Query 027183
Match_columns 227
No_of_seqs 129 out of 198
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 1.7E-80 3.6E-85 556.7 17.1 215 1-226 1-216 (303)
2 PF04116 FA_hydroxylase: Fatty 98.3 2.7E-07 5.9E-12 67.8 1.3 37 151-188 2-41 (114)
3 TIGR02230 ATPase_gene1 F0F1-AT 92.4 0.96 2.1E-05 36.2 7.9 65 98-166 31-98 (100)
4 PLN02434 fatty acid hydroxylas 92.0 0.7 1.5E-05 41.6 7.6 40 147-186 84-133 (237)
5 COG3000 ERG3 Sterol desaturase 91.4 0.93 2E-05 40.2 7.6 36 147-182 96-132 (271)
6 PLN02869 fatty aldehyde decarb 91.3 0.35 7.7E-06 49.0 5.4 72 137-208 118-198 (620)
7 PF11947 DUF3464: Protein of u 80.3 12 0.00026 32.0 8.1 57 91-158 56-115 (153)
8 KOG0872 Sterol C5 desaturase [ 78.0 8.5 0.00018 36.5 7.0 43 137-182 122-165 (312)
9 TIGR02908 CoxD_Bacillus cytoch 74.3 21 0.00045 29.3 7.5 40 124-163 69-110 (110)
10 PF06072 Herpes_US9: Alphaherp 70.4 12 0.00027 28.0 4.9 23 90-112 16-39 (60)
11 PRK03557 zinc transporter ZitB 59.8 34 0.00074 30.9 6.7 69 91-166 65-144 (312)
12 TIGR01297 CDF cation diffusion 56.3 11 0.00024 32.0 2.9 108 91-209 36-153 (268)
13 COG1230 CzcD Co/Zn/Cd efflux s 46.1 72 0.0016 29.9 6.6 98 91-206 68-179 (296)
14 COG0053 MMT1 Predicted Co/Zn/C 44.4 36 0.00077 31.1 4.3 111 91-210 59-177 (304)
15 KOG0874 Sphingolipid hydroxyla 40.9 47 0.001 31.1 4.5 32 150-182 126-160 (287)
16 PRK09509 fieF ferrous iron eff 40.8 38 0.00082 30.1 3.9 109 92-209 58-174 (299)
17 PF03824 NicO: High-affinity n 39.0 2.3E+02 0.0051 24.9 8.5 60 105-164 39-103 (282)
18 PRK11463 fxsA phage T7 F exclu 38.2 1.2E+02 0.0025 25.4 6.2 30 126-155 54-83 (148)
19 PF11998 DUF3493: Protein of u 36.4 2E+02 0.0043 22.2 7.8 51 105-163 22-72 (75)
20 PF08426 ICE2: ICE2; InterPro 33.8 77 0.0017 31.3 5.0 53 99-153 145-199 (412)
21 PF04186 FxsA: FxsA cytoplasmi 33.3 1.6E+02 0.0034 23.7 6.0 32 125-156 49-80 (119)
22 PF03334 PhaG_MnhG_YufB: Na+/H 31.1 1.8E+02 0.0039 21.9 5.6 54 108-166 28-81 (81)
23 PF01925 TauE: Sulfite exporte 30.8 3E+02 0.0064 22.8 7.4 33 135-167 188-220 (240)
24 PF04834 Adeno_E3_14_5: Early 30.5 47 0.001 26.9 2.5 32 99-130 16-48 (97)
25 COG5547 Small integral membran 30.3 13 0.00028 28.0 -0.6 26 195-220 14-39 (62)
26 PF04678 DUF607: Protein of un 30.2 3.4E+02 0.0074 23.0 7.9 38 93-132 83-120 (180)
27 PF00689 Cation_ATPase_C: Cati 28.4 1.4E+02 0.0031 23.7 5.0 57 103-162 124-181 (182)
28 KOG0873 C-4 sterol methyl oxid 27.2 2E+02 0.0044 27.1 6.4 71 119-192 93-166 (283)
29 PF04688 Phage_holin: Phage ly 26.4 1.1E+02 0.0023 21.5 3.4 28 137-164 4-31 (47)
30 COG3030 FxsA Protein affecting 26.2 2E+02 0.0043 24.9 5.7 35 123-157 52-86 (158)
31 PF06738 DUF1212: Protein of u 24.5 4E+02 0.0086 21.8 7.6 59 91-159 86-144 (193)
32 PF02319 E2F_TDP: E2F/DP famil 24.4 46 0.001 24.2 1.4 29 90-118 28-59 (71)
33 PRK12675 putative monovalent c 24.2 2.5E+02 0.0055 22.5 5.7 55 108-167 33-88 (104)
34 PRK12585 putative monovalent c 24.0 1.7E+02 0.0038 26.4 5.1 56 108-167 39-95 (197)
35 PRK12672 putative monovalent c 23.8 2.7E+02 0.0058 22.7 5.8 60 108-167 37-101 (118)
36 cd03510 Rhizobitoxine-FADS-lik 23.4 2E+02 0.0042 24.0 5.1 6 177-182 77-82 (175)
37 PF04678 DUF607: Protein of un 22.5 4.8E+02 0.01 22.1 8.1 54 101-163 87-141 (180)
38 PF13347 MFS_2: MFS/sugar tran 22.0 3.6E+02 0.0078 24.2 6.8 58 105-167 229-287 (428)
39 PF11893 DUF3413: Domain of un 21.9 5.9E+02 0.013 22.9 8.2 61 102-164 83-156 (253)
40 cd03505 Delta9-FADS-like The D 21.8 3.9E+02 0.0085 23.1 6.8 38 114-151 11-48 (178)
41 PLN02220 delta-9 acyl-lipid de 20.5 2.2E+02 0.0048 26.5 5.3 29 140-171 55-83 (299)
42 PF00664 ABC_membrane: ABC tra 20.2 4.2E+02 0.0091 20.5 7.7 19 132-150 250-268 (275)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=1.7e-80 Score=556.70 Aligned_cols=215 Identities=62% Similarity=1.027 Sum_probs=188.2
Q ss_pred Ccccccc-ccccccccccccccCCCCCCCCCCCcccCCcccccccccccccCCCCceeEEEEeccccccccccccchhhh
Q 027183 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (227)
Q Consensus 1 ma~~~s~-a~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~vc~v~~~~~~~~~~~~~~~~~~ 79 (227)
||+|||+ |+|++|.+. ..+..+.|+++..|+|.... .+.||| ++++||||+||+++.+++++++|+++
T Consensus 1 ma~~~~~~~~t~~~l~~-----~~~~~~~~~~~~~f~~~~~~---~~~~~~---~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLHR-----SDFRLNHPISLAVFPPSLRF---NGFRRR---KILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCcc-----cCccCCCCcccccCCHHHHh---hhcccC---CceeEEEEeccccccccccccchhhh
Confidence 8999998 999999643 35555566667778886311 122344 56899999999999887777666654
Q ss_pred hhhhhhhchHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Q 027183 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (227)
Q Consensus 80 ~~~~~~~~~~~r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf 159 (227)
++.+++...++|++||++|||+||+||++||||||+||||||++||||||+|||||||||+.||+++++|+++||++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCCCcccchhhhhhhHHHHHHHHHhhhcccCCccccccccccC
Q 027183 160 WARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAVSS 226 (227)
Q Consensus 160 ~Aw~aHKylmHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAiaL~~~Gf~~~gl~~~lcfGaGig 226 (227)
||||+|||+|||+||+||+|||+|++|+||+||+|||+||+|||+|+++|+++++++|++|||+|+|
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlG 216 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLG 216 (303)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999877765
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.28 E-value=2.7e-07 Score=67.82 Aligned_cols=37 Identities=35% Similarity=0.907 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhhhhccCCCCC-CCCc
Q 027183 151 VGAAVGMEFWARWAHKALWH--ASLWHMHESHHRPR-EGPF 188 (227)
Q Consensus 151 lga~vgMEf~Aw~aHKylmH--G~LW~lHksHH~p~-~G~F 188 (227)
+++++.+|++.||+|| +|| +++|.+|+.||++. ..++
T Consensus 2 ~~~~l~~d~~~Y~~HR-l~H~~~~l~~~H~~HH~~~~~~~~ 41 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHR-LLHKIPFLWRIHKVHHSPKNPTPL 41 (114)
T ss_pred eeeHHHHHHHHHHHHH-HHhcCchHHHHHHHHhCCcccCch
Confidence 5678999999999999 999 68999999999763 3455
No 3
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=92.41 E-value=0.96 Score=36.18 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhcc---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 98 RKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME---GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (227)
Q Consensus 98 rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~---~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHK 166 (227)
||+.+|..+.--+.+|++|+.-.+...+-+=.=+-++ +++.. +...++.+|.++|+=.+=.|+||
T Consensus 31 ~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~----~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 31 RKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFS----WTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3335788899899999999865543333222222232 34332 33335566666666555455554
No 4
>PLN02434 fatty acid hydroxylase
Probab=92.03 E-value=0.7 Score=41.60 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhhccCCC-CCCC
Q 027183 147 FALSVGAAVGMEFWARWAHKALWHA---------SLWHMHESHHR-PREG 186 (227)
Q Consensus 147 ~~l~lga~vgMEf~Aw~aHKylmHG---------~LW~lHksHH~-p~~G 186 (227)
+++++++++.-=++-|..||++.|. ....+|..||+ |.++
T Consensus 84 ~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~ 133 (237)
T PLN02434 84 VLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDG 133 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCC
Confidence 4444555555566678899999994 45568999994 6654
No 5
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=91.39 E-value=0.93 Score=40.17 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCC
Q 027183 147 FALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHR 182 (227)
Q Consensus 147 ~~l~lga~vgMEf~Aw~aHKylmHG-~LW~lHksHH~ 182 (227)
.+..+.+++.-|++-+|+||..=+. ++|.+|+-||.
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~ 132 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHS 132 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 4455668889999999999997777 47999999995
No 6
>PLN02869 fatty aldehyde decarbonylase
Probab=91.29 E-value=0.35 Score=48.97 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=42.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCCCC-CC-------CcccchhhhhhhHHHHHHHHH
Q 027183 137 EVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHRPR-EG-------PFELNDVFAIINAVPAIALLS 207 (227)
Q Consensus 137 ~~p~~em~~t~~l~lga~vgMEf~Aw~aHKylmHG-~LW~lHksHH~p~-~G-------~FE~NDlFaiifAvpAiaL~~ 207 (227)
.+|+-..-+.++.++.=+..+|++-+|.||..=|. ++|..|+-||... .. |+|-.=.+.+++++|.+.+++
T Consensus 118 ~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~ 197 (620)
T PLN02869 118 HMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIF 197 (620)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 34444333333333434445899999999986554 5799999999742 22 332222345566777765544
Q ss_pred h
Q 027183 208 F 208 (227)
Q Consensus 208 ~ 208 (227)
.
T Consensus 198 ~ 198 (620)
T PLN02869 198 T 198 (620)
T ss_pred c
Confidence 3
No 7
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=80.27 E-value=12 Score=32.00 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccC--CCccHHHHH-HHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEG--GEVPLAEMF-GTFALSVGAAVGME 158 (227)
Q Consensus 91 r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~--g~~p~~em~-~t~~l~lga~vgME 158 (227)
-|++|+.|+ |+-++||-....+++.-=|+|-.+. .|+|-.-.+ .+++.+..+++|.-
T Consensus 56 ~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGis 115 (153)
T PF11947_consen 56 VVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGIS 115 (153)
T ss_pred HHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhh
Confidence 467777664 4556677666666666667776654 577755554 44444455666543
No 8
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=78.00 E-value=8.5 Score=36.48 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=34.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCC
Q 027183 137 EVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHA-SLWHMHESHHR 182 (227)
Q Consensus 137 ~~p~~em~~t~~l~lga~vgMEf~Aw~aHKylmHG-~LW~lHksHH~ 182 (227)
|.||.+.+..+.+++ +.-||.-.|+||.+=|. +.|.+|+-||.
T Consensus 122 ~~gw~~~~~~i~~fl---fF~Df~iYw~HR~lH~~~vy~~LH~~HH~ 165 (312)
T KOG0872|consen 122 EYGWFLLFVSIFLFL---FFTDFGIYWAHRELHHRGVYKRLHKPHHI 165 (312)
T ss_pred cccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhcchhhh
Confidence 788888777776654 56788899999998775 57999999994
No 9
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=74.33 E-value=21 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHhhhhhhhcc--CCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 124 AVYYRFWWQME--GGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 124 a~yyrf~w~m~--~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
.|-.+|.-||+ |-+.+..=|+..+++.+-+.++-..|.||
T Consensus 69 ~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw~ 110 (110)
T TIGR02908 69 AFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITWW 110 (110)
T ss_pred HHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678888886 45677777888888888888888888886
No 10
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=70.37 E-value=12 Score=28.00 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHHHH-HhhhhhhhHHHHHHHH
Q 027183 90 ARVAEKL-ARKRSERFTYLVAAVM 112 (227)
Q Consensus 90 ~r~~~~~-~rk~~er~ty~~aa~~ 112 (227)
.|+-++- ++|+..|.+++..++.
T Consensus 16 ~RvGr~q~~~r~RrRrc~~~v~~v 39 (60)
T PF06072_consen 16 RRVGRQQHASRRRRRRCRLAVAIV 39 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5888777 7777788888655443
No 11
>PRK03557 zinc transporter ZitB; Provisional
Probab=59.79 E-value=34 Score=30.89 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=34.1
Q ss_pred HHHHHHHhhhh-h-------hhHHHHHHHHHhhhhhHHHHHHHh---hhhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRS-E-------RFTYLVAAVMSSFGITSMAVMAVY---YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (227)
Q Consensus 91 r~~~~~~rk~~-e-------r~ty~~aa~~ss~gi~s~a~~a~y---yrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf 159 (227)
-++.|+++|.. + |..++. +...++.+..+++..+| .|+ .++-+++.. ..+.+.+.+++.-++
T Consensus 65 l~a~~~s~kp~d~~hpyG~~r~E~l~-al~~~~~l~~~~~~i~~eai~~l---~~~~~~~~~---~~~~v~~~~~~~~~~ 137 (312)
T PRK03557 65 LLAVQFSRRPPTIRHTFGWLRLTTLA-AFVNAIALVVITILIVWEAIERF---RTPRPVAGG---MMMAIAVAGLLANIL 137 (312)
T ss_pred HHHHHHhcCCCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCccccch---HHHHHHHHHHHHHHH
Confidence 46677777664 4 444444 44445555555555554 343 233333321 122333445566666
Q ss_pred HHHHHHH
Q 027183 160 WARWAHK 166 (227)
Q Consensus 160 ~Aw~aHK 166 (227)
..|+.++
T Consensus 138 ~~~~~~~ 144 (312)
T PRK03557 138 SFWLLHH 144 (312)
T ss_pred HHHHHhc
Confidence 6665543
No 12
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=56.27 E-value=11 Score=31.98 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 91 r~~~~~~rk~-~er~ty------~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
-++.|.++|+ .++++| -+++...++.+..+++...|==+..-+++.+.+.. ...+.+.+.+++...+.+|+
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~ 113 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDG--GTMLIVAIVGLIVNLILALY 113 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--hhHHHHHHHHHHHHHHHHHH
Confidence 3556776666 344443 13444445555555555444222222344322222 12233445566667777766
Q ss_pred HHHHHHHhhhhhhhccCCC---CCCCCcccchhhhhhhHHHHHHHHHhh
Q 027183 164 AHKALWHASLWHMHESHHR---PREGPFELNDVFAIINAVPAIALLSFG 209 (227)
Q Consensus 164 aHKylmHG~LW~lHksHH~---p~~G~FE~NDlFaiifAvpAiaL~~~G 209 (227)
..+. | +..+. ..++.--.+|++.-+.++.++.+..+|
T Consensus 114 ~~~~---~------~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~ 153 (268)
T TIGR01297 114 LHRV---G------HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG 153 (268)
T ss_pred HHHh---C------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 1 11111 123344578888887777777777776
No 13
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=46.13 E-value=72 Score=29.86 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=56.9
Q ss_pred HHHHHHHhhhh-hhhHH------HHHHHHHhhhhhHHHHHHHh---hhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVY---YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFW 160 (227)
Q Consensus 91 r~~~~~~rk~~-er~ty------~~aa~~ss~gi~s~a~~a~y---yrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~ 160 (227)
-+|.+++||++ .|+|| ..+|..+.+-+...++.-+| .||. +.-+++..+|+..-++-+ +.==+.
T Consensus 68 l~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~---~P~~i~~~~ml~va~~GL---~vN~~~ 141 (296)
T COG1230 68 LIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLL---APPPIHYSGMLVVAIIGL---VVNLVS 141 (296)
T ss_pred HHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccchHHHHHHHH---HHHHHH
Confidence 46788887775 45677 45777777666666666555 5653 445677667764433322 222222
Q ss_pred HHHHHHHHHHhhhhhhhccCCC--CCCC-Ccc-cchhhhhhhHHHHHHHH
Q 027183 161 ARWAHKALWHASLWHMHESHHR--PREG-PFE-LNDVFAIINAVPAIALL 206 (227)
Q Consensus 161 Aw~aHKylmHG~LW~lHksHH~--p~~G-~FE-~NDlFaiifAvpAiaL~ 206 (227)
+ |-+|++||+ .-+| .+. .+|...=+-++.+-.++
T Consensus 142 a------------~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i 179 (296)
T COG1230 142 A------------LLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVI 179 (296)
T ss_pred H------------HHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 556666442 2244 444 49998877776664444
No 14
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=44.40 E-value=36 Score=31.11 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHhhhhhh--------hHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRSER--------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (227)
Q Consensus 91 r~~~~~~rk~~er--------~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw 162 (227)
=++-|.++|+..| .-|+ ++...++.|...++...|.=+.--.. ..|..-....+.+.+++.+.||.+.+
T Consensus 59 l~~l~~s~kp~d~~HpyGh~k~E~l-~sl~~~~~i~~~g~~i~~~a~~~~~~--~~~~~~~~~~~~v~l~s~~~~~~l~~ 135 (304)
T COG0053 59 LIGLRISSKPPDRDHPYGHGKAETL-ASLIVSILIFAAGFEILLEAIKRLIS--PQPVEPPLLALGVALISIVIKEALYR 135 (304)
T ss_pred HHHHHHhcCCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3567788887644 3333 44444555555555555544333333 33333344566777889999999999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCcccchhhhhhhHHHHHHHHHhhh
Q 027183 163 WAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGF 210 (227)
Q Consensus 163 ~aHKylmHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAiaL~~~Gf 210 (227)
+.+|.-=--- |-=-..++.--++|++.-+-++.+++...+|+
T Consensus 136 ~~~~~~kk~~------S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~ 177 (304)
T COG0053 136 YLRRVGKKTN------SQALIADALHHRSDVLTSLAVLVGLLGSLLGW 177 (304)
T ss_pred HHHHHHHHhC------CHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9988621110 00001122223459999999998888777774
No 15
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=40.93 E-value=47 Score=31.12 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhhh-hhccCCC
Q 027183 150 SVGAAVGMEFWARWAHKALWHA--SLWH-MHESHHR 182 (227)
Q Consensus 150 ~lga~vgMEf~Aw~aHKylmHG--~LW~-lHksHH~ 182 (227)
.+.+++...-|-++.||| ||= +|.. +|..||+
T Consensus 126 ~f~aflviDtWQYF~HRy-mH~NK~LYk~iHs~HHr 160 (287)
T KOG0874|consen 126 FFAAFLVIDTWQYFLHRY-MHMNKFLYKHIHSQHHR 160 (287)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhcee
Confidence 466788889999999999 665 5654 5777774
No 16
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=40.80 E-value=38 Score=30.12 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=46.4
Q ss_pred HHHHHHhhh-hhh-------hHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 92 VAEKLARKR-SER-------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 92 ~~~~~~rk~-~er-------~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
++-|+++|+ .++ ..|+.+ ...++-+..+++...|-=+.--+++++.+...+ .+.+.+.+++...+..++
T Consensus 58 ~~~~~s~k~~d~~~pyG~~r~E~l~~-l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~--~l~~~~~~~v~~~~~~~~ 134 (299)
T PRK09509 58 LVVRYSLQPADDEHTFGHGKAESLAA-LAQSMFISGSALFLFLTGIQHLISPTPMNDPGV--GIIVTLVALICTLILVTF 134 (299)
T ss_pred HHHHHhCCCCCCCCCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchh--HHHHHHHHHHHHHHHHHH
Confidence 456666554 233 334443 334444444444444322221234555443332 233344555666665555
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCcccchhhhhhhHHHHHHHHHhh
Q 027183 164 AHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFG 209 (227)
Q Consensus 164 aHKylmHG~LW~lHksHH~p~~G~FE~NDlFaiifAvpAiaL~~~G 209 (227)
.++.. +. ++|---..++.=-+||++.=..++.++.+.++|
T Consensus 135 ~~~~~-~~-----~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~g 174 (299)
T PRK09509 135 QRWVV-RK-----TQSQAVRADMLHYQSDVMMNGAILLALGLSWYG 174 (299)
T ss_pred HHHHH-HH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44321 10 111000112222358888765555555544444
No 17
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=38.96 E-value=2.3e+02 Score=24.90 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQM-----EGGEVPLAEMFGTFALSVGAAVGMEFWARWA 164 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~a~yyrf~w~m-----~~g~~p~~em~~t~~l~lga~vgMEf~Aw~a 164 (227)
.-+.-+...|++.+.+++.-+..-+.-.- +-++....++-+.+++.++....+..-.+.-
T Consensus 39 ~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~llv~~~~~~~~~~~~~~ 103 (282)
T PF03824_consen 39 VGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAVGLLVSGSFLLVIGIGNWLLLRRLRH 103 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665554433322 2255666666677777777766666666543
No 18
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=38.19 E-value=1.2e+02 Score=25.43 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=22.9
Q ss_pred hhhhhhhccCCCccHHHHHHHHHHHHHHHH
Q 027183 126 YYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (227)
Q Consensus 126 yyrf~w~m~~g~~p~~em~~t~~l~lga~v 155 (227)
..|.-=+|..|+.|-.|++-.+++.+|+++
T Consensus 54 l~~~~~~~~~G~~p~~~l~~~~~~~~gg~L 83 (148)
T PRK11463 54 LLRAQRKLARGELPAAELLDGLLLAVAGVL 83 (148)
T ss_pred HHHHHHHHHCCCCcHHHHHHhHHHHHHHHH
Confidence 334444577899999999988888888775
No 19
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=36.35 E-value=2e+02 Score=22.16 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
.++..|.++|-+|..+.... |.-. .-++.|.+-+++|=+|+++.|=+.-||
T Consensus 22 ~f~y~a~~aSa~iG~~i~~~-------rl~a-~~~l~~~l~nlaI~igava~~~~L~~~ 72 (75)
T PF11998_consen 22 RFFYGAFGASAGIGLFIFLF-------RLIA-GPDLNEALPNLAIQIGAVALFAFLFRW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHc-CccHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 45566777776666554332 1111 557889999999999999998776554
No 20
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=33.83 E-value=77 Score=31.26 Aligned_cols=53 Identities=19% Similarity=0.406 Sum_probs=35.7
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHh--hhhhhhccCCCccHHHHHHHHHHHHHH
Q 027183 99 KRSERFTYLVAAVMSSFGITSMAVMAVY--YRFWWQMEGGEVPLAEMFGTFALSVGA 153 (227)
Q Consensus 99 k~~er~ty~~aa~~ss~gi~s~a~~a~y--yrf~w~m~~g~~p~~em~~t~~l~lga 153 (227)
+||| +|++...+.|=+|.+.++.-.| |-|-|+.+-.+-.+.-...|..+++++
T Consensus 145 ~rSd--~W~I~~Li~Sg~vit~s~YfLyRIy~fp~~is~~~AtLiG~~lT~~~~L~~ 199 (412)
T PF08426_consen 145 GRSD--SWMIVSLIASGSVITASLYFLYRIYVFPWTISNLDATLIGVTLTSVVFLGL 199 (412)
T ss_pred CCCc--hhHHHHHHHHHHHHHHHHHHHHHhhccccccCcccHHHHHHHHHHHHHHHH
Confidence 3666 9999999999999888876665 667777755544444444444444443
No 21
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=33.31 E-value=1.6e+02 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=24.6
Q ss_pred HhhhhhhhccCCCccHHHHHHHHHHHHHHHHH
Q 027183 125 VYYRFWWQMEGGEVPLAEMFGTFALSVGAAVG 156 (227)
Q Consensus 125 ~yyrf~w~m~~g~~p~~em~~t~~l~lga~vg 156 (227)
+..|.--+|..|+.|-.|++-.+++.+|++.-
T Consensus 49 ~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~LL 80 (119)
T PF04186_consen 49 ALRRLQQSLRQGEMPGEELLDGALLAVGGVLL 80 (119)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 34444445678999999999999998888753
No 22
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=31.11 E-value=1.8e+02 Score=21.89 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (227)
Q Consensus 108 ~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHK 166 (227)
.++..+++|+..+.+.+.-|- .....-+-+.+..+.+.+.+-++.-..+|-+||
T Consensus 28 a~s~~~tlG~~lilig~~l~~-----~~~~~~~k~lli~~~~~lt~Pv~sh~iaraa~~ 81 (81)
T PF03334_consen 28 AASKADTLGAILILIGLALYF-----GSSWVSLKLLLIILFLLLTNPVASHAIARAAYR 81 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567888999988866655443 123345556677777778888888888888775
No 23
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=30.82 E-value=3e+02 Score=22.77 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 135 GGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 135 ~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
.|++++......+.+..++++|+-.=+|+.+|.
T Consensus 188 ~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i 220 (240)
T PF01925_consen 188 LGDVDWPMLLLSLILLPGAFLGAFLGAKLARKI 220 (240)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 789998877777888888888888888776654
No 24
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=30.53 E-value=47 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=23.0
Q ss_pred hhhhh-hHHHHHHHHHhhhhhHHHHHHHhhhhh
Q 027183 99 KRSER-FTYLVAAVMSSFGITSMAVMAVYYRFW 130 (227)
Q Consensus 99 k~~er-~ty~~aa~~ss~gi~s~a~~a~yyrf~ 130 (227)
||+|- ..|++++.+.-+++.+...++.|+||-
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 45555 467777777777777777788898763
No 25
>COG5547 Small integral membrane protein [Function unknown]
Probab=30.32 E-value=13 Score=28.03 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHhhhcccCCccccc
Q 027183 195 AIINAVPAIALLSFGFFHKGLVPGLC 220 (227)
Q Consensus 195 aiifAvpAiaL~~~Gf~~~gl~~~lc 220 (227)
.+++...|+.++.+||+..-+.--+|
T Consensus 14 glvglliAili~t~GfwKtilviil~ 39 (62)
T COG5547 14 GLVGLLIAILILTFGFWKTILVIILI 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999987654443333
No 26
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=30.16 E-value=3.4e+02 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 027183 93 AEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQ 132 (227)
Q Consensus 93 ~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~ 132 (227)
..+.++|+..|..+...+.++ +=+..-.--||.=|+|-
T Consensus 83 id~~A~~~~~~~~w~gl~~l~--~q~~~l~rLTf~e~sWD 120 (180)
T PF04678_consen 83 IDEKAEKRARRLLWGGLALLV--VQFGILARLTFWEYSWD 120 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccccc
Confidence 345555666666666655554 22222223455556665
No 27
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=28.37 E-value=1.4e+02 Score=23.67 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 103 RFTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (227)
Q Consensus 103 r~ty~~aa~~ss~gi~s~a~~a~yyrf~w~-m~~g~~p~~em~~t~~l~lga~vgMEf~Aw 162 (227)
+..|++.++..++++. +..+|.-+.=+ +.-..+|+.+.+..+++.+..++..|.+-+
T Consensus 124 ~N~~l~~~~~~~~~l~---~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~~~ei~K~ 181 (182)
T PF00689_consen 124 SNKWLLIAILISIALQ---ILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFIVDEIRKL 181 (182)
T ss_dssp GSHHHHHHHHHHHHHH---HHHHHSTTHHHHST----THHHHHCHHHHHCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH---HHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567887777766544 44455432222 333588999999999999999999998764
No 28
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=27.18 E-value=2e+02 Score=27.13 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhh-hhccCC-Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccch
Q 027183 119 SMAVMAVYYRFW-WQMEGG-EV-PLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELND 192 (227)
Q Consensus 119 s~a~~a~yyrf~-w~m~~g-~~-p~~em~~t~~l~lga~vgMEf~Aw~aHKylmHG~LW~lHksHH~p~~G~FE~ND 192 (227)
..-+...|+..- |.+..+ ++ ++.||+.-+++. ++.=|++=.|+||-.=|+++...+..+|+.-.-||-.--
T Consensus 93 ~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~---~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa 166 (283)
T KOG0873|consen 93 LPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVF---FLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSA 166 (283)
T ss_pred hhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHH---HHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhh
Confidence 333455666663 445433 33 477887777665 456689999999999899988766666655555554433
No 29
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.37 E-value=1.1e+02 Score=21.51 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 137 EVPLAEMFGTFALSVGAAVGMEFWARWA 164 (227)
Q Consensus 137 ~~p~~em~~t~~l~lga~vgMEf~Aw~a 164 (227)
.+|++|--..-+++..-.++.-.|+||=
T Consensus 4 plpi~e~~i~~~~s~v~t~~~~l~awwK 31 (47)
T PF04688_consen 4 PLPIDEEQINQLISAVFTIVTALYAWWK 31 (47)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789988877777777778888999984
No 30
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=26.23 E-value=2e+02 Score=24.91 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=27.9
Q ss_pred HHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q 027183 123 MAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGM 157 (227)
Q Consensus 123 ~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgM 157 (227)
..+++|--=+|..|++|-.||+-...+++++++.|
T Consensus 52 ~~~l~~~q~~~~~G~~P~~~ll~g~~~~vagiLLl 86 (158)
T COG3030 52 FGTLLRAQAALASGEVPGAELLDGLLLIIAGILLL 86 (158)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHhHHHHHHHHHHH
Confidence 46677777778789999999998888888877643
No 31
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=24.47 E-value=4e+02 Score=21.84 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (227)
Q Consensus 91 r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf 159 (227)
...+|+++=+++...|-.-..+-+.|+.+.+.... -||. |.|++..+++.+...+...+
T Consensus 86 ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~l--------fgg~--~~~~~~a~i~g~~~~~~~~~ 144 (193)
T PF06738_consen 86 EAIERLDEIDREPPRYPPWLVILAAGLASAAFALL--------FGGS--WIDMIVAFILGLLVGLLRQL 144 (193)
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH--------HCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 45566665555554454444444444444332221 2665 88998888877665554443
No 32
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=24.42 E-value=46 Score=24.24 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=23.8
Q ss_pred HHHHHHH---HhhhhhhhHHHHHHHHHhhhhh
Q 027183 90 ARVAEKL---ARKRSERFTYLVAAVMSSFGIT 118 (227)
Q Consensus 90 ~r~~~~~---~rk~~er~ty~~aa~~ss~gi~ 118 (227)
..+|+++ .-|-..|+-|=++-|+.++|+.
T Consensus 28 ~~ia~~l~~~~~k~~~RRlYDI~NVLealgli 59 (71)
T PF02319_consen 28 NEIADKLISENVKTQRRRLYDIINVLEALGLI 59 (71)
T ss_dssp HHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSE
T ss_pred HHHHHHHcccccccccchhhHHHHHHHHhCce
Confidence 5677777 5555788899999999999985
No 33
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.25 E-value=2.5e+02 Score=22.50 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=38.0
Q ss_pred HHHHHHhhhhhHHHHHH-HhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 108 VAAVMSSFGITSMAVMA-VYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 108 ~aa~~ss~gi~s~a~~a-~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
.++..+++|+..+.+.. +|+.+.+ .+-..+.+..+.+.+.+=++.-..+|-+++.
T Consensus 33 Aatk~~TlG~~lil~g~~l~~~~~~-----~~~~k~lli~~f~~lt~Pvaah~iaraay~~ 88 (104)
T PRK12675 33 AATKCDTGGAMGIILALALASDASL-----LIKLKFLVLAFLIAMINPMVSHAIARGAYKM 88 (104)
T ss_pred hchhhhhhhHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778899998877764 4433332 2344567777777788888888888887653
No 34
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.03 E-value=1.7e+02 Score=26.36 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhHHHHHH-HhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 108 VAAVMSSFGITSMAVMA-VYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 108 ~aa~~ss~gi~s~a~~a-~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
.++..+++|+..+.+.. +|+- +.+..+-+-.++..+++++.+-++.=..||.+|+.
T Consensus 39 AATKa~TLGv~LILlgv~l~~~----~~~~~~slklLLiIvFllLTaPVaSHaIARAAyr~ 95 (197)
T PRK12585 39 AAGISNTFGVSLLLFATVGYFF----HSGEGFNARVLLAVLFIFLTTPVASHLINRAAYDT 95 (197)
T ss_pred ccccchhhhHHHHHHHHHHHHH----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566778877766543 3331 11223445667777888888889999999988864
No 35
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.79 E-value=2.7e+02 Score=22.67 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhccCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGG-----EVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 108 ~aa~~ss~gi~s~a~~a~yyrf~w~m~~g-----~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
.++..+++|+..+.+.+.-|-..+.-+.| .+-+-+.+..+.+.+.+=++.-..+|-+|+.
T Consensus 37 Aatk~~TlG~~lil~g~~l~~~~~~~~~~~~~~~~~~~k~lli~~f~~lT~Pvaah~iaRAAy~~ 101 (118)
T PRK12672 37 GATKCTTFGTIFAVLAVVTHALYRLRLTGDPKYLQMALHSFVALIALLLTNPVGAHAIARAAHLS 101 (118)
T ss_pred hchhhhHhHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46678889988877765543222111112 2345577888888899999999999999884
No 36
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=23.37 E-value=2e+02 Score=24.04 Aligned_cols=6 Identities=67% Similarity=1.110 Sum_probs=3.2
Q ss_pred hccCCC
Q 027183 177 HESHHR 182 (227)
Q Consensus 177 HksHH~ 182 (227)
|-.||.
T Consensus 77 H~~HH~ 82 (175)
T cd03510 77 HLKHHR 82 (175)
T ss_pred HHHHhC
Confidence 555554
No 37
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=22.52 E-value=4.8e+02 Score=22.07 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027183 101 SERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMF-GTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 101 ~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~-~t~~l~lga~vgMEf~Aw~ 163 (227)
+++.+..+. -+.+|..+ +=+++++|..|. +..|.-|= .|+.+..+++++. .+||
T Consensus 87 A~~~~~~~~--w~gl~~l~-~q~~~l~rLTf~----e~sWDvMEPVTYfv~~~~~i~~--y~yf 141 (180)
T PF04678_consen 87 AEKRARRLL--WGGLALLV-VQFGILARLTFW----EYSWDVMEPVTYFVGYGTSILG--YAYF 141 (180)
T ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHHHHHhh----ccccchhhhHHHHHhHHHHHHH--HHHH
Confidence 445555543 23355555 567888999986 55555332 4455555555443 4444
No 38
>PF13347 MFS_2: MFS/sugar transport protein
Probab=22.00 E-value=3.6e+02 Score=24.20 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHh-hhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVMAVY-YRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~a~y-yrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
.+.++..+..++...+.....| .++.+..+ .... ....+..+++++++=+|.|...|+
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~~~~-~~~~~~~~~~~v~~~~~~~l~~r~ 287 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----GLIS-IFMLIFFVASIVGSPLWGRLSKRF 287 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----hhhH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555665554444343 45555443 1222 223355677888888999888886
No 39
>PF11893 DUF3413: Domain of unknown function (DUF3413); InterPro: IPR024588 This entry represents an uncharacterised domain found in the N-terminal of predicted HI0842 type membrane sulphatases.
Probab=21.94 E-value=5.9e+02 Score=22.90 Aligned_cols=61 Identities=25% Similarity=0.567 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHH-HHHh--hhh-----hhhc--cC--CCccHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 027183 102 ERFTYLVAAVMSSFGITSMAV-MAVY--YRF-----WWQM--EG--GEVPLAEMFGTFALSVGAAVGMEF-WARWA 164 (227)
Q Consensus 102 er~ty~~aa~~ss~gi~s~a~-~a~y--yrf-----~w~m--~~--g~~p~~em~~t~~l~lga~vgMEf-~Aw~a 164 (227)
.|..-.++++.+++|.+-+.+ ..|| ||| .|+| .+ +|+. .++. ++.+.+...++-|. .++|.
T Consensus 83 ~r~~r~~a~i~atl~l~lL~~D~~Vy~~Y~fHlN~~v~~l~~~~~~~~~~-~~w~-~~~~~~~~il~~~~~~a~~~ 156 (253)
T PF11893_consen 83 RRLLRGLAAILATLGLILLLIDTQVYQQYRFHLNGFVWELLFSPGGSEIS-SSWL-LLFIVVPIILLLELLLANWL 156 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHCCccchHH-HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345556888888888877665 4566 454 4665 33 4455 3444 34444445777774 44433
No 40
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=21.82 E-value=3.9e+02 Score=23.08 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHH
Q 027183 114 SFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSV 151 (227)
Q Consensus 114 s~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~l 151 (227)
..-++.+++.+-|-|+.=+=---.-|+.|.+.-++-++
T Consensus 11 ~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~ 48 (178)
T cd03505 11 YYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSL 48 (178)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHH
Confidence 33445567778888876553222445666554443333
No 41
>PLN02220 delta-9 acyl-lipid desaturase
Probab=20.50 E-value=2.2e+02 Score=26.50 Aligned_cols=29 Identities=17% Similarity=-0.038 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027183 140 LAEMFGTFALSVGAAVGMEFWARWAHKALWHA 171 (227)
Q Consensus 140 ~~em~~t~~l~lga~vgMEf~Aw~aHKylmHG 171 (227)
+.+....+++.+ +++=++.--.||+.-|.
T Consensus 55 w~~~~~~~~~~~---it~lGiT~GyHRl~sHr 83 (299)
T PLN02220 55 WEALRFGLILYI---VTGLSITFSYHRNLAHR 83 (299)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 344444343333 33344555678888887
No 42
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=20.15 E-value=4.2e+02 Score=20.50 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=13.7
Q ss_pred hccCCCccHHHHHHHHHHH
Q 027183 132 QMEGGEVPLAEMFGTFALS 150 (227)
Q Consensus 132 ~m~~g~~p~~em~~t~~l~ 150 (227)
.+..|+....+++..+.++
T Consensus 250 ~~~~g~~s~g~~~~~~~~~ 268 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLS 268 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 3678999988888665554
Done!