Query 027183
Match_columns 227
No_of_seqs 129 out of 198
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 55.7 11 0.00037 31.7 4.0 75 91-167 50-131 (283)
2 3j1z_P YIIP, cation efflux fam 47.7 32 0.0011 29.4 5.7 74 91-166 59-139 (306)
3 3ixz_A Potassium-transporting 21.8 2E+02 0.007 28.7 7.3 61 104-167 962-1023(1034)
4 1q16_C Cytochrome B-NR, respir 21.0 47 0.0016 27.1 2.2 36 90-125 111-146 (225)
5 3rhw_A Avermectin-sensitive gl 20.1 1.2E+02 0.0043 25.9 4.7 48 114-161 247-296 (347)
6 2kdr_X NS4B, P27, non-structur 13.8 94 0.0032 19.4 1.8 15 107-121 6-20 (28)
7 3rt3_C NS1, NS1B, non-structur 13.6 64 0.0022 25.1 1.2 13 121-133 26-38 (109)
8 3ar4_A Sarcoplasmic/endoplasmi 11.9 3.4E+02 0.012 26.9 6.0 60 104-166 931-991 (995)
9 3tlw_A GLR4197 protein, GLIC; 11.0 4.8E+02 0.016 21.9 6.0 48 114-161 230-279 (321)
10 3rqw_A ELIC pentameric ligand 10.6 4.8E+02 0.016 21.9 5.8 48 114-161 233-282 (322)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=55.74 E-value=11 Score=31.67 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred HHHHHHHhhh-hhhhHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 91 r~~~~~~rk~-~er~ty------~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
-++-|+++|+ .+|.+| -+++...++.+..+++..+|-=+..-+++.+++... ..+.+.+.+.+..++..|+
T Consensus 50 l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~--~~l~v~~~s~~v~~~~~~~ 127 (283)
T 3h90_A 50 LLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPG--VGVIVTIVALICTIILVSF 127 (283)
T ss_dssp HHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCC--CCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcch--HHHHHHHHHHHHHHHHHHH
Confidence 4567777776 344433 356666667777666666553333224444433221 1244555667778888888
Q ss_pred HHHH
Q 027183 164 AHKA 167 (227)
Q Consensus 164 aHKy 167 (227)
.+|.
T Consensus 128 ~~~~ 131 (283)
T 3h90_A 128 QRWV 131 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=47.70 E-value=32 Score=29.45 Aligned_cols=74 Identities=20% Similarity=0.064 Sum_probs=42.3
Q ss_pred HHHHHHHhhhh-hhhHH------HHHHHHHhhhhhHHHHHHHhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 91 RVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (227)
Q Consensus 91 r~~~~~~rk~~-er~ty------~~aa~~ss~gi~s~a~~a~yyrf~w~m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~ 163 (227)
-++-|+++|+. ++.+| .++++..++.+..+++..+|.=...-+++.++.-.. ..+.+.+++++.++...++
T Consensus 59 l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~--~~~~v~~~~~~~~~~~~~~ 136 (306)
T 3j1z_P 59 FIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENAT--LGVVVSVVAIVLTLALVLL 136 (306)
T ss_dssp HHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTT--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCccccc--cchhhhhhHhhhhHHHHHH
Confidence 35667777663 33333 345666677777777777665444444444443322 2344555667777777776
Q ss_pred HHH
Q 027183 164 AHK 166 (227)
Q Consensus 164 aHK 166 (227)
.++
T Consensus 137 ~~~ 139 (306)
T 3j1z_P 137 QKR 139 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=21.77 E-value=2e+02 Score=28.75 Aligned_cols=61 Identities=11% Similarity=-0.079 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 104 ~ty~~aa~~ss~gi~s~a~~a~yyrf~w~-m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
--|++.|+..++.+..+ .+|.=+.-. +.-..+++.+++..+++.+..++..|..-|+..||
T Consensus 962 N~~l~~~~~~~~~l~~~---~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 1023 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCF---LCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCC 1023 (1034)
T ss_pred cHHHHHHHHHHHHHHHH---HHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778888777765543 344432211 22356888999999999999999999988766543
No 4
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=21.05 E-value=47 Score=27.05 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 027183 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAV 125 (227)
Q Consensus 90 ~r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~ 125 (227)
+|...+..|..|....|++-.+...+++|.+..-+.
T Consensus 111 RR~~~~~~R~~s~~~d~~il~ll~~i~~tGl~~~~~ 146 (225)
T 1q16_C 111 RRLFSPRVRATTTGADILILSLLVIQCALGLLTIPF 146 (225)
T ss_dssp HHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555567788877777777777665443
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=20.05 E-value=1.2e+02 Score=25.90 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHhhhh-hhhcc-CCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027183 114 SFGITSMAVMAVYYRF-WWQME-GGEVPLAEMFGTFALSVGAAVGMEFWA 161 (227)
Q Consensus 114 s~gi~s~a~~a~yyrf-~w~m~-~g~~p~~em~~t~~l~lga~vgMEf~A 161 (227)
++|||.+-.+.|+.-- ...|. -+.+|..+....+.+++..+..+|...
T Consensus 247 ~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~ 296 (347)
T 3rhw_A 247 TLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFAL 296 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677766666665433 34564 477999998887777777777777654
No 6
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=13.79 E-value=94 Score=19.40 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhhHHH
Q 027183 107 LVAAVMSSFGITSMA 121 (227)
Q Consensus 107 ~~aa~~ss~gi~s~a 121 (227)
.+.|++||+-|||+-
T Consensus 6 ~VtaiLssLTvTsLl 20 (28)
T 2kdr_X 6 RVTAILSSLTVTQLL 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367899999999874
No 7
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=13.57 E-value=64 Score=25.14 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.7
Q ss_pred HHHHHhhhhhhhc
Q 027183 121 AVMAVYYRFWWQM 133 (227)
Q Consensus 121 a~~a~yyrf~w~m 133 (227)
.++-+|-||+||-
T Consensus 26 gil~cy~r~swq~ 38 (109)
T 3rt3_C 26 GILECYERFSWQR 38 (109)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 3567899999995
No 8
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=11.90 E-value=3.4e+02 Score=26.90 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (227)
Q Consensus 104 ~ty~~aa~~ss~gi~s~a~~a~yyrf~w~-m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHK 166 (227)
..+++.++..++.+.. ..+|.-+.-. +.--.+|+.+++..+++.+..++..|.+-|+..+
T Consensus 931 n~~l~~~~~~~~~l~~---~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~~r~ 991 (995)
T 3ar4_A 931 NIWLLGSICLSMSLHF---LILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARN 991 (995)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHSTHHHHHTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666654433 4455433211 2335678889998888888888899988765444
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=11.04 E-value=4.8e+02 Score=21.88 Aligned_cols=48 Identities=2% Similarity=-0.123 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHhhh-hhhhcc-CCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027183 114 SFGITSMAVMAVYYR-FWWQME-GGEVPLAEMFGTFALSVGAAVGMEFWA 161 (227)
Q Consensus 114 s~gi~s~a~~a~yyr-f~w~m~-~g~~p~~em~~t~~l~lga~vgMEf~A 161 (227)
++|||.+-.+.++.- ....|. -+.+|..+....+.+++..+..+|.+.
T Consensus 230 ~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~ 279 (321)
T 3tlw_A 230 TLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666555555433 345564 377999999888888877777778765
No 10
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=10.58 E-value=4.8e+02 Score=21.87 Aligned_cols=48 Identities=8% Similarity=-0.139 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHhh-hhhhhccC-CCccHHHHHHHHHHHHHHHHHHHHHH
Q 027183 114 SFGITSMAVMAVYY-RFWWQMEG-GEVPLAEMFGTFALSVGAAVGMEFWA 161 (227)
Q Consensus 114 s~gi~s~a~~a~yy-rf~w~m~~-g~~p~~em~~t~~l~lga~vgMEf~A 161 (227)
++|||.+-.+.++. -....|.. +.+|..+....+.+++..+..+|.+.
T Consensus 233 ~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~ 282 (322)
T 3rqw_A 233 QTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIF 282 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665555543 34566753 78999999988888888888888776
Done!