Query 027181
Match_columns 227
No_of_seqs 155 out of 454
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 09:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027181.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027181hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 27.2 34 0.0025 18.3 3.2 16 169-184 12-27 (32)
2 d1rh5b_ f.23.28.1 (B:) Preprot 6.0 2.5E+02 0.018 16.9 3.2 21 95-115 16-37 (56)
3 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 5.6E+02 0.041 18.2 5.7 8 42-49 3-10 (417)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 4.0 1.9E+02 0.014 15.7 1.4 9 45-53 2-10 (34)
5 d2p7tc1 f.14.1.1 (C:86-119) Po 2.6 4.8E+02 0.035 13.6 2.8 20 73-92 11-30 (34)
6 d1kqfb2 f.23.22.1 (B:246-290) 1.6 8.3E+02 0.06 13.7 2.7 12 75-86 13-24 (45)
7 d1q90n_ f.23.27.1 (N:) PetN su 1.5 7.4E+02 0.054 12.6 2.9 18 8-25 12-29 (31)
8 d1uspa_ d.227.1.1 (A:) Organic 1.4 1.2E+03 0.084 14.5 3.3 21 6-26 49-69 (137)
9 d1ukka_ d.227.1.1 (A:) Hypothe 1.2 1.3E+03 0.097 14.4 3.3 21 6-26 50-70 (141)
10 d1cola_ f.1.1.1 (A:) Colicin A 1.2 1.5E+03 0.11 16.3 3.7 20 75-94 166-185 (197)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.20 E-value=34 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.783 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027181 169 EEIIYGLESGILFGMA 184 (227)
Q Consensus 169 ~a~~lg~aaG~~fG~~ 184 (227)
-|+++|.+.|+.|+.-
T Consensus 12 ialffgiavgiifaik 27 (32)
T d2e74e1 12 IALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeEE
Confidence 4789999999999764
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.01 E-value=2.5e+02 Score=16.93 Aligned_cols=21 Identities=5% Similarity=0.184 Sum_probs=12.0
Q ss_pred cccchhHHHHHHH-HHHHHHHh
Q 027181 95 EVMNAVDWMGITL-AGIGTIGV 115 (227)
Q Consensus 95 ~rl~~~ew~gv~l-~~~Gv~~l 115 (227)
+++++.|..=++. +.+|..++
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~ 37 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLL 37 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3677777765554 33454444
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.75 E-value=5.6e+02 Score=18.15 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=4.5
Q ss_pred HhhhhhHH
Q 027181 42 YAVNKAWV 49 (227)
Q Consensus 42 llr~~~W~ 49 (227)
++|||.+|
T Consensus 3 ~lkn~~~~ 10 (417)
T d1pv7a_ 3 YLKNTNFW 10 (417)
T ss_dssp HHHSHHHH
T ss_pred cccCchHH
Confidence 45666544
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.02 E-value=1.9e+02 Score=15.69 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=5.7
Q ss_pred hhhHHHHHH
Q 027181 45 NKAWVIGFL 53 (227)
Q Consensus 45 ~~~W~~G~~ 53 (227)
-|.|+.|+.
T Consensus 2 iPLWlv~tv 10 (34)
T d2axtj1 2 IPLWIVATV 10 (34)
T ss_dssp CCHHHHHHH
T ss_pred CcEEEeeeh
Confidence 466776665
No 5
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.60 E-value=4.8e+02 Score=13.63 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=11.6
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 027181 73 VIQPVSGCGLAILSIFSHFY 92 (227)
Q Consensus 73 vVQpl~~~~l~~t~~ls~~~ 92 (227)
.|.-+...+++++++...+.
T Consensus 11 mvagits~glv~aa~atwfv 30 (34)
T d2p7tc1 11 MVAGITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccchhhhHHHHHHHHhh
Confidence 34455666777776644443
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=1.63 E-value=8.3e+02 Score=13.65 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=5.1
Q ss_pred HhhhhHHHHHHH
Q 027181 75 QPVSGCGLAILS 86 (227)
Q Consensus 75 Qpl~~~~l~~t~ 86 (227)
.|+...++..++
T Consensus 13 Kpl~~~~~~~~~ 24 (45)
T d1kqfb2 13 KPLAAAGFIATF 24 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 7
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.51 E-value=7.4e+02 Score=12.63 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027181 8 TLAATAGNNIGKVLQKKG 25 (227)
Q Consensus 8 Al~aA~~~a~g~vlQ~~a 25 (227)
|+++.+.++..-|.+.|+
T Consensus 12 a~~atfsfslslvvwgrs 29 (31)
T d1q90n_ 12 ATCVMFSFSLSLVVWGRS 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhheeeEEEEEEecc
Confidence 556777777777777664
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=1.40 E-value=1.2e+03 Score=14.54 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027181 6 CLTLAATAGNNIGKVLQKKGT 26 (227)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa 26 (227)
+.|+.+.+...+..+.++++.
T Consensus 49 laAlasC~~~t~~~~a~~~gi 69 (137)
T d1uspa_ 49 AAGYAACFQGALGVVSRRQKI 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 345555555666777777775
No 9
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=1.22 E-value=1.3e+03 Score=14.42 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027181 6 CLTLAATAGNNIGKVLQKKGT 26 (227)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa 26 (227)
+.|+.+.+...+..+.|+++.
T Consensus 50 laala~C~~~~~~~~a~~~g~ 70 (141)
T d1ukka_ 50 AAAHAGCFSMALAASLEREGF 70 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 344555555667777888765
No 10
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.21 E-value=1.5e+03 Score=16.32 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=12.5
Q ss_pred HhhhhHHHHHHHHHHHHHhc
Q 027181 75 QPVSGCGLAILSIFSHFYLK 94 (227)
Q Consensus 75 Qpl~~~~l~~t~~ls~~~l~ 94 (227)
.|++..+++.+.+.+++.-.
T Consensus 166 ~~iGI~g~li~~~v~alIdd 185 (197)
T d1cola_ 166 IAVGIAGILLAAVVGALIDD 185 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHhhH
Confidence 45666666677777766544
Done!