BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027180
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 317 bits (812), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/246 (64%), Positives = 183/246 (74%), Gaps = 19/246 (7%)
Query: 1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
M A S+P T P+ F Q + S R + ASLP +DN K EYTPWLIVGLGNP
Sbjct: 1 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60
Query: 59 GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
G+KY+GTRHN+GFEMIDHIA+A I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61 GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120
Query: 119 S-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 161
S IYD+M L NGVLRLQPKGGH HNGLK+V HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180
Query: 162 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 221
IGIGNPPG MDMKA+LLQKFSP+ER+Q+D LEQGVE V+TLV GF +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240
Query: 222 YKYHAV 227
YK+H V
Sbjct: 241 YKFHKV 246
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 300 bits (769), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/224 (68%), Positives = 174/224 (77%), Gaps = 18/224 (8%)
Query: 21 PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
P R+ R+C S D+ FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+
Sbjct: 18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76
Query: 81 QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-----------------IYDE 123
+ + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGES IYDE
Sbjct: 77 EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136
Query: 124 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 183
M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196
Query: 184 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 283 bits (724), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/215 (65%), Positives = 163/215 (75%), Gaps = 18/215 (8%)
Query: 30 LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
+ V AS+P D EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46 IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104
Query: 90 SKALIGIGSIGEVPILLAKPQAYMNFSGESI-----------------YDEMSLMNGVLR 132
SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE+I YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164
Query: 133 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 192
LQ KGGHG HNGL++VM LD RE PRL IGIG+PPGKMD +A+LLQKFS ER QID
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224
Query: 193 ALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
ALEQGV+AVRTLVL GF +I RFN+ QKYK+H+V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 280 bits (715), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 172/241 (71%), Gaps = 30/241 (12%)
Query: 4 ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
+L+AP I PR PF V +S+P D VEYTPWLI GLGNPG KY+
Sbjct: 29 SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75
Query: 64 GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESI--- 120
GTRHNVGFEM+D IA + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE+I
Sbjct: 76 GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135
Query: 121 --------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 166
YD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195
Query: 167 NPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHA 226
+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL GF + RFN+ QKYK+H
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHR 255
Query: 227 V 227
V
Sbjct: 256 V 256
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/195 (53%), Positives = 135/195 (69%), Gaps = 17/195 (8%)
Query: 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
+ PWL +GLGNPG KY GTRHN+GFEMID A++ I MN + KA++G G + ++P++L
Sbjct: 16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75
Query: 107 AKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 149
AKPQ YMN SGES ++D+M L GVLRLQ KGGHG HNGLKSVM
Sbjct: 76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135
Query: 150 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 209
NH G REF RL IGIG PPG+MD KA+LLQKFS RE++D AL +GV+A++ ++ F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195
Query: 210 DQNISRFNMGQKYKY 224
++ FN+ QKYK+
Sbjct: 196 GESWRLFNVEQKYKH 210
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 206 bits (525), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 131/186 (70%), Gaps = 17/186 (9%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+ KAL G G IG +PI+LAK
Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153
Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
PQ +MN SGES +YD++ L G LRL PKGGHG HNG++S+++
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G R+FPRL IGIG PPGKMD ++L++F+ E+E++D + G+EA+R L+L GF++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273
Query: 212 NISRFN 217
+ + N
Sbjct: 274 SATFVN 279
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 131/189 (69%), Gaps = 17/189 (8%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
PWL VGLGNPG Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
Query: 109 PQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
PQ +MN SGES+ YD++ L LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L R+FPRL IGIG PPGKMD ++L+ F+ E+E++D A +G+EAVR + L GF++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
Query: 212 NISRFNMGQ 220
+ + N Q
Sbjct: 235 SATYVNTAQ 243
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 18/185 (9%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+++VGLGNPG KY TRHNVGF++ID +A+ I++ I+ KALIG G +G +LL KP
Sbjct: 2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q YMN SGE+ +YD++ L G +R++ KG G HNG+KS+ L
Sbjct: 62 QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G +FPR+ +G+ P D+ ++L +F E + I+ ALE+ +A+ +++ D +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180
Query: 213 ISRFN 217
++++N
Sbjct: 181 MNKYN 185
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 137 bits (344), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF ++ +A+ + ++K+ I G I + L KP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SG++ IYD++ L LRL+ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G EFPRL IGIG PPG+MD Y+L +F+P E + L + +AV +V G
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180
Query: 212 NISRFN 217
++R+N
Sbjct: 181 AMNRYN 186
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 18/185 (9%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I+GLGNP +Y TRHN+GF+ I +A I+++T + KA+ G G IG ++LAKP
Sbjct: 2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q YMN SGES IYD++SL G LR++ KG G HNG+K+++ HL
Sbjct: 62 QTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G EF R+ IG+G+ P D+ Y+L +F E I ALE+ +A T++ +G
Sbjct: 122 -GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVA 180
Query: 213 ISRFN 217
++ FN
Sbjct: 181 MNLFN 185
>sp|B9LE93|PTH_CHLSY Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1
Length = 188
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF +D +A+ + ++ + + G+I ++LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SG++ IYD++ L LR++ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G EFPRL +GIG PPGKMD Y+L +F+P E + L + +AV ++ G
Sbjct: 122 L-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 212 NISRFN 217
++R+N
Sbjct: 181 AMNRYN 186
>sp|A9WBS1|PTH_CHLAA Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1
Length = 188
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF +D +A+ + ++ + + G+I ++LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SG++ IYD++ L LR++ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G EFPRL +GIG PPGKMD Y+L +F+P E + L + +AV ++ G
Sbjct: 122 L-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 212 NISRFN 217
++R+N
Sbjct: 181 AMNRYN 186
>sp|A6TJM7|PTH_ALKMQ Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain
QYMF) GN=pth PE=3 SV=1
Length = 185
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 19/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++IVGLGNPG KY GTRHNVGF++ID +A I +N ++ KAL G IG ++LAKP
Sbjct: 2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q +MN SGES IYD++ + G LR++ G G HNG+KS + L
Sbjct: 62 QTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
FPR+ IG+G P D+ Y+L F+ E + +LE+ V ++V++G D+
Sbjct: 122 Q-TDAFPRIRIGVGRPEFG-DLSNYVLGSFTKDEIPLMKESLERATLTVESIVIDGIDKA 179
Query: 213 ISRFN 217
++R+N
Sbjct: 180 MNRYN 184
>sp|Q97E97|PTH_CLOAB Peptidyl-tRNA hydrolase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=pth
PE=3 SV=1
Length = 187
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG+KY TRHN+GF+ I++IA I+++ K L G G I ++L KP
Sbjct: 2 FLIVGLGNPGLKYEHTRHNMGFDAIENIAAKHNISIDKKGFKGLYGKGIIDGEKVILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD++SL G +R++ KG G HNG+K+++ HL
Sbjct: 62 YTYMNLSGESVVEAANYYKINKENIVVIYDDISLDVGKIRIRTKGSAGGHNGIKNIVLHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
EFPR+ +G+G P ++ Y+L KFS ER++I+ L EAV +V++G
Sbjct: 122 S-SEEFPRVKVGVGEPT--ENLVNYVLGKFSQDERKKIEEVLNIVTEAVECMVVDGVQNA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNKFN 183
>sp|A5US07|PTH_ROSS1 Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain RS-1) GN=pth
PE=3 SV=1
Length = 217
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG Y TRHN+GF ++ +AQ R+ ++ A I G I + LA P
Sbjct: 2 WLIVGLGNPGDTYARTRHNIGFRVVSELAQRHRLEFTHKRAHARIAEGIIAGQRVALALP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SG++ +YD++ L GVLRL+ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIITL 121
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G + FPRL IGI PP D+ Y+L +F+P + Q+ +++ +A+ T+V G
Sbjct: 122 L-GSQVFPRLRIGIDRPPPAWDLADYVLGRFTPEQEAQLPDIMQKAADALETVVREGMAV 180
Query: 212 NISRFN 217
++R N
Sbjct: 181 AMNRIN 186
>sp|C4Z4L5|PTH_EUBE2 Peptidyl-tRNA hydrolase OS=Eubacterium eligens (strain ATCC 27750 /
VPI C15-48) GN=pth PE=3 SV=1
Length = 186
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 18/185 (9%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHN GF +ID +A I+++T + K LIG G I ++L KP
Sbjct: 2 YIIAGLGNPGKEYMGTRHNAGFSVIDELADKYNISVDTAKHKGLIGKGVIAGQKVILVKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGE I+D++SL G LRL+ KG G HNG+KS++ HL
Sbjct: 62 MTYMNNSGECIREVMDYYKCDIDDFLVIFDDISLDVGKLRLRAKGSAGGHNGIKSIIAHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G +F R+ G+G+ P D+ ++L KF E + A ++ EAV ++ +G +
Sbjct: 122 -GSDKFKRIKFGVGDKPKNWDLADWVLGKFPAEEYATLREANKKACEAVECILTDGIESG 180
Query: 213 ISRFN 217
++++N
Sbjct: 181 MNKYN 185
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 19/192 (9%)
Query: 37 PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGI 96
P ++G V WL+VGLGNPG KY G RHNVGF ++D +A + ++ A +
Sbjct: 23 PGESGAV-VSGERWLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVE 81
Query: 97 GSIGEVPILLAKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGH 139
+G+ P++LAKP +YMN SG ++DE+ + L+L+ GG
Sbjct: 82 TRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGS 141
Query: 140 GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVE 199
HNGL+S+ L G ++ R+ +GIG PPG+MD +++LQ FS ER+++D + + +
Sbjct: 142 AGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAAD 200
Query: 200 AVRTLVLNGFDQ 211
AV T+V +G ++
Sbjct: 201 AVETVVTSGLEK 212
>sp|A8MK43|PTH_ALKOO Peptidyl-tRNA hydrolase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=pth PE=3 SV=1
Length = 185
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 109/184 (59%), Gaps = 19/184 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
+IVGLGNPG KY TRHN+GFE ID +A+ I + ++ KAL G G+IG +LL KPQ
Sbjct: 3 IIVGLGNPGKKYDATRHNIGFEAIDMLAKRNNIEVKKLKHKALCGEGTIGGNKVLLVKPQ 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
+MN SG+S +YD++ + G LR++ KG G HNG+KS++ +L
Sbjct: 63 TFMNLSGQSLLDIVQFYKVDPKNIVVLYDDIDIPVGTLRIREKGSSGTHNGMKSII-YLL 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
+FPR+ IG+G P D+ Y+L +F E + LE+ +AV TLV +G ++
Sbjct: 122 QTDQFPRIRIGVGKPQFG-DLADYVLGRFPKEEIPTMLETLERASQAVETLVKDGIAVSM 180
Query: 214 SRFN 217
+R+N
Sbjct: 181 NRYN 184
>sp|A4XIS3|PTH_CALS8 Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=pth PE=3 SV=1
Length = 189
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ID++AQA ++ I+ K L G + +LL KP
Sbjct: 3 YIIAGLGNPGERYTFTRHNAGFLAIDYLAQAFNTKVDKIKFKGLTGSFEYADKKVLLLKP 62
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S IYD+++ GV++++ KG G HNG+KS++ L
Sbjct: 63 MTYMNSSGDSIVEAVNFYKVKPEKLIVIYDDIAFDVGVVKMRKKGSDGGHNGVKSIIQRL 122
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G EFPR+ IGIG P K DM Y+L +F E+++I A+E+ + ++ L+ +G D+
Sbjct: 123 -GTEEFPRIRIGIGVP--KEDMVKYVLSEFEDYEKQKIFRAIEKAAQGIKILLESGIDRA 179
Query: 213 ISRFN 217
++ N
Sbjct: 180 MNYIN 184
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 108/185 (58%), Gaps = 19/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG +Y TRHNVGF++ID I++ I +N + K + G G+I ++L KP
Sbjct: 2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD++SL G +R++ KG G HNG+K+++ H
Sbjct: 62 LTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G FPR+ +G+G P + D+ +++L KF+ +RE + E +A ++ G +
Sbjct: 122 -GSDVFPRIKVGVGQPVQR-DLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEA 179
Query: 213 ISRFN 217
+++FN
Sbjct: 180 MNKFN 184
>sp|B2TI10|PTH_CLOBB Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=pth PE=3 SV=1
Length = 191
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG KY TRHN+GFE+ID+I+ I +N + + + G G I ++L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S IYD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
FPR+ +G+G P +D+ Y+L KFS E+E + ++E +V ++ +
Sbjct: 122 -STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIKQDVNSA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNKFN 183
>sp|Q8R757|PTH_THETN Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pth PE=3
SV=1
Length = 185
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 111/185 (60%), Gaps = 19/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +++ I ++ ++ K+L+G G ++L KP
Sbjct: 2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q +MN SGE+ +YD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YL 120
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+FPR+ IGIG P D+ ++L +FS E++ ID A+E+ EAV ++ NG +
Sbjct: 121 LNSEDFPRVRIGIGKPEDG-DLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGIEHA 179
Query: 213 ISRFN 217
+SRFN
Sbjct: 180 MSRFN 184
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 19/187 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ++D +A+ I + + K+L+G G I V +LL KP
Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q YMN SG + +YD++ L G +RL+ KG G H G+ S+++ L
Sbjct: 62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G E PRL IGIG P D+K Y+LQ F+ ERE ++ L+ EA+ + GF++
Sbjct: 122 -GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179
Query: 213 ISRFNMG 219
++ FN G
Sbjct: 180 MTDFNRG 186
>sp|B0K466|PTH_THEPX Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. (strain X514)
GN=pth PE=3 SV=1
Length = 184
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 111/185 (60%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +A+ + + ++ K+L+G G+ I+L KP
Sbjct: 2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q +MN SGE+ IYD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFMNSSGEALYDAVNFYKIPLENVIVIYDDKDLDLGKIRIRKKGSSGGHNGMNSII-YL 120
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
EFPR+ IGIG P + D+ +++L KF E++ ID A+ + +AV ++ NG +
Sbjct: 121 LNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHA 178
Query: 213 ISRFN 217
+S+FN
Sbjct: 179 MSKFN 183
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|B2UXS9|PTH_CLOBA Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=pth PE=3 SV=1
Length = 191
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG KY TRHN+GFE+ID+I+ I +N + K + G G I ++L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SG+S IYD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
FPR+ +G+G P ++ Y+L KFS E+E + ++E +V ++ +
Sbjct: 122 -STDVFPRIKVGVGQPND--NLVDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNKFN 183
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS +RE ID L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|B0KBG1|PTH_THEP3 Peptidyl-tRNA hydrolase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=pth PE=3 SV=1
Length = 184
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +A+ + + ++ K+L+G G+ I+L KP
Sbjct: 2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
Q ++N SGE+ IYD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFVNSSGEALYDAVNFYKIPLENVIVIYDDKDLDVGKIRIRKKGSSGGHNGMNSII-YL 120
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
EFPR+ IGIG P + D+ +++L KF E++ ID A+ + +AV ++ NG +
Sbjct: 121 LNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHA 178
Query: 213 ISRFN 217
+S+FN
Sbjct: 179 MSKFN 183
>sp|C4KZU9|PTH_EXISA Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=pth PE=3 SV=1
Length = 185
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
Query: 52 IVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
IVGLGNPG K+ TRHNVGF ID +A+ I++N + AL+G G I ++L KP
Sbjct: 4 IVGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLT 63
Query: 112 YMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 154
YMN SGE+ IYD++ ++ G LR +PKG G HNG+KS++ HL G
Sbjct: 64 YMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGIKSLIQHL-G 122
Query: 155 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 214
EF RL +GIG PP + + ++L + E +++ L+ V A V + ++
Sbjct: 123 TAEFKRLKLGIGRPPHPIKVVDWVLMNYRKDELPELNETLDNAVTAATDFVDTDWLALMN 182
Query: 215 RFN 217
R+N
Sbjct: 183 RYN 185
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D +A+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 213 ISRFN 217
++++N
Sbjct: 179 MNKYN 183
>sp|A6LPJ5|PTH_CLOB8 Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=pth PE=3 SV=1
Length = 191
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG +Y TRHN+GF++ID+IA+ I +N + K + G G I ++L KP
Sbjct: 2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKP 61
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD++SL G LR++ KG G HNG+KS++ HL
Sbjct: 62 TTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
+ F R+ +G+G P G D+ ++L KF+ E + ++E +A ++ N
Sbjct: 122 N-SEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIKNDVKTA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNQFN 183
>sp|Q0SQ66|PTH_CLOPS Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 110/184 (59%), Gaps = 20/184 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF++ID++A I +N + K + G G I ++L KP
Sbjct: 3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 111 AYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGESI YD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 63 TYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G + FPR+ +G+G P K ++ ++L KFS +RE I+ + +A+ +V N +++
Sbjct: 123 GDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 214 SRFN 217
++FN
Sbjct: 180 NKFN 183
>sp|A4J0Q6|PTH_DESRM Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1)
GN=pth PE=3 SV=1
Length = 206
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 22/176 (12%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF +ID +A R++ Q KA I +IG ++LAKPQ
Sbjct: 3 LIVGLGNPGTEYAKTRHNIGFMVIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKPQ 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SG+S I D+M L GVLR++ G G GLK+++ L
Sbjct: 63 TYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNIIELL- 121
Query: 154 GCREFPRLCIGIGNPP-GKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 208
G ++FPR+ +GIG P G +D ++L K S E E I+ A++ VEAV+ VL G
Sbjct: 122 GTQQFPRMRVGIGRPEHGAVD---HVLGKISEAEAELINPAIQTAVEAVKVWVLEG 174
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 18/184 (9%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
L VGLGNPG +Y TRHNVGF +ID +A+ +++ T + + L G S+ + L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPL 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGE IYD++ L G +RL+ KG G HNG+KS+++HL
Sbjct: 63 TYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL- 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G +F R+ IGIG P G + Y+L +F+ E+ +D A+ + +A V F Q +
Sbjct: 122 GTEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVM 181
Query: 214 SRFN 217
+ FN
Sbjct: 182 NDFN 185
>sp|A7NK01|PTH_ROSCS Peptidyl-tRNA hydrolase OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=pth PE=3 SV=1
Length = 214
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG Y TRHN+GF ++ +AQ + ++KA I G I + LA P
Sbjct: 2 WLIVGLGNPGETYARTRHNIGFRVVTELAQRHHLRFTHKRAKAEIAEGEIAGQRVALALP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SG++ +YD++ L GVLRL+ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIVAL 121
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
L G + FPRL IGI PP ++ Y+L +F+P + Q+ + +A+ ++ G
Sbjct: 122 L-GSQVFPRLRIGIDRPPVAWNLADYVLARFTPEQEAQLPEVTRRAADALELVLREGIVV 180
Query: 212 NISRFN 217
++R N
Sbjct: 181 AMNRIN 186
>sp|B9MPK0|PTH_CALBD Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=pth PE=3 SV=1
Length = 189
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ID++AQ ++ I+ K L+G +LL KP
Sbjct: 3 YIITGLGNPGERYTFTRHNAGFLAIDYLAQFFNTKVDKIKFKGLVGSFEYAGKKVLLLKP 62
Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES IYD+++ GV++++ KG G HNG+KS++ L
Sbjct: 63 MTYMNASGESIIEAVNFYKIKPEKLIVIYDDIAFDVGVVKMRKKGSDGGHNGIKSIIQCL 122
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G EFPR+ IGIG P K DM Y+L +F E+E+I A+E+ ++ L+ + D+
Sbjct: 123 -GTEEFPRIRIGIGVP--KYDMVKYVLSEFEDGEKEKIFRAIEKASNGIKILLESDIDRA 179
Query: 213 ISRFN 217
++ N
Sbjct: 180 MNYIN 184
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 110/184 (59%), Gaps = 20/184 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF++ID++A I +N + K + G G I ++L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 111 AYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGESI YD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G + FPR+ +G+G P K ++ ++L KFS +RE I+ + +A+ +V N +++
Sbjct: 123 GDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 214 SRFN 217
++FN
Sbjct: 180 NKFN 183
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 110/184 (59%), Gaps = 20/184 (10%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF++ID++A I +N + K + G G I ++L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 111 AYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGESI YD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G + FPR+ +G+G P K ++ ++L KFS +RE I+ + +A+ +V N +++
Sbjct: 123 GDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 214 SRFN 217
++FN
Sbjct: 180 NKFN 183
>sp|P37470|PTH_BACSU Peptidyl-tRNA hydrolase OS=Bacillus subtilis (strain 168) GN=spoVC
PE=3 SV=1
Length = 188
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 100/184 (54%), Gaps = 18/184 (9%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
+I GLGNPG Y TRHNVGF +ID +A+ I +N + L G G + +LL KP
Sbjct: 3 VIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPL 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGE IYD++ L G +RL+ KG G HNG+KS++ HL
Sbjct: 63 TYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL- 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G EF R+ IGIG P M + Y+L F+ E +I+ A+++ V+A + F + +
Sbjct: 122 GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVM 181
Query: 214 SRFN 217
+ FN
Sbjct: 182 NEFN 185
>sp|C0ZHD7|PTH_BREBN Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=pth PE=3 SV=1
Length = 189
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 98/188 (52%), Gaps = 18/188 (9%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
+I+GLGNPG KY TRHN GF ID I+ I + + +AL+G G I +LL KPQ
Sbjct: 3 VIIGLGNPGKKYEDTRHNAGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQ 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGES IYD++ L G LRL+ KG G HNG+KS++ HL
Sbjct: 63 TYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHL- 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G +EF R+ +GI P + Y+L F ER I A+ +A F + +
Sbjct: 122 GTQEFKRIKVGISRPEPGRSVSDYVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVM 181
Query: 214 SRFNMGQK 221
+ FN +K
Sbjct: 182 NHFNSLKK 189
>sp|Q0RCD6|PTH_FRAAA Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3
SV=1
Length = 197
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 34 ASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKAL 93
++P D+G PWL+VGLGNPG Y G RHN GF ++D +A+ + + +S+A
Sbjct: 2 TNVPTDDG-------PWLVVGLGNPGPGYAGNRHNAGFMVVDLLAERAGSRLKSHRSRAD 54
Query: 94 IGIGSIGEVPILLAKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPK 136
+ + +LA+P ++MN SG ++DE+ + G +RL+
Sbjct: 55 VAEVRLAGTRAILARPLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRG 114
Query: 137 GGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQ 196
GG HNGL+S+ + L G R++ R+ +GIG PPG+MD Y+L+ F+ ER ++ LE
Sbjct: 115 GGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEH 173
Query: 197 GVEAVRTLVLNGFDQNISRFN 217
++V L+ +G + +R++
Sbjct: 174 SADSVEMLITDGLEPTQNRYH 194
>sp|C4ZBV8|PTH_EUBR3 Peptidyl-tRNA hydrolase OS=Eubacterium rectale (strain ATCC 33656 /
VPI 0990) GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 19/186 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++IVGLGNP KY TRHN+GF++ID +A I++ + KAL G G I + +LL KP
Sbjct: 2 YVIVGLGNPDKKYEHTRHNIGFDVIDALADKYNISVTDKKHKALCGSGVIEGMKVLLVKP 61
Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
Q YMN SGES I+D++SL G +R++ KG G HNG+KS++
Sbjct: 62 QTYMNLSGESVAEVMNFYKLDPDEEMIVIFDDISLEPGRIRIRKKGSAGGHNGIKSIIA- 120
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
+ G + F R+ +G+G P D+ ++L +FS +R +++ A+ ++A ++ D+
Sbjct: 121 MTGTQGFSRIKVGVGEKPQGWDLADHVLGRFSSEDRAKVEEAIGHAMDAAVLMMQGETDK 180
Query: 212 NISRFN 217
++ +N
Sbjct: 181 AMNIYN 186
>sp|A5N4J0|PTH_CLOK5 Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=pth PE=3 SV=1
Length = 187
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGN G+KYH TRHN+GF+ ID +++ I +N + K G G IG+ ++L KP
Sbjct: 2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKP 61
Query: 110 QAYMNFSGESIYDEMSLMN-----------------GVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES+ + ++ G R++ +G G HNG+K+++ +L
Sbjct: 62 GTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G FPR+ IGIG+P +D+ +Y+L KFS +R I+ L+ VEA+ ++ G +
Sbjct: 122 -GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNKFN 183
>sp|B9DY52|PTH_CLOK1 Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain NBRC 12016)
GN=pth PE=3 SV=1
Length = 187
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 20/185 (10%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGN G+KYH TRHN+GF+ ID +++ I +N + K G G IG+ ++L KP
Sbjct: 2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKP 61
Query: 110 QAYMNFSGESIYDEMSLMN-----------------GVLRLQPKGGHGHHNGLKSVMNHL 152
YMN SGES+ + ++ G R++ +G G HNG+K+++ +L
Sbjct: 62 GTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL 121
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
G FPR+ IGIG+P +D+ +Y+L KFS +R I+ L+ VEA+ ++ G +
Sbjct: 122 -GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVA 178
Query: 213 ISRFN 217
+++FN
Sbjct: 179 MNKFN 183
>sp|Q9KGJ3|PTH_BACHD Peptidyl-tRNA hydrolase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=pth PE=3
SV=1
Length = 185
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 18/184 (9%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG KY GTRHNVGF+++D +A+ I + ++ L G G I I L KPQ
Sbjct: 3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEGRIDGEKIFLLKPQ 62
Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
+MN SGES IYD++ L G +RL+ KG G HNG+KS++ HL
Sbjct: 63 TFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGMKSLIAHL- 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G +F R+ +G+ P + ++L ++ P E++ I A++ EA F + +
Sbjct: 122 GTSDFKRIRVGVDRPAPGETVVQHVLGRYRPEEKDAISEAIDLSAEAAEAFTKKPFLEVM 181
Query: 214 SRFN 217
+ FN
Sbjct: 182 NTFN 185
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 18/184 (9%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF ID +A+ I++N + K + G G + ++L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPL 62
Query: 111 AYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
YMN SGESI YD++ L G LRL+ KG G HNG+KS + HL
Sbjct: 63 TYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL- 121
Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
G +EF R+ +GI P M + Y+L +F+ E ++ A+E+ A + F Q +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVM 181
Query: 214 SRFN 217
+ FN
Sbjct: 182 NDFN 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,090,463
Number of Sequences: 539616
Number of extensions: 3945034
Number of successful extensions: 10128
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7714
Number of HSP's gapped (non-prelim): 750
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)