Query 027189
Match_columns 227
No_of_seqs 200 out of 1175
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 3.3E-38 7.1E-43 282.5 17.5 153 63-218 35-187 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 7.3E-36 1.6E-40 264.7 12.4 150 68-219 81-236 (289)
3 smart00702 P4Hc Prolyl 4-hydro 99.9 1.3E-25 2.9E-30 185.4 13.9 131 82-219 1-135 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.7 4.3E-16 9.4E-21 134.3 11.5 123 84-217 2-137 (226)
5 PHA02813 hypothetical protein; 99.3 1.7E-11 3.7E-16 110.6 9.6 105 106-217 35-144 (354)
6 PHA02869 C4L/C10L-like gene fa 99.2 8.3E-11 1.8E-15 107.6 8.0 101 107-216 45-152 (418)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.7 4.2E-08 9.1E-13 69.6 5.0 54 162-219 10-67 (70)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 98.5 4.9E-08 1.1E-12 72.9 2.4 46 165-217 1-49 (100)
9 COG3128 PiuC Uncharacterized i 97.9 5E-05 1.1E-09 63.7 8.4 122 83-215 3-138 (229)
10 PF03336 Pox_C4_C10: Poxvirus 97.5 0.00023 5E-09 64.6 6.4 85 126-215 40-127 (339)
11 PHA02866 Hypothetical protein; 97.0 0.0016 3.5E-08 58.2 5.9 97 107-216 32-130 (333)
12 TIGR02408 ectoine_ThpD ectoine 96.6 0.024 5.2E-07 50.2 10.3 131 78-214 25-164 (277)
13 COG3751 EGL-9 Predicted prolin 96.5 0.015 3.3E-07 51.1 8.4 51 163-219 136-190 (252)
14 KOG3710 EGL-Nine (EGLN) protei 96.3 0.034 7.3E-07 48.3 9.1 128 83-220 54-199 (280)
15 PF03171 2OG-FeII_Oxy: 2OG-Fe( 94.4 0.023 5E-07 41.8 1.8 42 163-218 2-46 (98)
16 PF05721 PhyH: Phytanoyl-CoA d 94.3 0.047 1E-06 44.3 3.4 122 84-214 6-143 (211)
17 PF13532 2OG-FeII_Oxy_2: 2OG-F 93.8 0.75 1.6E-05 37.8 9.9 110 84-201 2-130 (194)
18 KOG3200 Uncharacterized conser 92.8 0.44 9.5E-06 40.0 6.8 102 77-183 7-108 (224)
19 TIGR01762 chlorin-enz chlorina 90.9 1.7 3.8E-05 38.8 9.0 124 83-214 15-152 (288)
20 PHA02923 hypothetical protein; 84.6 3.7 8.1E-05 37.1 6.9 66 142-219 44-111 (315)
21 KOG3844 Predicted component of 81.7 7.9 0.00017 36.5 8.0 63 146-217 100-167 (476)
22 PRK15401 alpha-ketoglutarate-d 79.7 12 0.00027 32.1 8.2 100 80-183 16-136 (213)
23 KOG3959 2-Oxoglutarate- and ir 72.5 4.1 9E-05 35.8 3.3 94 82-183 72-174 (306)
24 PF13334 DUF4094: Domain of un 68.1 4.1 8.8E-05 30.6 2.1 18 16-33 4-21 (95)
25 TIGR00568 alkb DNA alkylation 60.0 16 0.00035 30.1 4.4 41 142-182 74-114 (169)
26 PF09859 Oxygenase-NA: Oxygena 59.5 12 0.00026 31.1 3.5 46 164-216 63-111 (173)
27 PF03511 Fanconi_A: Fanconi an 57.3 8.7 0.00019 26.7 2.0 23 19-41 5-28 (64)
28 PF04650 YSIRK_signal: YSIRK t 52.1 10 0.00022 22.0 1.4 25 1-25 1-27 (27)
29 PLN03193 beta-1,3-galactosyltr 46.1 20 0.00043 33.9 3.1 35 1-35 1-39 (408)
30 KOG3159 Lipoate-protein ligase 44.4 16 0.00035 33.2 2.1 18 208-225 80-97 (336)
31 PRK13254 cytochrome c-type bio 43.5 16 0.00034 29.7 1.8 34 1-34 1-34 (148)
32 PRK09553 tauD taurine dioxygen 41.0 19 0.00042 31.6 2.1 33 177-215 95-127 (277)
33 COG3145 AlkB Alkylated DNA rep 40.0 1.1E+02 0.0024 25.9 6.5 58 125-184 70-127 (194)
34 PF03100 CcmE: CcmE; InterPro 36.8 12 0.00027 29.4 0.2 32 1-33 1-32 (131)
35 PF12273 RCR: Chitin synthesis 34.0 36 0.00077 26.5 2.4 21 13-33 3-23 (130)
36 PF13759 2OG-FeII_Oxy_5: Putat 33.6 57 0.0012 23.9 3.4 42 166-218 3-44 (101)
37 TIGR02409 carnitine_bodg gamma 28.3 65 0.0014 29.5 3.5 36 175-216 186-221 (366)
38 TIGR02466 conserved hypothetic 28.0 2.2E+02 0.0047 24.1 6.4 43 162-215 95-137 (201)
39 cd00250 CAS_like Clavaminic ac 26.4 82 0.0018 27.0 3.6 37 174-216 94-130 (262)
40 PLN00139 hypothetical protein; 25.9 84 0.0018 28.6 3.7 37 174-216 111-147 (320)
41 PF10161 DDDD: Putative mitoch 25.8 18 0.00039 26.3 -0.5 25 9-33 34-58 (79)
42 PF08139 LPAM_1: Prokaryotic m 23.8 76 0.0016 18.0 1.9 13 16-28 10-22 (25)
43 cd08788 CARD_NOD2_2_CARD15 Cas 23.7 34 0.00073 25.0 0.6 15 87-101 25-39 (81)
44 PF11120 DUF2636: Protein of u 23.7 74 0.0016 22.1 2.2 23 14-36 7-29 (62)
45 COG2850 Uncharacterized conser 23.2 1.4E+02 0.003 28.0 4.5 32 153-185 109-141 (383)
46 PRK13150 cytochrome c-type bio 22.7 49 0.0011 27.3 1.4 34 1-34 1-34 (159)
47 PF02668 TauD: Taurine catabol 22.5 60 0.0013 27.2 2.0 36 175-216 96-131 (258)
48 PHA02577 2 DNA end protector p 22.3 61 0.0013 27.1 1.8 53 163-218 33-85 (181)
49 PF06716 DUF1201: Protein of u 21.5 69 0.0015 21.0 1.6 10 16-25 13-22 (54)
50 PF01490 Aa_trans: Transmembra 20.5 64 0.0014 29.1 1.8 38 1-38 218-256 (409)
51 PF06692 MNSV_P7B: Melon necro 20.1 1.1E+02 0.0024 20.8 2.4 22 11-32 13-34 (61)
52 PF06643 DUF1158: Protein of u 20.0 97 0.0021 22.3 2.2 19 12-30 47-65 (82)
53 PF06092 DUF943: Enterobacteri 20.0 74 0.0016 26.1 1.9 27 151-177 67-94 (157)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=3.3e-38 Score=282.51 Aligned_cols=153 Identities=33% Similarity=0.599 Sum_probs=131.1
Q ss_pred CCCCCCcccccccEEeecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCCChHH
Q 027189 63 GETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTG 142 (227)
Q Consensus 63 ~~~~~~~l~~~P~k~ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~ 142 (227)
+..+.+.+....+++|||+|+|++|+||||++||++||+++++++++|++.+..+. ....+++|+|+++|++..+| +
T Consensus 35 ~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g-~~~~s~~RTS~~~~l~~~~d--p 111 (310)
T PLN00052 35 AVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSG-KSVMSEVRTSSGMFLDKRQD--P 111 (310)
T ss_pred cccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCC-ccccCCCEEecceeecCCCC--H
Confidence 34444555655667999999999999999999999999999999999998754321 22456799999999987766 4
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189 143 ILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV 218 (227)
Q Consensus 143 v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 218 (227)
++++|++||++++++|.++.|.+||+||++||+|++|+|++........+++|++|+|+|||||++||||+||++.
T Consensus 112 vv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~ 187 (310)
T PLN00052 112 VVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAE 187 (310)
T ss_pred HHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcc
Confidence 9999999999999999999999999999999999999999875433335689999999999999999999999984
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-36 Score=264.68 Aligned_cols=150 Identities=40% Similarity=0.695 Sum_probs=134.3
Q ss_pred CcccccccE--EeecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCCChHHHHH
Q 027189 68 ASIQSIPFQ--VLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILE 145 (227)
Q Consensus 68 ~~l~~~P~k--~ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~ 145 (227)
+++.++|+| ++||+|+|++||||+|++||++|+++|+++++++++....+......+.+|+|+++|+..+++ ++++
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~--~~~~ 158 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGAS--PVVS 158 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCC--HHHH
Confidence 889999997 899999999999999999999999999999999999655444444556689999999998554 5999
Q ss_pred HHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCCCC--C--CCCCCCceeEEEEEeccCCCCCcceeccCCCC
Q 027189 146 LIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPA--E--YGPQMSQRLASFLLYLSDVEEGGETMFPFEVD 219 (227)
Q Consensus 146 ~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~--~--~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~ 219 (227)
+|++||++++++|.+++|.|||+||++||+|.+|+|++.+. . .....++|++|+|+||+||++||+|+||.++.
T Consensus 159 ~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~ 236 (289)
T KOG1591|consen 159 RIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM 236 (289)
T ss_pred HHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999641 1 23467999999999999999999999999987
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.93 E-value=1.3e-25 Score=185.43 Aligned_cols=131 Identities=32% Similarity=0.484 Sum_probs=113.1
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCC-ChHHHHHHHHHHHHHhcCCC--
Q 027189 82 PRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASE-DKTGILELIEHKIARATMLP-- 158 (227)
Q Consensus 82 P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~e-d~~~v~~~I~~ri~~~tglp-- 158 (227)
|.|++++||||++||++|++.+++...++.+....+.. ...+++|+|..+|++..+ + ++.++|.+|++++++++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~~~--~~~~~l~~~i~~~~~~~~~ 77 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNP-NHDSKYRQSNGTWLELLKGD--LVIERIRQRLADFLGLLRG 77 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCc-cccCCCEeecceecCCCCCC--HHHHHHHHHHHHHHCCCch
Confidence 78999999999999999999999977778776533321 145679999999998764 3 58999999999999998
Q ss_pred -CCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCCC
Q 027189 159 -QTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVD 219 (227)
Q Consensus 159 -~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~ 219 (227)
....|.+|++||++|++|.+|+|...... .++|.+|+++||||+++||+|.||..+.
T Consensus 78 ~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~ 135 (178)
T smart00702 78 LPLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL 135 (178)
T ss_pred hhccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC
Confidence 67899999999999999999999986542 2689999999999999999999998864
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.67 E-value=4.3e-16 Score=134.27 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=87.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhh-ccCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHHhc-------
Q 027189 84 ALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT------- 155 (227)
Q Consensus 84 I~~i~nfLs~~EC~~Li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~t------- 155 (227)
|+.++|+||++||+++++..+. .+.+..+.. |. ..+++|++..+-.+ + ++.+.|.++|.+.+
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta--G~---~~~~vKnN~ql~~d---~--~~a~~l~~~i~~~L~~~~l~~ 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA--GA---QAAQVKNNQQLPED---S--PLARELGNLILDALTRNPLFF 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc--Cc---cchhcccccccCCC---C--HHHHHHHHHHHHHHhcCchhh
Confidence 6789999999999999999875 566555432 22 24578887765422 2 35566666666543
Q ss_pred --CCCCCCCccccEEEcCCCCCcccccCCCCCCCCC-CCCCceeEEEEEeccCCC--CCcceeccCC
Q 027189 156 --MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG-PQMSQRLASFLLYLSDVE--EGGETMFPFE 217 (227)
Q Consensus 156 --glp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~-~~~~~R~~T~liYLNDv~--eGGeT~Fp~~ 217 (227)
.+|... .+++++||.+|++|++|+|.......+ ....+|.+|+++||||++ +||||+|+..
T Consensus 72 sa~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 72 SAALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred hhcccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 344333 578999999999999999997543211 122356899999999875 7999999864
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=110.62 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=78.6
Q ss_pred ccCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHH-hcCCC----CCCCccccEEEcCCCCCccccc
Q 027189 106 RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIAR-ATMLP----QTHGEAFNVLRYEIGQKYDSHY 180 (227)
Q Consensus 106 ~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~-~tglp----~~~~E~lqv~rY~~G~~Y~~H~ 180 (227)
...+|.+.......+....++|+++++.++.. ..+.++|+..+-+ +.|.+ ...+|.++++||.+||+|++|.
T Consensus 35 ~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H~ 111 (354)
T PHA02813 35 IWEESKVFDHEKGGEVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNHR 111 (354)
T ss_pred CccccceeccccCceEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCccc
Confidence 56788887632223467889999999999853 2355555555543 33433 3568999999999999999999
Q ss_pred CCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCC
Q 027189 181 DAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFE 217 (227)
Q Consensus 181 D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~ 217 (227)
|+..... ...+.+|+|+|||++++||+|.|...
T Consensus 112 Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 112 DFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred CCceeec----CCceEEEEEEEEeccCCCCceEEEcC
Confidence 9865432 13389999999999999999999876
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.16 E-value=8.3e-11 Score=107.64 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=75.1
Q ss_pred cCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHHh-----cCC--CCCCCccccEEEcCCCCCcccc
Q 027189 107 LKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA-----TML--PQTHGEAFNVLRYEIGQKYDSH 179 (227)
Q Consensus 107 l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~-----tgl--p~~~~E~lqv~rY~~G~~Y~~H 179 (227)
..+|.+.....+.+......|.|..+.+.+. +.+.|.+|++.. -++ ..+.+|+++++||.+||+|++|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~~-----La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H 119 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFENS-----LNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARH 119 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEechH-----HHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccc
Confidence 4677777633223445666799998888643 445555555543 343 3467899999999999999999
Q ss_pred cCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 180 YDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 180 ~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
.|+....+ .....+|+|+|||++++||+|.|..
T Consensus 120 ~Dg~~~rs----~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 120 RDFSTVFS----KNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred ccCceecC----CCEEEEEEEEEEeccCCCCceEEEe
Confidence 99865442 4567899999999999999999987
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.65 E-value=4.2e-08 Score=69.63 Aligned_cols=54 Identities=30% Similarity=0.444 Sum_probs=44.5
Q ss_pred CccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEecc----CCCCCcceeccCCCC
Q 027189 162 GEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLS----DVEEGGETMFPFEVD 219 (227)
Q Consensus 162 ~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLN----Dv~eGGeT~Fp~~~~ 219 (227)
.+.++.++|..|++|++|+|...... ..+|.+|++|||| +..+||++.|..-..
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~~ 67 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDDGG 67 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCCCC
Confidence 56789999999999999999976542 4789999999999 456788888876543
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=98.52 E-value=4.9e-08 Score=72.87 Aligned_cols=46 Identities=37% Similarity=0.522 Sum_probs=37.2
Q ss_pred ccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCC---CCcceeccCC
Q 027189 165 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE---EGGETMFPFE 217 (227)
Q Consensus 165 lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~---eGGeT~Fp~~ 217 (227)
.|+.+|.+|++|++|+|... ...+.+|+++|||+++ +||+|.|...
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~ 49 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPS 49 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTT
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEecc
Confidence 37899999999999999865 2578999999999877 8999999874
No 9
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=97.93 E-value=5e-05 Score=63.69 Aligned_cols=122 Identities=22% Similarity=0.236 Sum_probs=73.0
Q ss_pred cEEEecCCCCHHHHHHHHHHHhh-ccCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHHh-cC----
Q 027189 83 RALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA-TM---- 156 (227)
Q Consensus 83 ~I~~i~nfLs~~EC~~Li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~-tg---- 156 (227)
-.+.|+.+||+++|.+|.+..+. ...+..+.. | ..-..+|++..+-.+ . +....+..-|.+. +.
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~--g---~q~a~vk~n~qlp~~---s--~l~~~vg~~il~al~~~plf 72 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ--G---PQGAQVKNNLQLPQD---S--ALARELGNEILQALTAHPLF 72 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhcccccccccc--C---cchhhhhccccCCcc---c--HHHHHHHHHHHHHHHhchhH
Confidence 35678999999999999887754 222222211 1 112334444432222 1 3444554444432 11
Q ss_pred ----CCCCCCccccEEEcCCCCCcccccCCCCCC-CCCCC-CCceeEEEEEeccCCC--CCcceecc
Q 027189 157 ----LPQTHGEAFNVLRYEIGQKYDSHYDAFNPA-EYGPQ-MSQRLASFLLYLSDVE--EGGETMFP 215 (227)
Q Consensus 157 ----lp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~-~~~~~-~~~R~~T~liYLNDv~--eGGeT~Fp 215 (227)
+|. ..++.++.+|..|+.|.+|.|+.... +.+.. .-+..+++-++|+|++ +|||.+--
T Consensus 73 f~aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~ 138 (229)
T COG3128 73 FAAALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVN 138 (229)
T ss_pred HHhhccc-ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEe
Confidence 232 45778999999999999999997554 32111 2233466778999986 59998753
No 10
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=97.50 E-value=0.00023 Score=64.59 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=64.2
Q ss_pred eeecceeEecCCCChHHHHHHHHHHHHHhc-C-C-CCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEe
Q 027189 126 TRTSSGTFISASEDKTGILELIEHKIARAT-M-L-PQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLY 202 (227)
Q Consensus 126 ~RtS~~~~l~~~ed~~~v~~~I~~ri~~~t-g-l-p~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liY 202 (227)
.|.|+.+.+... +..++.++|++.+...+ . + .....+.+.+.+|.+|++|+.|.|..... .....-.++++|
T Consensus 40 ~r~sk~iv~~~~-~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~LvLy 114 (339)
T PF03336_consen 40 FRKSKQIVIEDS-LNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLVLY 114 (339)
T ss_pred ccccceEEEecc-chHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEEEE
Confidence 788888777643 43468888888876533 2 1 22356789999999999999999943322 245678999999
Q ss_pred ccCCCCCcceecc
Q 027189 203 LSDVEEGGETMFP 215 (227)
Q Consensus 203 LNDv~eGGeT~Fp 215 (227)
||.+++||+|.+.
T Consensus 115 L~~~~~GGktkiy 127 (339)
T PF03336_consen 115 LNNPENGGKTKIY 127 (339)
T ss_pred EeccCCCceEEEE
Confidence 9999999999976
No 11
>PHA02866 Hypothetical protein; Provisional
Probab=96.96 E-value=0.0016 Score=58.17 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=64.6
Q ss_pred cCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHHh--cCCCCCCCccccEEEcCCCCCcccccCCCC
Q 027189 107 LKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA--TMLPQTHGEAFNVLRYEIGQKYDSHYDAFN 184 (227)
Q Consensus 107 l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~--tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~ 184 (227)
+.+|.+......-.......|.|.++ + ++++++. |+.++ ..-+.-..+.+.+.+|..|.+|.-|+|...
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~--~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~ 102 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------K--QVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILT 102 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------H--HHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEE
Confidence 77788765221112234445655543 1 4777766 33332 122223467899999999999999999754
Q ss_pred CCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 185 PAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 185 ~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
.. ....+-.++++||+.+++||+|.++-
T Consensus 103 ~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv 130 (333)
T PHA02866 103 ED----RHRGREYTLVLHLSSPKNGGKTDVCV 130 (333)
T ss_pred ec----cCCceEEEEEEEEeccccCCceEEEe
Confidence 32 23567899999999999999999983
No 12
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.55 E-value=0.024 Score=50.21 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=65.8
Q ss_pred eecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCce--eeeccceeecceeEecCCCCh--HHH--HHHHHHHH
Q 027189 78 LSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGET--VESTKGTRTSSGTFISASEDK--TGI--LELIEHKI 151 (227)
Q Consensus 78 ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~--~~~~~~~RtS~~~~l~~~ed~--~~v--~~~I~~ri 151 (227)
...+- -++++++|+++||+.|.+..+.-+....... .+.. .......|. .+.....++ ..+ -..|.+.+
T Consensus 25 f~~dG-yvvl~~vls~eev~~lr~~i~~~~~~~~~~~-~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~ 99 (277)
T TIGR02408 25 YERDG-FLLLENLFSDDEVAALLAEVERMTRDPAIVR-DEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAA 99 (277)
T ss_pred HHHCC-EEECcccCCHHHHHHHHHHHHHHHhcccccC-CCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHH
Confidence 33344 4788999999999999998876443211100 0000 000112232 111111121 011 13344555
Q ss_pred HHhcCCCCCCCccccEEEcC-CCCCcccccCCCC-CCCCCCCCCceeEEEEEeccCCCC-Ccceec
Q 027189 152 ARATMLPQTHGEAFNVLRYE-IGQKYDSHYDAFN-PAEYGPQMSQRLASFLLYLSDVEE-GGETMF 214 (227)
Q Consensus 152 ~~~tglp~~~~E~lqv~rY~-~G~~Y~~H~D~~~-~~~~~~~~~~R~~T~liYLNDv~e-GGeT~F 214 (227)
++++|-+.......-+.+.+ .|+.+.||.|+.. ....+ ....+.+|+.++|.|+.+ .|++.|
T Consensus 100 ~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~-~p~~~~vt~wiaLdD~t~eNG~l~v 164 (277)
T TIGR02408 100 RQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDG-MPSMRAVSCSIALTDNNETNGPLML 164 (277)
T ss_pred HHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCC-CCCcCeEEEEEEcccCCCCCCCEEE
Confidence 66677543221111123344 3567889999743 11111 113368999999999754 476666
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.015 Score=51.14 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=44.3
Q ss_pred ccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccC---CCCCcce-eccCCCC
Q 027189 163 EAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSD---VEEGGET-MFPFEVD 219 (227)
Q Consensus 163 E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v~eGGeT-~Fp~~~~ 219 (227)
-+.|+.-|.+|.+|..|-|.+.+ ...|.+|.++|+|. .+-||+. .|+....
T Consensus 136 ve~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~ 190 (252)
T COG3751 136 VEGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQK 190 (252)
T ss_pred eeeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccc
Confidence 36799999999999999999865 36799999999997 5789999 8888774
No 14
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=96.29 E-value=0.034 Score=48.34 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=75.4
Q ss_pred cEEEecCCCCHHHHHHHHHHHhh-----ccCccceeccCCceeeeccceeecceeEecCCCChHHH-------HHHHHHH
Q 027189 83 RALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGI-------LELIEHK 150 (227)
Q Consensus 83 ~I~~i~nfLs~~EC~~Li~~a~~-----~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v-------~~~I~~r 150 (227)
.+.+++|||-.+--..+.+..+. .+.+.++...+ ....+++|..+..|+...+-.-.. ++.+...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~---~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h 130 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPD---AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILH 130 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCc---CCcchhhccCCceEecCCCCCccceeeecccchhhhhh
Confidence 36789999998887777666553 45555555321 123458999999999865421000 1111111
Q ss_pred HHHhcCCCCCCCccccEEEcC-CCCCcccccCCCCCCCCCCCCCceeEEEEEeccC---C--CCCcceeccCCCCc
Q 027189 151 IARATMLPQTHGEAFNVLRYE-IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSD---V--EEGGETMFPFEVDL 220 (227)
Q Consensus 151 i~~~tglp~~~~E~lqv~rY~-~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v--~eGGeT~Fp~~~~~ 220 (227)
.....+--...-..-.|+.|. .|-.|-.|+|.-. +..|..|++.|||. + ..|+--.||.-...
T Consensus 131 ~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~~ 199 (280)
T KOG3710|consen 131 CNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGSTT 199 (280)
T ss_pred hccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCCc
Confidence 111111111112344688895 6889999999743 46799999999994 3 23444456655443
No 15
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=94.45 E-value=0.023 Score=41.80 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=31.6
Q ss_pred ccccEEEcC---CCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189 163 EAFNVLRYE---IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV 218 (227)
Q Consensus 163 E~lqv~rY~---~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 218 (227)
+.+++.+|. .+..+.+|+|.. .+++|++++ .++|++.|...+
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~ 46 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG 46 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc
Confidence 568999999 889999999985 467999999 667888887654
No 16
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=94.26 E-value=0.047 Score=44.30 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhhc----cCcc-ceeccCCceeeeccceeecceeEecCCCC-hHHHH-H-HHHHHHHHhc
Q 027189 84 ALYFPNFASAEQCQSIIATAKKR----LKPS-QLALRQGETVESTKGTRTSSGTFISASED-KTGIL-E-LIEHKIARAT 155 (227)
Q Consensus 84 I~~i~nfLs~~EC~~Li~~a~~~----l~~s-~v~~~~G~~~~~~~~~RtS~~~~l~~~ed-~~~v~-~-~I~~ri~~~t 155 (227)
.++++|+|+++||+.|.+..... .... ..... ...........++..... ...+. . .+.+.++++.
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDF------FDESFFGDYTEQLAKSPNFYDLFLHPPRILDLVRALL 79 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEE------ESTSCCCTCCCCGCCCHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccc------cccccccccccccccchhhHHHHhhHHHHHHHHHHhh
Confidence 47899999999999999888652 1111 10000 000001111112211100 01112 2 4666677777
Q ss_pred CCCCC----CCcccc-EEEcC-CCCCc-ccccCCCCCCCCCCCCCceeEEEEEeccCC-CCCcceec
Q 027189 156 MLPQT----HGEAFN-VLRYE-IGQKY-DSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMF 214 (227)
Q Consensus 156 glp~~----~~E~lq-v~rY~-~G~~Y-~~H~D~~~~~~~~~~~~~R~~T~liYLNDv-~eGGeT~F 214 (227)
|-+.. ....++ +.+-. +|... .+|.|...... ....+.+|+.++|.|+ .+.|.+.+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v 143 (211)
T PF05721_consen 80 GSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEV 143 (211)
T ss_dssp TSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEE
T ss_pred CCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEe
Confidence 76432 122221 23332 46665 99999754321 1157899999999997 34555554
No 17
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=93.80 E-value=0.75 Score=37.79 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=51.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhhcc--CccceeccCCceeee-------------ccceeecce-eEecC--CCChHHHHH
Q 027189 84 ALYFPNFASAEQCQSIIATAKKRL--KPSQLALRQGETVES-------------TKGTRTSSG-TFISA--SEDKTGILE 145 (227)
Q Consensus 84 I~~i~nfLs~~EC~~Li~~a~~~l--~~s~v~~~~G~~~~~-------------~~~~RtS~~-~~l~~--~ed~~~v~~ 145 (227)
+++++||||++|.++|++...... ...+.. .++.-.. ...++-+.. .+-.. ..-+ +.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p-~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP--MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFP-EWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC--CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCH-HHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc--CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCcc-HHHH
Confidence 689999999999999999887422 111111 1111000 011111111 01000 0112 2345
Q ss_pred HHHHHHHHhcC-CCCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEE
Q 027189 146 LIEHKIARATM-LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLL 201 (227)
Q Consensus 146 ~I~~ri~~~tg-lp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~li 201 (227)
.+-+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL 130 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL 130 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE
Confidence 55555555444 22223445677889999999999998743 12445555544
No 18
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.44 Score=39.97 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=56.3
Q ss_pred EeecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCCChHHHHHHHHHHHHHhcC
Q 027189 77 VLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATM 156 (227)
Q Consensus 77 ~ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~tg 156 (227)
++-..|.+++|+||++++|-+.+.+..+..-++--....+-.- +.--.+ ......+. .+-+ +-++.+..+|... |
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRL-qNyGGv-vh~~glip-eelP-~wLq~~v~kinnl-g 81 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRL-QNYGGV-VHKTGLIP-EELP-PWLQYYVDKINNL-G 81 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhh-hhcCCc-cccCCcCc-cccC-HHHHHHHHHhhcc-c
Confidence 4556789999999999999999988876422221100000000 000000 00111222 2233 3455555666643 3
Q ss_pred CCCCCCccccEEEcCCCCCcccccCCC
Q 027189 157 LPQTHGEAFNVLRYEIGQKYDSHYDAF 183 (227)
Q Consensus 157 lp~~~~E~lqv~rY~~G~~Y~~H~D~~ 183 (227)
+=.+.....-|..|.+||---||.|+-
T Consensus 82 lF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 82 LFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred ccCCCcceeEeecccCCCCcCcCCCCC
Confidence 322234456777899999999999983
No 19
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=90.89 E-value=1.7 Score=38.80 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=63.3
Q ss_pred cEEEecCCCCHHHHHHHHHHHhhccC-ccceeccCCceeeeccceeecceeEecCCCChH----HHHHHHHHHHHHhcCC
Q 027189 83 RALYFPNFASAEQCQSIIATAKKRLK-PSQLALRQGETVESTKGTRTSSGTFISASEDKT----GILELIEHKIARATML 157 (227)
Q Consensus 83 ~I~~i~nfLs~~EC~~Li~~a~~~l~-~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~----~v~~~I~~ri~~~tgl 157 (227)
..+++++++|++|++.|.+.++..+. ++......+. ...|. .|-....++. ..-.+|-..+++++|-
T Consensus 15 Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~l~~~~~l~~~~~~llG~ 86 (288)
T TIGR01762 15 GFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG-----GTNIA---NYDRHLDDDFLASHICRPEICHRVESILGP 86 (288)
T ss_pred CEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC-----CceeE---eeeecccCHHHHHHhcCHHHHHHHHHHhCC
Confidence 34678999999999999998865332 1111100000 11111 1111111110 0123344555566675
Q ss_pred CCCCCccccEEEcCCCCCcccccCCCCCCCCC------C--CCCceeEEEEEeccCCC-CCcceec
Q 027189 158 PQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG------P--QMSQRLASFLLYLSDVE-EGGETMF 214 (227)
Q Consensus 158 p~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~------~--~~~~R~~T~liYLNDv~-eGGeT~F 214 (227)
+....-.--+.+...++...||.|...-...+ + ....+.+|+.+-|.|+. +-|.+.|
T Consensus 87 ~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~v 152 (288)
T TIGR01762 87 NVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQF 152 (288)
T ss_pred cEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEE
Confidence 44322222344554445589999964321100 0 11247899999999974 4566655
No 20
>PHA02923 hypothetical protein; Provisional
Probab=84.58 E-value=3.7 Score=37.07 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCC--CCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCCC
Q 027189 142 GILELIEHKIARATMLPQ--THGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVD 219 (227)
Q Consensus 142 ~v~~~I~~ri~~~tglp~--~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~ 219 (227)
.+.+.|+..+-+-+.... .....+.+..|++|.+ .|. + ..+.-..+++||+.++.||+|.|+.-+.
T Consensus 44 di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~t 111 (315)
T PHA02923 44 DISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPET 111 (315)
T ss_pred HHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCCC
Confidence 478888877766443321 2345789999999985 111 1 1237789999999999999999988764
No 21
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=81.67 E-value=7.9 Score=36.46 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCC----CCccee-ccCC
Q 027189 146 LIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE----EGGETM-FPFE 217 (227)
Q Consensus 146 ~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~----eGGeT~-Fp~~ 217 (227)
....-++.++|--...--++.+..|..|.+--+|-|.. +.|..++++||-|.. -||+.. ||..
T Consensus 100 e~r~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d 167 (476)
T KOG3844|consen 100 EARGEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDD 167 (476)
T ss_pred HHHHHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccc
Confidence 33444556675433334578889999999999998864 568899999999864 366654 4443
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=79.71 E-value=12 Score=32.10 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=59.5
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhh-----ccCccceeccCCcee-------------eeccceeecceeEecCCCChH
Q 027189 80 WRPRALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETV-------------ESTKGTRTSSGTFISASEDKT 141 (227)
Q Consensus 80 ~~P~I~~i~nfLs~~EC~~Li~~a~~-----~l~~s~v~~~~G~~~-------------~~~~~~RtS~~~~l~~~ed~~ 141 (227)
..|.++++++|. .++.++|++..+. .+..-.+ ..|..- .....+|-|...-.. ...+.
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~--~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~-~~pwp 91 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVT--PGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLT-GKPWP 91 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceec--CCCCcceeEEeccccceEecCCCCcccCCcCCCC-CCCCC
Confidence 477899999996 8888888877654 1222111 112100 000123333211000 01111
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCC
Q 027189 142 ---GILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF 183 (227)
Q Consensus 142 ---~v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~ 183 (227)
+.+..|.++++..++.+.-..+..-|..|.+|+.-.+|.|.-
T Consensus 92 ~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~ 136 (213)
T PRK15401 92 AMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKD 136 (213)
T ss_pred CchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCC
Confidence 257888888888888754445677888899999999999963
No 23
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=72.52 E-value=4.1 Score=35.80 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=53.2
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhh-ccCccceeccC---C-ceeeeccceeecceeEecCCCChHHHHHHHHHHHHHhcC
Q 027189 82 PRALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQ---G-ETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATM 156 (227)
Q Consensus 82 P~I~~i~nfLs~~EC~~Li~~a~~-~l~~s~v~~~~---G-~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~tg 156 (227)
|.|.+++||||.+|-..|++.... -...|+-.-++ | +.+-..+..|+..-+=++ ...+.+.+|+....+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P------~~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMP------EYADMVLRRMSEYPV 145 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCCc------hHHHHHHHHhhccch
Confidence 788999999999999999998864 22222221110 1 111112334443322222 356777788887654
Q ss_pred CCCCCCccccE--EEcCC--CCCcccccCCC
Q 027189 157 LPQTHGEAFNV--LRYEI--GQKYDSHYDAF 183 (227)
Q Consensus 157 lp~~~~E~lqv--~rY~~--G~~Y~~H~D~~ 183 (227)
+- ...++.- +-|.+ |.--.+|.|-.
T Consensus 146 l~--gfqp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 146 LK--GFQPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred hh--ccCcHHHcCcccccccCCccCccccch
Confidence 41 1112211 34664 78899999964
No 24
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=68.08 E-value=4.1 Score=30.64 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027189 16 TALLLCSFFFLAGFYGST 33 (227)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (227)
.++++|++.|+||++..+
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 478999999999999877
No 25
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=59.97 E-value=16 Score=30.14 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCC
Q 027189 142 GILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDA 182 (227)
Q Consensus 142 ~v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~ 182 (227)
+.+..|.+++++.+|++....+..-|..|.+|+.-.+|.|.
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 57888999999998886555677788889999999999995
No 26
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=59.49 E-value=12 Score=31.07 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=34.0
Q ss_pred cccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCC---CCCcceeccC
Q 027189 164 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGETMFPF 216 (227)
Q Consensus 164 ~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv---~eGGeT~Fp~ 216 (227)
..-+++|++|++=..|.|..-..-. -+-+.+-||+. +.|||.+...
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~vF-------PlQvv~lLs~Pg~DftGGEFVltE 111 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHVF-------PLQVVILLSEPGEDFTGGEFVLTE 111 (173)
T ss_pred chhhheeCCCCccccccCCCCCccc-------CeEEEEEcCCCCCcccCceEEEEE
Confidence 3578999999999999997533211 15678889984 6799988754
No 27
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=57.34 E-value=8.7 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=16.4
Q ss_pred HHHHHHH-HHHhhccccccCCCCC
Q 027189 19 LLCSFFF-LAGFYGSTFLSRDVPS 41 (227)
Q Consensus 19 ~~~~~~~-~~~~~~~~~~~~~~~~ 41 (227)
|+++||| |.|..+|-+-+++..+
T Consensus 5 LvsLfFFSLM~LlSs~l~p~~~~d 28 (64)
T PF03511_consen 5 LVSLFFFSLMGLLSSYLAPKEGAD 28 (64)
T ss_pred HHHHHHHHHHHHHHHhcCcccccc
Confidence 4455555 9999999998776443
No 28
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=52.09 E-value=10 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=17.0
Q ss_pred CCCccccc-ce-eechhHHHHHHHHHH
Q 027189 1 MKGKAKRS-ST-KLGLPTALLLCSFFF 25 (227)
Q Consensus 1 ~~~~~~~~-~~-~~~~~~~~~~~~~~~ 25 (227)
|+.|.+-+ |+ +.|+..|++..+||+
T Consensus 1 ~~k~~rysIRK~svGv~SV~ig~~~~~ 27 (27)
T PF04650_consen 1 MEKKQRYSIRKLSVGVASVLIGTLFFL 27 (27)
T ss_pred CCcccEEeEEccccchhHHHHHHHHhC
Confidence 44454444 44 889999998887763
No 29
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=46.13 E-value=20 Score=33.89 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.9
Q ss_pred CCCccccc----ceeechhHHHHHHHHHHHHHhhccccc
Q 027189 1 MKGKAKRS----STKLGLPTALLLCSFFFLAGFYGSTFL 35 (227)
Q Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (227)
|.+|.|+. +..+..-.|+++|++.|++|.+.++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~ 39 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRM 39 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 55565554 346666779999999999999886544
No 30
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism]
Probab=44.41 E-value=16 Score=33.24 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.2
Q ss_pred CCcceeccCCCCccccee
Q 027189 208 EGGETMFPFEVDLQISWL 225 (227)
Q Consensus 208 eGGeT~Fp~~~~~~~~~~ 225 (227)
.||+|+|.+++.+|+.-+
T Consensus 80 SGGGTVyHDlGNLN~S~l 97 (336)
T KOG3159|consen 80 SGGGTVYHDLGNLNYSLL 97 (336)
T ss_pred cCCceEEEecCceeEEEE
Confidence 799999999999998765
No 31
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.51 E-value=16 Score=29.69 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=18.6
Q ss_pred CCCcccccceeechhHHHHHHHHHHHHHhhcccc
Q 027189 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTF 34 (227)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (227)
|+.|.++..+.+.+-.+++.++.++++..+.+++
T Consensus 1 m~~~~~~rl~~~~~~~~~~~~~~~L~~~a~~~~~ 34 (148)
T PRK13254 1 MMKRKRRRLLIILGALAALGLAVALVLYALRQNI 34 (148)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5444444223444555566666666666666654
No 32
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=41.00 E-value=19 Score=31.61 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=22.9
Q ss_pred ccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceecc
Q 027189 177 DSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFP 215 (227)
Q Consensus 177 ~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp 215 (227)
.+|.|...... .-.+++|.-+.-..+||+|.|-
T Consensus 95 ~wHtD~sy~~~------pp~~~~L~~~~~p~~GG~T~fa 127 (277)
T PRK09553 95 NWHTDVTFIET------PPLGAILAAKQLPSTGGDTLWA 127 (277)
T ss_pred CCeecccCeeC------CCceeEEEEEecCCCCCccHhh
Confidence 49999865431 1236666667777899999994
No 33
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=39.98 E-value=1.1e+02 Score=25.92 Aligned_cols=58 Identities=26% Similarity=0.157 Sum_probs=40.3
Q ss_pred ceeecceeEecCCCChHHHHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCC
Q 027189 125 GTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFN 184 (227)
Q Consensus 125 ~~RtS~~~~l~~~ed~~~v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~ 184 (227)
.+|.+....+...-. +.+-.+...+...+|.+....|..-+.+|.+|+.-.+|.|--.
T Consensus 70 gy~y~~~~p~~~~p~--p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e 127 (194)
T COG3145 70 GYRYSLRSPLTGKPW--PPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDE 127 (194)
T ss_pred cccccccccCCCCCC--CccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccc
Confidence 345554443332211 2344556667778899888888999999999999999999754
No 34
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=36.82 E-value=12 Score=29.37 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=0.4
Q ss_pred CCCcccccceeechhHHHHHHHHHHHHHhhccc
Q 027189 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGST 33 (227)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (227)
||.|+||-+ .+.+-.++++++.++++..+.++
T Consensus 1 ~~~~~~rl~-~~~~~~~~i~~~~~l~~~~~~~~ 32 (131)
T PF03100_consen 1 MKRRKKRLI-LVVLGLVIIAAAIYLILYSFSDS 32 (131)
T ss_dssp --------------------------------S
T ss_pred CCcceeehh-hHHHHHHHHHHHHHHHHHHhhcc
Confidence 677666522 33334445555555655555544
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.95 E-value=36 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHhhccc
Q 027189 13 GLPTALLLCSFFFLAGFYGST 33 (227)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (227)
.|-+||++|+|++|++++.-+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 344566666666655554433
No 36
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=33.63 E-value=57 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=24.6
Q ss_pred cEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189 166 NVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV 218 (227)
Q Consensus 166 qv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 218 (227)
.+..|..|++-.+|.= .+..+|.++||+..++.|.+.|.+-+
T Consensus 3 W~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~ 44 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPR 44 (101)
T ss_dssp EEEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TT
T ss_pred eEEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCC
Confidence 3456788888888842 23469999999988888888886543
No 37
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=28.31 E-value=65 Score=29.51 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=24.4
Q ss_pred CcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 175 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 175 ~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
...+|+|...... .--+++|.-+....+||+|.|-+
T Consensus 186 ~l~~HtD~~y~~~------pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRDH------PPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccCC------CCceeeeeecccCCCCcceeeee
Confidence 4569999754321 11266777777788999999954
No 38
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=28.05 E-value=2.2e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=33.2
Q ss_pred CccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceecc
Q 027189 162 GEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFP 215 (227)
Q Consensus 162 ~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp 215 (227)
.....+.++.+|++-..|.= .+..+|-.+||+-...+|...|-
T Consensus 95 i~~~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~ 137 (201)
T TIGR02466 95 IQKAWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFE 137 (201)
T ss_pred EeeEeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEe
Confidence 35677888999998888841 23469999999988888888874
No 39
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=26.42 E-value=82 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 174 QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 174 ~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
....+|+|...... .--+++|.-+....+||+|.|-+
T Consensus 94 ~~l~~HtD~~y~~~------pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHEY------RPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCCC------CCceEEEEEeccCCCCCcceeee
Confidence 56669999864331 12356777777778899999965
No 40
>PLN00139 hypothetical protein; Provisional
Probab=25.93 E-value=84 Score=28.55 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 174 QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 174 ~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
+...+|.|...... .-..++|.-+.-..+||+|.|-+
T Consensus 111 ~~i~~H~E~sy~~~------pP~~~~f~C~~~p~~GGeT~~aD 147 (320)
T PLN00139 111 EFIYYHHEMVLIKE------SPKKVILFCEIPPPEGGQTPFVP 147 (320)
T ss_pred ccccccccccCccC------CCceEEEEecccCCCCCCCeeec
Confidence 34579999865432 12355555566678999999854
No 41
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=25.78 E-value=18 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=22.2
Q ss_pred ceeechhHHHHHHHHHHHHHhhccc
Q 027189 9 STKLGLPTALLLCSFFFLAGFYGST 33 (227)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (227)
.+++|+..++.+|+-++++|++.|-
T Consensus 34 ~~~fgl~~v~~vvip~l~~Ga~isk 58 (79)
T PF10161_consen 34 KMPFGLLRVLAVVIPGLYLGATISK 58 (79)
T ss_pred cccchhheeeeeeccHHHHHHHHHH
Confidence 4589999999999999999998875
No 42
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.76 E-value=76 Score=18.00 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 027189 16 TALLLCSFFFLAG 28 (227)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (227)
.+|+++.+|.|+|
T Consensus 10 il~~l~a~~~Lag 22 (25)
T PF08139_consen 10 ILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666677776
No 43
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=23.71 E-value=34 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.3
Q ss_pred ecCCCCHHHHHHHHH
Q 027189 87 FPNFASAEQCQSIIA 101 (227)
Q Consensus 87 i~nfLs~~EC~~Li~ 101 (227)
-++|+|.+||+.|..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 368899999998875
No 44
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.70 E-value=74 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhhcccccc
Q 027189 14 LPTALLLCSFFFLAGFYGSTFLS 36 (227)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~ 36 (227)
++.+.|++++||.+|+..--.++
T Consensus 7 iQii~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRWLP 29 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhH
Confidence 56778888888999998877654
No 45
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=1.4e+02 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=22.6
Q ss_pred HhcCCCCCCCccccEEEcC-CCCCcccccCCCCC
Q 027189 153 RATMLPQTHGEAFNVLRYE-IGQKYDSHYDAFNP 185 (227)
Q Consensus 153 ~~tglp~~~~E~lqv~rY~-~G~~Y~~H~D~~~~ 185 (227)
.+--+|.-....+-|. |. +||-|++|+|..+.
T Consensus 109 ~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YDV 141 (383)
T COG2850 109 PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYDV 141 (383)
T ss_pred HhccCccccccceEEE-EecCCCccCccccchhe
Confidence 4444665556666666 65 69999999998654
No 46
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.68 E-value=49 Score=27.27 Aligned_cols=34 Identities=12% Similarity=-0.141 Sum_probs=16.5
Q ss_pred CCCcccccceeechhHHHHHHHHHHHHHhhcccc
Q 027189 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTF 34 (227)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (227)
|+.|.++.-+-+.+-.+.+++..++++.++.+++
T Consensus 1 M~~~r~rRl~~v~~~~~~~~~a~~Lvl~al~~n~ 34 (159)
T PRK13150 1 MNLRRKNRLWVVCAVLAGLGLTTALVLYALRANI 34 (159)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 6554443111334444445555666666565554
No 47
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=22.47 E-value=60 Score=27.22 Aligned_cols=36 Identities=31% Similarity=0.181 Sum_probs=22.6
Q ss_pred CcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccC
Q 027189 175 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPF 216 (227)
Q Consensus 175 ~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 216 (227)
...+|+|..... ..--+.+|.-+.....||+|.|-.
T Consensus 96 ~l~~HtD~~~~~------~~p~~~~L~c~~~~~~GG~T~~~d 131 (258)
T PF02668_consen 96 ELPWHTDGSYWP------YPPDYLALYCLRPAEEGGETTFAD 131 (258)
T ss_dssp GEEEE-TTTTST------TEESEEEEEEEEEESSSSEEEEEE
T ss_pred ccccccccCccc------CCcceeEEEeeccCCCCCcccccc
Confidence 477999986432 122245555566667999999854
No 48
>PHA02577 2 DNA end protector protein; Provisional
Probab=22.28 E-value=61 Score=27.06 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=38.1
Q ss_pred ccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189 163 EAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV 218 (227)
Q Consensus 163 E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 218 (227)
..-|++|+.+|--|..-||.-..++. .--=..-+++|||.....|.|.|.-+|
T Consensus 33 r~h~v~kp~~Grly~F~YdAk~KdtL---pywDrfPLI~flg~~~~~g~~l~~GLN 85 (181)
T PHA02577 33 RGHQVVKPQPGRLYTFEYDAKHKDTL---PYWDRFPLIIFLGSGQSKAHTLMYGLN 85 (181)
T ss_pred cccccccCcCceEEEEEecccccCcc---cccccCcEEEEEecCCCCCcceEeeee
Confidence 45699999999988888887543321 112236789999999877889887665
No 49
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.46 E-value=69 Score=21.03 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 027189 16 TALLLCSFFF 25 (227)
Q Consensus 16 ~~~~~~~~~~ 25 (227)
.-|++|+|.+
T Consensus 13 F~~lIC~Fl~ 22 (54)
T PF06716_consen 13 FGFLICLFLF 22 (54)
T ss_pred HHHHHHHHHH
Confidence 3344555444
No 50
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=20.51 E-value=64 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCCccc-ccceeechhHHHHHHHHHHHHHhhccccccCC
Q 027189 1 MKGKAK-RSSTKLGLPTALLLCSFFFLAGFYGSTFLSRD 38 (227)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (227)
||.+++ ++.++...-++.+.+++|++.|.+|...|.++
T Consensus 218 m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 256 (409)
T PF01490_consen 218 MKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS 256 (409)
T ss_pred ccCCccccccceeeeehhhhhhHHhhhhhhcccceeeee
Confidence 666655 43447777788888889999999998887654
No 51
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.10 E-value=1.1e+02 Score=20.84 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=14.8
Q ss_pred eechhHHHHHHHHHHHHHhhcc
Q 027189 11 KLGLPTALLLCSFFFLAGFYGS 32 (227)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (227)
-++.-.++++|+.|++.-+++.
T Consensus 13 ~~~~lLiliis~~f~lI~~l~q 34 (61)
T PF06692_consen 13 YSGPLLILIISFVFFLITSLGQ 34 (61)
T ss_pred chhHHHHHHHHHHHHHHhhhcc
Confidence 4566677777888877655543
No 52
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=20.03 E-value=97 Score=22.27 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=15.5
Q ss_pred echhHHHHHHHHHHHHHhh
Q 027189 12 LGLPTALLLCSFFFLAGFY 30 (227)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (227)
++--|.++.|+-|++.|+.
T Consensus 47 lnQlYTl~FClWFLlLGai 65 (82)
T PF06643_consen 47 LNQLYTLVFCLWFLLLGAI 65 (82)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 4456889999999999975
No 53
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=20.01 E-value=74 Score=26.14 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=14.1
Q ss_pred HHHhcCCCCCC-CccccEEEcCCCCCcc
Q 027189 151 IARATMLPQTH-GEAFNVLRYEIGQKYD 177 (227)
Q Consensus 151 i~~~tglp~~~-~E~lqv~rY~~G~~Y~ 177 (227)
+.+--++|... ...+.|.=+.-|+-|.
T Consensus 67 l~~KY~ip~~~~~g~f~V~iw~fG~GY~ 94 (157)
T PF06092_consen 67 LKEKYNIPEPDSDGWFTVTIWDFGDGYK 94 (157)
T ss_pred HHHhcCCCCCCCCCCEEEEEEEcCCCeE
Confidence 44444555433 3455665556665555
Done!