Query 027181
Match_columns 227
No_of_seqs 155 out of 454
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 3.8E-09 1.3E-13 81.2 13.1 99 4-116 3-102 (110)
2 2i68_A Protein EMRE; transmemb 98.8 8.2E-09 2.8E-13 82.6 8.2 98 5-116 4-102 (137)
3 3o7q_A L-fucose-proton symport 20.4 3.8E+02 0.013 22.4 9.4 36 37-72 249-284 (438)
4 2zt9_E Cytochrome B6-F complex 17.4 1.5E+02 0.005 17.4 3.2 16 170-185 12-27 (31)
5 1vf5_E Protein PET L; photosyn 9.9 1.4E+02 0.0049 17.5 1.6 15 170-184 13-27 (32)
6 2zy9_A Mg2+ transporter MGTE; 9.1 9.9E+02 0.034 21.4 8.9 11 10-20 346-356 (473)
7 2nr1_A NR1 M2, M2; receptor, s 4.8 5.6E+02 0.019 14.4 2.6 16 7-22 7-22 (27)
8 3arc_J Photosystem II reaction 4.8 6E+02 0.02 15.5 2.6 11 44-54 7-17 (40)
9 2hac_A T-cell surface glycopro 4.5 3.5E+02 0.012 16.0 1.4 20 81-100 12-31 (33)
10 4gc0_A D-xylose-proton symport 4.0 1.6E+03 0.055 18.7 11.0 56 43-98 83-156 (491)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.05 E-value=3.8e-09 Score=81.17 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhh-hhHHH
Q 027181 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (227)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl-~~~~l 82 (227)
+.++-+++.++...++...|++.. .-+.+++..+..+..+++.+...|+...|++.+.|+ ...+.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~--------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 445667888999999999998731 112356678888999999999999999999999999 79999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (227)
Q Consensus 83 ~~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~ 116 (227)
+++.+++.+++||+++..+|.|+.+++.|++++.
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998885
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.84 E-value=8.2e-09 Score=82.62 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHhh-hhHHHH
Q 027181 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA 83 (227)
Q Consensus 5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~plsvVQpl-~~~~l~ 83 (227)
.++-+++.++...++.+.|++.. ..+.+++..+..+..+++.+...++...|++.+.|+ ...+.+
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~g--------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 35566788889999999998631 112355678999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 027181 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (227)
Q Consensus 84 ~t~~ls~~~l~~rl~~~ew~gv~l~~~Gv~~l~ 116 (227)
++.+++.+++||+++..+|+|+.+++.|++++.
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998885
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.36 E-value=3.8e+02 Score=22.37 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=24.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 027181 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS 72 (227)
Q Consensus 37 ~~~~~llr~~~W~~G~~~~~~G~~l~~~AL~~~pls 72 (227)
+...+.+|+|.++............+..-..+.|..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899998877776666665555555566665
No 4
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=17.38 E-value=1.5e+02 Score=17.36 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027181 170 EIIYGLESGILFGMAS 185 (227)
Q Consensus 170 a~~lg~aaG~~fG~~A 185 (227)
+...|+++|+.||+-+
T Consensus 12 ~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999999999865
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=9.92 E-value=1.4e+02 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027181 170 EIIYGLESGILFGMA 184 (227)
Q Consensus 170 a~~lg~aaG~~fG~~ 184 (227)
+...|+++|+.||+-
T Consensus 13 ~~~f~iA~GL~fGlr 27 (32)
T 1vf5_E 13 ALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 578889999988864
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.08 E-value=9.9e+02 Score=21.37 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 027181 10 AATAGNNIGKV 20 (227)
Q Consensus 10 ~aA~~~a~g~v 20 (227)
+...+.|+|+.
T Consensus 346 v~~~gGn~Gtq 356 (473)
T 2zy9_A 346 LLGTGGNTGNQ 356 (473)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhcCcHHHH
Confidence 33334455553
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=4.79 E-value=5.6e+02 Score=14.35 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027181 7 LTLAATAGNNIGKVLQ 22 (227)
Q Consensus 7 lAl~aA~~~a~g~vlQ 22 (227)
+-+.+|.++.+|..+-
T Consensus 7 ~~l~aa~wF~WGvlln 22 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhhee
Confidence 4567888888887653
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=4.76 E-value=6e+02 Score=15.54 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=7.9
Q ss_pred hhhhHHHHHHH
Q 027181 44 VNKAWVIGFLM 54 (227)
Q Consensus 44 r~~~W~~G~~~ 54 (227)
|-|.|+.|+..
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 45789887764
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.54 E-value=3.5e+02 Score=15.95 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhccccchh
Q 027181 81 GLAILSIFSHFYLKEVMNAV 100 (227)
Q Consensus 81 ~l~~t~~ls~~~l~~rl~~~ 100 (227)
-++...++...+.|+|+++.
T Consensus 12 L~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 12 LFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34556667777788887653
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=4.02 E-value=1.6e+03 Score=18.67 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH------------------HHhhcchhHHHhhhhHHHHHHHHHHHHHhccccc
Q 027181 43 AVNKAWVIGFLMDIFGALLMLR------------------ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMN 98 (227)
Q Consensus 43 lr~~~W~~G~~~~~~G~~l~~~------------------AL~~~plsvVQpl~~~~l~~t~~ls~~~l~~rl~ 98 (227)
=|++....+..+..++.+++.. |-++.-+.+..-+.+.+.-...+.+..+..|-.+
T Consensus 83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556677888888888887763 3334445566667777777777778888888543
Done!