BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027181
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL
LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE
EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL
FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVRVRT

High Scoring Gene Products

Symbol, full name Information P value
AT5G11960 protein from Arabidopsis thaliana 1.2e-81

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027181
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2143044 - symbol:AT5G11960 "AT5G11960" species...   819  1.2e-81   1


>TAIR|locus:2143044 [details] [associations]
            symbol:AT5G11960 "AT5G11960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR008521 Pfam:PF05653 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0015095 EMBL:AY093077
            EMBL:AY128765 IPI:IPI00517985 RefSeq:NP_196757.2 UniGene:At.44760
            PRIDE:Q8RWH8 EnsemblPlants:AT5G11960.1 GeneID:831069
            KEGG:ath:AT5G11960 TAIR:At5g11960 eggNOG:NOG288347
            HOGENOM:HOG000030482 InParanoid:Q8RWH8 OMA:ERTHSIR PhylomeDB:Q8RWH8
            ProtClustDB:CLSN2690154 ArrayExpress:Q8RWH8 Genevestigator:Q8RWH8
            Uniprot:Q8RWH8
        Length = 344

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 160/224 (71%), Positives = 174/224 (77%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQVR 224
             FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQ R
Sbjct:   181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTR 224


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.142   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       197   0.00082  111 3  11 22  0.36    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  165 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.12u 0.11s 14.23t   Elapsed:  00:00:01
  Total cpu time:  14.12u 0.11s 14.23t   Elapsed:  00:00:01
  Start:  Fri May 10 03:34:13 2013   End:  Fri May 10 03:34:14 2013

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