BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027189
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 78 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQM-SQ 194
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 195 RLASFLLYLSDVEEGGETMFP 215
R+ + L+YL+ VEEGGET+ P
Sbjct: 141 RVVTMLMYLTTVEEGGETVLP 161
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 78 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 74
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQM-SQ 194
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 75 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 132
Query: 195 RLASFLLYLSDVEEGGETMFP 215
R+ + L+YL+ VEEGGET+ P
Sbjct: 133 RVVTMLMYLTTVEEGGETVLP 153
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 78 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 73
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQM-SQ 194
ED ++ IE ++A+ TM+P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 74 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 195 RLASFLLYLSDVEEGGETMFP 215
R+ + L+YL+ VEEGGET+ P
Sbjct: 132 RVVTMLMYLTTVEEGGETVLP 152
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 78 LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
LSW PRA NF S E+C I+ A+ K +K S + G++V+S RTS+GT+ +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQM-SQ 194
ED ++ IE ++A+ T +P + E VL Y GQKY+ HYD F +P GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 195 RLASFLLYLSDVEEGGETMFP 215
R+ + L YL+ VEEGGET+ P
Sbjct: 141 RVVTXLXYLTTVEEGGETVLP 161
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 12/135 (8%)
Query: 82 PRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKT 141
P + N S E+C +I +K +L S++ + RTSSG F+ +E
Sbjct: 39 PLIVVLGNVLSDEECDELIELSKSKLARSKVG-----SSRDVNDIRTSSGAFLDDNE--- 90
Query: 142 GILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG-PQMSQRLASFL 200
+ IE +I+ +P +HGE ++L YE+ Q+Y +HYD F AE+ + R+++ +
Sbjct: 91 -LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYF--AEHSRSAANNRISTLV 147
Query: 201 LYLSDVEEGGETMFP 215
YL+DVEEGGET FP
Sbjct: 148 XYLNDVEEGGETFFP 162
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 20 LCSFFFLAGFY-----GSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQS 72
+ L+G++ G TF + PS P L+TLE++ +E E L G+T DA I++
Sbjct: 114 ILDILNLSGYFDLIVGGDTFGEKK-PSPTPVLKTLEILGEEPEKALIVGDT-DADIEA 169
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 20 LCSFFFLAGFY-----GSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQS 72
+ L+G++ G TF + PS P L+TLE++ +E E L G+T DA I++
Sbjct: 116 ILDILNLSGYFDLIVGGDTFGEKK-PSPTPVLKTLEILGEEPEKALIVGDT-DADIEA 171
>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|B Chain B, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|C Chain C, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
pdb|1T90|D Chain D, Crystal Structure Of Methylmalonate Semialdehyde
Dehydrogenase From Bacillus Subtilis
Length = 486
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 18 LLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHG 63
++ C F +A G+TF+ + PS R L T ++VE ++GLP G
Sbjct: 156 MVPCWMFPMAIALGNTFILK--PSERTPLLTEKLVELFEKAGLPKG 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,588,477
Number of Sequences: 62578
Number of extensions: 253447
Number of successful extensions: 444
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 10
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)