Query 027188
Match_columns 227
No_of_seqs 330 out of 800
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 1.3E-18 4.4E-23 126.7 3.8 36 29-64 6-41 (77)
2 1zzk_A Heterogeneous nuclear r 99.5 1.6E-14 5.4E-19 106.7 3.0 75 103-177 5-79 (82)
3 2hh3_A KH-type splicing regula 99.4 3.5E-14 1.2E-18 110.6 3.3 75 104-178 10-84 (106)
4 1wvn_A Poly(RC)-binding protei 99.4 2.9E-14 9.9E-19 105.2 2.7 74 102-175 3-76 (82)
5 2p2r_A Poly(RC)-binding protei 99.4 5.2E-14 1.8E-18 102.3 2.7 70 104-173 4-73 (76)
6 1j5k_A Heterogeneous nuclear r 99.4 6.7E-14 2.3E-18 104.9 2.9 74 104-177 13-86 (89)
7 1x4n_A FAR upstream element bi 99.4 1.7E-13 5.7E-18 103.5 4.3 74 104-177 14-87 (92)
8 2hh2_A KH-type splicing regula 99.4 1.8E-13 6.2E-18 106.1 3.7 71 106-176 8-81 (107)
9 1x4m_A FAR upstream element bi 99.3 1.7E-13 6E-18 103.7 1.8 73 104-176 14-88 (94)
10 2axy_A Poly(RC)-binding protei 99.3 2.5E-13 8.5E-18 98.5 2.4 67 105-173 5-71 (73)
11 1dtj_A RNA-binding neurooncolo 99.3 2.3E-13 7.9E-18 98.3 2.2 69 105-173 3-74 (76)
12 1ec6_A RNA-binding protein NOV 99.3 5.1E-13 1.8E-17 99.4 3.2 72 105-176 3-77 (87)
13 2opv_A KHSRP protein; KH domai 99.3 5.6E-13 1.9E-17 99.0 3.1 69 105-173 14-84 (85)
14 2dgr_A Ring finger and KH doma 99.3 8E-13 2.7E-17 98.9 3.8 72 103-177 8-79 (83)
15 1we8_A Tudor and KH domain con 99.2 2.7E-12 9.3E-17 98.8 2.8 71 104-174 14-86 (104)
16 2d9m_A Zinc finger CCCH-type d 99.2 1.3E-12 4.3E-17 95.8 0.4 33 192-224 16-48 (69)
17 2jvz_A KH type-splicing, FAR u 99.1 2.1E-11 7.3E-16 98.1 3.2 72 105-176 91-162 (164)
18 1j4w_A FUSE binding protein; s 99.1 1.9E-11 6.5E-16 100.2 2.8 73 104-176 2-74 (174)
19 2cte_A Vigilin; K homology typ 99.1 5.5E-11 1.9E-15 90.1 4.4 75 102-178 14-88 (94)
20 1j4w_A FUSE binding protein; s 99.1 2.2E-11 7.4E-16 99.8 2.1 69 104-172 103-174 (174)
21 2d9m_A Zinc finger CCCH-type d 99.1 1.2E-11 4.2E-16 90.6 0.2 36 28-64 13-48 (69)
22 1vig_A Vigilin; RNA-binding pr 99.1 2.1E-11 7.1E-16 88.0 1.3 66 104-171 4-69 (71)
23 2jvz_A KH type-splicing, FAR u 99.1 4.9E-11 1.7E-15 96.0 3.2 73 104-176 1-75 (164)
24 2anr_A Neuro-oncological ventr 99.1 4.7E-11 1.6E-15 98.0 3.0 70 104-173 103-174 (178)
25 3krm_A Insulin-like growth fac 99.1 5.1E-11 1.7E-15 96.3 2.9 74 104-177 84-159 (163)
26 3krm_A Insulin-like growth fac 99.0 9E-11 3.1E-15 94.9 3.7 72 105-176 3-75 (163)
27 2ctl_A Vigilin; K homology typ 99.0 1.2E-10 4.2E-15 88.9 4.1 74 104-177 16-90 (97)
28 2jzx_A Poly(RC)-binding protei 99.0 6.7E-11 2.3E-15 95.4 2.6 70 105-174 89-159 (160)
29 2qnd_A FMR1 protein; KH domain 99.0 7.6E-11 2.6E-15 95.5 2.4 70 106-175 68-143 (144)
30 2anr_A Neuro-oncological ventr 99.0 1.1E-10 3.8E-15 95.7 2.9 73 104-176 5-80 (178)
31 2ctk_A Vigilin; K homology typ 99.0 2.5E-10 8.7E-15 88.2 3.6 70 105-176 17-86 (104)
32 2ctm_A Vigilin; K homology typ 99.0 4.3E-10 1.5E-14 85.7 4.8 75 102-177 14-88 (95)
33 1m9o_A Tristetraproline; Cys3H 98.9 4.1E-10 1.4E-14 81.5 3.5 35 190-224 6-41 (77)
34 2jzx_A Poly(RC)-binding protei 98.9 3.5E-10 1.2E-14 91.1 2.3 69 105-175 5-73 (160)
35 2cqe_A KIAA1064 protein; CCCH 98.9 1.2E-09 4.1E-14 84.1 4.2 27 31-58 9-35 (98)
36 2d9n_A Cleavage and polyadenyl 98.7 1E-08 3.5E-13 75.2 4.0 28 30-58 5-32 (77)
37 2cpq_A FragIle X mental retard 98.6 3E-08 1E-12 75.9 4.1 65 101-170 11-77 (91)
38 2ctj_A Vigilin; K homology typ 98.6 3.9E-08 1.3E-12 75.0 4.5 76 100-177 12-88 (95)
39 2yqr_A KIAA0907 protein; struc 98.5 4.3E-08 1.5E-12 78.1 2.5 62 114-176 28-101 (119)
40 2ctf_A Vigilin; K homology typ 98.4 1.2E-07 4E-12 73.2 3.8 68 105-177 27-95 (102)
41 3d2q_A Muscleblind-like protei 98.4 8.5E-08 2.9E-12 69.2 2.3 30 194-224 40-69 (70)
42 2rhk_C Cleavage and polyadenyl 98.3 1.9E-07 6.6E-12 68.0 2.6 28 30-58 11-38 (72)
43 2e5s_A Otthump00000018578; ZF- 98.3 1.9E-07 6.6E-12 71.9 1.7 30 194-224 54-83 (98)
44 1k1g_A SF1-BO isoform; splicin 98.2 5E-07 1.7E-11 72.8 3.4 70 105-174 7-99 (131)
45 2d9n_A Cleavage and polyadenyl 98.2 6.8E-07 2.3E-11 65.5 2.4 35 190-224 4-38 (77)
46 2e3u_A PH-DIM2P, hypothetical 98.1 8.1E-07 2.8E-11 77.0 1.6 53 114-173 138-190 (219)
47 2cqe_A KIAA1064 protein; CCCH 97.9 4.1E-06 1.4E-10 64.2 2.2 27 192-218 9-35 (98)
48 2rhk_C Cleavage and polyadenyl 97.9 3.3E-06 1.1E-10 61.4 1.4 35 190-224 10-44 (72)
49 3n89_A Defective in GERM LINE 97.9 5.1E-06 1.8E-10 77.4 2.6 69 103-171 28-103 (376)
50 2bl5_A MGC83862 protein, quaki 97.8 2E-06 6.8E-11 70.3 -0.6 70 106-175 3-102 (140)
51 2e3u_A PH-DIM2P, hypothetical 97.8 5.5E-06 1.9E-10 71.7 2.1 63 105-172 34-101 (219)
52 1tua_A Hypothetical protein AP 97.7 9E-06 3.1E-10 69.3 1.4 53 114-173 107-159 (191)
53 2qnd_A FMR1 protein; KH domain 97.6 2.2E-05 7.4E-10 63.3 2.6 61 104-167 3-63 (144)
54 1tua_A Hypothetical protein AP 97.6 2.9E-05 9.9E-10 66.2 2.9 66 106-176 5-75 (191)
55 3d2n_A Muscleblind-like protei 97.4 5.9E-05 2E-09 56.4 2.2 27 31-58 5-32 (83)
56 3n89_A Defective in GERM LINE 97.3 7.5E-05 2.6E-09 69.5 2.6 69 104-172 185-259 (376)
57 3v69_A Protein filia; RNA-bind 97.2 0.00018 6.2E-09 58.9 3.6 68 105-173 56-123 (140)
58 3u1k_A Polyribonucleotide nucl 97.2 5.9E-05 2E-09 74.2 0.8 62 105-172 567-629 (630)
59 3d2q_A Muscleblind-like protei 97.2 9.5E-05 3.3E-09 53.1 1.4 29 194-222 4-33 (70)
60 2e5s_A Otthump00000018578; ZF- 96.9 0.00012 4E-09 56.2 -0.8 32 191-222 15-47 (98)
61 4aid_A Polyribonucleotide nucl 96.8 0.00031 1.1E-08 70.2 1.8 63 106-174 571-634 (726)
62 2rpp_A Muscleblind-like protei 96.6 0.00093 3.2E-08 50.6 2.3 26 31-57 13-39 (89)
63 3d2n_A Muscleblind-like protei 96.5 0.0014 4.7E-08 48.9 2.6 30 192-221 5-35 (83)
64 2fc6_A Nuclear, target of EGR1 96.0 0.0021 7.3E-08 44.1 1.5 28 193-220 17-45 (50)
65 2rpp_A Muscleblind-like protei 95.9 0.0042 1.4E-07 46.9 2.8 32 190-221 11-43 (89)
66 2fc6_A Nuclear, target of EGR1 95.3 0.0076 2.6E-07 41.4 2.0 28 32-59 17-44 (50)
67 3cdi_A Polynucleotide phosphor 94.1 0.0089 3E-07 59.7 0.0 62 105-172 560-622 (723)
68 1e3p_A Guanosine pentaphosphat 93.4 0.02 6.9E-07 57.4 1.1 61 106-172 599-660 (757)
69 3u1l_A PRE-mRNA-splicing facto 93.3 0.016 5.3E-07 50.6 0.2 23 197-219 71-93 (240)
70 2cxc_A NUSA; transcription ter 89.0 0.066 2.3E-06 43.6 -0.4 44 104-147 35-78 (144)
71 2asb_A Transcription elongatio 88.3 0.094 3.2E-06 46.4 0.1 40 105-144 184-223 (251)
72 2cxc_A NUSA; transcription ter 88.0 0.041 1.4E-06 44.8 -2.2 40 103-142 101-140 (144)
73 1k0r_A NUSA; two component arr 86.0 0.15 5.2E-06 47.3 0.1 41 104-144 306-346 (366)
74 1hh2_P NUSA, N utilization sub 84.0 0.19 6.4E-06 46.2 -0.3 40 104-143 302-341 (344)
75 3u1l_A PRE-mRNA-splicing facto 79.1 0.48 1.6E-05 41.1 0.6 22 36-58 71-92 (240)
76 3u9g_A Zinc finger CCCH-type a 62.4 2.3 8E-05 37.1 1.1 26 194-220 173-198 (229)
77 3v33_A Ribonuclease ZC3H12A; r 59.7 1.9 6.5E-05 37.4 0.0 25 195-221 191-215 (223)
78 2asb_A Transcription elongatio 57.9 2 6.8E-05 37.9 -0.2 34 114-147 126-160 (251)
79 3iev_A GTP-binding protein ERA 56.2 2.2 7.6E-05 37.0 -0.2 28 105-132 240-268 (308)
80 1k0r_A NUSA; two component arr 51.5 2.6 8.9E-05 39.0 -0.5 43 105-147 235-283 (366)
81 3u9g_A Zinc finger CCCH-type a 48.5 5.7 0.0002 34.7 1.2 24 197-220 90-117 (229)
82 1wf3_A GTP-binding protein; GT 47.6 3.5 0.00012 35.9 -0.3 26 107-132 232-258 (301)
83 3v33_A Ribonuclease ZC3H12A; r 46.1 4.3 0.00015 35.2 0.0 25 33-60 190-214 (223)
84 1wh9_A 40S ribosomal protein S 40.9 3.8 0.00013 30.6 -1.0 28 105-132 35-62 (92)
85 2pt7_G HP1451, hypothetical pr 35.2 5.2 0.00018 32.6 -1.1 30 105-134 33-62 (152)
86 3r8n_C 30S ribosomal protein S 26.5 19 0.00064 30.7 0.8 36 106-141 62-101 (206)
87 3u5c_D RP13, YS3, 40S ribosoma 23.4 17 0.00058 31.8 -0.0 27 106-132 45-71 (240)
88 1ega_A Protein (GTP-binding pr 22.5 16 0.00055 31.4 -0.3 26 107-132 233-259 (301)
89 3iz6_B 40S ribosomal protein S 22.2 17 0.00058 31.5 -0.3 27 106-132 45-71 (227)
90 3i1m_C 30S ribosomal protein S 21.0 21 0.00071 31.1 0.0 36 106-141 63-102 (233)
91 1hh2_P NUSA, N utilization sub 20.4 26 0.0009 31.9 0.6 34 114-147 245-279 (344)
92 3j20_C 30S ribosomal protein S 20.3 16 0.00055 31.2 -0.8 30 106-135 41-74 (210)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.73 E-value=1.3e-18 Score=126.67 Aligned_cols=36 Identities=39% Similarity=0.875 Sum_probs=32.4
Q ss_pred CCCCCcccccccccCCCCCCCCCCCccCCCCcccCC
Q 027188 29 SPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 64 (227)
Q Consensus 29 ~~~~yKT~lC~~f~~~g~C~yG~~C~FAHg~~ELr~ 64 (227)
++++|||+||++|..+|.|+||++|+|+|+..||+.
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 357999999999988899999999999999888763
No 2
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.46 E-value=1.6e-14 Score=106.71 Aligned_cols=75 Identities=32% Similarity=0.441 Sum_probs=68.5
Q ss_pred CccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 103 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 103 ~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
...+.+|.||.+++|.||||+|.+||+|++.||++|.|.+...+..+|.|.|.|+.++++.|..||.+++...+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 457889999999999999999999999999999999998765566789999999999999999999999987654
No 3
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=110.61 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=66.2
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSG 178 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~~ 178 (227)
..+.+|.||.+++|.||||+|.+||+|++.||++|.|.+.+.+..+|.|.|+|+.++++.|..||.+++......
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 468899999999999999999999999999999999987655556899999999999999999999999887753
No 4
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=2.9e-14 Score=105.15 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=66.2
Q ss_pred CCccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhc
Q 027188 102 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNV 175 (227)
Q Consensus 102 g~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~ 175 (227)
|.+.+.+|.||.+++|.||||||.+|++|++.||++|.|.+...+..+|.|.|.|++++++.|..||.+++...
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999998655667899999999999999999999987544
No 5
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.41 E-value=5.2e-14 Score=102.28 Aligned_cols=70 Identities=21% Similarity=0.433 Sum_probs=64.9
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
+.+.+|.||.+++|.||||||.+|++|++.||++|.|.+...+..+|.|.|.|++++++.|..||.+++.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999986566678999999999999999999999874
No 6
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.41 E-value=6.7e-14 Score=104.94 Aligned_cols=74 Identities=32% Similarity=0.445 Sum_probs=67.5
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
..+.+|.||.+++|.||||+|.+||+|++.||++|.|.+...+..+|.|.|+|+.++++.|..||.+++...+.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 57889999999999999999999999999999999998765566789999999999999999999999887653
No 7
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=1.7e-13 Score=103.48 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=67.9
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
+.+.+|.||.+++|+||||+|.+||+|++.||++|.|.+...+..+|.|.|.|+.++++.|..||.+++.....
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999865566789999999999999999999999987654
No 8
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=106.15 Aligned_cols=71 Identities=31% Similarity=0.416 Sum_probs=64.3
Q ss_pred ceeeehhhhhhhhhhccCCCcccccccccCCceeecccC---CCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e---s~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
+.+|.||.+++|+||||+|.+||+|++.|||+|.|.+.. ++..+|.|.|.|+.++++.|..||.+++....
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999998753 34568999999999999999999999876543
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=1.7e-13 Score=103.73 Aligned_cols=73 Identities=32% Similarity=0.413 Sum_probs=66.0
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCC--CCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV--DPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es--~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
..+.+|.||++++|.||||+|.+||+|++.||++|.|.+... +..+|.|.|+|++++++.|..||++++...+
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred cEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 468999999999999999999999999999999999987653 3468999999999999999999999987654
No 10
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.34 E-value=2.5e-13 Score=98.53 Aligned_cols=67 Identities=30% Similarity=0.421 Sum_probs=62.1
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
.+.+|.||.+++|.||||||.+||+|++.||++|.|.+.+ ..+|.|.|.|+++++..|..||.+++.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN--CPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC--CSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC--CCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999863 458999999999999999999999875
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=2.3e-13 Score=98.35 Aligned_cols=69 Identities=22% Similarity=0.399 Sum_probs=61.9
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccC---CCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e---s~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
.|.+|.||.+++|.||||||.+|++|++.||++|.|.+.. .+..+|.|.|.|++++++.|..||.+++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999998642 34557999999999999999999998763
No 12
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=5.1e-13 Score=99.42 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=64.4
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccC---CCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e---s~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
.+.+|.||.+++|.||||||.+|++|++.||++|.|.+.. .+..+|.|.|.|++++++.|..||.+++....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999998743 34567999999999999999999999887543
No 13
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.32 E-value=5.6e-13 Score=98.96 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=62.8
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCC--CCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV--DPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es--~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
.+.+|.||.+++|.||||||.+||+|++.||++|.|.+.+. ...+|.|.|.|++++++.|..||.+++.
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999987654 4568899999999999999999998763
No 14
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=8e-13 Score=98.91 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=63.2
Q ss_pred CccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 103 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 103 ~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
...+.+|.||.+++|+||||+|.+||+|++.||++|.|...+. ++.|.|+|+.++++.|..||.+++.....
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~---~~~v~ItG~~e~v~~A~~~I~~~i~~r~~ 79 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK---EPVFAVTGMPENVDRAREEIEAHITLRSG 79 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS---CCEEEEEECTTTHHHHHHHHHHHHHSCCS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCC---CCeEEEEcCHHHHHHHHHHHHHHHhcccC
Confidence 3578899999999999999999999999999999999985432 47899999999999999999997664443
No 15
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.23 E-value=2.7e-12 Score=98.78 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=63.3
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCC--CcccccccccCHHHHHHHHHHHHHHHHh
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVD--PNLRNIELEGTFDQIKQASAMVRELIVN 174 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~--~~~r~i~ieGtfeqI~~As~mV~elI~~ 174 (227)
..+.+|.||.+++|.||||||.+||+|++.||++|.|.+.... ..+|.|.|.|+.++++.|..||.+++..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999875432 3579999999999999999999998853
No 16
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-12 Score=95.78 Aligned_cols=33 Identities=33% Similarity=0.823 Sum_probs=30.1
Q ss_pred CccccccccccccccCCCCCCCcccCCcccccc
Q 027188 192 NNFKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 192 ~~~KTklC~~f~~G~C~~G~~C~FAHg~~ELr~ 224 (227)
+..|++||++|.+|.|+||++|+||||++|||.
T Consensus 16 P~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 16 PTGYFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CCCCcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 345779999999999999999999999999986
No 17
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=98.10 Aligned_cols=72 Identities=15% Similarity=0.333 Sum_probs=65.2
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
.+.+|.||.+++|.||||+|.+|++|+..||++|.|.+...+..+|.|.|.|++++++.|..+|.+++....
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999999999999999999999876655567999999999999999999999987654
No 18
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.11 E-value=1.9e-11 Score=100.16 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=66.4
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
+.+.+|.||.+++|.||||+|.+||+|++.||++|.|.+...+..+|.|.|.|+.++++.|..+|.+++....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999865545668999999999999999999999998765
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=5.5e-11 Score=90.05 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=65.7
Q ss_pred CCccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCCC
Q 027188 102 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGSG 178 (227)
Q Consensus 102 g~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~~ 178 (227)
....+.+|.||.+++|.||||||.+||+|...||++|.|.+.+. ..+.|.|.|+.++++.|..||.+++......
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--PSNQIKITGTKEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--SCCEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--CCCeEEEEECHHHHHHHHHHHHHHhhccccc
Confidence 34568999999999999999999999999999999999986432 2478999999999999999999998877654
No 20
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.09 E-value=2.2e-11 Score=99.84 Aligned_cols=69 Identities=29% Similarity=0.481 Sum_probs=61.9
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC---CCCcccccccccCHHHHHHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELI 172 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e---s~~~~r~i~ieGtfeqI~~As~mV~elI 172 (227)
..+.+|.||.+++|.||||+|.+||+|++.||++|.|.+.. .+.++|.|.|.|+.++++.|..||.++|
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 35889999999999999999999999999999999998753 3466899999999999999999999864
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-11 Score=90.55 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=31.2
Q ss_pred CCCCCCcccccccccCCCCCCCCCCCccCCCCcccCC
Q 027188 28 SSPPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGR 64 (227)
Q Consensus 28 ~~~~~yKT~lC~~f~~~g~C~yG~~C~FAHg~~ELr~ 64 (227)
.+.+..|++||++| .+|.|+||++|+||||++|||.
T Consensus 13 ~R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 13 HRFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred ccCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence 34455688999999 5689999999999999999985
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.08 E-value=2.1e-11 Score=88.01 Aligned_cols=66 Identities=27% Similarity=0.328 Sum_probs=59.8
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVREL 171 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~el 171 (227)
.++.+|.||.+++|.||||||.+|++|...||++|.|.+.+. +.|.|.|.|+.+.++.|..++.++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--KSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--SSEEEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--cccEEEEEcCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999987543 568999999999999999999875
No 23
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.07 E-value=4.9e-11 Score=95.97 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=64.4
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC--CCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE--VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e--s~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
+++.+|.||.+++|.||||+|.+||+|++.||++|.|.+.. .+..+|.|.|.|++++++.|..+|.+++....
T Consensus 1 ~~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 1 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp CEEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS
T ss_pred CeEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999999999999999999997643 24557899999999999999999999876544
No 24
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.06 E-value=4.7e-11 Score=97.98 Aligned_cols=70 Identities=26% Similarity=0.390 Sum_probs=62.8
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC--CCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE--VDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e--s~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
..+.+|.||.+++|.||||+|.+||+|++.||++|.|.+.. .+..+|.|.|.|+.++++.|..||.+++.
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQ 174 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998754 24467999999999999999999999875
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.05 E-value=5.1e-11 Score=96.34 Aligned_cols=74 Identities=24% Similarity=0.404 Sum_probs=64.6
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC-CCCc-ccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-VDPN-LRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e-s~~~-~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
+.+++|.||.+++|.||||+|.+|++|+..||++|.|.+.. .+.+ .+.|.|.|++++++.|..||.+++..+..
T Consensus 84 ~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 84 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999999999999999999999999999997654 2333 34899999999999999999999987764
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.04 E-value=9e-11 Score=94.88 Aligned_cols=72 Identities=26% Similarity=0.372 Sum_probs=65.7
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccC-CCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE-VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e-s~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
.|.+|.||.+++|+||||+|.+||+|+..||++|.|.+.+ ++..+|.|.|.|+++++..|..+|.+++....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999998754 46778999999999999999999999887664
No 27
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=1.2e-10 Score=88.90 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=65.2
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCC-CCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEV-DPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es-~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
+.+.+|.||.+++|.||||||.+|++|+..||++|.|.+.+. +..+|.|.|.|+.+++..|..+|..++..+..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999987552 23578999999999999999999998876553
No 28
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=6.7e-11 Score=95.36 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=63.0
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeeccc-CCCCcccccccccCHHHHHHHHHHHHHHHHh
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH-EVDPNLRNIELEGTFDQIKQASAMVRELIVN 174 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~-es~~~~r~i~ieGtfeqI~~As~mV~elI~~ 174 (227)
.+.+|.||.+++|.||||+|.+|++|++.||++|.|.+. ..+..++.|.|.|++++++.|..+|.+++..
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999753 2455689999999999999999999998753
No 29
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.02 E-value=7.6e-11 Score=95.55 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=59.8
Q ss_pred ceeeehhhhhhhhhhccCCCcccccccccCC-ceeecccC-CC-C-cc--cccccccCHHHHHHHHHHHHHHHHhc
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICRLTGA-KLSIRDHE-VD-P-NL--RNIELEGTFDQIKQASAMVRELIVNV 175 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~~TGa-klsI~~~e-s~-~-~~--r~i~ieGtfeqI~~As~mV~elI~~~ 175 (227)
.++|.||.+++|+||||+|.||++|+++||+ +|.|.+.. .+ + ++ +.|.|.|+++++++|..|+.+++.++
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3889999999999999999999999999997 89998543 21 1 22 35899999999999999999998765
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.00 E-value=1.1e-10 Score=95.73 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=65.0
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC---CCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE---VDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e---s~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
..+.+|.||.+++|.||||+|.+||+|++.||++|.|.+.+ .+..+|.|.|.|+.++++.|..+|.+++....
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 46889999999999999999999999999999999998643 34568999999999999999999999886543
No 31
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=2.5e-10 Score=88.25 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=62.6
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~ 176 (227)
.+.+|.||.+++|.|||+||.+|++|...||++|.|.+.+. +.+.|.|.|+.++++.|..||.+++....
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 68899999999999999999999999999999999987654 34689999999999999999998876543
No 32
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=4.3e-10 Score=85.68 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=65.9
Q ss_pred CCccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 102 GASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 102 g~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
....|.+|.||.+++|.|||+||.+|++|...||++|.|-+.++ .+.+.|.|.|+.++++.|..++..++.....
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-PDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-SCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-CCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999977543 3467899999999999999999998876553
No 33
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.94 E-value=4.1e-10 Score=81.47 Aligned_cols=35 Identities=46% Similarity=1.099 Sum_probs=32.4
Q ss_pred CCCccccccccccc-cccCCCCCCCcccCCcccccc
Q 027188 190 QSNNFKTKLCENFA-KGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 190 ~~~~~KTklC~~f~-~G~C~~G~~C~FAHg~~ELr~ 224 (227)
...+|||+||++|. +|.|+||++|+|||+.+|||.
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 45799999999996 899999999999999999986
No 34
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=3.5e-10 Score=91.11 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=62.5
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhc
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNV 175 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~ 175 (227)
.+.+|.||.+++|.||||+|.+||+|++.||++|.|.+.+ ..+|.|.|.|+.++++.|..+|.+++...
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~~r~v~I~G~~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN--CPERIITLAGPTNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCT--TTEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCC--CCceEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999998753 45789999999999999999998887653
No 35
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.87 E-value=1.2e-09 Score=84.07 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=24.5
Q ss_pred CCCcccccccccCCCCCCCCCCCccCCC
Q 027188 31 PAVKSRLCNKYNSAEGCKFGDKCHFAHG 58 (227)
Q Consensus 31 ~~yKT~lC~~f~~~g~C~yG~~C~FAHg 58 (227)
..+|+.+|++|. .|.|.+|++|.|+|.
T Consensus 9 ~~~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 9 LPKKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp CSCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCCCccCcccc-cCcCCCCCCCCCCCC
Confidence 458999999995 799999999999995
No 36
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1e-08 Score=75.24 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCCCCCCCCccCCC
Q 027188 30 PPAVKSRLCNKYNSAEGCKFGDKCHFAHG 58 (227)
Q Consensus 30 ~~~yKT~lC~~f~~~g~C~yG~~C~FAHg 58 (227)
...+|+.+|++|.. |.|.+|+.|.|+|.
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLHE 32 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBCS
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCccc
Confidence 46789999999998 99999999999994
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.59 E-value=3e-08 Score=75.85 Aligned_cols=65 Identities=20% Similarity=0.396 Sum_probs=56.7
Q ss_pred cCCccceeeehhhhhhhhhhccCCCcccccccccCCc-eeecccCCCCccccccccc-CHHHHHHHHHHHHH
Q 027188 101 FGASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAK-LSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRE 170 (227)
Q Consensus 101 fg~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGak-lsI~~~es~~~~r~i~ieG-tfeqI~~As~mV~e 170 (227)
+-.+....|.||.++.|.|||+||.+|++|++.||++ |.|.|. +..|.|.| +.+.++.|..|+..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-----dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED-----TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-----CCEEEEEECCHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999999998 999652 26788999 99999999888765
No 38
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=3.9e-08 Score=75.01 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=66.8
Q ss_pred ccCCccceeeehhhhhhhhhhccCCCccccccccc-CCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 100 SFGASATAKISIDAKLAGAIIGKNGVNSKQICRLT-GAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 100 ~fg~s~t~kisV~as~~G~IIGKgG~nikqI~~~T-GaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
......|..|.||..+.+.|||+||.+|++|...| |++|.|-+.++ +.+.|.|.|..+++..|..++.+++.....
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~--~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS--GSDTVVIRGPSSDVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT--TCCEEEEESCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhhhh
Confidence 45556799999999999999999999999999999 99999977543 356899999999999999999999887663
No 39
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=4.3e-08 Score=78.07 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=51.5
Q ss_pred hhhhhhhccCCCcccccccccCCceeecccCCC-----------Ccccccccc-cCHHHHHHHHHHHHHHHHhcC
Q 027188 114 KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVD-----------PNLRNIELE-GTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 114 s~~G~IIGKgG~nikqI~~~TGaklsI~~~es~-----------~~~r~i~ie-GtfeqI~~As~mV~elI~~~~ 176 (227)
+++|.|||++|.++|+|...||+||.|+..+|. ..+ .|.|+ .+.+++++|..||++++..++
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l-~V~I~a~~~e~i~~A~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPM-YIYISHPKPEGLAAAKKLCENLLQTVH 101 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBC-EEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCc-EEEEEeCCHHHHHHHHHHHHHHhhchH
Confidence 489999999999999999999999999976542 223 34454 689999999999999998765
No 40
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=1.2e-07 Score=73.16 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=60.1
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccc-cCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHHhcCC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRL-TGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIVNVGS 177 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~-TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~~~~~ 177 (227)
.|.+|.||..+.+.||||+|.||++|+.. +++.+.|-+. .+.|+|+|+.+++..|...+..++..+..
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~-----~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG-----EDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS-----SCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC-----CCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999995 6888887762 35899999999999999999888876654
No 41
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.41 E-value=8.5e-08 Score=69.21 Aligned_cols=30 Identities=23% Similarity=0.682 Sum_probs=27.4
Q ss_pred cccccccccccccCCCCCCCcccCCcccccc
Q 027188 194 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 194 ~KTklC~~f~~G~C~~G~~C~FAHg~~ELr~ 224 (227)
.++.+|.+|.+|.|..+ +|.|+|...+|+.
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence 46788999999999999 9999999999975
No 42
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=67.97 Aligned_cols=28 Identities=32% Similarity=0.676 Sum_probs=25.3
Q ss_pred CCCCcccccccccCCCCCCCCCCCccCCC
Q 027188 30 PPAVKSRLCNKYNSAEGCKFGDKCHFAHG 58 (227)
Q Consensus 30 ~~~yKT~lC~~f~~~g~C~yG~~C~FAHg 58 (227)
...+|+.+|++|.. |.|.+|+.|.|+|.
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHE 38 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCS
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCccc
Confidence 46789999999988 99999999999994
No 43
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.9e-07 Score=71.88 Aligned_cols=30 Identities=23% Similarity=0.659 Sum_probs=26.5
Q ss_pred cccccccccccccCCCCCCCcccCCcccccc
Q 027188 194 FKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 194 ~KTklC~~f~~G~C~~G~~C~FAHg~~ELr~ 224 (227)
.++.+|.+|.+|.|.++ +|+|.|...+|+.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred CccccchhhccCCCCCC-CcCccCChHHHHH
Confidence 45678999999999999 9999999988864
No 44
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.24 E-value=5e-07 Score=72.75 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=56.3
Q ss_pred cceeeehhhh------hhhhhhccCCCcccccccccCCceeecccCCCCc----------------cccccccc-CHHHH
Q 027188 105 ATAKISIDAK------LAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPN----------------LRNIELEG-TFDQI 161 (227)
Q Consensus 105 ~t~kisV~as------~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~----------------~r~i~ieG-tfeqI 161 (227)
.+.||.||.. .+|.|||.+|.++|+|...||++|.|++.+|... .--|.|++ +.+.+
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 4667778766 9999999999999999999999999998654110 12445555 78999
Q ss_pred HHHHHHHHHHHHh
Q 027188 162 KQASAMVRELIVN 174 (227)
Q Consensus 162 ~~As~mV~elI~~ 174 (227)
+.|..+|+.++..
T Consensus 87 ~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 87 KKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 45
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.8e-07 Score=65.46 Aligned_cols=35 Identities=31% Similarity=0.674 Sum_probs=30.0
Q ss_pred CCCccccccccccccccCCCCCCCcccCCcccccc
Q 027188 190 QSNNFKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 190 ~~~~~KTklC~~f~~G~C~~G~~C~FAHg~~ELr~ 224 (227)
....+|+.+|++|+.|.|.+|++|.|+|..++.+.
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~ 38 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKM 38 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTS
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCccccccCcC
Confidence 34678999999999999999999999998876544
No 46
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.08 E-value=8.1e-07 Score=76.98 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=49.1
Q ss_pred hhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 114 KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 114 s~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
..+|.||||+|.++|.|..+||++|.|.+ +.|.|.|+|++++.|..+|.++|.
T Consensus 138 r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i~~A~~~i~~li~ 190 (219)
T 2e3u_A 138 RVRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQIEIAKTAIEKLAR 190 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hhhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999999975 469999999999999999999883
No 47
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.89 E-value=4.1e-06 Score=64.22 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=23.9
Q ss_pred CccccccccccccccCCCCCCCcccCC
Q 027188 192 NNFKTKLCENFAKGSCTFGDRCHFAHG 218 (227)
Q Consensus 192 ~~~KTklC~~f~~G~C~~G~~C~FAHg 218 (227)
..+||.+|++|.+|.|++|++|+|+|.
T Consensus 9 ~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 9 LPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCCccCcccccCcCCCCCCCCCCCC
Confidence 347999999999999999999999997
No 48
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.87 E-value=3.3e-06 Score=61.42 Aligned_cols=35 Identities=29% Similarity=0.660 Sum_probs=29.6
Q ss_pred CCCccccccccccccccCCCCCCCcccCCcccccc
Q 027188 190 QSNNFKTKLCENFAKGSCTFGDRCHFAHGSEELRK 224 (227)
Q Consensus 190 ~~~~~KTklC~~f~~G~C~~G~~C~FAHg~~ELr~ 224 (227)
.....|+.+|++|+.|.|.+|++|.|+|..+..+.
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~ 44 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKM 44 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSC
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCccccccccC
Confidence 45678999999999999999999999998765443
No 49
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.85 E-value=5.1e-06 Score=77.37 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=59.3
Q ss_pred CccceeeehhhhhhhhhhccCC--CcccccccccCCceeecccC---CC--CcccccccccCHHHHHHHHHHHHHH
Q 027188 103 ASATAKISIDAKLAGAIIGKNG--VNSKQICRLTGAKLSIRDHE---VD--PNLRNIELEGTFDQIKQASAMVREL 171 (227)
Q Consensus 103 ~s~t~kisV~as~~G~IIGKgG--~nikqI~~~TGaklsI~~~e---s~--~~~r~i~ieGtfeqI~~As~mV~el 171 (227)
...|.++.|+..+.+.|||||| .||++|.+.||++|.+-|.+ ++ ..-..|+|+|..+.++.|..+++++
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 3578999999999999999999 99999999999999997654 11 2234799999999999999998874
No 50
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.82 E-value=2e-06 Score=70.32 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=51.8
Q ss_pred ceeeehhh------hhhhhhhccCCCcccccccccCCceeecccCCCCc-----------------c-ccccccc-CH--
Q 027188 106 TAKISIDA------KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPN-----------------L-RNIELEG-TF-- 158 (227)
Q Consensus 106 t~kisV~a------s~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~-----------------~-r~i~ieG-tf-- 158 (227)
+.||.||- +.+|.|||.+|.++|+|...||+||.|+..+|.-. + =-|.|++ +.
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34555553 34999999999999999999999999998775211 0 0344665 33
Q ss_pred ---HHHHHHHHHHHHHHHhc
Q 027188 159 ---DQIKQASAMVRELIVNV 175 (227)
Q Consensus 159 ---eqI~~As~mV~elI~~~ 175 (227)
+.++.|..+|+.++.+.
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHHCCCC
Confidence 38999999999988543
No 51
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.82 E-value=5.5e-06 Score=71.74 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=53.8
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCccccccc-----ccCHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIEL-----EGTFDQIKQASAMVRELI 172 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~i-----eGtfeqI~~As~mV~elI 172 (227)
-+.+|.||...+|.|||+||.+|++|...||++|.|...+ +.|+| +|+++.++.|..||..+.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~-----g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSET-----GEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTT-----CEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCC-----CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999997322 34444 556899999999999976
No 52
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.69 E-value=9e-06 Score=69.30 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=48.8
Q ss_pred hhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 114 KLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 114 s~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
...|.||||+|.|++.|..+||+.|.|.+. .|.|.|+|++|+.|...|..++.
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------EVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------EEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------EEEEEeChHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999863 68999999999999999999884
No 53
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.62 E-value=2.2e-05 Score=63.33 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=46.9
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAM 167 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~m 167 (227)
+.+.++.|+...+|++|||+|.+|++|.+.+| +.|.+...|+ .+.+..-++++.++.|..+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~-~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDEDT-CTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETTT-TEEEEEESSHHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCCc-hheeeccCCHHHHHHHHHh
Confidence 45789999999999999999999999999999 5555433333 3455556689999887543
No 54
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.58 E-value=2.9e-05 Score=66.16 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=56.3
Q ss_pred ceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccc-----cCHHHHHHHHHHHHHHHHhcC
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELE-----GTFDQIKQASAMVRELIVNVG 176 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ie-----GtfeqI~~As~mV~elI~~~~ 176 (227)
..+|.||..-+|.||||+|..++.|.+.+|+++.|... ++.|++. |+++.++.|..||..+..-++
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE-----NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT-----TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999999999653 3555555 999999999999988765443
No 55
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.39 E-value=5.9e-05 Score=56.39 Aligned_cols=27 Identities=26% Similarity=0.656 Sum_probs=23.9
Q ss_pred CCCcccccccccCCCCCCCCC-CCccCCC
Q 027188 31 PAVKSRLCNKYNSAEGCKFGD-KCHFAHG 58 (227)
Q Consensus 31 ~~yKT~lC~~f~~~g~C~yG~-~C~FAHg 58 (227)
...|...|+.|.. |.|..|+ .|.|+|.
T Consensus 5 ~~~~~~VCr~Flr-G~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 5 KWLTLEVCREFQR-GTCSRPDTECKFAHP 32 (83)
T ss_dssp GGGEEEBCTTGGG-TCCCSCTTTCSSBCC
T ss_pred ccccchhcHHHhc-CCCCCCCCCCCCcCC
Confidence 4567889999998 9999997 9999993
No 56
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.33 E-value=7.5e-05 Score=69.54 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=55.3
Q ss_pred ccceeeehhhhhhhhhhccCCCcc--cccccccCCceeecccCC--C--CcccccccccCHHHHHHHHHHHHHHH
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNS--KQICRLTGAKLSIRDHEV--D--PNLRNIELEGTFDQIKQASAMVRELI 172 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~ni--kqI~~~TGaklsI~~~es--~--~~~r~i~ieGtfeqI~~As~mV~elI 172 (227)
+.+.+|.|+..+...||||+|.|+ ++|+..||+.|.+=+.++ + .+...|.|+|+.+++..|...+.+++
T Consensus 185 ~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 185 NFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp CEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred ceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 457789999999999999999665 999999999999865432 1 12347999999999999999998854
No 57
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.24 E-value=0.00018 Score=58.89 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=59.3
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccccCHHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEGTFDQIKQASAMVRELIV 173 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieGtfeqI~~As~mV~elI~ 173 (227)
+..-+.|++.++++|||++|..|+.|...|.+.|.|..-+++ ++--|.|.|++.-.+.+..|+..+..
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~-g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE-RRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT-SCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCC-CcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999865553 67789999999999999999976653
No 58
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.24 E-value=5.9e-05 Score=74.21 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=51.4
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCccccccccc-CHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELEG-TFDQIKQASAMVRELI 172 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ieG-tfeqI~~As~mV~elI 172 (227)
-...|.||.+++|.|||+||.+||+|...||++|.|.|.+ .|.|.+ +.+.++.|..||++++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G------~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEE------TFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSS------EEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCCc------EEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999998643 566666 4678889988887643
No 59
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.20 E-value=9.5e-05 Score=53.06 Aligned_cols=29 Identities=28% Similarity=0.852 Sum_probs=25.6
Q ss_pred cccccccccccccCCCCC-CCcccCCcccc
Q 027188 194 FKTKLCENFAKGSCTFGD-RCHFAHGSEEL 222 (227)
Q Consensus 194 ~KTklC~~f~~G~C~~G~-~C~FAHg~~EL 222 (227)
.|.++|++|++|.|..|+ .|.|+|..+++
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~ 33 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPADST 33 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCTTS
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCcccc
Confidence 467899999999999999 59999988765
No 60
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00012 Score=56.24 Aligned_cols=32 Identities=31% Similarity=0.785 Sum_probs=28.4
Q ss_pred CCccccccccccccccCCCCC-CCcccCCcccc
Q 027188 191 SNNFKTKLCENFAKGSCTFGD-RCHFAHGSEEL 222 (227)
Q Consensus 191 ~~~~KTklC~~f~~G~C~~G~-~C~FAHg~~EL 222 (227)
....|.++|++|+.|.|..|| .|.|+|..+++
T Consensus 15 ~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 15 LRTDKLEVCREFQRGNCARGETDCRFAHPADST 47 (98)
T ss_dssp CCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCC
T ss_pred cChhhhhhhHHHhcCcCCCCCCCCCCcCCchhc
Confidence 356788999999999999999 89999998765
No 61
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.83 E-value=0.00031 Score=70.19 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=10.3
Q ss_pred ceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccc-cCHHHHHHHHHHHHHHHHh
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELE-GTFDQIKQASAMVRELIVN 174 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ie-GtfeqI~~As~mV~elI~~ 174 (227)
...|.||.++.|.|||+||.+||+|...||++|.|.|.+ .|.|. .+.+.++.|..++..++..
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG------~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDG------VVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECCc------eEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 567889999999999999999999999999999998743 33443 4688888898888877653
No 62
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.57 E-value=0.00093 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=23.0
Q ss_pred CCCcccccccccCCCCCCCCC-CCccCC
Q 027188 31 PAVKSRLCNKYNSAEGCKFGD-KCHFAH 57 (227)
Q Consensus 31 ~~yKT~lC~~f~~~g~C~yG~-~C~FAH 57 (227)
...|.+.|+.|.. |.|..++ .|.|+|
T Consensus 13 ~~~~~~VCrdFlr-G~C~r~d~~CrfsH 39 (89)
T 2rpp_A 13 KWLTLEVCRQFQR-GTCSRSDEECKFAH 39 (89)
T ss_dssp SSSEECBCHHHHH-TCCCCCTTTSSSBC
T ss_pred CcchhhhchHHhc-CCCCCCCCCCCCcC
Confidence 3456789999998 9999998 999999
No 63
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=48.92 Aligned_cols=30 Identities=33% Similarity=0.824 Sum_probs=23.9
Q ss_pred CccccccccccccccCCCCC-CCcccCCccc
Q 027188 192 NNFKTKLCENFAKGSCTFGD-RCHFAHGSEE 221 (227)
Q Consensus 192 ~~~KTklC~~f~~G~C~~G~-~C~FAHg~~E 221 (227)
...|-.+|+.|+.|.|..+| .|+|+|....
T Consensus 5 ~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 5 KWLTLEVCREFQRGTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp GGGEEEBCTTGGGTCCCSCTTTCSSBCCCTT
T ss_pred ccccchhcHHHhcCCCCCCCCCCCCcCCCcc
Confidence 34677889999888898887 8999987653
No 64
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.02 E-value=0.0021 Score=44.13 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=25.6
Q ss_pred ccccccccccc-cccCCCCCCCcccCCcc
Q 027188 193 NFKTKLCENFA-KGSCTFGDRCHFAHGSE 220 (227)
Q Consensus 193 ~~KTklC~~f~-~G~C~~G~~C~FAHg~~ 220 (227)
..+|.+|+.|. .|.|++|.+|.|.|..+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 47999999999 79999999999999865
No 65
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.90 E-value=0.0042 Score=46.95 Aligned_cols=32 Identities=28% Similarity=0.798 Sum_probs=25.9
Q ss_pred CCCccccccccccccccCCCCC-CCcccCCccc
Q 027188 190 QSNNFKTKLCENFAKGSCTFGD-RCHFAHGSEE 221 (227)
Q Consensus 190 ~~~~~KTklC~~f~~G~C~~G~-~C~FAHg~~E 221 (227)
.....|..+|+.|+.|.|..++ .|+|+|-.+.
T Consensus 11 ~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 11 DTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp SCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred CCCcchhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 3345567799999999999998 9999997664
No 66
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.29 E-value=0.0076 Score=41.40 Aligned_cols=28 Identities=18% Similarity=0.584 Sum_probs=25.8
Q ss_pred CCcccccccccCCCCCCCCCCCccCCCC
Q 027188 32 AVKSRLCNKYNSAEGCKFGDKCHFAHGE 59 (227)
Q Consensus 32 ~yKT~lC~~f~~~g~C~yG~~C~FAHg~ 59 (227)
..+|.+|..|...|-|++|.+|.|.|..
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccC
Confidence 3799999999999999999999999954
No 67
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.10 E-value=0.0089 Score=59.68 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=0.0
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCccccccc-ccCHHHHHHHHHHHHHHH
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIEL-EGTFDQIKQASAMVRELI 172 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~i-eGtfeqI~~As~mV~elI 172 (227)
-...|.||.++.+.|||+||.+|++|...||+++.|.+.+ .|.| ..+.+.++.|..++..++
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg------~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG------TVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp ---------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecCCc------cEEEecCCHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999888632 3333 334556667777666654
No 68
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.40 E-value=0.02 Score=57.43 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=18.8
Q ss_pred ceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCCcccccccc-cCHHHHHHHHHHHHHHH
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDPNLRNIELE-GTFDQIKQASAMVRELI 172 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~~~r~i~ie-GtfeqI~~As~mV~elI 172 (227)
...|.||.++.|.|||+||.+||+|...||++|.|-+. ..|.|. .+.+.++.|..++..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d------G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD------GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecCC------ceEEEecCCHHHHHHHHHHHHHhc
Confidence 44678999999999999999999999999999998762 334443 34555556666665543
No 69
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.34 E-value=0.016 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.902 Sum_probs=21.3
Q ss_pred ccccccccccCCCCCCCcccCCc
Q 027188 197 KLCENFAKGSCTFGDRCHFAHGS 219 (227)
Q Consensus 197 klC~~f~~G~C~~G~~C~FAHg~ 219 (227)
.+|.+|.+|.|++|+.|.|.|..
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred eEcCccccCCCCCCCCCCccCCC
Confidence 48999999999999999999963
No 70
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=89.02 E-value=0.066 Score=43.60 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=38.9
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccCCCC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHEVDP 147 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~es~~ 147 (227)
...+.+.|....+|+.||++|.+++.|.+..|.|+-|.+...|+
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d~ 78 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDL 78 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSH
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCCH
Confidence 35778889889999999999999999999999999998876553
No 71
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=88.30 E-value=0.094 Score=46.41 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=36.6
Q ss_pred cceeeehhhhhhhhhhccCCCcccccccccCCceeecccC
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 144 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e 144 (227)
-++.+.|+...-++.|||+|.|++.-.++||.++-|.+.+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 5788999999999999999999999999999999997543
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=88.00 E-value=0.041 Score=44.82 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=35.9
Q ss_pred CccceeeehhhhhhhhhhccCCCcccccccccCCceeecc
Q 027188 103 ASATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRD 142 (227)
Q Consensus 103 ~s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~ 142 (227)
..-.+.+.|+...-++.|||+|.|++...++||.++-|.+
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 3567888999999999999999999999999999988765
No 73
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=85.98 E-value=0.15 Score=47.29 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=37.1
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeecccC
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDHE 144 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~e 144 (227)
.-++.+.|+....++.|||+|.|++..+++||.++-|...+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 45788999999999999999999999999999999997643
No 74
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=83.96 E-value=0.19 Score=46.22 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=36.6
Q ss_pred ccceeeehhhhhhhhhhccCCCcccccccccCCceeeccc
Q 027188 104 SATAKISIDAKLAGAIIGKNGVNSKQICRLTGAKLSIRDH 143 (227)
Q Consensus 104 s~t~kisV~as~~G~IIGKgG~nikqI~~~TGaklsI~~~ 143 (227)
.-++.+.|+...-++.|||+|.|++.-+.+||.++-|...
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 4578999999999999999999999999999999998753
No 75
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=79.14 E-value=0.48 Score=41.12 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=20.1
Q ss_pred cccccccCCCCCCCCCCCccCCC
Q 027188 36 RLCNKYNSAEGCKFGDKCHFAHG 58 (227)
Q Consensus 36 ~lC~~f~~~g~C~yG~~C~FAHg 58 (227)
.+|.+|.. |.|.+|+.|.|.|.
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBS
T ss_pred eEcCcccc-CCCCCCCCCCccCC
Confidence 48999987 99999999999995
No 76
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=62.41 E-value=2.3 Score=37.13 Aligned_cols=26 Identities=27% Similarity=0.759 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCcccCCcc
Q 027188 194 FKTKLCENFAKGSCTFGDRCHFAHGSE 220 (227)
Q Consensus 194 ~KTklC~~f~~G~C~~G~~C~FAHg~~ 220 (227)
.|--+|.+|..|.|+| .+|.-+|...
T Consensus 173 ~kLHIC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 173 ERLHICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CSBCSCHHHHTTCCCC-SSCSSCCCTT
T ss_pred cceeccchhhcCCcCC-CCccCccCcc
Confidence 3456899999999999 7999999763
No 77
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=59.71 E-value=1.9 Score=37.44 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCCcccCCccc
Q 027188 195 KTKLCENFAKGSCTFGDRCHFAHGSEE 221 (227)
Q Consensus 195 KTklC~~f~~G~C~~G~~C~FAHg~~E 221 (227)
|..+|.|-. .|.||.+|.|-|-+.-
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCccC
Confidence 566787743 5999999999997643
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=57.85 E-value=2 Score=37.95 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=29.6
Q ss_pred hhhhhhhccCCCccccc-ccccCCceeecccCCCC
Q 027188 114 KLAGAIIGKNGVNSKQI-CRLTGAKLSIRDHEVDP 147 (227)
Q Consensus 114 s~~G~IIGKgG~nikqI-~~~TGaklsI~~~es~~ 147 (227)
+-+|+.||+.|.+++-| .++.|.||-|.+-..|+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp 160 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP 160 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCCH
Confidence 46899999999999999 78999999998766554
No 79
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=56.22 E-value=2.2 Score=36.98 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=23.0
Q ss_pred cceeeehh-hhhhhhhhccCCCccccccc
Q 027188 105 ATAKISID-AKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 105 ~t~kisV~-as~~G~IIGKgG~nikqI~~ 132 (227)
..+.|.|+ .++-|.||||+|..+|+|..
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHH
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHH
Confidence 34667777 68999999999999998765
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=51.48 E-value=2.6 Score=39.03 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=34.6
Q ss_pred cceeeehhh-----hhhhhhhccCCCccccccccc-CCceeecccCCCC
Q 027188 105 ATAKISIDA-----KLAGAIIGKNGVNSKQICRLT-GAKLSIRDHEVDP 147 (227)
Q Consensus 105 ~t~kisV~a-----s~~G~IIGKgG~nikqI~~~T-GaklsI~~~es~~ 147 (227)
.-+||-|-. +-+|+.||++|.+++.|.+.- |.||-|.+-..|+
T Consensus 235 ~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp 283 (366)
T 1k0r_A 235 HRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP 283 (366)
T ss_dssp TEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH
T ss_pred CeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcCCCH
Confidence 456777744 568999999999999998877 9999998866553
No 81
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=48.46 E-value=5.7 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.697 Sum_probs=19.0
Q ss_pred ccccccccccCCC----CCCCcccCCcc
Q 027188 197 KLCENFAKGSCTF----GDRCHFAHGSE 220 (227)
Q Consensus 197 klC~~f~~G~C~~----G~~C~FAHg~~ 220 (227)
-||++|..|.|+| +..|+|.|...
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~ 117 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVL 117 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTT
T ss_pred eechhhhcCcCCcccCCCCCcccccccC
Confidence 4789999999943 47799999764
No 82
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=47.59 E-value=3.5 Score=35.87 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=21.1
Q ss_pred eeeehh-hhhhhhhhccCCCccccccc
Q 027188 107 AKISID-AKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 107 ~kisV~-as~~G~IIGKgG~nikqI~~ 132 (227)
+.|.|+ .++.+.||||+|..+|+|..
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~ 258 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQ 258 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHH
Confidence 345555 79999999999999987765
No 83
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=46.07 E-value=4.3 Score=35.22 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=0.0
Q ss_pred CcccccccccCCCCCCCCCCCccCCCCc
Q 027188 33 VKSRLCNKYNSAEGCKFGDKCHFAHGEW 60 (227)
Q Consensus 33 yKT~lC~~f~~~g~C~yG~~C~FAHg~~ 60 (227)
-|..+|.+- ..|-||.+|.|-|-|.
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 190 HRKQPCPYG---RKCTYGIKCRFFHPER 214 (223)
T ss_dssp ----------------------------
T ss_pred cCCCCCCCC---cccccCCcceecCCcc
Confidence 366778863 5899999999999553
No 84
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=40.94 E-value=3.8 Score=30.56 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.3
Q ss_pred cceeeehhhhhhhhhhccCCCccccccc
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~ 132 (227)
...+|.|-++.-|.||||+|..|.+|..
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 3568888899999999999988777655
No 85
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=35.15 E-value=5.2 Score=32.57 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.3
Q ss_pred cceeeehhhhhhhhhhccCCCccccccccc
Q 027188 105 ATAKISIDAKLAGAIIGKNGVNSKQICRLT 134 (227)
Q Consensus 105 ~t~kisV~as~~G~IIGKgG~nikqI~~~T 134 (227)
.+..|.++-.-.|.+|||.|.+.+-|+.++
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 456788888999999999999999998877
No 86
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=26.50 E-value=19 Score=30.69 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=28.0
Q ss_pred ceeeehhhhhhhhhhccCCCccccccc----ccCCceeec
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICR----LTGAKLSIR 141 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~----~TGaklsI~ 141 (227)
-.+|.|-+..-|.||||+|..+++|.. .++.++.|.
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 467888888999999999999877654 667665554
No 87
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=23.41 E-value=17 Score=31.84 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred ceeeehhhhhhhhhhccCCCccccccc
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~ 132 (227)
-.+|.|-+..-|.||||+|..|++|..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 467888899999999999999887764
No 88
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=22.54 E-value=16 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.4
Q ss_pred eeeehh-hhhhhhhhccCCCccccccc
Q 027188 107 AKISID-AKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 107 ~kisV~-as~~G~IIGKgG~nikqI~~ 132 (227)
+.|.|. .++-+.||||+|..+|+|-.
T Consensus 233 ~~i~v~~~~~k~i~ig~~G~~~k~ig~ 259 (301)
T 1ega_A 233 GLILVEREGQKKMVIGNKGAKIKTIGI 259 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred EEEEEEECCceEEEECCCcHHHHHHHH
Confidence 566665 78889999999999887765
No 89
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.20 E-value=17 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=23.1
Q ss_pred ceeeehhhhhhhhhhccCCCccccccc
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICR 132 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~ 132 (227)
-.+|.|-+..-|.||||+|..|++|..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 467888899999999999999887654
No 90
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=21.00 E-value=21 Score=31.06 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=27.8
Q ss_pred ceeeehhhhhhhhhhccCCCccccccc----ccCCceeec
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICR----LTGAKLSIR 141 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~----~TGaklsI~ 141 (227)
-.+|.|-+..-|.||||+|..+++|.. .++.++.|.
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I~ 102 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 102 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCCE
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 467888889999999999999877654 566665554
No 91
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=20.35 E-value=26 Score=31.93 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=28.9
Q ss_pred hhhhhhhccCCCccccccccc-CCceeecccCCCC
Q 027188 114 KLAGAIIGKNGVNSKQICRLT-GAKLSIRDHEVDP 147 (227)
Q Consensus 114 s~~G~IIGKgG~nikqI~~~T-GaklsI~~~es~~ 147 (227)
+-+|+.||.+|.+++-|...- |.++-|.+...|+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d~ 279 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDP 279 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSH
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCCH
Confidence 457999999999999998766 9999998877664
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.26 E-value=16 Score=31.23 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=24.5
Q ss_pred ceeeehhhhhhhhhhccCCCccccccc----ccC
Q 027188 106 TAKISIDAKLAGAIIGKNGVNSKQICR----LTG 135 (227)
Q Consensus 106 t~kisV~as~~G~IIGKgG~nikqI~~----~TG 135 (227)
-.+|.|-+..-|.||||+|..|++|.. .++
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~ 74 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFG 74 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhC
Confidence 467888889999999999999877654 566
Done!