVGL NPG +Y TRHN G +D +A+ R + + G S +G + L
Sbjct: 25 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
P +MN SG+++ +DE+ L GV + + GGHG HNGLK +++
Sbjct: 83 VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
L F RL IGIG+P K + ++L K E++ ID A+++ +G
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 202
Query: 211 QNISRFN 217
+ +R +
Sbjct: 203 KATNRLH 209
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN G ++ +A AQ +++ + L+G S + L P
Sbjct: 12 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S+ +DE+ + GV +L+ GGHG HNGL+ ++ L
Sbjct: 72 TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 195
F RL +GIG+P + Y+L + E+E +D +++
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 174
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
LIVGLGNPG +Y TRHN G ++ +A AQ +++ + L+G S + L P
Sbjct: 6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S+ +DE+ + GV +L+ GGHG HNGL+ ++ L
Sbjct: 66 TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 195
F RL +GIG+P + Y+L + E+E +D +++
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 168
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 104 ILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 163
++ KP + + I ++ + G+L H N ++ + L G R PR+ I
Sbjct: 15 VVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFI 74
Query: 164 GIGNPPGKMDM 174
G + G D+
Sbjct: 75 GKDSIGGSSDL 85
>pdb|1QD6|C Chain C, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1QD6|D Chain D, Outer Membrane Phospholipase A From Escherichia Coli
Length = 240
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 129 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 188
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 189 TGYGGAELGL 198
>pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW2|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 4.6
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 6.1
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 8.3
Length = 275
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 104 ILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 163
++ KP + I ++ + G+L H N ++ + L G R PR+ I
Sbjct: 16 VVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFI 75
Query: 164 G 164
G
Sbjct: 76 G 76
>pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW3|B Chain B, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 VHASLPADNGGFKVEYTPWLIVG--LGNPGI-KYHGTRH-NVGFEMIDHIAQAQ-RIAMN 86
++ L A+NG + VE PW +VG NP I KY G +G+ + D + A+ + N
Sbjct: 164 LYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWN 223
Query: 87 TIQSKALIGI 96
T A +G+
Sbjct: 224 TGYGGAELGL 233
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 12 ISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEY 47
I+ P PPF + +++ R V SL +NG F++++
Sbjct: 118 INSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDF 153
>pdb|3LAZ|A Chain A, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
pdb|3LAZ|B Chain B, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
Length = 99
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 43 FKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALI 94
KV T + + + + G+K GTR G E+I+HI Q ++A+ I + I
Sbjct: 19 IKVHDTDNVAIIVNDNGLKA-GTRFPDGLELIEHIPQGHKVALLDIPANGEI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,454
Number of Sequences: 62578
Number of extensions: 318086
Number of successful extensions: 690
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 25
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)