Query 027183
Match_columns 227
No_of_seqs 129 out of 198
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 09:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bnma1 a.35.1.3 (A:6-76) Hydr 53.5 5.5 0.0004 27.5 3.3 59 90-156 4-63 (71)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 35.6 25 0.0018 29.5 5.4 61 104-167 408-469 (472)
3 d1pv7a_ f.38.1.2 (A:) Lactose 26.0 1E+02 0.0074 21.8 6.7 19 149-167 268-286 (417)
4 d1vlaa_ d.227.1.2 (A:) Hypothe 18.0 37 0.0027 23.5 2.7 20 105-124 46-65 (144)
5 d1uspa_ d.227.1.1 (A:) Organic 16.6 42 0.003 22.9 2.7 19 105-123 46-64 (137)
6 d2onfa1 d.227.1.1 (A:1-139) Hy 15.1 48 0.0035 22.8 2.7 20 105-124 44-63 (139)
7 d1y5ic1 f.21.3.1 (C:1-225) Res 15.0 1.4E+02 0.0099 22.5 5.6 32 90-121 111-142 (225)
8 d1xeqa1 a.16.1.1 (A:15-103) N- 15.0 26 0.0019 24.8 1.2 13 121-133 12-24 (89)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 14.3 2.2E+02 0.016 20.8 8.4 31 136-166 280-311 (447)
10 d2pn2a1 d.227.1.1 (A:1-132) Un 11.0 76 0.0055 21.5 2.7 19 105-123 44-62 (132)
No 1
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=53.53 E-value=5.5 Score=27.48 Aligned_cols=59 Identities=37% Similarity=0.582 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHHHHHHhhhhhhhc-cCCCccHHHHHHHHHHHHHHHHH
Q 027183 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQM-EGGEVPLAEMFGTFALSVGAAVG 156 (227)
Q Consensus 90 ~r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a~~a~yyrf~w~m-~~g~~p~~em~~t~~l~lga~vg 156 (227)
.-.||++..+| |+...--||.+|-+|-|--.+.| |.- ||||..+++ ++-++=++|+-+|
T Consensus 4 tgfae~lk~rr-eqvkmdhaalas~lgetpetvaa------wengeggeltltq-lg~ia~~lgtsig 63 (71)
T d2bnma1 4 TGFAELLKDRR-EQVKMDHAALASLLGETPETVAA------WENGEGGELTLTQ-LGRIAHVLGTSIG 63 (71)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHH------HHTTTCTTCBHHH-HHHHHHHTTSCTG
T ss_pred hhHHHHHHHHH-HHHhhhHHHHHHHHcCCchHHHH------hhcCCCceeeHHH-HHHHHHHHccccc
Confidence 34667765544 66666779999999999877765 775 799999887 4556555555443
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=35.64 E-value=25 Score=29.51 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHhhhhhhh-ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027183 104 FTYLVAAVMSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 104 ~ty~~aa~~ss~gi~s~a~~a~yyrf~w~-m~~g~~p~~em~~t~~l~lga~vgMEf~Aw~aHKy 167 (227)
-.|++.++..++. +.+..+|.-+.=. +.--.+|+.+.+..+.+.+..++.+|.+-|+..||
T Consensus 408 N~~l~~av~i~~~---l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~ 469 (472)
T d1wpga4 408 NIWLLGSICLSMS---LHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 469 (472)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3466666554444 4555677664322 23357999999999999999999999998776554
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=25.98 E-value=1e+02 Score=21.79 Aligned_cols=19 Identities=16% Similarity=-0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027183 149 LSVGAAVGMEFWARWAHKA 167 (227)
Q Consensus 149 l~lga~vgMEf~Aw~aHKy 167 (227)
..++..++.=...|+..|.
T Consensus 268 ~~~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 268 GELLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHHHHTTHHHHHHHH
T ss_pred cccccccchhhhhhhhccc
Confidence 3344555555566665553
No 4
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=18.01 E-value=37 Score=23.49 Aligned_cols=20 Identities=10% Similarity=0.419 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVMA 124 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~a 124 (227)
-|+.+|++||++++..+++.
T Consensus 46 elllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 46 ELVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999988777764
No 5
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.62 E-value=42 Score=22.89 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVM 123 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~ 123 (227)
-|+.||++||++++...++
T Consensus 46 elllaAlasC~~~t~~~~a 64 (137)
T d1uspa_ 46 QLFAAGYAACFQGALGVVS 64 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999988766554
No 6
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.08 E-value=48 Score=22.76 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVMA 124 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~a 124 (227)
-|+.||++||++++...++.
T Consensus 44 elllaala~C~~~~~~~~a~ 63 (139)
T d2onfa1 44 TLFPSVLASCLLTTFLEFKD 63 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988776654
No 7
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=14.98 E-value=1.4e+02 Score=22.51 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhHHH
Q 027183 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMA 121 (227)
Q Consensus 90 ~r~~~~~~rk~~er~ty~~aa~~ss~gi~s~a 121 (227)
+|...|..|..+.+..|.+-.+.-.+++|.++
T Consensus 111 RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~ 142 (225)
T d1y5ic1 111 RRLFSPRVRATTTGADILILSLLVIQCALGLL 142 (225)
T ss_dssp HHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555544444444
No 8
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=14.97 E-value=26 Score=24.78 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.8
Q ss_pred HHHHHhhhhhhhc
Q 027183 121 AVMAVYYRFWWQM 133 (227)
Q Consensus 121 a~~a~yyrf~w~m 133 (227)
.++-+|-||+||-
T Consensus 12 gil~cy~r~swq~ 24 (89)
T d1xeqa1 12 GILECYERFSWQR 24 (89)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhcc
Confidence 4567899999995
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.35 E-value=2.2e+02 Score=20.80 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=14.4
Q ss_pred CCccHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027183 136 GEVPLAEMFGT-FALSVGAAVGMEFWARWAHK 166 (227)
Q Consensus 136 g~~p~~em~~t-~~l~lga~vgMEf~Aw~aHK 166 (227)
...+..+.... .+..++..++.=...|+.-|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 34444444333 33334455555555555544
No 10
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=11.00 E-value=76 Score=21.46 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhhHHHHH
Q 027183 105 TYLVAAVMSSFGITSMAVM 123 (227)
Q Consensus 105 ty~~aa~~ss~gi~s~a~~ 123 (227)
-|+.+|+++|++++.-.++
T Consensus 44 eLllaala~C~~~~~~~~a 62 (132)
T d2pn2a1 44 DLLATSLASCMLTIIGIKA 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999998755443
Done!