BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027182
MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGK
MEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSV
VLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQ
YAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKAPKYGA

High Scoring Gene Products

Symbol, full name Information P value
AT5G11810 protein from Arabidopsis thaliana 7.8e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027182
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2181940 - symbol:AT5G11810 "AT5G11810" species...   566  7.8e-55   1


>TAIR|locus:2181940 [details] [associations]
            symbol:AT5G11810 "AT5G11810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AL163814 UniGene:At.32209 EMBL:BT025870 EMBL:AK118680
            IPI:IPI00527990 PIR:T48540 RefSeq:NP_196742.1
            ProteinModelPortal:Q9LYF0 PaxDb:Q9LYF0 PRIDE:Q9LYF0 DNASU:831054
            EnsemblPlants:AT5G11810.1 GeneID:831054 KEGG:ath:AT5G11810
            TAIR:At5g11810 eggNOG:NOG308833 HOGENOM:HOG000238767
            InParanoid:Q9LYF0 OMA:KAPKYGA PhylomeDB:Q9LYF0
            ProtClustDB:CLSN2686799 Genevestigator:Q9LYF0 Uniprot:Q9LYF0
        Length = 306

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 117/227 (51%), Positives = 155/227 (68%)

Query:     1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGK 60
             MGLKAAL+T +S L SFG  +G   LQL+E+ + SDS    P D  +S+LLKLLG + GK
Sbjct:    90 MGLKAALVTDSSTLTSFGKLIGLDVLQLSEICQESDSF---PSDATSSKLLKLLGFEGGK 146

Query:    61 MEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSV 120
               +V+ +DLV VH G  E  N        +++  +++L+  I+ MAQP +E+ SRLHLSV
Sbjct:   147 CLDVNLYDLVFVHFGVDEYNN-------GNNMGILDSLIGSIMGMAQPGSEILSRLHLSV 199

Query:   121 VLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQ 180
             VLSYG V + D S   +    ++ +     L PRQSYTM+GE  R+DVRH+CPML++QWQ
Sbjct:   200 VLSYGSVTDKDVSVFPIKTPQEDINPAFIGLVPRQSYTMRGEKTRDDVRHYCPMLVAQWQ 259

Query:   181 YAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKAPKYGA 227
             + VTRKD+ +T SF+  K+  G L IPADRF+HEVAFKLWKAPKYGA
Sbjct:   260 HGVTRKDLVDTLSFEALKKLCGNLVIPADRFIHEVAFKLWKAPKYGA 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       227   0.00079  113 3  11 22  0.41    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.37u 0.09s 19.46t   Elapsed:  00:00:01
  Total cpu time:  19.37u 0.09s 19.46t   Elapsed:  00:00:01
  Start:  Fri May 10 03:35:06 2013   End:  Fri May 10 03:35:07 2013

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