BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027188
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 161/232 (69%), Gaps = 9/232 (3%)
Query: 1 MLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEW 60
M NLGG PA PPP R + PDG P VK+RLCNKYN+AEGCK+GDKCHFAHGE
Sbjct: 70 MTNLGG-PAIAPPPGRMPMGN-AVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGER 127
Query: 61 ELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAII 120
ELG+P + P MG G P ++ ASFGASATAKIS+DA LAG II
Sbjct: 128 ELGKPMLMDSSMPPPMGPRPTGHFAPPPMPS-PAMSTPASFGASATAKISVDASLAGGII 186
Query: 121 GKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSGSG 180
G+ GVN+KQI R+TGAKL+IRDHE D NL+NIELEGTFDQIK ASAMVRELIV++G G+
Sbjct: 187 GRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSIGGGAP 246
Query: 181 HSMK------SNSSSQSNNFKTKLCENFAKGSCTFGDRCHFAHGSEELRKSV 226
K +NFKTKLCENF KGSCTFGDRCHFAHG ELRKS
Sbjct: 247 PQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRKSA 298
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 195 KTKLCENFAKGS-CTFGDRCHFAHGSEELRKSVI 227
KT+LC + C +GD+CHFAHG EL K ++
Sbjct: 101 KTRLCNKYNTAEGCKWGDKCHFAHGERELGKPML 134
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAH 57
KS+ C K+ S GC FG+ CHF H
Sbjct: 35 KSKPCTKFFSTSGCPFGEGCHFLH 58
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 234 bits (597), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/232 (56%), Positives = 156/232 (67%), Gaps = 18/232 (7%)
Query: 1 MLNLGGTPAHPPPPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEW 60
M + GGT PP G P P+G +VK+R+CNKYN+AEGCK+G KCHFAHGE
Sbjct: 69 MTSHGGTAVAAPPGRMPLG--PGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGER 126
Query: 61 ELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQ---SLGAAASFGASATAKISIDAKLAG 117
ELG+P + P MG E PP + ++FGASATAKIS+DA LAG
Sbjct: 127 ELGKPMLLDNSMPHPMGS-------MPFEAPPMPGPDIVPPSTFGASATAKISVDASLAG 179
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177
IIGK G N+K I R+TGAKL+IRD+E +PNL+NIELEGTFDQIK ASAMV ELIV + S
Sbjct: 180 GIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRI-S 238
Query: 178 GSGHSMK-----SNSSSQSNNFKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224
G+ K S++ +NFKTKLCENF KGSCTFGDRCHFAHG ELRK
Sbjct: 239 GNAPPAKNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP 65
K++LC +N C FGD+CHFAHGE EL +P
Sbjct: 260 FKTKLCENFNKGS-CTFGDRCHFAHGESELRKP 291
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 191 SNNFKTKLCE--NFAKGSCTFGDRCHFAHGSEELRKSVI 227
+++ KT++C N A+G C +G +CHFAHG EL K ++
Sbjct: 96 TSSVKTRMCNKYNTAEG-CKWGSKCHFAHGERELGKPML 133
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 28 SSPPAVKSRL--CNKYNSAEGCKFGDKCHFAH 57
SS V S+L C K+ S GC FG CHF H
Sbjct: 26 SSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLH 57
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 229 bits (585), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/213 (61%), Positives = 147/213 (69%), Gaps = 17/213 (7%)
Query: 27 GSSPPAV--KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRM 84
G+S PA K+R+C KYN+AEGCKFGDKCHFAHGE ELG+P S+E AM PM GR
Sbjct: 96 GNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHES--AMAPPMGGRY 153
Query: 85 GGRLEPPPQSLGAAA--SFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRD 142
GGR EPPP + +FGASATAKIS+DA LAG IIGK GVN+KQICR+TG KLSIRD
Sbjct: 154 GGRPEPPPPAAMGPPAGNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRD 213
Query: 143 HEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG-----------SGSGHSMKSNSSSQS 191
HE D NL+NIELEG FDQIKQAS MV ELI + +
Sbjct: 214 HESDSNLKNIELEGNFDQIKQASNMVGELIATISPSTPAKKPAGSAAGAAPAGRGGPGGR 273
Query: 192 NNFKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224
+N+KTKLCENF KG+CTFGDRCHFAHG E RK
Sbjct: 274 SNYKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 23 SFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAH 57
SF G S K + C K+ S GC FG+ CHF+H
Sbjct: 31 SFQTGLSS---KLKPCTKFFSTIGCPFGEGCHFSH 62
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 133/207 (64%), Gaps = 18/207 (8%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAH---GEWELG------RPTVPSY-EDPRAMGGPMHGR 83
KS+ C K+ S GC FGD CHF H G + RP V + + GGP GR
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGP-GGR 96
Query: 84 MGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 143
GR +P G + FGAS T+KIS+DA LAGAIIGK G++SKQICR TGAKLSI+DH
Sbjct: 97 FSGRGDP---GSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDH 152
Query: 144 EVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSG---SGHSMKSNSSSQSNNFKTKLCE 200
E DPNL+ IELEGTF+QI AS MVRELI +GS G +N+KTK+C+
Sbjct: 153 ERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICD 212
Query: 201 NFAKGSCTFGDRCHFAHGSEELRKSVI 227
++KG+CT+GDRCHFAHG ELR+S I
Sbjct: 213 RYSKGNCTYGDRCHFAHGESELRRSGI 239
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 132/213 (61%), Gaps = 22/213 (10%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAH---GEW----ELGRPTVPSYEDPRAMGGPMHG-RMG 85
KS+ C K+ S GC FG+ CHF H G + ++ P + R M G +G R
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFS 97
Query: 86 GRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV 145
GR E P G ++FG SATA+ S+DA LAGAIIGK GV+SKQICR TG KLSI+DHE
Sbjct: 98 GRGESGP---GHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHER 154
Query: 146 DPNLRNIELEGTFDQIKQASAMVRELIVNVGSGSGHSMKSNSSSQS-----------NNF 194
DPNL+NI LEGT +QI +ASAMV++LI + S + +NF
Sbjct: 155 DPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNF 214
Query: 195 KTKLCENFAKGSCTFGDRCHFAHGSEELRKSVI 227
KTK+CE F+KG+CTFGDRCHFAHG ELRKS I
Sbjct: 215 KTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 84/221 (38%), Gaps = 17/221 (7%)
Query: 13 PPPRNSGAPPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYE- 71
PPP N G F K+R+C K+ A C+ G+ C+FAHG +L +P E
Sbjct: 93 PPPVNKGTANIF--------YKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQEI 143
Query: 72 -DPRAMGGPMHGRMGGRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQI 130
P G E SL + KI + KL
Sbjct: 144 VGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDR 203
Query: 131 CRLTGAKLSIRDHEVDPNLRN---IELEGTF-DQIKQASAMVRELIVNVGSGSGHSMKSN 186
C LS + E LR I + T DQ ++ + E+ M +
Sbjct: 204 CNFIHEDLS-KFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNG 262
Query: 187 SSSQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEELRKSV 226
++ +KT+LC F G C FGD+CHFAHG EL SV
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 194 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224
FKTKLC F G+C + C+FAHG EELRK
Sbjct: 88 FKTKLCCKFRAGTCPYVTNCNFAHGMEELRK 118
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 192 NNFKTKLCENFA-KGSCTFGDRCHFAHGSEELRK 224
+N+KT++C + G C FG +CHFAHG+ EL K
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 30 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 64
P K+R+CNK+ C FG KCHFAHG EL +
Sbjct: 243 PSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 32 AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 67
A K R C K+ + EGC +GD C F H E R +V
Sbjct: 169 AYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESV 204
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFA-KGSCTFGDRCHFAHGSEELR 223
+KT+LCE+F KG C +G++C FAHG EL+
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 190 QSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEE 221
+SNN++TK C N++K G C +G RC F HG ++
Sbjct: 239 KSNNYRTKPCINWSKLGYCPYGKRCCFKHGDDK 271
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 20 APPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
AP P + K+ LC + CK+G+KC FAHG EL
Sbjct: 192 APLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNEL 234
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 195 KTKLCENFAKGSCTFGDRCHFAHGSEELRKSV 226
KT+LC + +G+C +G RC FAHG +ELR +
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELRPVI 415
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 32 AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 71
A K+ LCNK+ C +G +C FAHG EL RP + P Y+
Sbjct: 382 AAKTELCNKWERG-ACPYGARCRFAHGLQEL-RPVIRHPRYK 421
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAH 57
P K+ C + +A GC +G +CHF H
Sbjct: 418 PRYKTLPCQMFAAASGCPYGHRCHFRH 444
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 193 NFKTKLCENFAKGS-CTFGDRCHFAH 217
+KT C+ FA S C +G RCHF H
Sbjct: 419 RYKTLPCQMFAAASGCPYGHRCHFRH 444
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 30 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 64
P K+R+CNK+ C FG KCHFAHG EL R
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP------TVPSYEDPRA--MGGPMHGRMG 85
K++LC K+ A C + C+FAH EL RP V ++E+ R+ MG P
Sbjct: 93 KTKLCCKFR-AGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPT----V 147
Query: 86 GRLEPPPQSLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV 145
+E P + + ++A + S + + G + C + S V
Sbjct: 148 SVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESV 207
Query: 146 -----DPNLRNIELEGTFDQIKQASAMVRELIVNVGSGSGHSMKSNSSSQSNNFKTKLCE 200
+ G+ ++V G G S + +N+KT++C
Sbjct: 208 AISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICN 267
Query: 201 NFA-KGSCTFGDRCHFAHGSEELRK 224
+ G C FG +CHFAHG+ EL +
Sbjct: 268 KWEITGYCPFGAKCHFAHGAAELHR 292
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 194 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224
FKTKLC F G+C + C+FAH EELR+
Sbjct: 92 FKTKLCCKFRAGTCPYITNCNFAHTVEELRR 122
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 32 AVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 67
+ K R C K+ + EGC +G+ C F H E R +V
Sbjct: 172 SFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESV 207
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 191 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 223
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 191 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 223
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 191 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
S+ +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELR 223
+KT+LC F G C +G RCHF H +EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 192 NNFKTKLCENFAKG--SCTFGDRCHFAHGSEELRKSVI 227
+NFKT+LC A G C G RC FAHG +ELR S I
Sbjct: 272 HNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDI 309
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 191 SNNFKTKLCENFAK---GSCTFGDRCHFAHGSE 220
+N +KTKLC+NFA+ G C +G RC F H S+
Sbjct: 315 NNKYKTKLCKNFARGGSGVCPYGLRCEFVHPSD 347
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 26 DGSSPPAVKSRLCNKYNSA-EGCKFGDKCHFAHGEWELGRPTVPS 69
D P K+RLC + + C G +C FAHG EL +P+
Sbjct: 267 DSQLPHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPT 311
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFA-KGSCTFGDRCHFAHGSEELR 223
+KT+LCE+F KGSC +G +C FAHG EL+
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELK 200
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSE 220
NF+TK C N+ K G C +G RC F HG +
Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHGDD 235
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 15 PRNSGAPPSFPDGSSPPAVKSR------------LCNKYNSAEGCKFGDKCHFAHGEWEL 62
P+N + S + S+ P VKS+ LC + C +G KC FAHG EL
Sbjct: 140 PKNDASFSSEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGEL 199
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 194 FKTKLCENFAK-GSCTFGDRCHFAHGSEELRKSV 226
+KT++CE F G C F D C FAHG EELR S+
Sbjct: 57 YKTRVCETFVTSGRCMFEDGCTFAHGDEELRPSL 90
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV 67
K+R+C + ++ C F D C FAHG+ EL RP++
Sbjct: 58 KTRVCETFVTSGRCMFEDGCTFAHGDEEL-RPSL 90
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 191 SNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
++ +KT+LC F + G C +G++C FAHGS ELR
Sbjct: 133 TSRYKTELCRPFEEAGECKYGEKCQFAHGSHELR 166
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 21 PPSFPDGSSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
PP P +S K+ LC + A CK+G+KC FAHG EL
Sbjct: 126 PPQQPMNTS--RYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEE 221
+KT+ C F + G C +G RCHF H ++E
Sbjct: 174 YKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ C ++S C +G +CHF H E
Sbjct: 172 PKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus
GN=Hnrnpk PE=1 SV=1
Length = 463
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk
PE=1 SV=1
Length = 463
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK
PE=1 SV=1
Length = 463
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus
GN=HNRNPK PE=2 SV=1
Length = 463
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|Q5R5H8|HNRPK_PONAB Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|Q4R4M6|HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis
GN=HNRNPK PE=2 SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|Q3T0D0|HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 59 EWELGRPTVPSYEDPRAMGGPMHGRMGGRLEPPPQSLGAAASFGA-SATAKISIDAKLAG 117
EW++ +YE P+ G + GGR G+ G T +++I LAG
Sbjct: 356 EWQM------AYE-PQGGSGYDYSYAGGR--------GSYGDLGGPIITTQVTIPKDLAG 400
Query: 118 AIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVR 169
+IIGK G KQI +GA + I + R I + GT DQI+ A +++
Sbjct: 401 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 185 SNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
S S S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 118 SGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 157
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + + CK+G+KC FAHG EL
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
+KT+LC F G C +G RCHF H ++E R
Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 163 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE 193
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 71
K+ LCNK+ C +GD+C FAHG EL RP + P Y+
Sbjct: 260 KTELCNKWEETGDCPYGDQCQFAHGVTEL-RPVIRHPRYK 298
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
FKT+LC + + G C +GD+C FAHG ELR
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELR 289
>sp|Q5ZIQ3|HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus
GN=HNRNPK PE=2 SV=1
Length = 427
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 102 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQI 161
G T +++I LAG+IIGK G KQI +GA + I + R I + GT DQI
Sbjct: 349 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 408
Query: 162 KQASAMVR 169
+ A +++
Sbjct: 409 QNAQYLLQ 416
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
P K+R+CNK+ + C FG CHFAHG EL
Sbjct: 142 PNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFAKGSCTF-GDRCHFAHGSEELR 223
FKTKLC F G+C + CHFAH +EELR
Sbjct: 72 FKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 190 QSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEEL 222
+S N+KT++C + G C FG CHFAHG EL
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 184 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 92 KAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR 132
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + + CK+G+KC FAHG EL
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 225
+KT+LC F G C +G RCH H +EE R++
Sbjct: 140 YKTELCRTFHTIGFCPYGPRCHLIHNAEERRQA 172
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 172 IVNVGSGSGHSMKSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
+ + S++ + +KT+LC+ F + G C + D C +AHG +ELR
Sbjct: 77 LAQIDEAPATKRHSSAKDKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELR 129
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 173 VNVGSGSGHSMKSNSSSQSNNF----KTKLCENFAKGSCTFGDRCHFAH 217
+N S S + SNN + ++C NF +G+C +G RC F H
Sbjct: 160 INRSSSSASKHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFIH 208
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRP 65
K+RLC+ + C + D C +AHG+ EL P
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVP 131
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 71
K+ LCNK+ C +GD+C FAHG EL RP + P Y+
Sbjct: 270 KTELCNKWEETGACPYGDQCQFAHGVAEL-RPVIRHPRYK 308
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 194 FKTKLCENFAK-GSCTFGDRCHFAHGSEELRKSV 226
FKT+LC + + G+C +GD+C FAHG ELR +
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELRPVI 302
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 184 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 122 KAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR 162
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 225
+KT+LC F G C +G RCHF H +EE R++
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQA 202
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + + CK+G+KC FAHG EL
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHEL 161
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 168 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 184 KSNSSSQSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
K+ + S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 124 KAGAQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELR 164
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 194 FKTKLCENF-AKGSCTFGDRCHFAHGSEELRKS 225
+KT+LC F G C +G RCHF H +EE R++
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQA 204
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + CK+G+KC FAHG EL
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHEL 163
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVP-SYEDPRAM------GGPMHGR 83
P K+ LC +++ C +G +CHF H E R P + E P+ G P H
Sbjct: 170 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEE--RRQAPGAGERPKLHHSLSFSGFPNHSL 227
Query: 84 MGGRLE------PPPQSLGA 97
LE PPPQS G+
Sbjct: 228 DSPLLESPTSRTPPPQSSGS 247
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 190 QSNNFKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
S +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 150 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC + + CK+G+KC FAHG EL
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 187 SSSQSNNFKTKLCENF-AKGSCTFGDRCHFAHGSEELR 223
S ++ +KT+LC F G C +G RCHF H ++E R
Sbjct: 185 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERR 222
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC +++ C +G +CHF H E
Sbjct: 190 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE 220
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 180 GHSMKSNSSSQSNNFKTKLCENFAKG--SCTFGDRCHFAHGSEELRKS 225
G + S Q N+KT+LC A G C G RC FAHG +ELR +
Sbjct: 257 GFPIPETDSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRAT 304
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 191 SNNFKTKLCENFAKGS---CTFGDRCHFAHGSEELRKSV 226
+N +KTKLC+NFA+G C +G RC F H +++ +++
Sbjct: 312 NNKYKTKLCKNFARGGTGFCPYGLRCEFVHPTDKEFQNI 350
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 26 DGSSPPAVKSRLCNKYNSA-EGCKFGDKCHFAHGEWELGRPTVPS 69
D PP K+RLC + S + C G +C FAHG EL P+
Sbjct: 264 DSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDAPA 308
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 225
+KT+LC F++ G C +G +C FAHG ELR++
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQA 136
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 193 NFKTKLCENF-AKGSCTFGDRCHFAHGSEE 221
+KT+LC F +G C +G RCHF H E
Sbjct: 141 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC ++ + C++G KC FAHG EL
Sbjct: 105 KTELCRTFSESGRCRYGAKCQFAHGLGEL 133
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAH 57
P K+ LC+K+ C +G +CHF H
Sbjct: 140 PKYKTELCHKFYLQGRCPYGSRCHFIH 166
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 194 FKTKLCENFA-KGSCTFGDRCHFAHGSEELRK 224
+KT+ C+N+ G+C +G +C FAHG++EL++
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKE 358
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV-PSYEDPRAMGGPMHG 82
K+ C + + C++G KC FAHG EL P P Y+ R M+G
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYG 377
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 71
+K+ LCNK+ C +GD C FAHG EL RP + P Y+
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDEL-RPVIRHPRYK 272
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 194 FKTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
KT+LC + + G+C +GD C FAHG +ELR
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDELR 263
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTV--PSYE 71
K+ LCNK+ C +GD C FAHG EL RP + P Y+
Sbjct: 223 TKTELCNKWQETGTCPYGDHCQFAHGIKEL-RPVIRHPRYK 262
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 195 KTKLCENFAK-GSCTFGDRCHFAHGSEELR 223
KT+LC + + G+C +GD C FAHG +ELR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 194 FKTKLCENFAKG-SCTFGDRCHFAHGSEELRKSV 226
+KT++C G +C +G RCHF H E K V
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLV 294
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 90 PPPQSLGAAASFGA---SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-V 145
PPP + SFGA S T + I A GAIIGK G + KQ+ R GA + I + +
Sbjct: 391 PPPGAQAGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGI 450
Query: 146 DPNLRNIELEG 156
D R + + G
Sbjct: 451 DAKQRMVIISG 461
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 90 PPPQ---SLGAAASFGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 144
PP Q SLGA + ++ + + GAIIGK G + I + T +K+ I E
Sbjct: 177 PPRQGSPSLGARPKLQSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKE 234
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 225
+KT+LC F++ G C +G +C FAHG ELR++
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQA 134
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 188 SSQSNNFKTKLCENFA-KGSCTFGDRCHFAHGSEE 221
+S+ +KT+LC F +G C +G RCHF H E
Sbjct: 134 ASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC ++ + C++G KC FAHG EL
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 19/74 (25%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRM------ 84
P K+ LC+K+ C +G +CHF H PS ED A G P R
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHN---------PS-EDLAAPGHPHVLRQSISFSG 187
Query: 85 ---GGRLEPPPQSL 95
G R PPP SL
Sbjct: 188 LPSGRRTSPPPASL 201
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRK 224
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPT 66
K+ LC ++ + C++G KC FAHG EL +P+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQPS 135
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 189 SQSNNFKTKLCENFA-KGSCTFGDRCHFAHGSEE 221
S+ +KT+LC F +G C +G RCHF H E
Sbjct: 135 SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRAMGGPMHGRM------ 84
P K+ LC+K+ C +G +CHF H PS ED A G P R
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHN---------PS-EDLAAPGHPHVLRQSISFSG 187
Query: 85 ---GGRLEPPPQSLG 96
G R PPP SL
Sbjct: 188 LPSGRRTSPPPASLA 202
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 225
+KT+LC +++ G C +G +C FAHG ELR++
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELRQA 129
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC Y+ + C++G KC FAHG EL
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAHGPGEL 126
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 193 NFKTKLCENFA-KGSCTFGDRCHFAHGSEE 221
+KT+LC F +G C +G RCHF H E
Sbjct: 134 KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC+K+ C +G +CHF H E
Sbjct: 133 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 193 NFKTKLCENFAK-GSCTFGDRCHFAHGSEELRKS 225
+KT+LC +++ G C +G +C FAHG ELR++
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 128
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEWEL 62
K+ LC Y+ + C++G KC FAHG EL
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGEL 125
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 193 NFKTKLCENFA-KGSCTFGDRCHFAHGSEE 221
+KT+LC F +G C +G RCHF H E
Sbjct: 133 KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHGEWE 61
P K+ LC+K+ C +G +CHF H E
Sbjct: 132 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 157 TFDQIKQASAMVRELIVN-VGSGSGHSMKSNSSSQ---SNNFKTKLCENF-AKGSCTFGD 211
T++Q+K V+ ++ V HS K Q + +KT +C + +G C G
Sbjct: 375 TWEQLKDGLVAVKTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCRDMKQRGGCPRGA 434
Query: 212 RCHFAHGSEELRK 224
C FAH EEL K
Sbjct: 435 SCTFAHSQEELEK 447
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 192 NNFKTKLCENFAKGS-CTFGDRCHFAHGSEELRK 224
+ +KTKLC+ F G C F C FAHG EL K
Sbjct: 438 DKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGK 471
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 34 KSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 64
K++LC + S C F C FAHGE ELG+
Sbjct: 441 KTKLCKTFTSGGLCLFAANCRFAHGEVELGK 471
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 195 KTKLC-ENFAKG-SCTFGDRCHFAHGSEELRKSV 226
KTKLC E +++G C G+ C +AHG ++LR V
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVV 412
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 34 KSRLCNKYNS-AEGCKFGDKCHFAHGEWEL 62
K++LC +Y S GC G+ C +AHGE +L
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDL 408
>sp|O42254|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus
gallus GN=IGF2BP1 PE=1 SV=1
Length = 576
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 90 PPPQSLGAAASFGA-----SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 144
PPP S+ AA + + T + I A+ GAIIGK G + KQ+ R A + I E
Sbjct: 385 PPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE 444
Query: 145 V-DPNLRNIELEG 156
D +R + + G
Sbjct: 445 TPDSKVRMVVITG 457
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 75/189 (39%), Gaps = 33/189 (17%)
Query: 9 AHPPPPPRNSGAPP--SFPDGSSPPAVKSRLCNKYNSAEGCKFGDK-------CHFAHGE 59
A PPPP SGA P SF PP ++ A G G K FA
Sbjct: 382 AVPPPPSSVSGAAPYSSF----MPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASAS 437
Query: 60 WELGRPTVP-SYEDPRAMGGP------MHGRMGGRLEPPPQSLGAAASFGASATAK---- 108
++ P P S + GP GR+ G+L+ FG K
Sbjct: 438 IKIAPPETPDSKVRMVVITGPPEAQFKAQGRIYGKLK-------EENFFGPKEEVKLETH 490
Query: 109 ISIDAKLAGAIIGKNGVNSKQICRLTGAKLSI-RDHEVDPNLRNI-ELEGTFDQIKQASA 166
I + A AG +IGK G ++ LT A++ + RD D N + I ++ G F + A
Sbjct: 491 IRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKIIGHFYASQMAQR 550
Query: 167 MVRELIVNV 175
+R+++ V
Sbjct: 551 KIRDILAQV 559
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 117 GAIIGKNGVNSKQICRLTGAKLSIRDH---EVDPNLRNIELEGTFDQIKQASAMVRELI 172
G IIGK G K I + +GA++ ++ + DPN++ + GT QI A ++ E I
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSI-----RDHEVDPNLRNIELEGTF 158
+A +I I A AG +IGK G KQ+ G K+ + ++ D LR + G
Sbjct: 185 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLR---ITGDP 241
Query: 159 DQIKQASAMVRELIVNVG 176
+++QA MV ELI + G
Sbjct: 242 YKVQQAKEMVLELIRDQG 259
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 157 TFDQIKQASAMVRELIVN-VGSGSGHSMK---SNSSSQSNNFKTKLCENF-AKGSCTFGD 211
T++Q++ VR ++ V HS K Q + +KT +C + +G C G
Sbjct: 373 TWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCRDMKQRGGCPRGA 432
Query: 212 RCHFAHGSEELRK 224
C FAH EEL K
Sbjct: 433 SCTFAHSQEELEK 445
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 157 TFDQIKQASAMVRELIVN-VGSGSGHSMK---SNSSSQSNNFKTKLCENF-AKGSCTFGD 211
T++Q++ VR ++ V HS K Q + +KT +C + +G C G
Sbjct: 373 TWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCRDMKQRGGCPRGA 432
Query: 212 RCHFAHGSEELRK 224
C FAH EEL K
Sbjct: 433 SCTFAHSQEELEK 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,574,178
Number of Sequences: 539616
Number of extensions: 4145434
Number of successful extensions: 24319
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 22099
Number of HSP's gapped (non-prelim): 2111
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)