Query 027180
Match_columns 227
No_of_seqs 197 out of 1057
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 2.2E-70 7.4E-75 470.1 17.8 171 49-219 2-190 (193)
2 1ryb_A CRS2; alpha-beta, hydro 100.0 4.5E-70 1.5E-74 472.0 16.8 174 46-220 14-205 (205)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 3.5E-70 1.2E-74 468.2 14.2 169 49-218 4-190 (191)
4 4fyj_A PTH, peptidyl-tRNA hydr 100.0 2.3E-69 7.8E-74 465.8 17.4 170 49-219 10-198 (199)
5 4hoy_A PTH, peptidyl-tRNA hydr 100.0 3.3E-69 1.1E-73 462.8 17.2 170 49-220 4-191 (193)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 3.1E-69 1.1E-73 471.5 17.2 172 47-219 21-220 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 5.1E-69 1.7E-73 466.0 13.3 167 49-216 23-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.1E-70 3.9E-75 472.3 0.0 171 48-219 3-192 (194)
9 1cfz_A Hydrogenase 2 maturatio 62.9 8.4 0.00029 30.9 4.4 134 48-201 1-149 (162)
10 3pu6_A Uncharacterized protein 51.4 17 0.00059 29.0 4.4 30 48-81 3-32 (157)
11 2e85_A Hydrogenase 3 maturatio 48.9 13 0.00046 29.6 3.4 30 48-81 4-33 (159)
12 2ba3_A NIKA; dimer, bacterial 44.2 11 0.00039 24.2 1.9 33 165-197 4-37 (51)
13 2ea9_A JW2626, hypothetical pr 40.5 30 0.001 26.7 3.9 34 173-207 32-65 (105)
14 2inw_A Putative structural pro 39.6 37 0.0013 27.1 4.5 35 173-208 46-80 (133)
15 2zet_C Melanophilin; complex, 34.4 56 0.0019 26.3 4.9 21 179-199 14-34 (153)
16 4hbl_A Transcriptional regulat 33.4 43 0.0015 24.9 3.9 31 175-205 117-147 (149)
17 3mn5_S Protein spire, actin, a 30.4 12 0.00043 23.7 0.3 14 5-18 6-19 (38)
18 1am7_A Lysozyme; glycosidase, 30.3 53 0.0018 26.8 4.2 41 178-218 82-122 (158)
19 2llk_A Cyclin-D-binding MYB-li 28.4 1.3E+02 0.0045 21.1 5.6 42 179-220 23-67 (73)
20 1lj9_A Transcriptional regulat 27.5 70 0.0024 23.2 4.2 32 175-206 108-139 (144)
21 2k9i_A Plasmid PRN1, complete 26.5 61 0.0021 20.3 3.2 47 166-213 1-47 (55)
22 3kp7_A Transcriptional regulat 26.1 86 0.003 23.1 4.5 31 175-205 118-148 (151)
23 3deu_A Transcriptional regulat 23.6 53 0.0018 25.2 2.9 31 175-205 133-163 (166)
24 2cqq_A RSGI RUH-037, DNAJ homo 23.5 1.3E+02 0.0046 21.0 4.8 39 180-218 9-54 (72)
25 1zbd_B Rabphilin-3A; G protein 23.4 81 0.0028 24.7 4.0 21 179-199 7-27 (134)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=2.2e-70 Score=470.11 Aligned_cols=171 Identities=33% Similarity=0.540 Sum_probs=162.7
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------- 119 (227)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~-~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------- 119 (227)
|+|||||||||++|++|||||||+++|+||++++.++. +.+++++++++.+++++|+|+||+||||+||++
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999987 567889999999999999999999999999999
Q ss_pred ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180 120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 190 (227)
Q Consensus 120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l 190 (227)
||||||||+|++|+|.+||+|||||||||+++||+|++|+|||||||||..+.+|++|||++|+++|++.|
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence 99999999999999999999999999999999943789999999999996555799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180 191 DAALEQGVEAVRTLVLNGFDQNISRFNMG 219 (227)
Q Consensus 191 ~~~i~~a~eal~~~i~~g~~~amn~~n~~ 219 (227)
+++++.|+++++.|++.+++++||+||++
T Consensus 162 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 190 (193)
T 2pth_A 162 DEAIDEAARCTEMWFTDGLTKATNRLHAF 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence 99999999999999999999999999975
No 2
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=4.5e-70 Score=472.00 Aligned_cols=174 Identities=73% Similarity=1.189 Sum_probs=160.4
Q ss_pred cCcCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc------
Q 027180 46 EYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES------ 119 (227)
Q Consensus 46 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s------ 119 (227)
++.++|||||||||++|++|||||||+++|+||++++.++++.+++++++++.+++++|+|+||+||||+||++
T Consensus 14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~ 93 (205)
T 1ryb_A 14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA 93 (205)
T ss_dssp -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence 44579999999999999999999999999999999999988778899999999999999999999999999999
Q ss_pred -----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhc-cCCCCccEEEEeecCCCCCCccccccccCCCHHHH
Q 027180 120 -----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL-DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER 187 (227)
Q Consensus 120 -----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~L-ggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~ 187 (227)
||||||||+|++|||.+||+|||||||||+++| | |++|+|||||||||+.+.+|++|||++|+++|+
T Consensus 94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~g-t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDG-RREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTT-CCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcC-CCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 999999999999999999999999999999999 6 789999999999997666799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhccC
Q 027180 188 EQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 220 (227)
Q Consensus 188 ~~l~~~i~~a~eal~~~i~~g~~~amn~~n~~~ 220 (227)
+.|+++++.|++|++.|+++++++|||+||.++
T Consensus 173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~ 205 (205)
T 1ryb_A 173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 999999999999999999999999999999753
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=3.5e-70 Score=468.22 Aligned_cols=169 Identities=41% Similarity=0.723 Sum_probs=151.3
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------- 119 (227)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------- 119 (227)
|+|||||||||++|++|||||||+++|+||++++.++.+ .+++++++++.+++++|+|+||+||||+||++
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y 83 (191)
T 2z2i_A 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY 83 (191)
T ss_dssp CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence 689999999999999999999999999999999998865 46889999999999999999999999999999
Q ss_pred ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180 120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 190 (227)
Q Consensus 120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l 190 (227)
||||||||+|++|+|.+||+|||||||||+++| +|++|+|||||||||+.+.+|++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 162 (191)
T 2z2i_A 84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162 (191)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence 999999999999999999999999999999999 5899999999999996556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 027180 191 DAALEQGVEAVRTLVLNGFDQNISRFNM 218 (227)
Q Consensus 191 ~~~i~~a~eal~~~i~~g~~~amn~~n~ 218 (227)
+++++.|+++++.|+++++++|||+||+
T Consensus 163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 163 PTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp HHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 9999999999999999999999999995
No 4
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=2.3e-69 Score=465.78 Aligned_cols=170 Identities=32% Similarity=0.564 Sum_probs=162.8
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------- 119 (227)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------- 119 (227)
..|||||||||++|++|||||||+++|+||++++.++.. .++.++++++.+++++++|+||+||||+||++
T Consensus 10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y 89 (199)
T 4fyj_A 10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 89 (199)
T ss_dssp CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence 469999999999999999999999999999999998764 46889999999999999999999999999999
Q ss_pred ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCC-CccEEEEeecCCCCCCccccccccCCCHHHHHH
Q 027180 120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 189 (227)
Q Consensus 120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~-~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~ 189 (227)
||||||||+|++|||.+||++||||||||+++|| |+ +|+|||||||||+.+.+|++|||++|+++|++.
T Consensus 90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lg-t~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 168 (199)
T 4fyj_A 90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLG-NQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 168 (199)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHC-SSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHhC-CccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHH
Confidence 9999999999999999999999999999999995 77 999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180 190 IDAALEQGVEAVRTLVLNGFDQNISRFNMG 219 (227)
Q Consensus 190 l~~~i~~a~eal~~~i~~g~~~amn~~n~~ 219 (227)
|++++++|+++++.|+++++++|||+||++
T Consensus 169 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 169 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 999999999999999999999999999975
No 5
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=3.3e-69 Score=462.80 Aligned_cols=170 Identities=37% Similarity=0.612 Sum_probs=163.0
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------- 119 (227)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------- 119 (227)
++|||||||||++|++|||||||+++|+||++++.++.. .++.++++++.+++++++|+||+||||+||++
T Consensus 4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ 83 (193)
T 4hoy_A 4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY 83 (193)
T ss_dssp CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence 579999999999999999999999999999999998755 57789999999999999999999999999999
Q ss_pred ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180 120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 190 (227)
Q Consensus 120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l 190 (227)
||||||||+|++|+|.+||+|||||||||+++|| | ||+|||||||||+.+.+|++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~lg-t-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 4hoy_A 84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIG-P-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHHC-S-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHhc-c-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence 8999999999999999999999999999999995 5 7999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhccC
Q 027180 191 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ 220 (227)
Q Consensus 191 ~~~i~~a~eal~~~i~~g~~~amn~~n~~~ 220 (227)
+++++.|+++++.|+++++++|||+||+++
T Consensus 162 ~~~i~~a~~~i~~~~~~~~~~amn~~n~~k 191 (193)
T 4hoy_A 162 DGAIDHALSKVKLLVQGQVPQAMNQINAYK 191 (193)
T ss_dssp HHHHHHHHHTHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence 999999999999999999999999999864
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=3.1e-69 Score=471.50 Aligned_cols=172 Identities=34% Similarity=0.570 Sum_probs=158.6
Q ss_pred CcCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEecCccccccccc------
Q 027180 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGES------ 119 (227)
Q Consensus 47 ~~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~-k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s------ 119 (227)
++++|||||||||++|++|||||||++||+||++++.++.+. +|.++++++.+++++|+|+||+||||+||++
T Consensus 21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (222)
T 3v2i_A 21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH 100 (222)
T ss_dssp -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence 457999999999999999999999999999999999987764 6889999999999999999999999999998
Q ss_pred -----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCC----------CCCCcccccc
Q 027180 120 -----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL 178 (227)
Q Consensus 120 -----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP----------~~~~~v~~yV 178 (227)
||||||||+|++|||.+||++||||||||+++| +|++|+||||||||| +.+.+|++||
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV 179 (222)
T 3v2i_A 101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV 179 (222)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence 899999999999999999999999999999999 589999999999999 5567899999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180 179 LQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMG 219 (227)
Q Consensus 179 Ls~Fs~eE~~~l~~~i~~a~eal~~~i~~g~~~amn~~n~~ 219 (227)
|++|+++|++.|++++++|+++++.|++.++++|||+||+.
T Consensus 180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~ 220 (222)
T 3v2i_A 180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN 220 (222)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999975
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=5.1e-69 Score=465.95 Aligned_cols=167 Identities=34% Similarity=0.569 Sum_probs=161.0
Q ss_pred CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGES-------- 119 (227)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~-k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------- 119 (227)
|+|||||||||++|++|||||||+++|+||++++.+|.+. ++.++++++.+++++++|+||+||||+||++
T Consensus 23 ~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y 102 (207)
T 3nea_A 23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY 102 (207)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHH
T ss_pred cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHh
Confidence 7999999999999999999999999999999999998765 6889999999999999999999999999999
Q ss_pred ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180 120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI 190 (227)
Q Consensus 120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l 190 (227)
||||||||+|++|||.+||++||||||||+++|| |++|+|||||||||+.+.+|++|||++|+++|++.|
T Consensus 103 ki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~Lg-t~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l 181 (207)
T 3nea_A 103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLG-TNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI 181 (207)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHT-CCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHhC-CCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence 9999999999999999999999999999999994 899999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhh
Q 027180 191 DAALEQGVEAVRTLVLNGFDQNISRF 216 (227)
Q Consensus 191 ~~~i~~a~eal~~~i~~g~~~amn~~ 216 (227)
++++++|+++++.|++.++++|||++
T Consensus 182 ~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 182 DSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 99999999999999999999999975
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.1e-70 Score=472.30 Aligned_cols=171 Identities=33% Similarity=0.571 Sum_probs=161.7
Q ss_pred cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEecCccccccccc-------
Q 027180 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGES------- 119 (227)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~-~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s------- 119 (227)
||+|||||||||++|++|||||||+++|+||++++.++. +.+++++++++.+++++|+|+||+||||+||++
T Consensus 3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f 82 (194)
T 4fno_A 3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 82 (194)
Confidence 468999999999999999999999999999999999876 456889999988999999999999999999999
Q ss_pred ----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCC-CCccEEEEeecCCCCCCccccccccCCCHHHHH
Q 027180 120 ----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 188 (227)
Q Consensus 120 ----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt-~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~ 188 (227)
||||||||+|++|+|.+||+|||||||||+++| +| ++|+|||||||||..+.+|++|||++|+++|++
T Consensus 83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 161 (194)
T 4fno_A 83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161 (194)
Confidence 999999999999999999999999999999999 47 799999999999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180 189 QIDAALEQGVEAVRTLVLNGFDQNISRFNMG 219 (227)
Q Consensus 189 ~l~~~i~~a~eal~~~i~~g~~~amn~~n~~ 219 (227)
.|+++++.|+++++.|+++++++|||+||..
T Consensus 162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 192 (194)
T 4fno_A 162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 192 (194)
Confidence 9999999999999999999999999999974
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=62.90 E-value=8.4 Score=30.85 Aligned_cols=134 Identities=23% Similarity=0.351 Sum_probs=66.1
Q ss_pred cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc-hhc---c
Q 027180 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-IYD---E 123 (227)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-vhD---D 123 (227)
|+.||+|+|||-. .-==+|..++++|.+++..+.. . ..+.-+. .+.. |+ .++...-.. |.| +
T Consensus 1 m~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~~---v-~vid~gt-~~~~--l~---~~l~~~d~lIiVDA~~~ 66 (162)
T 1cfz_A 1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY---V-EILDGGT-AGME--LL---GDMANRDHLIIADAIVS 66 (162)
T ss_dssp CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCTT---E-EEEEEET-CCGG--GH---HHHSSCSEEEEEEECCS
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCCCCCC---e-EEEECCC-CHHH--HH---HHHhCCCEEEEEEehhh
Confidence 3579999999842 3336999999999987543210 0 0110000 0000 00 111111111 445 3
Q ss_pred cCCCCccEEEcc--------CCCCCCCC-chHHHHHhccCCCCcc-EE-EEeecCCCCCCccccccccCCCHHHHHHHHH
Q 027180 124 MSLMNGVLRLQP--------KGGHGHHN-GLKSVMNHLDGCREFP-RL-CIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 192 (227)
Q Consensus 124 LdL~~G~irlk~--------gGs~gGHN-GLKSI~~~Lggt~~f~-RL-RIGIGrP~~~~~v~~yVLs~Fs~eE~~~l~~ 192 (227)
.+.++|+|++-. ..+...|+ |+.++.+.+.-..+++ ++ =||| .|. ++ ++ -..+|++=++.+++
T Consensus 67 ~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~~-g~~LS~~v~~av~~ 140 (162)
T 1cfz_A 67 KKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-EP-HIGLTPTVEAMIEP 140 (162)
T ss_dssp SCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-CS-BSSCCHHHHTTHHH
T ss_pred cCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-CC-CCCCCHHHHHHHHH
Confidence 466788877521 11233454 7787776652122354 33 4577 343 22 33 33567665555555
Q ss_pred HHHHHHHHH
Q 027180 193 ALEQGVEAV 201 (227)
Q Consensus 193 ~i~~a~eal 201 (227)
+++.+.+.+
T Consensus 141 a~~~i~~~l 149 (162)
T 1cfz_A 141 ALEQVLAAL 149 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444433
No 10
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=51.39 E-value=17 Score=29.04 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=23.1
Q ss_pred cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHc
Q 027180 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQ 81 (227)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~ 81 (227)
|+.||+|+|||-. .-==+|..++++|++.+
T Consensus 3 m~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~ 32 (157)
T 3pu6_A 3 LKKVLLCVGNELR----GDDGVAIALGRLVEEQM 32 (157)
T ss_dssp CCEEEEEECCTTB----GGGGHHHHHHHHHHHHC
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhC
Confidence 4579999999842 34469999999998543
No 11
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=48.94 E-value=13 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.2
Q ss_pred cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHc
Q 027180 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQ 81 (227)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~ 81 (227)
|+.||+|+|||-. .-==+|..++++|.+.+
T Consensus 4 M~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~ 33 (159)
T 2e85_A 4 VTDVLLCVGNSMM----GDDGAGPLLAEKCAAAP 33 (159)
T ss_dssp CCEEEEEECCGGG----GGGGHHHHHHHHHHHSC
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHhhhC
Confidence 4579999999842 23369999999998853
No 12
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=44.24 E-value=11 Score=24.21 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred ecCCCCCCccccc-cccCCCHHHHHHHHHHHHHH
Q 027180 165 IGNPPGKMDMKAY-LLQKFSPIEREQIDAALEQG 197 (227)
Q Consensus 165 IGrP~~~~~v~~y-VLs~Fs~eE~~~l~~~i~~a 197 (227)
+|||.+.....+. +--+++++|.+.|++....+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh
Confidence 5788654233343 44489999999998877655
No 13
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=40.52 E-value=30 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=28.0
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 027180 173 DMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207 (227)
Q Consensus 173 ~v~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i~~ 207 (227)
|-++++ +.||++|...||++++..++-+|..+..
T Consensus 32 DRAgi~-G~Fs~~~~~~Ld~aFP~~ikqlE~mL~s 65 (105)
T 2ea9_A 32 DRASIT-GKFSDAECPKLDVVFPHFISQIESMLTT 65 (105)
T ss_dssp GGEEEE-SCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCee-EecCHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 334554 8999999999999999999988887753
No 14
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=39.61 E-value=37 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=28.4
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027180 173 DMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 208 (227)
Q Consensus 173 ~v~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i~~g 208 (227)
|-+.++ +.||++|...||++++..++-+|..+..|
T Consensus 46 DRAgi~-G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 46 DRAGIR-GRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp GGEEEE-SCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCee-EecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 334444 89999999999999999999888887633
No 15
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.37 E-value=56 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 027180 179 LQKFSPIEREQIDAALEQGVE 199 (227)
Q Consensus 179 Ls~Fs~eE~~~l~~~i~~a~e 199 (227)
|+.++++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 799999999999999987643
No 16
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.42 E-value=43 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027180 175 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 205 (227)
Q Consensus 175 ~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i 205 (227)
.++++..|+++|++.+..++.+..+.++.+.
T Consensus 117 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 117 SSCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp HTTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999998888877664
No 17
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=30.43 E-value=12 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=10.8
Q ss_pred cCCCcccccCCCCC
Q 027180 5 LSAPKTCISCPRGP 18 (227)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (227)
|..|..|++|||..
T Consensus 6 lgpp~~c~p~preq 19 (38)
T 3mn5_S 6 LGPPRMCEPSPREQ 19 (38)
T ss_pred cCCcccccCCcHHH
Confidence 56678899999853
No 18
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=30.30 E-value=53 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 027180 178 LLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNM 218 (227)
Q Consensus 178 VLs~Fs~eE~~~l~~~i~~a~eal~~~i~~g~~~amn~~n~ 218 (227)
=|.+|+++-++.+--.+-+-..++..+....++.||+++..
T Consensus 82 gl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 82 GLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 36789999998876544444557888888889999988764
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=28.45 E-value=1.3e+02 Score=21.12 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=28.2
Q ss_pred ccCCCHHHHHHHHHHHHHH---HHHHHHHHHhCHHHHHHhhhccC
Q 027180 179 LQKFSPIEREQIDAALEQG---VEAVRTLVLNGFDQNISRFNMGQ 220 (227)
Q Consensus 179 Ls~Fs~eE~~~l~~~i~~a---~eal~~~i~~g~~~amn~~n~~~ 220 (227)
-++||+||-+.|-+++..- ...|...+...-..+.|+|+...
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L~ 67 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMK 67 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3799999999988777653 23333333556778888887543
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=27.48 E-value=70 Score=23.18 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=25.6
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027180 175 KAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 206 (227)
Q Consensus 175 ~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i~ 206 (227)
.+.+++.|+++|++.+.+++.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999988888877766554
No 21
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=26.55 E-value=61 Score=20.34 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=25.1
Q ss_pred cCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 027180 166 GNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213 (227)
Q Consensus 166 GrP~~~~~v~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i~~g~~~am 213 (227)
|||.... -..-+-=++++++.+.|+......--....++..-+....
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l 47 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYL 47 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7885321 1122333788999999988765433233344443333333
No 22
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=26.13 E-value=86 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=24.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027180 175 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 205 (227)
Q Consensus 175 ~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i 205 (227)
.+-++..|+++|++.+.+++.+..+.++.+.
T Consensus 118 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 118 ASDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888888777776654
No 23
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.57 E-value=53 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027180 175 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 205 (227)
Q Consensus 175 ~~yVLs~Fs~eE~~~l~~~i~~a~eal~~~i 205 (227)
.+-+++.|+++|++.+..++.+..+.++.+.
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~ 163 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELH 163 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888887777776554
No 24
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.52 E-value=1.3e+02 Score=20.98 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHHHHHHH-------HHHHHHHHHhCHHHHHHhhhc
Q 027180 180 QKFSPIEREQIDAALEQG-------VEAVRTLVLNGFDQNISRFNM 218 (227)
Q Consensus 180 s~Fs~eE~~~l~~~i~~a-------~eal~~~i~~g~~~amn~~n~ 218 (227)
+.+|.+|.+.|++++... .+.|-..+.+..+.+.++|+.
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 579999999999887654 344444444567777777764
No 25
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.41 E-value=81 Score=24.72 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 027180 179 LQKFSPIEREQIDAALEQGVE 199 (227)
Q Consensus 179 Ls~Fs~eE~~~l~~~i~~a~e 199 (227)
||.++++|++.|.+++.+..+
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~ 27 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEK 27 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHH
Confidence 578899999999999987544
Done!