Query 027184
Match_columns 227
No_of_seqs 149 out of 1194
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 4.2E-47 9E-52 313.9 25.6 215 1-218 107-333 (365)
2 COG0631 PTC1 Serine/threonine 100.0 5.7E-45 1.2E-49 290.8 18.0 206 1-218 42-255 (262)
3 PTZ00224 protein phosphatase 2 100.0 5.3E-41 1.1E-45 278.5 25.0 208 1-218 52-274 (381)
4 KOG0698 Serine/threonine prote 100.0 3.7E-40 7.9E-45 271.3 25.3 218 1-219 79-308 (330)
5 PF00481 PP2C: Protein phospha 100.0 3E-42 6.6E-47 275.5 12.4 205 1-207 37-254 (254)
6 KOG0697 Protein phosphatase 1B 100.0 5.1E-40 1.1E-44 252.1 19.8 216 1-219 57-295 (379)
7 cd00143 PP2Cc Serine/threonine 100.0 3.3E-39 7E-44 257.6 23.9 211 1-214 34-254 (254)
8 PRK14559 putative protein seri 100.0 1.4E-39 3E-44 284.0 21.1 210 1-221 418-641 (645)
9 smart00332 PP2Cc Serine/threon 100.0 1.2E-38 2.6E-43 254.7 23.3 209 1-212 38-255 (255)
10 KOG0700 Protein phosphatase 2C 100.0 3.3E-32 7.2E-37 220.2 16.0 202 1-202 103-378 (390)
11 KOG0699 Serine/threonine prote 100.0 2E-28 4.4E-33 194.7 14.9 163 54-218 325-506 (542)
12 KOG1379 Serine/threonine prote 99.9 1E-25 2.2E-30 177.1 19.3 186 1-214 107-330 (330)
13 KOG1323 Serine/threonine phosp 99.9 3.3E-24 7.1E-29 169.2 17.2 214 2-217 149-489 (493)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-19 2.8E-24 159.9 13.8 212 2-219 556-776 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.8 1.3E-18 2.9E-23 133.4 16.6 154 1-199 34-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.8 1.8E-19 3.8E-24 140.3 11.9 153 1-183 28-193 (212)
17 TIGR02865 spore_II_E stage II 99.7 1.2E-16 2.6E-21 144.5 18.2 168 1-214 584-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 2.6E-14 5.7E-19 109.4 18.2 170 1-215 8-193 (193)
19 COG2208 RsbU Serine phosphatas 98.7 1.5E-06 3.2E-11 73.3 17.9 168 1-215 179-366 (367)
20 KOG0699 Serine/threonine prote 96.1 0.0067 1.5E-07 49.9 3.7 50 1-50 54-104 (542)
21 PF09436 DUF2016: Domain of un 72.8 2.4 5.2E-05 26.7 1.4 23 154-176 23-45 (72)
22 PRK10693 response regulator of 59.8 82 0.0018 25.8 8.5 50 38-91 208-259 (303)
23 COG3700 AphA Acid phosphatase 58.8 20 0.00044 27.1 4.2 45 158-202 71-130 (237)
24 COG2168 DsrH Uncharacterized c 50.8 8.2 0.00018 25.8 1.0 49 157-208 24-72 (96)
25 PF01436 NHL: NHL repeat; Int 49.6 33 0.00071 16.9 3.4 20 67-86 9-28 (28)
26 PF06972 DUF1296: Protein of u 43.8 27 0.00059 21.1 2.3 25 172-196 19-44 (60)
27 COG5518 Bacteriophage capsid p 39.5 11 0.00024 31.7 0.2 134 68-215 190-330 (492)
28 cd08787 CARD_NOD2_1_CARD15 Cas 35.7 6.9 0.00015 25.2 -1.1 52 172-224 34-85 (87)
29 cd08325 CARD_CASP1-like Caspas 34.1 94 0.002 20.1 4.0 32 171-202 30-61 (83)
30 PF02845 CUE: CUE domain; Int 30.8 96 0.0021 16.8 3.4 30 168-197 11-41 (42)
31 cd08788 CARD_NOD2_2_CARD15 Cas 29.7 86 0.0019 20.2 3.1 31 172-202 29-59 (81)
32 TIGR03735 PRTRC_A PRTRC system 28.9 35 0.00075 26.1 1.4 48 154-201 22-90 (192)
33 COG3787 Uncharacterized protei 27.9 1.1E+02 0.0024 21.7 3.7 36 62-101 14-51 (145)
34 PF05785 CNF1: Rho-activating 27.3 88 0.0019 25.4 3.5 24 57-81 130-153 (281)
35 PF12953 DUF3842: Domain of un 26.6 53 0.0011 23.4 1.9 15 1-15 3-17 (131)
36 cd06409 PB1_MUG70 The MUG70 pr 22.9 92 0.002 20.4 2.4 21 147-167 42-62 (86)
37 PF07335 Glyco_hydro_75: Funga 21.7 1.3E+02 0.0028 22.2 3.2 17 65-81 69-85 (156)
38 cd08324 CARD_NOD1_CARD4 Caspas 21.5 1E+02 0.0022 20.1 2.4 30 172-202 30-59 (85)
39 PF10847 DUF2656: Protein of u 21.2 3.2E+02 0.0068 19.5 4.9 43 185-227 53-97 (132)
40 PRK02391 heat shock protein Ht 21.1 91 0.002 25.6 2.6 25 159-183 115-139 (296)
41 PF07533 BRK: BRK domain; Int 20.5 1.8E+02 0.004 16.5 3.1 34 78-111 3-36 (46)
42 smart00331 PP2C_SIG Sigma fact 20.5 3.6E+02 0.0078 19.9 8.0 70 148-217 19-97 (193)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=4.2e-47 Score=313.94 Aligned_cols=215 Identities=39% Similarity=0.638 Sum_probs=187.5
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhc-CCCCCCCCceEEEEEEECCEEEEEEcc
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSE-NNQNRDAGSTASTAILVGDRLLVANVG 79 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~gtT~~~~~i~~~~~~~~~vG 79 (227)
+|||||||+.+|++|++.+.+.+.+.......+.+.|.++|..++..+.+.. ......+|||++++++.++++|++|||
T Consensus 107 ~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvG 186 (365)
T PLN03145 107 GVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAG 186 (365)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecC
Confidence 5999999999999999999999987655555677889999999999987652 233445999999999999999999999
Q ss_pred cCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCcccccc-------CccCCCceEEE
Q 027184 80 DSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ-------YVVADPEIQEE 152 (227)
Q Consensus 80 DSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~-------~~~~~~~i~~~ 152 (227)
|||+|++|++++++||+||++.++.|..||.+.||.+.. .++++.+.+||+||+..+|. .+.++|++..+
T Consensus 187 DSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~---g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~ 263 (365)
T PLN03145 187 DCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYD---GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTT 263 (365)
T ss_pred CceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceec---ceECCccccccccccccccccccccCCCcceEEEEEEE
Confidence 999999999999999999999999999999999998753 35677788999999977653 35788999999
Q ss_pred EeCCCCeEEEEEcCCCcccCChHHHHHhh----ccCCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCC
Q 027184 153 VIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 218 (227)
Q Consensus 153 ~~~~~~d~lll~SDGv~d~l~~~~i~~~~----~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~ 218 (227)
.+.+++++||||||||||+++++++.+++ ....+++++|+.|++.|+.+++.||+|+|||+|+...
T Consensus 264 ~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~ 333 (365)
T PLN03145 264 QLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQP 333 (365)
T ss_pred ECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCC
Confidence 99987778889999999999999975544 4456899999999999999999999999999999854
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-45 Score=290.76 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=181.3
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCC-----ccc-HHHHHHHHHHHHHHHHHhhc--CCCCCCCCceEEEEEEECCE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKF-----ISD-TKSAIADAYSHTDSEFLKSE--NNQNRDAGSTASTAILVGDR 72 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~-----~~~-~~~~l~~~~~~~~~~~~~~~--~~~~~~~gtT~~~~~i~~~~ 72 (227)
+||||||||.+|++|++.+++.|.+.... ... ..+.+.+.+..++..+.... ......||||++++++.+++
T Consensus 42 ~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~ 121 (262)
T COG0631 42 AVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNK 121 (262)
T ss_pred EEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCe
Confidence 59999999999999999999999775221 111 57899999999999998873 35668899999999999999
Q ss_pred EEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEE
Q 027184 73 LLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEE 152 (227)
Q Consensus 73 ~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~ 152 (227)
+|++||||||+|++|++++.++|+||++.+..+..++...++.. .++..+.+||++|+.. ...|++...
T Consensus 122 l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~------~~~~~~~ltralG~~~-----~~~p~~~~~ 190 (262)
T COG0631 122 LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR------SHPRRNALTRALGDFD-----LLEPDITEL 190 (262)
T ss_pred EEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH------hCccchhhhhhcCCCc-----ccceeEEEE
Confidence 99999999999999999999999999999998888765555443 3455668999999875 378999999
Q ss_pred EeCCCCeEEEEEcCCCcccCChHHHHHhhccCCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCC
Q 027184 153 VIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 218 (227)
Q Consensus 153 ~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~ 218 (227)
.+.++ |+||||||||||.+++++|.+++....+++++++.|++.|+.+++.||+|++++.+....
T Consensus 191 ~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 191 ELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred EcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 99986 999999999999999999999999878999999999999999999999999999998775
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.3e-41 Score=278.52 Aligned_cols=208 Identities=39% Similarity=0.632 Sum_probs=176.6
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE-CCEEEEEEcc
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV-GDRLLVANVG 79 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~-~~~~~~~~vG 79 (227)
+|||||||..+|+++++.+.+.+...... .....|++++..+++++.+.. ..+|||++++++. +.+++++|||
T Consensus 52 gVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVG 125 (381)
T PTZ00224 52 GVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVG 125 (381)
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcc
Confidence 59999999999999999999877554221 123458899999999987542 2358999888876 5799999999
Q ss_pred cCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCcccccc---------CccCCCceE
Q 027184 80 DSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ---------YVVADPEIQ 150 (227)
Q Consensus 80 DSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~---------~~~~~~~i~ 150 (227)
|||+|++|+|++++||+||++.++.|..||.+.+|.+.. .+..+.+.+||+||+..+|. .+.+.|++.
T Consensus 126 DSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~---~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~ 202 (381)
T PTZ00224 126 DSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS---NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVT 202 (381)
T ss_pred cceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc---ccccCceeeecccCCcccccccccccccCcceeeeEEE
Confidence 999999999999999999999999999999999988743 36677889999999976542 245789999
Q ss_pred EEEeCCCCeEEEEEcCCCcc-cCChHHHHHhhcc----CCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCC
Q 027184 151 EEVIDSSLEFLILASDGLWD-VVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 218 (227)
Q Consensus 151 ~~~~~~~~d~lll~SDGv~d-~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~ 218 (227)
.+.+.+ +|+|||||||||| .++++++.+++.+ ..+++++|+.|++.|+.+|+.||+|+||+++....
T Consensus 203 ~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 203 HLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred EEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 988876 5899999999999 7999999988863 36899999999999999999999999999999875
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-40 Score=271.26 Aligned_cols=218 Identities=56% Similarity=0.807 Sum_probs=195.2
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCccc---HHHHHHHHHH-HHHHHHHhhcCCCCCCCCceEEEEEEECC-EEEE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISD---TKSAIADAYS-HTDSEFLKSENNQNRDAGSTASTAILVGD-RLLV 75 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~---~~~~l~~~~~-~~~~~~~~~~~~~~~~~gtT~~~~~i~~~-~~~~ 75 (227)
+|||||||+.+|+++.+.+...+.+....... ....++++|. +.+.++... ......+|||++++++.++ ++|+
T Consensus 79 gVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~v 157 (330)
T KOG0698|consen 79 GVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYV 157 (330)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEE
Confidence 59999999999999999999999887666553 7889999999 588888765 2224567888888888755 9999
Q ss_pred EEcccCcEEEEeCC-eeeeCCCCCCCCChhHHHHHHHcCCeEEeCC-cceeCCeeccccccCccccc-cCccCCCceEEE
Q 027184 76 ANVGDSRAVICRGG-NAIAVSRDHKPDQTDERQRIEDAGGFVMWAG-TWRVGGVLAVSRAFGDRLLK-QYVVADPEIQEE 152 (227)
Q Consensus 76 ~~vGDSr~y~~r~~-~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~t~~lg~~~~~-~~~~~~~~i~~~ 152 (227)
+|+||||+++.+.+ +.++||.||.+..+.|..||.+.||.+.... ..|.++.+.++|+|||..++ +.+.++|+++..
T Consensus 158 aN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~ 237 (330)
T KOG0698|consen 158 ANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQV 237 (330)
T ss_pred EEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEE
Confidence 99999999999766 8999999999999999999999999998654 47999999999999999999 889999999999
Q ss_pred EeCCCCeEEEEEcCCCcccCChHHHHHhhcc----CCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCCC
Q 027184 153 VIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 219 (227)
Q Consensus 153 ~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~~ 219 (227)
.+...++||||+||||||.++.++..++++. ...+..++..+.+.+..+++.||+|+|||.|.....
T Consensus 238 ~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 238 KINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred EcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 9988789999999999999999999999987 568999999999999999999999999999999864
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3e-42 Score=275.46 Aligned_cols=205 Identities=50% Similarity=0.773 Sum_probs=171.8
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcc--cHHHHHHHHHHH-HHHHHHhhcCC-CCCCCCceEEEEEEECCEEEEE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFIS--DTKSAIADAYSH-TDSEFLKSENN-QNRDAGSTASTAILVGDRLLVA 76 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~gtT~~~~~i~~~~~~~~ 76 (227)
+|+|||||+.+++++++.+.+.+.+...... .+.+.|..+|.. ++..+...... ....+|||++++++.++++|++
T Consensus 37 ~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~va 116 (254)
T PF00481_consen 37 GVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVA 116 (254)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEE
T ss_pred EEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccccccccccccccccccccceeEEE
Confidence 4899999999999999999987766432222 578889999988 77777653211 5667999999999999999999
Q ss_pred EcccCcEEEEeCCeee-eCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCcccccc----CccCCCceEE
Q 027184 77 NVGDSRAVICRGGNAI-AVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQ----YVVADPEIQE 151 (227)
Q Consensus 77 ~vGDSr~y~~r~~~~~-~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~----~~~~~~~i~~ 151 (227)
||||||+|+++++... +||+||++..+.|..||...||.+.. ..++.+.+.+||+|||..+++ .+.++|++..
T Consensus 117 nvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~--~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~ 194 (254)
T PF00481_consen 117 NVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE--NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISE 194 (254)
T ss_dssp EESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE--TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEE
T ss_pred eeeeeeeeeeeccccccccccccccchhhccceeecccccccc--chhhhhccccccccccccccccccceeeeeccccc
Confidence 9999999999999988 99999999999999999999999887 678889999999999999998 7999999999
Q ss_pred EEeCCCCeEEEEEcCCCcccCChHHHHHhhccCCC----HHHHHHHHHHHHHHcCCCCcc
Q 027184 152 EVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQD----PEEAAKRLMQEAYQRGSADNI 207 (227)
Q Consensus 152 ~~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~~~~----~~~~a~~l~~~a~~~g~~DN~ 207 (227)
+.+.+.+.+||||||||||+++++++.+++.+..+ |+.+|+.|++.|+++|+.|||
T Consensus 195 ~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 195 VDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp EEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 99998766999999999999999999999987544 899999999999999999996
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-40 Score=252.12 Aligned_cols=216 Identities=36% Similarity=0.581 Sum_probs=193.3
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCc--------ccHHHHHHHHHHHHHHHHHhh--cCCCCCCCCceEEEEEEEC
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFI--------SDTKSAIADAYSHTDSEFLKS--ENNQNRDAGSTASTAILVG 70 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~gtT~~~~~i~~ 70 (227)
||+|||.|+..++++++.+++.+.+...+. ++.++.|+..|.++++.++.. ......++|||++++++..
T Consensus 57 AVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp 136 (379)
T KOG0697|consen 57 AVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSP 136 (379)
T ss_pred EEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecC
Confidence 699999999999999999999987654332 367778999998888877655 3334455999999999999
Q ss_pred CEEEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccc---------c
Q 027184 71 DRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------Q 141 (227)
Q Consensus 71 ~~~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~---------~ 141 (227)
..+|++|+||||+.+.|+|+..+-|+||.+..+.|+.||+.+||.+..+ |.+|.+.++|+|||+.+| +
T Consensus 137 ~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIq---RvNGsLAVSRAlGDydyK~v~~kgp~eQ 213 (379)
T KOG0697|consen 137 THIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQ---RVNGSLAVSRALGDYDYKNVPGKGPTEQ 213 (379)
T ss_pred ceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEE---EecceeeeehhccCcccccCCCCCchhc
Confidence 9999999999999999999999999999999999999999999988754 789999999999999998 5
Q ss_pred CccCCCceEEEEeCCCCeEEEEEcCCCcccCChHHHHHhhccC----CCHHHHHHHHHHHHHHcCCCCccEEEEEEecCC
Q 027184 142 YVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI----QDPEEAAKRLMQEAYQRGSADNITCVVVRFLAN 217 (227)
Q Consensus 142 ~~~~~~~i~~~~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~~----~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~ 217 (227)
.++++|++........++|+||++||+||.++.+|+.++++.. .+..++++.+++.++.+|+.||+|+|++-|...
T Consensus 214 lVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~A 293 (379)
T KOG0697|consen 214 LVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGA 293 (379)
T ss_pred ccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCC
Confidence 5889999999998888899999999999999999999988653 689999999999999999999999999999887
Q ss_pred CC
Q 027184 218 QG 219 (227)
Q Consensus 218 ~~ 219 (227)
..
T Consensus 294 Pk 295 (379)
T KOG0697|consen 294 PK 295 (379)
T ss_pred CC
Confidence 64
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.3e-39 Score=257.61 Aligned_cols=211 Identities=46% Similarity=0.723 Sum_probs=185.9
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCC-----cccHHHHHHHHHHHHHHHHHhhcC--CCCCCCCceEEEEEEECCEE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKF-----ISDTKSAIADAYSHTDSEFLKSEN--NQNRDAGSTASTAILVGDRL 73 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~gtT~~~~~i~~~~~ 73 (227)
+|||||||+..++++++.+++.+.+.... ...+...|+++|+.+++.+..... .....+|||++++++..+++
T Consensus 34 ~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l 113 (254)
T cd00143 34 GVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKL 113 (254)
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEE
Confidence 58999999999999999999998775432 345677899999999999987632 35567999999999999999
Q ss_pred EEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEE
Q 027184 74 LVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEV 153 (227)
Q Consensus 74 ~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~ 153 (227)
+++|+||||+|++|+++++++|.||++.++.+..++.+.++.+. ....++...+|+++|+..+++.....|++..+.
T Consensus 114 ~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~ 190 (254)
T cd00143 114 YVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVK 190 (254)
T ss_pred EEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE---eCEEcCceeeccccCCccccCCEEcCCeEEEEE
Confidence 99999999999999999999999999999889999999888643 245667788999999987777778899999999
Q ss_pred eCCCCeEEEEEcCCCcccCChHHHHHhhccCC---CHHHHHHHHHHHHHHcCCCCccEEEEEEe
Q 027184 154 IDSSLEFLILASDGLWDVVTNEEAVAMIKPIQ---DPEEAAKRLMQEAYQRGSADNITCVVVRF 214 (227)
Q Consensus 154 ~~~~~d~lll~SDGv~d~l~~~~i~~~~~~~~---~~~~~a~~l~~~a~~~g~~DN~T~ivv~~ 214 (227)
+.+.+|+|+|||||||+++++++|.+++.... ++++++++|++.|.++++.||+|+|++++
T Consensus 191 l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 191 LTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred eCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 84456999999999999999999999998876 79999999999999999999999999875
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.4e-39 Score=283.95 Aligned_cols=210 Identities=23% Similarity=0.288 Sum_probs=164.0
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCC----CCcccHHHHHHHHHHHHHHHHHhhc----CCCCCCCCceEEEEEEECCE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHP----KFISDTKSAIADAYSHTDSEFLKSE----NNQNRDAGSTASTAILVGDR 72 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~gtT~~~~~i~~~~ 72 (227)
+|||||||+.+|++||+.+++.+.+.. .......+.++++|..+|..+.+.. ......||||++++++.+++
T Consensus 418 aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~ 497 (645)
T PRK14559 418 ILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQ 497 (645)
T ss_pred EEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCE
Confidence 589999999999988888888775421 1111245679999999999997652 12455799999999999999
Q ss_pred EEEEEcccCcEEEE-eCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEE
Q 027184 73 LLVANVGDSRAVIC-RGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQE 151 (227)
Q Consensus 73 ~~~~~vGDSr~y~~-r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~ 151 (227)
+|++||||||+|++ |+|++++||+||++.+.+.. .| +........++.+.+||+||+...+ ..+|++..
T Consensus 498 l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~-----~G--i~~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~ 567 (645)
T PRK14559 498 VAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQ-----RG--VEPQIAYARPDAYQLTQALGPRDNS---AIQPDIQF 567 (645)
T ss_pred EEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHH-----hC--CCHHHHhcCcccceeeeccCCCCCC---cccceEEE
Confidence 99999999999998 56899999999998754332 22 2222233345677899999975422 35789999
Q ss_pred EEeCCCCeEEEEEcCCCccc--CCh---HHHHHhhccCCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCCCCC
Q 027184 152 EVIDSSLEFLILASDGLWDV--VTN---EEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGS 221 (227)
Q Consensus 152 ~~~~~~~d~lll~SDGv~d~--l~~---~~i~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~~~~ 221 (227)
+.+.+ +|+||||||||||+ +.. +++..++....++++++++|++.|+.+|++||+|+|++++......+
T Consensus 568 ~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 568 LEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQLS 641 (645)
T ss_pred EEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCCC
Confidence 88876 58999999999994 443 34566777767899999999999999999999999999998766543
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.2e-38 Score=254.71 Aligned_cols=209 Identities=50% Similarity=0.789 Sum_probs=183.8
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCc----ccHHHHHHHHHHHHHHHHHhhcCC--CCCCCCceEEEEEEECCEEE
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFI----SDTKSAIADAYSHTDSEFLKSENN--QNRDAGSTASTAILVGDRLL 74 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~gtT~~~~~i~~~~~~ 74 (227)
+|||||||+.+++++++.+.+.+.+..... ..+.+.|++++..+++.+...... ....+|||++++++..++++
T Consensus 38 ~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~ 117 (255)
T smart00332 38 GVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLY 117 (255)
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEE
Confidence 589999999999999999999988764333 247788999999999999776322 34669999999999999999
Q ss_pred EEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEEe
Q 027184 75 VANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVI 154 (227)
Q Consensus 75 ~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~~ 154 (227)
++|+||||+|++|++++.++|.||++.+..+..++.+.++.+.. .++++...+|+++|...+++.+...|++....+
T Consensus 118 ~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~---~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~ 194 (255)
T smart00332 118 VANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN---GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVEL 194 (255)
T ss_pred EEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC---CeECCeEecccccCCHhhcCCeEeeeEEEEEEe
Confidence 99999999999999999999999999999999999999886643 266777899999999888888889999999987
Q ss_pred CCCCeEEEEEcCCCcccCChHHHHHhhccCC---CHHHHHHHHHHHHHHcCCCCccEEEEE
Q 027184 155 DSSLEFLILASDGLWDVVTNEEAVAMIKPIQ---DPEEAAKRLMQEAYQRGSADNITCVVV 212 (227)
Q Consensus 155 ~~~~d~lll~SDGv~d~l~~~~i~~~~~~~~---~~~~~a~~l~~~a~~~g~~DN~T~ivv 212 (227)
...+|+|||||||||++++++++.+++.+.. ++.++++.|++.|..++..||+|+|++
T Consensus 195 ~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 195 TEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred cCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 4446999999999999999999999998765 599999999999999999999999985
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-32 Score=220.19 Aligned_cols=202 Identities=38% Similarity=0.644 Sum_probs=168.9
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHH------------hCCCC----------------------cccHHHHHHHHHHHHHH
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLI------------RHPKF----------------------ISDTKSAIADAYSHTDS 46 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~------------~~~~~----------------------~~~~~~~l~~~~~~~~~ 46 (227)
.|+|||||..+++++++.+..++. ..... .....+.|.+||++.++
T Consensus 103 GIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~tee 182 (390)
T KOG0700|consen 103 GIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEATEE 182 (390)
T ss_pred EEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHHHH
Confidence 389999999999999999988876 11111 34567899999999999
Q ss_pred HHHhh------cCCCCCCCCceEEEEEEECCEEEEEEcccCcEEEEe---CC---eeeeCCCCCCCCChhHHHHHHHcCC
Q 027184 47 EFLKS------ENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICR---GG---NAIAVSRDHKPDQTDERQRIEDAGG 114 (227)
Q Consensus 47 ~~~~~------~~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r---~~---~~~~lt~dh~~~~~~~~~~i~~~gg 114 (227)
.+... ..+....+|+||++.++.+..+|++|+||||+.+-+ ++ ..+|||.||+..++.|.+||.....
T Consensus 183 ~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHP 262 (390)
T KOG0700|consen 183 DFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHP 262 (390)
T ss_pred HHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCC
Confidence 98755 556678899999999999999999999999999853 33 4699999999999999999976542
Q ss_pred ---eEEeCCcceeCCeeccccccCccccc---------------------cCccCCCceEEEEeCCCCeEEEEEcCCCcc
Q 027184 115 ---FVMWAGTWRVGGVLAVSRAFGDRLLK---------------------QYVVADPEIQEEVIDSSLEFLILASDGLWD 170 (227)
Q Consensus 115 ---~~~~~~~~~~~~~~~~t~~lg~~~~~---------------------~~~~~~~~i~~~~~~~~~d~lll~SDGv~d 170 (227)
.+.....+|+.|.++++|+|||..+| |+++++|.++...+.+.+.|+||+|||+|+
T Consensus 263 dd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE 342 (390)
T KOG0700|consen 263 DDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWE 342 (390)
T ss_pred CCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhh
Confidence 22222337999999999999998887 678999999999999998999999999999
Q ss_pred cCChHHHHHhhccC----CCHHHHHHHHHHHHHHcC
Q 027184 171 VVTNEEAVAMIKPI----QDPEEAAKRLMQEAYQRG 202 (227)
Q Consensus 171 ~l~~~~i~~~~~~~----~~~~~~a~~l~~~a~~~g 202 (227)
+++.+|+.+++.+. ..-+.+|+.|++.|+.+.
T Consensus 343 ~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 343 YLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred hcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999988764 345568999999987654
No 11
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2e-28 Score=194.68 Aligned_cols=163 Identities=37% Similarity=0.640 Sum_probs=147.4
Q ss_pred CCCCCCCceEEEEEEECCEEEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccc
Q 027184 54 NQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRA 133 (227)
Q Consensus 54 ~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~ 133 (227)
.....+|||+++|++.+++++++|.||||+++.|+|+.+-++.||.+..+.|..||..+||.++..+ |+++.++++|+
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA 402 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRA 402 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhh
Confidence 3456789999999999999999999999999999999999999999999999999999999998774 88999999999
Q ss_pred cCccccc---------cCccCCCceEEEEeCCCCeEEEEEcCCCcccCChHHHHHhhc----cCCCHHHHHHHHHHHHHH
Q 027184 134 FGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQ 200 (227)
Q Consensus 134 lg~~~~~---------~~~~~~~~i~~~~~~~~~d~lll~SDGv~d~l~~~~i~~~~~----~~~~~~~~a~~l~~~a~~ 200 (227)
||+..|| +.+++-|+|....+.+.+.|+||++||+|++++-+++.++++ .+....++++.|++.++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 9999998 447899999999999999999999999999999999877664 456788999999999987
Q ss_pred cC------CCCccEEEEEEecCCC
Q 027184 201 RG------SADNITCVVVRFLANQ 218 (227)
Q Consensus 201 ~g------~~DN~T~ivv~~~~~~ 218 (227)
.. +.||+|+|++.|.+..
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fkrk~ 506 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFKRKS 506 (542)
T ss_pred CCCCCCCcCCCcceEEEEEeccch
Confidence 53 5799999999998654
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1e-25 Score=177.05 Aligned_cols=186 Identities=23% Similarity=0.258 Sum_probs=129.6
Q ss_pred CeeeCCChHHH-----HHHHH---HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE--C
Q 027184 1 MVFSGHGGARA-----AEYVK---HNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV--G 70 (227)
Q Consensus 1 ~V~DG~GG~~~-----~~~a~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~ 70 (227)
.||||+|||.. +.+.. +.+.+.+........+|...|.+++.+. ..+ +...-++||+++++++ +
T Consensus 107 GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~~--~~~~vGSSTAcI~~l~~~~ 180 (330)
T KOG1379|consen 107 GVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KSQ--KVPIVGSSTACILALDREN 180 (330)
T ss_pred EEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHH----hhc--CCCCCCcceeeeeeeecCC
Confidence 48999999843 44432 2333333333444557887777776543 322 2234477888888888 7
Q ss_pred CEEEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceE
Q 027184 71 DRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQ 150 (227)
Q Consensus 71 ~~~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~ 150 (227)
++++++|+|||.+.++|+|++++.|..+........|. ..++.. ...+++|. ....+..
T Consensus 181 ~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQL--------------s~~p~~-~~~~~~d~------p~~ad~~ 239 (330)
T KOG1379|consen 181 GKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQL--------------SSPPEG-YSSYISDV------PDSADVT 239 (330)
T ss_pred CeEEEeeccCcceEEEECCEEEEcCchheeccCCceee--------------ccCCcc-ccccccCC------ccccceE
Confidence 89999999999999999999999998876554332221 001100 02223432 2456677
Q ss_pred EEEeCCCCeEEEEEcCCCcccCChHHHHHhhcc-----CCCHHHHHHHHHHHHHHc-----------------------C
Q 027184 151 EEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP-----IQDPEEAAKRLMQEAYQR-----------------------G 202 (227)
Q Consensus 151 ~~~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~-----~~~~~~~a~~l~~~a~~~-----------------------g 202 (227)
.+.+.++ |+|||+||||||++.+++|.+++.. ..+++..|+.|++.|... |
T Consensus 240 ~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gG 318 (330)
T KOG1379|consen 240 SFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGG 318 (330)
T ss_pred EEeccCC-CEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCC
Confidence 8888875 9999999999999999999998854 357999999999998652 5
Q ss_pred CCCccEEEEEEe
Q 027184 203 SADNITCVVVRF 214 (227)
Q Consensus 203 ~~DN~T~ivv~~ 214 (227)
+.||||+|+..+
T Consensus 319 K~DdITvvls~v 330 (330)
T KOG1379|consen 319 KPDDITVVLSSV 330 (330)
T ss_pred CcccEEEEEecC
Confidence 689999998753
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-24 Score=169.17 Aligned_cols=214 Identities=29% Similarity=0.468 Sum_probs=160.2
Q ss_pred eeeCCChHHHHHHHHHHHHHHHHhCCC----------------------------------------CcccHHHHHHHHH
Q 027184 2 VFSGHGGARAAEYVKHNLFSNLIRHPK----------------------------------------FISDTKSAIADAY 41 (227)
Q Consensus 2 V~DG~GG~~~~~~a~~~~~~~l~~~~~----------------------------------------~~~~~~~~l~~~~ 41 (227)
+||||.|..++-.|++.+-+.+.+... ...-...+|+.||
T Consensus 149 lfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAF 228 (493)
T KOG1323|consen 149 LFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAF 228 (493)
T ss_pred eecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHHHHHHH
Confidence 689999999999999887665543210 0001234678888
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEEECCEEEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcC--------
Q 027184 42 SHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAG-------- 113 (227)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~gtT~~~~~i~~~~~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~g-------- 113 (227)
+..+.+|.+....-...+|+|+.+++..-+++|++|.||||++++|++.++.++.+-++. .|++|++..+
T Consensus 229 qemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~Laf~~PeLlg 306 (493)
T KOG1323|consen 229 QEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELAFRNPELLG 306 (493)
T ss_pred HHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHhhcChHhhc
Confidence 888888877766667778999999999999999999999999999999999999998875 5667776532
Q ss_pred CeEEe------------------C--------------------------CcceeCCeeccccccCccccc---------
Q 027184 114 GFVMW------------------A--------------------------GTWRVGGVLAVSRAFGDRLLK--------- 140 (227)
Q Consensus 114 g~~~~------------------~--------------------------~~~~~~~~~~~t~~lg~~~~~--------- 140 (227)
+..++ . ...++-+.+.++|.+||..++
T Consensus 307 neFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iK 386 (493)
T KOG1323|consen 307 NEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIK 386 (493)
T ss_pred ccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccc
Confidence 22110 0 111222467889999998765
Q ss_pred cCccCCCceEEEEeC----CCCeEEEEEcCCCcccCChHHHHHhhccC------CCHH---HHHHHHHHHHHHc------
Q 027184 141 QYVVADPEIQEEVID----SSLEFLILASDGLWDVVTNEEAVAMIKPI------QDPE---EAAKRLMQEAYQR------ 201 (227)
Q Consensus 141 ~~~~~~~~i~~~~~~----~~~d~lll~SDGv~d~l~~~~i~~~~~~~------~~~~---~~a~~l~~~a~~~------ 201 (227)
|.+++.|+++...+. ..+|++||+|||+||.++++++..+++.. .+|. .+|+.|+..|...
T Consensus 387 PFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgW 466 (493)
T KOG1323|consen 387 PFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGW 466 (493)
T ss_pred hhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCce
Confidence 678899999998887 45689999999999999999999888653 2333 3667777665421
Q ss_pred -------CCCCccEEEEEEecCC
Q 027184 202 -------GSADNITCVVVRFLAN 217 (227)
Q Consensus 202 -------g~~DN~T~ivv~~~~~ 217 (227)
|+.|||||.||-+..-
T Consensus 467 r~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 467 RMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred eccCCCcCCCCceEEEEEeccCC
Confidence 4579999999988654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-19 Score=159.94 Aligned_cols=212 Identities=26% Similarity=0.426 Sum_probs=177.6
Q ss_pred eeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEEC--------CEE
Q 027184 2 VFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVG--------DRL 73 (227)
Q Consensus 2 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~~--------~~~ 73 (227)
.+||-+......+.-..+.+.+.+......+-.+.|+..|...++++.... ..-|..++.+.+.. .++
T Consensus 556 ~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g----~~lg~~~~~~~i~~d~~~~asS~~l 631 (1081)
T KOG0618|consen 556 CFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEG----QVLGGSVVLCQIVEDSLSPASSKTL 631 (1081)
T ss_pred EEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhh----ccccchhhheeecccccCcccchhh
Confidence 456766666777777777777766554444555569999999999985442 22445555555553 368
Q ss_pred EEEEcccCcEEEEeCCeeeeCCCCCCC-CChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEE
Q 027184 74 LVANVGDSRAVICRGGNAIAVSRDHKP-DQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEE 152 (227)
Q Consensus 74 ~~~~vGDSr~y~~r~~~~~~lt~dh~~-~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~ 152 (227)
+.||+|+|.+.+.++|+..++|+-... ..+.|.+||..++|+++. ..+.+|....||++|.....|.+.+.|++...
T Consensus 632 ~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~e--d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~ 709 (1081)
T KOG0618|consen 632 FAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITE--DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVV 709 (1081)
T ss_pred hHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecC--CCeeeceeeeeeecccccccccccCCCceeeE
Confidence 999999999999999998888877543 378999999999999976 46788888999999999999999999999999
Q ss_pred EeCCCCeEEEEEcCCCcccCChHHHHHhhccCCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCCC
Q 027184 153 VIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 219 (227)
Q Consensus 153 ~~~~~~d~lll~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~~ 219 (227)
.+.+.+++||+++-++|++++-++..+++++..+|-.+|.+|++.|.++|..||++++|+++....+
T Consensus 710 ~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 710 ILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred ecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhcccccCeeEEEEEeecchh
Confidence 9998889999999999999999999999998899999999999999999999999999999987653
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.82 E-value=1.3e-18 Score=133.42 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=115.2
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEE--ECCEEEEEEc
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIL--VGDRLLVANV 78 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i--~~~~~~~~~v 78 (227)
+|+||||+...|.+++..+...+.+....... +.+.+..+++.+... ....+++|++++++ ..++++++|+
T Consensus 34 ~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n~~l~~~---~~~~~~~T~~~~~id~~~~~l~~~~~ 106 (193)
T smart00331 34 AIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLNRAIYEN---GEDGMFATLFLALYDFAGGTLSYANA 106 (193)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhc---CCCCcEEEEEEEEEECCCCEEEEEeC
Confidence 58999999989999999988888765433222 455666677776554 23457999999998 5779999999
Q ss_pred ccCcEEEEe-CCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEEeCCC
Q 027184 79 GDSRAVICR-GGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSS 157 (227)
Q Consensus 79 GDSr~y~~r-~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~~~~~ 157 (227)
||+|+|+++ ++...+++.+. +..+|... ...+....+.+.++
T Consensus 107 Gd~~~~~~~~~~~~~~~~~~~--------------------------------~~~lG~~~-----~~~~~~~~~~l~~g 149 (193)
T smart00331 107 GHSPPYLLRADGGLVEDLDDL--------------------------------GAPLGLEP-----DVEVDVRELTLEPG 149 (193)
T ss_pred CCCceEEEECCCCeEEEcCCC--------------------------------CceeeeCC-----CCcceeEEEeeCCC
Confidence 999999999 56555555542 33455321 23456677777775
Q ss_pred CeEEEEEcCCCcccCChHHHHHhhccC--CCHHHHHHHHHHHHH
Q 027184 158 LEFLILASDGLWDVVTNEEAVAMIKPI--QDPEEAAKRLMQEAY 199 (227)
Q Consensus 158 ~d~lll~SDGv~d~l~~~~i~~~~~~~--~~~~~~a~~l~~~a~ 199 (227)
|.|+|+|||+++.+.++++.+++.++ .+++++++++++.+.
T Consensus 150 -d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 150 -DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred -CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 89999999999999999999988875 368888998887654
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.82 E-value=1.8e-19 Score=140.31 Aligned_cols=153 Identities=22% Similarity=0.307 Sum_probs=83.6
Q ss_pred CeeeCCChHHH----HHHHHHHHHHHHHhCCCCcccH--HHHHHHHHHHHHHHH-----HhhcCCCCCCCCceEEEEEEE
Q 027184 1 MVFSGHGGARA----AEYVKHNLFSNLIRHPKFISDT--KSAIADAYSHTDSEF-----LKSENNQNRDAGSTASTAILV 69 (227)
Q Consensus 1 ~V~DG~GG~~~----~~~a~~~~~~~l~~~~~~~~~~--~~~l~~~~~~~~~~~-----~~~~~~~~~~~gtT~~~~~i~ 69 (227)
+|||||||... +.++++.+.+.+.+........ ...++.....+...+ ..........++||++++++.
T Consensus 28 aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~ 107 (212)
T PF13672_consen 28 AVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVID 107 (212)
T ss_dssp EEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEE
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEE
Confidence 69999995555 4455555555555554332222 222333333333221 111244566789999999999
Q ss_pred CCEEEEEEcccCcEEE-EeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCc
Q 027184 70 GDRLLVANVGDSRAVI-CRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPE 148 (227)
Q Consensus 70 ~~~~~~~~vGDSr~y~-~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~ 148 (227)
+++++++|+||||+|+ .+++++..++.+|+... . ..+..+.... ......
T Consensus 108 ~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~----~---------------------~~~~~~~~~~----~~~~~~ 158 (212)
T PF13672_consen 108 PDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY----P---------------------NQTRSLTGDD----PEPDVQ 158 (212)
T ss_dssp TTEEEEEEESS-EEEEEEETTEEEE-S---BHHH----H---------------------HCTTSCCHHC----CCTETE
T ss_pred CCEEEEEEECCCeEEEEECCCEEEEcCCCccchh----h---------------------hhhhccCccc----cccCCe
Confidence 9999999999999975 58999999999986211 1 1133333211 011224
Q ss_pred eEEEEeCCCCeEEEEEcCCCcccCChHH-HHHhhcc
Q 027184 149 IQEEVIDSSLEFLILASDGLWDVVTNEE-AVAMIKP 183 (227)
Q Consensus 149 i~~~~~~~~~d~lll~SDGv~d~l~~~~-i~~~~~~ 183 (227)
+..+.+.+ ++.|+|||||||+.+...+ +..++.+
T Consensus 159 ~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 159 YGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp EEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred EEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 44455445 5899999999999998654 6666654
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.74 E-value=1.2e-16 Score=144.45 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=121.7
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE--CCEEEEEEc
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV--GDRLLVANV 78 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~v 78 (227)
+|+||||+...|..++..+.+.+.+......+ ...++..+|..+.... ...+.+|+.+++++ .+++.++++
T Consensus 584 ~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~---~~~~faTl~l~~IDl~~g~~~~~~a 656 (764)
T TIGR02865 584 AISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRS---TDEKFSTLDLSVIDLYTGQAEFVKV 656 (764)
T ss_pred EEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCC---CCCeEEEEEEEEEECCCCeEEEEec
Confidence 48999997777777777777766543211112 2556777777765432 22368999999986 689999999
Q ss_pred ccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEEeCCCC
Q 027184 79 GDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSL 158 (227)
Q Consensus 79 GDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~~~~~~ 158 (227)
|+++.|++|++++.+++..+.+ +|-. ...+++.....+.++
T Consensus 657 G~~p~~i~r~~~v~~i~s~~lP---------------------------------lGil-----~~~~~~~~~~~L~~G- 697 (764)
T TIGR02865 657 GAVPSFIKRGAKVEVIRSSNLP---------------------------------IGIL-----DEVDVELVRKKLKNG- 697 (764)
T ss_pred CCCceEEEECCEEEEecCCCce---------------------------------eEec-----cCCccceEEEEeCCC-
Confidence 9999999999998888754332 1211 123456667777775
Q ss_pred eEEEEEcCCCcccCChHH-----HHHhhcc--CCCHHHHHHHHHHHHHHcC---CCCccEEEEEEe
Q 027184 159 EFLILASDGLWDVVTNEE-----AVAMIKP--IQDPEEAAKRLMQEAYQRG---SADNITCVVVRF 214 (227)
Q Consensus 159 d~lll~SDGv~d~l~~~~-----i~~~~~~--~~~~~~~a~~l~~~a~~~g---~~DN~T~ivv~~ 214 (227)
|+|+|+|||++|...+.+ +.+.+.+ ..+|+++++.|++.+.+.. ..||+|++++++
T Consensus 698 D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 698 DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 899999999999876433 6777754 3589999999999997653 479999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.65 E-value=2.6e-14 Score=109.45 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=108.0
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE--CCEEEEEEc
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV--GDRLLVANV 78 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~v 78 (227)
+|+|++|....|.+.+..+...+........+ ..+.+..+|+.+....... ...+|++++.+. .++++++|+
T Consensus 8 ~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l~~~~a 81 (193)
T PF07228_consen 8 IVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTLTYANA 81 (193)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEEEEeCC
Confidence 48999995555555555555555432211112 4455666666664442222 367888888876 568999999
Q ss_pred ccCcEEEEeC--CeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEEeCC
Q 027184 79 GDSRAVICRG--GNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDS 156 (227)
Q Consensus 79 GDSr~y~~r~--~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~~~~ 156 (227)
|+++++++++ +....+..... .+|-.. ........+.+.+
T Consensus 82 G~~~~l~~~~~~~~~~~~~~~~~---------------------------------~lG~~~-----~~~~~~~~~~l~~ 123 (193)
T PF07228_consen 82 GHPPPLLLRPGGREIEQLESEGP---------------------------------PLGIFE-----DIDYQEQEIQLEP 123 (193)
T ss_dssp SSSEEEEEETTCTEEEEETCSSB---------------------------------BCSSSC-----TTCEEEEEEE--T
T ss_pred CCCCEEEEeccccceeecccCcc---------------------------------ceeeec-----cccccceEEEecc
Confidence 9999999998 33444433222 134211 1334455666666
Q ss_pred CCeEEEEEcCCCcccCChH-------HHHHhhcc--CCCHHHHHHHHHHHHHHc---CCCCccEEEEEEec
Q 027184 157 SLEFLILASDGLWDVVTNE-------EAVAMIKP--IQDPEEAAKRLMQEAYQR---GSADNITCVVVRFL 215 (227)
Q Consensus 157 ~~d~lll~SDGv~d~l~~~-------~i~~~~~~--~~~~~~~a~~l~~~a~~~---g~~DN~T~ivv~~~ 215 (227)
||.|+|+||||+|....+ .+.+.+.+ ..++++.++.|++.+... ...||+|+++++++
T Consensus 124 -gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 124 -GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp -TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred -ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 599999999999998433 33556653 357999999999988873 47899999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.74 E-value=1.5e-06 Score=73.29 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=106.0
Q ss_pred CeeeCCC-hHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE--CCEEEEE
Q 027184 1 MVFSGHG-GARAAEYVKHNLFSNLIRHPKF-ISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV--GDRLLVA 76 (227)
Q Consensus 1 ~V~DG~G-G~~~~~~a~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~~~~~~~ 76 (227)
+|+|.+| |-.++-. +......+...... .-++ .+.++.+|+.+....... +-+|+...+++ ...+.++
T Consensus 179 ~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p----~~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~~l~y~ 250 (367)
T COG2208 179 GIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDP----ADVLETLNRVLKQNLEED---MFVTLFLGVYDLDSGELTYS 250 (367)
T ss_pred EEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCH----HHHHHHHHHHHHhcccCC---cEEEEEEEEEeccCCEEEEe
Confidence 3789999 6655554 33333333322211 1223 334555555555432222 77888888876 6789999
Q ss_pred EcccCcEEEEeCCee---eeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCCceEEEE
Q 027184 77 NVGDSRAVICRGGNA---IAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEV 153 (227)
Q Consensus 77 ~vGDSr~y~~r~~~~---~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~~i~~~~ 153 (227)
++|---.++++.+.- ..+. .....+|... ...+.+....
T Consensus 251 ~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~piG~~~-----~~~~~~~~~~ 292 (367)
T COG2208 251 NAGHEPALILSADGEIEVEDLT---------------------------------ALGLPIGLLP-----DYQYEVASLQ 292 (367)
T ss_pred eCCCCCeeEEEcCCCceeEEcc---------------------------------CCCceeeecC-----CccchheeEE
Confidence 999999999987642 2222 1233445321 3445556666
Q ss_pred eCCCCeEEEEEcCCCcc-------cCChHHHHHhhc--cCCCHHHHHHHHHHHHHHc----CCCCccEEEEEEec
Q 027184 154 IDSSLEFLILASDGLWD-------VVTNEEAVAMIK--PIQDPEEAAKRLMQEAYQR----GSADNITCVVVRFL 215 (227)
Q Consensus 154 ~~~~~d~lll~SDGv~d-------~l~~~~i~~~~~--~~~~~~~~a~~l~~~a~~~----g~~DN~T~ivv~~~ 215 (227)
+.+ ||.++|.|||+.+ .+..+...+.+. ...+++++++.+.+..... ...||+|++++++.
T Consensus 293 l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 293 LEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred ecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 667 6999999999999 445555666665 2357888888888776553 34688999999975
No 20
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=96.11 E-value=0.0067 Score=49.94 Aligned_cols=50 Identities=26% Similarity=0.386 Sum_probs=39.9
Q ss_pred CeeeCCChHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHHHHh
Q 027184 1 MVFSGHGGARAAEYVKHNLFSNLIRHPKFI-SDTKSAIADAYSHTDSEFLK 50 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 50 (227)
.|.|||||.+.+.|++..+.+.|.+...+. .+....|+++|...+..+..
T Consensus 54 ~VYDGHGG~EVa~yca~kLPdflK~~k~yk~g~~~~aL~~AFl~fD~~l~~ 104 (542)
T KOG0699|consen 54 GVYDGHGGTEVAKYCAAKLPDFLKERKFYKAGDVAEALQKAFLDFDDFLRA 104 (542)
T ss_pred EEecCCCcHHHHHHHHHhhhHHHHhHHhhhcccHHHHHHHHHhchhhhhcC
Confidence 489999999999999999999998765432 35778889988877765543
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=72.83 E-value=2.4 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.2
Q ss_pred eCCCCeEEEEEcCCCcccCChHH
Q 027184 154 IDSSLEFLILASDGLWDVVTNEE 176 (227)
Q Consensus 154 ~~~~~d~lll~SDGv~d~l~~~~ 176 (227)
+...|..+++++||+|=.+...-
T Consensus 23 l~~~G~Rllva~nGv~lEv~r~W 45 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRRPW 45 (72)
T ss_pred cccCCcEEEEecCcEEEEEechH
Confidence 34467999999999997665443
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=59.76 E-value=82 Score=25.76 Aligned_cols=50 Identities=4% Similarity=-0.035 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEEEE--CCEEEEEEcccCcEEEEeCCee
Q 027184 38 ADAYSHTDSEFLKSENNQNRDAGSTASTAILV--GDRLLVANVGDSRAVICRGGNA 91 (227)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~~~~~~~~vGDSr~y~~r~~~~ 91 (227)
.+.+..+|+.+....... .-|+...+++ .+.+.+++.|-...++..++++
T Consensus 208 ~~~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 208 GALLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 455667777776542221 1477777776 5689999999999885444444
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=58.80 E-value=20 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCcc-----------cCChHHHHHhhcc----CCCHHHHHHHHHHHHHHcC
Q 027184 158 LEFLILASDGLWD-----------VVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRG 202 (227)
Q Consensus 158 ~d~lll~SDGv~d-----------~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~g 202 (227)
+|.+|..|.|+|. +|..+..-+.+.+ ..-|.+.|+.|+++-.++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 4778888888874 4445555555543 3469999999999988875
No 24
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=50.81 E-value=8.2 Score=25.77 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCcccCChHHHHHhhccCCCHHHHHHHHHHHHHHcCCCCccE
Q 027184 157 SLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNIT 208 (227)
Q Consensus 157 ~~d~lll~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~T 208 (227)
++|-++|+.|||+-.+...+..+-++.. | ..+=.|.+...+||-.+.++
T Consensus 24 ~~D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 24 EGDAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred ccCeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhcC
Confidence 4589999999999888777666655552 2 22223344445555444433
No 25
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=49.60 E-value=33 Score=16.91 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.2
Q ss_pred EEECCEEEEEEcccCcEEEE
Q 027184 67 ILVGDRLLVANVGDSRAVIC 86 (227)
Q Consensus 67 ~i~~~~~~~~~vGDSr~y~~ 86 (227)
+-.++.+|++-.|..|+.+|
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33788999999999998764
No 26
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=43.77 E-value=27 Score=21.06 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=20.4
Q ss_pred CChHHHHHhhcc-CCCHHHHHHHHHH
Q 027184 172 VTNEEAVAMIKP-IQDPEEAAKRLMQ 196 (227)
Q Consensus 172 l~~~~i~~~~~~-~~~~~~~a~~l~~ 196 (227)
-++++|...+.. +-+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578899888865 4699999999986
No 27
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=39.46 E-value=11 Score=31.73 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=74.0
Q ss_pred EECCEEEEEEcccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHHcCCeEEeCCcceeCCeeccccccCccccccCccCCC
Q 027184 68 LVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADP 147 (227)
Q Consensus 68 i~~~~~~~~~vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~t~~lg~~~~~~~~~~~~ 147 (227)
|+.+++|+-.-||-|.|-++.|+....+.-..+.++..-+.| .+ +...+.|+||+....=.-..-.
T Consensus 190 ID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kI-gs-------------~~YG~Prwig~ivslygarkAe 255 (492)
T COG5518 190 IDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKI-GS-------------GAYGLPRWIGAIVSLYGARKAE 255 (492)
T ss_pred eccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhh-cc-------------cccCchHHHHHHHHHHhhhhHH
Confidence 556789999999999999999976655554444333222211 11 1223455665321000000001
Q ss_pred ceEEEEeCCCC--eEEEEEcCCCcccCChHHHHHhhccCCCHHHHHHHHHHHHHHc-----CCCCccEEEEEEec
Q 027184 148 EIQEEVIDSSL--EFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQR-----GSADNITCVVVRFL 215 (227)
Q Consensus 148 ~i~~~~~~~~~--d~lll~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~-----g~~DN~T~ivv~~~ 215 (227)
.+....+.++. -+.|..+||..+.-+-..+.+.+.....++.+=+.|+=.+... .+..|+|-+-|.+.
T Consensus 256 eln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~Ik 330 (492)
T COG5518 256 ELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQIK 330 (492)
T ss_pred HHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEee
Confidence 11111112211 2788999999888788888888887766666555554333211 13456776666554
No 28
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=35.71 E-value=6.9 Score=25.16 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=28.1
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHHcCCCCccEEEEEEecCCCCCCCCC
Q 027184 172 VTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSSFP 224 (227)
Q Consensus 172 l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~T~ivv~~~~~~~~~~~~ 224 (227)
++.++-..+=...++....+++|++....+ +.|-+.-.+..+......+++|
T Consensus 34 lswEDYe~~~~~~~PL~~~aR~LLD~V~~K-Ge~~C~~fl~a~~ea~~esq~~ 85 (87)
T cd08787 34 LSWEDYEGFHVLGQPLSHNARQLLDTVYNK-GEWACQKFLAAAQQALAEEQSA 85 (87)
T ss_pred hhHHHHhhhhhcCCchHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhcccccCC
Confidence 444444433333346667899999887776 4454444444444444444443
No 29
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=34.08 E-value=94 Score=20.07 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHHcC
Q 027184 171 VVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 202 (227)
Q Consensus 171 ~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g 202 (227)
.++++|+..+-.......+.|+.|++....+|
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG 61 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKG 61 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 46778888887766678999999999887765
No 30
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.82 E-value=96 Score=16.85 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=21.4
Q ss_pred CcccCChHHHHHhhc-cCCCHHHHHHHHHHH
Q 027184 168 LWDVVTNEEAVAMIK-PIQDPEEAAKRLMQE 197 (227)
Q Consensus 168 v~d~l~~~~i~~~~~-~~~~~~~~a~~l~~~ 197 (227)
+|-.++.+.|..++. ...+.+.+.+.|++.
T Consensus 11 mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 11 MFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 355678888988884 446888888888764
No 31
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=29.69 E-value=86 Score=20.24 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=23.2
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHHcC
Q 027184 172 VTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 202 (227)
Q Consensus 172 l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g 202 (227)
++..|-.++......+.+-|++|++.+..+|
T Consensus 29 is~~Ecd~Ir~p~~T~sqqARrLLD~V~~KG 59 (81)
T cd08788 29 FSSYDCDEIRLPIFTPSQQARRLLDLVKAKG 59 (81)
T ss_pred ccHhhcchhhcCCCChHHHHHHHHHHHHHHh
Confidence 4555555666656789999999999987765
No 32
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=28.95 E-value=35 Score=26.12 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=33.3
Q ss_pred eCCCCeEEEEEcCCCcccCChHHHHHhhc--c-C------------------CCHHHHHHHHHHHHHHc
Q 027184 154 IDSSLEFLILASDGLWDVVTNEEAVAMIK--P-I------------------QDPEEAAKRLMQEAYQR 201 (227)
Q Consensus 154 ~~~~~d~lll~SDGv~d~l~~~~i~~~~~--~-~------------------~~~~~~a~~l~~~a~~~ 201 (227)
+...|..+++++||+|=.+....+.-+.. . . .=+....++++++|.+.
T Consensus 22 l~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 22 LEKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred cccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 34557899999999998877665543321 1 0 23667888999998775
No 33
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.93 E-value=1.1e+02 Score=21.75 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.3
Q ss_pred eEEEEEEECCEEEEEEcccCcEEEEe--CCeeeeCCCCCCCC
Q 027184 62 TASTAILVGDRLLVANVGDSRAVICR--GGNAIAVSRDHKPD 101 (227)
Q Consensus 62 T~~~~~i~~~~~~~~~vGDSr~y~~r--~~~~~~lt~dh~~~ 101 (227)
-++.|+..++.+|++++ .|+|. +-.+..+|.||+..
T Consensus 14 v~Tw~~~~e~~~w~asa----fYvFDek~~ali~~T~e~TrH 51 (145)
T COG3787 14 VLTWCVQQEGELWCASA----FYVFDEKNVALIILTEEKTRH 51 (145)
T ss_pred eeeeeeecCCceeeeee----EEEEcccceEEEEEeccchhH
Confidence 35678888889988864 78885 44588899999865
No 34
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=27.33 E-value=88 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCCCceEEEEEEECCEEEEEEcccC
Q 027184 57 RDAGSTASTAILVGDRLLVANVGDS 81 (227)
Q Consensus 57 ~~~gtT~~~~~i~~~~~~~~~vGDS 81 (227)
..+|+|.+.+ +.++.+|..|+|-+
T Consensus 130 ~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 130 ALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp -BSS-EEEEE-EETTEEEEEEEEES
T ss_pred ccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 4567777666 68999999999976
No 35
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=26.61 E-value=53 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=11.8
Q ss_pred CeeeCCChHHHHHHH
Q 027184 1 MVFSGHGGARAAEYV 15 (227)
Q Consensus 1 ~V~DG~GG~~~~~~a 15 (227)
+|-||.||.-...+.
T Consensus 3 ~VIDGQGGGiG~~iv 17 (131)
T PF12953_consen 3 AVIDGQGGGIGKQIV 17 (131)
T ss_pred EEEeCCCChhHHHHH
Confidence 588999998776664
No 36
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.92 E-value=92 Score=20.42 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=15.7
Q ss_pred CceEEEEeCCCCeEEEEEcCC
Q 027184 147 PEIQEEVIDSSLEFLILASDG 167 (227)
Q Consensus 147 ~~i~~~~~~~~~d~lll~SDG 167 (227)
..+....+..+||.++|+||.
T Consensus 42 ~~~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 42 HLYALSYVDDEGDIVLITSDS 62 (86)
T ss_pred CcccEEEEcCCCCEEEEeccc
Confidence 345555667778999999995
No 37
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=21.71 E-value=1.3e+02 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=13.8
Q ss_pred EEEEECCEEEEEEcccC
Q 027184 65 TAILVGDRLLVANVGDS 81 (227)
Q Consensus 65 ~~~i~~~~~~~~~vGDS 81 (227)
++++.+++++++-+||+
T Consensus 69 ~aVv~~~k~~y~I~GDt 85 (156)
T PF07335_consen 69 AAVVCNGKVVYAIVGDT 85 (156)
T ss_pred EEEEECCEEEEEEEecc
Confidence 34455999999999997
No 38
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=21.50 E-value=1e+02 Score=20.11 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=21.4
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHHcC
Q 027184 172 VTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 202 (227)
Q Consensus 172 l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~g 202 (227)
+++++... +....++++.++.|.+.+.+.|
T Consensus 30 it~E~y~~-V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 30 FSTEDAEI-VCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred ccHHHHHH-HHhCCCCHHHHHHHHHHHHhcC
Confidence 55565544 4444789999999999876665
No 39
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=21.21 E-value=3.2e+02 Score=19.50 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHH--HcCCCCccEEEEEEecCCCCCCCCCCCC
Q 027184 185 QDPEEAAKRLMQEAY--QRGSADNITCVVVRFLANQGGSSFPGSA 227 (227)
Q Consensus 185 ~~~~~~a~~l~~~a~--~~g~~DN~T~ivv~~~~~~~~~~~~~~~ 227 (227)
.+++++++.+++.-. +....++..-.++-+...+.++..|+++
T Consensus 53 lsp~~~~~~~v~aw~~~R~~~g~~~~h~ilaLGGrKds~a~p~sP 97 (132)
T PF10847_consen 53 LSPDEMAEELVRAWKQYRNSLGHSMNHDILALGGRKDSPASPGSP 97 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccchhhhhccccCCCCCCCCC
Confidence 467888887776332 2334566666667777777777777764
No 40
>PRK02391 heat shock protein HtpX; Provisional
Probab=21.06 E-value=91 Score=25.61 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcccCChHHHHHhhcc
Q 027184 159 EFLILASDGLWDVVTNEEAVAMIKP 183 (227)
Q Consensus 159 d~lll~SDGv~d~l~~~~i~~~~~~ 183 (227)
..+|+.|||+.+.++++|+..++..
T Consensus 115 ~~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 115 NAVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred CcEEEecHHHHhhCCHHHHHHHHHH
Confidence 4678999999999999999887743
No 41
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.48 E-value=1.8e+02 Score=16.48 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=21.5
Q ss_pred cccCcEEEEeCCeeeeCCCCCCCCChhHHHHHHH
Q 027184 78 VGDSRAVICRGGNAIAVSRDHKPDQTDERQRIED 111 (227)
Q Consensus 78 vGDSr~y~~r~~~~~~lt~dh~~~~~~~~~~i~~ 111 (227)
.||.|+-++....-..|+-++.+.......-+..
T Consensus 3 ~~eerV~Vi~~~tGk~l~G~~AP~~~~L~~WL~~ 36 (46)
T PF07533_consen 3 TGEERVPVINRKTGKRLTGDEAPKLKELEEWLEE 36 (46)
T ss_dssp TTTSB--EEETTTTEEE-CCCS-BCCCHHHHHHH
T ss_pred CCcceeEeEECCCCCCcccccCcCHHHHHHHHHH
Confidence 4899999998888888888887766544444443
No 42
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=20.46 E-value=3.6e+02 Score=19.86 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCcccCChHHHHH--------hhccCCCHHHHHHHHHHHHHHc-CCCCccEEEEEEecCC
Q 027184 148 EIQEEVIDSSLEFLILASDGLWDVVTNEEAVA--------MIKPIQDPEEAAKRLMQEAYQR-GSADNITCVVVRFLAN 217 (227)
Q Consensus 148 ~i~~~~~~~~~d~lll~SDGv~d~l~~~~i~~--------~~~~~~~~~~~a~~l~~~a~~~-g~~DN~T~ivv~~~~~ 217 (227)
++..+...+++.++++..||.-.-+....... .+....++.++.+.+-+..... ....-+|++++.++..
T Consensus 19 D~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~~~~~~T~~~~~id~~ 97 (193)
T smart00331 19 DFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGEDGMFATLFLALYDFA 97 (193)
T ss_pred cEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC
Confidence 33333333334688899999987665444332 2222246777777766655554 3445688888877443
Done!