Query 027190
Match_columns 227
No_of_seqs 217 out of 1574
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 3.8E-40 8.2E-45 273.1 5.0 160 1-160 1-188 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 6.9E-35 1.5E-39 207.7 4.1 73 2-74 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.3E-31 2.8E-36 193.5 5.5 74 2-75 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 4.3E-31 9.2E-36 178.1 4.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 2.3E-30 5E-35 174.7 4.0 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 9.1E-29 2E-33 161.7 0.8 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 4.5E-19 9.8E-24 132.5 11.7 90 83-172 11-100 (100)
8 KOG0015 Regulator of arginine 99.8 1.5E-20 3.3E-25 160.9 2.6 66 2-67 63-128 (338)
9 COG5068 ARG80 Regulator of arg 99.5 7.2E-15 1.6E-19 131.4 3.5 68 1-68 81-148 (412)
10 PF06005 DUF904: Protein of un 91.8 2.1 4.5E-05 29.9 8.2 47 118-169 1-47 (72)
11 PF10584 Proteasome_A_N: Prote 87.6 0.085 1.8E-06 28.6 -1.2 13 44-56 4-16 (23)
12 PRK04098 sec-independent trans 87.5 0.19 4.1E-06 40.4 0.2 29 43-73 15-43 (158)
13 PF01166 TSC22: TSC-22/dip/bun 85.7 2.2 4.8E-05 28.5 4.5 29 142-170 16-44 (59)
14 PF06156 DUF972: Protein of un 85.1 7.6 0.00017 29.2 7.9 51 120-175 7-57 (107)
15 PRK10884 SH3 domain-containing 84.4 17 0.00037 30.6 10.5 75 91-170 93-169 (206)
16 PRK13169 DNA replication intia 84.2 8.9 0.00019 29.0 7.9 49 120-173 7-55 (110)
17 cd07429 Cby_like Chibby, a nuc 82.8 2.5 5.4E-05 31.9 4.4 25 149-173 74-98 (108)
18 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.7 20 0.00043 27.7 10.3 35 139-173 97-131 (132)
19 PRK15422 septal ring assembly 82.1 15 0.00033 26.0 7.8 36 118-158 1-36 (79)
20 COG3074 Uncharacterized protei 80.6 14 0.0003 25.6 6.9 49 118-171 1-49 (79)
21 cd00187 TOP4c DNA Topoisomeras 79.6 13 0.00028 34.9 8.9 60 7-72 257-327 (445)
22 PF06698 DUF1192: Protein of u 76.8 6.7 0.00015 26.3 4.5 31 109-139 12-42 (59)
23 COG2433 Uncharacterized conser 75.0 38 0.00083 33.0 10.6 72 93-173 431-507 (652)
24 PHA02592 52 DNA topisomerase I 74.8 36 0.00078 32.0 10.3 42 26-72 285-326 (439)
25 TIGR02449 conserved hypothetic 73.8 26 0.00056 24.0 7.8 44 122-170 1-44 (65)
26 smart00338 BRLZ basic region l 73.6 18 0.00038 24.2 6.1 36 135-174 18-53 (65)
27 PF07716 bZIP_2: Basic region 72.7 23 0.00049 22.9 6.3 36 135-174 17-52 (54)
28 cd00632 Prefoldin_beta Prefold 72.3 17 0.00037 26.8 6.3 31 143-173 73-103 (105)
29 PF06005 DUF904: Protein of un 71.9 18 0.0004 25.1 5.9 37 139-175 10-46 (72)
30 KOG4797 Transcriptional regula 71.7 32 0.00069 25.9 7.4 33 136-169 64-96 (123)
31 TIGR02338 gimC_beta prefoldin, 71.2 20 0.00044 26.7 6.5 46 127-173 62-107 (110)
32 PF08317 Spc7: Spc7 kinetochor 70.9 21 0.00046 31.9 7.7 61 113-173 201-263 (325)
33 PF06156 DUF972: Protein of un 70.7 15 0.00033 27.6 5.6 36 140-175 15-50 (107)
34 PRK00888 ftsB cell division pr 69.0 18 0.00038 27.0 5.7 35 142-176 29-63 (105)
35 PF00170 bZIP_1: bZIP transcri 68.6 29 0.00063 23.1 6.3 35 135-173 18-52 (64)
36 smart00787 Spc7 Spc7 kinetocho 67.5 91 0.002 27.9 10.9 75 99-173 180-258 (312)
37 PF04880 NUDE_C: NUDE protein, 66.6 12 0.00025 30.5 4.6 43 123-170 2-47 (166)
38 PF05529 Bap31: B-cell recepto 65.7 40 0.00087 27.5 7.8 54 121-174 125-188 (192)
39 PRK10884 SH3 domain-containing 64.7 51 0.0011 27.6 8.3 16 95-110 90-105 (206)
40 PF10226 DUF2216: Uncharacteri 64.4 26 0.00055 29.1 6.2 30 139-168 47-76 (195)
41 PF04977 DivIC: Septum formati 64.2 25 0.00054 24.0 5.5 34 144-177 21-54 (80)
42 PRK01919 tatB sec-independent 64.1 5.2 0.00011 32.5 2.1 28 43-72 15-42 (169)
43 PF02183 HALZ: Homeobox associ 62.8 36 0.00078 21.4 5.4 35 140-174 5-39 (45)
44 PRK13169 DNA replication intia 62.5 22 0.00049 26.8 5.2 34 140-173 15-48 (110)
45 COG4467 Regulator of replicati 60.3 64 0.0014 24.3 7.1 48 120-172 7-54 (114)
46 PF10504 DUF2452: Protein of u 59.5 64 0.0014 26.0 7.5 45 119-163 28-75 (159)
47 PRK15422 septal ring assembly 58.0 41 0.0009 23.8 5.5 37 139-175 10-46 (79)
48 PF13870 DUF4201: Domain of un 57.6 99 0.0021 24.8 11.8 79 92-173 14-103 (177)
49 KOG1962 B-cell receptor-associ 56.8 46 0.00099 28.2 6.6 53 120-172 157-211 (216)
50 PF09941 DUF2173: Uncharacteri 56.2 9 0.0002 28.9 2.1 37 32-69 3-42 (108)
51 KOG0250 DNA repair protein RAD 54.4 1.9E+02 0.004 30.4 11.4 18 44-61 621-638 (1074)
52 PF07106 TBPIP: Tat binding pr 54.1 59 0.0013 26.0 6.7 11 44-54 46-56 (169)
53 PF15058 Speriolin_N: Sperioli 53.8 32 0.00069 28.6 5.1 36 141-177 13-48 (200)
54 smart00340 HALZ homeobox assoc 53.4 31 0.00068 21.5 3.7 29 149-177 7-35 (44)
55 TIGR02209 ftsL_broad cell divi 53.2 50 0.0011 23.0 5.5 34 142-175 26-59 (85)
56 KOG4797 Transcriptional regula 53.0 74 0.0016 24.0 6.4 40 129-171 49-91 (123)
57 smart00338 BRLZ basic region l 52.5 52 0.0011 21.9 5.2 29 142-170 35-63 (65)
58 KOG0930 Guanine nucleotide exc 52.3 49 0.0011 29.4 6.2 44 114-166 7-50 (395)
59 PRK13729 conjugal transfer pil 51.5 63 0.0014 30.6 7.2 31 143-173 93-123 (475)
60 PF14645 Chibby: Chibby family 51.3 30 0.00065 26.3 4.3 25 148-172 72-96 (116)
61 cd04769 HTH_MerR2 Helix-Turn-H 50.9 73 0.0016 23.8 6.4 42 116-157 55-103 (116)
62 PRK11637 AmiB activator; Provi 50.8 2.1E+02 0.0045 26.5 11.6 50 121-170 75-126 (428)
63 PRK04654 sec-independent trans 50.7 1.7 3.6E-05 36.6 -2.9 27 43-71 15-41 (214)
64 COG1382 GimC Prefoldin, chaper 47.6 1E+02 0.0022 23.7 6.6 33 143-175 80-112 (119)
65 PF14009 DUF4228: Domain of un 47.6 18 0.0004 28.5 2.8 32 40-72 14-46 (181)
66 PF09278 MerR-DNA-bind: MerR, 47.2 79 0.0017 20.6 6.4 12 116-127 13-24 (65)
67 KOG0971 Microtubule-associated 45.7 3.3E+02 0.0071 28.4 11.3 28 112-139 359-389 (1243)
68 PF03980 Nnf1: Nnf1 ; InterPr 45.7 87 0.0019 23.1 6.0 48 114-174 60-107 (109)
69 PF14282 FlxA: FlxA-like prote 45.6 1.2E+02 0.0027 22.4 8.5 56 91-163 19-74 (106)
70 TIGR02449 conserved hypothetic 45.6 74 0.0016 21.7 5.1 31 145-175 5-35 (65)
71 TIGR03752 conj_TIGR03752 integ 45.3 2.7E+02 0.0058 26.5 10.3 45 126-174 99-143 (472)
72 TIGR02894 DNA_bind_RsfA transc 43.7 1.7E+02 0.0038 23.6 11.8 60 115-174 77-138 (161)
73 PF15397 DUF4618: Domain of un 43.4 1.1E+02 0.0024 26.7 7.0 39 139-177 185-223 (258)
74 PF04999 FtsL: Cell division p 43.3 82 0.0018 22.6 5.5 34 142-175 37-70 (97)
75 KOG0709 CREB/ATF family transc 42.7 27 0.00059 32.8 3.4 24 116-139 232-255 (472)
76 cd01109 HTH_YyaN Helix-Turn-He 42.6 1.4E+02 0.0029 22.1 7.0 53 117-170 57-109 (113)
77 PF07888 CALCOCO1: Calcium bin 41.6 3.4E+02 0.0074 26.4 11.7 25 146-170 212-236 (546)
78 PRK05561 DNA topoisomerase IV 41.5 1.4E+02 0.0029 30.1 8.3 39 124-162 421-459 (742)
79 TIGR01478 STEVOR variant surfa 41.4 37 0.00079 30.0 3.8 44 7-71 25-69 (295)
80 PLN03128 DNA topoisomerase 2; 41.4 2.2E+02 0.0048 30.2 10.0 27 44-72 961-987 (1135)
81 COG4026 Uncharacterized protei 40.7 2.4E+02 0.0051 24.3 10.1 10 112-121 97-106 (290)
82 PF08946 Osmo_CC: Osmosensory 40.2 78 0.0017 20.0 4.1 25 138-162 17-41 (46)
83 PF10623 PilI: Plasmid conjuga 40.0 33 0.00072 24.3 2.7 30 42-71 8-40 (83)
84 PRK11637 AmiB activator; Provi 40.0 3E+02 0.0066 25.3 11.0 18 144-161 107-124 (428)
85 COG4917 EutP Ethanolamine util 39.1 22 0.00048 27.9 1.9 25 34-58 58-82 (148)
86 TIGR03545 conserved hypothetic 38.6 2.1E+02 0.0046 27.7 8.9 32 25-57 88-121 (555)
87 PF11365 DUF3166: Protein of u 38.2 1.3E+02 0.0028 22.2 5.7 34 142-175 10-43 (96)
88 PF07407 Seadorna_VP6: Seadorn 38.0 99 0.0021 28.0 6.0 42 112-167 23-64 (420)
89 COG0216 PrfA Protein chain rel 37.9 2.7E+02 0.0059 25.4 8.7 91 61-166 8-102 (363)
90 PF09789 DUF2353: Uncharacteri 37.7 3.1E+02 0.0067 24.7 9.7 42 134-176 74-115 (319)
91 smart00434 TOP4c DNA Topoisome 37.6 3.2E+02 0.0069 25.7 9.7 32 125-156 400-431 (445)
92 COG4467 Regulator of replicati 37.3 80 0.0017 23.8 4.5 31 144-174 19-49 (114)
93 KOG4637 Adaptor for phosphoino 37.2 22 0.00049 32.6 1.9 40 33-72 367-411 (464)
94 KOG0183 20S proteasome, regula 37.2 19 0.0004 30.6 1.3 18 41-58 4-23 (249)
95 PF04899 MbeD_MobD: MbeD/MobD 36.5 1.4E+02 0.0031 20.6 7.7 49 125-173 3-54 (70)
96 PRK09413 IS2 repressor TnpA; R 36.1 1E+02 0.0023 23.1 5.3 28 145-172 76-103 (121)
97 COG4831 Roadblock/LC7 domain [ 35.5 21 0.00045 26.4 1.2 30 30-60 3-32 (109)
98 TIGR02051 MerR Hg(II)-responsi 35.4 1.6E+02 0.0034 22.3 6.2 53 116-171 55-107 (124)
99 PF04849 HAP1_N: HAP1 N-termin 35.4 58 0.0013 29.1 4.2 28 149-176 162-189 (306)
100 TIGR01062 parC_Gneg DNA topois 35.2 2.2E+02 0.0047 28.7 8.5 41 119-160 404-444 (735)
101 cd01106 HTH_TipAL-Mta Helix-Tu 34.8 1.6E+02 0.0034 21.3 5.9 15 117-131 57-71 (103)
102 PRK14127 cell division protein 34.5 1.1E+02 0.0023 23.1 4.9 48 113-175 18-65 (109)
103 PF15066 CAGE1: Cancer-associa 34.3 2.5E+02 0.0053 26.8 8.1 13 33-45 254-266 (527)
104 COG3074 Uncharacterized protei 34.1 1.6E+02 0.0035 20.4 5.3 26 144-169 36-61 (79)
105 cd04787 HTH_HMRTR_unk Helix-Tu 34.0 2.1E+02 0.0046 21.8 7.2 57 116-173 56-112 (133)
106 KOG0184 20S proteasome, regula 33.1 23 0.0005 30.2 1.2 24 36-59 3-28 (254)
107 TIGR01950 SoxR redox-sensitive 33.0 1.7E+02 0.0036 22.9 6.1 56 116-171 56-111 (142)
108 PF10224 DUF2205: Predicted co 32.9 1.8E+02 0.0039 20.6 6.7 41 122-174 24-64 (80)
109 cd04790 HTH_Cfa-like_unk Helix 32.8 1.4E+02 0.0031 24.0 5.8 48 116-170 57-104 (172)
110 cd04770 HTH_HMRTR Helix-Turn-H 32.2 2.1E+02 0.0046 21.2 7.3 54 116-170 56-109 (123)
111 PF09151 DUF1936: Domain of un 32.1 40 0.00088 19.6 1.8 23 35-57 3-25 (36)
112 PF01093 Clusterin: Clusterin; 31.8 1.6E+02 0.0034 27.8 6.5 12 126-137 14-25 (436)
113 COG0139 HisI Phosphoribosyl-AM 31.6 15 0.00032 27.8 -0.2 37 17-53 50-95 (111)
114 smart00030 CLb CLUSTERIN Beta 31.5 2.1E+02 0.0046 24.0 6.6 12 126-137 20-31 (206)
115 cd04776 HTH_GnyR Helix-Turn-He 31.5 2.2E+02 0.0048 21.3 7.3 57 116-172 54-112 (118)
116 cd04783 HTH_MerR1 Helix-Turn-H 31.4 2E+02 0.0043 21.6 6.2 53 116-171 56-108 (126)
117 PF09158 MotCF: Bacteriophage 31.3 13 0.00028 27.8 -0.5 53 5-72 19-72 (103)
118 PF12709 Kinetocho_Slk19: Cent 31.1 2.1E+02 0.0045 20.8 8.2 30 145-174 47-76 (87)
119 TIGR02047 CadR-PbrR Cd(II)/Pb( 31.1 2.2E+02 0.0047 21.6 6.4 54 116-170 56-109 (127)
120 PRK10227 DNA-binding transcrip 30.7 2.5E+02 0.0055 21.6 6.9 55 116-171 56-110 (135)
121 PF07558 Shugoshin_N: Shugoshi 30.6 70 0.0015 20.1 2.9 31 140-170 14-44 (46)
122 cd01282 HTH_MerR-like_sg3 Heli 30.3 2.3E+02 0.0049 20.9 6.4 52 116-167 55-108 (112)
123 KOG3119 Basic region leucine z 30.1 2.3E+02 0.005 24.6 7.1 27 150-176 218-244 (269)
124 KOG4005 Transcription factor X 30.0 3.5E+02 0.0075 23.5 7.7 12 49-60 30-41 (292)
125 PRK09514 zntR zinc-responsive 29.9 2.6E+02 0.0057 21.6 6.8 56 116-171 57-112 (140)
126 PRK09343 prefoldin subunit bet 29.5 2.2E+02 0.0048 21.5 6.1 32 143-174 81-112 (121)
127 KOG0804 Cytoplasmic Zn-finger 29.3 2.4E+02 0.0051 26.7 7.1 34 135-168 377-410 (493)
128 PF04566 RNA_pol_Rpb2_4: RNA p 29.2 17 0.00036 24.6 -0.2 31 22-54 23-54 (63)
129 COG5068 ARG80 Regulator of arg 29.2 29 0.00063 32.1 1.3 58 8-71 18-76 (412)
130 TIGR02043 ZntR Zn(II)-responsi 28.9 2.6E+02 0.0057 21.3 6.8 56 116-171 57-112 (131)
131 PF07889 DUF1664: Protein of u 28.9 2.7E+02 0.0059 21.5 7.5 22 149-170 98-119 (126)
132 PF07676 PD40: WD40-like Beta 28.9 39 0.00085 19.6 1.5 18 42-59 10-27 (39)
133 PF00170 bZIP_1: bZIP transcri 28.3 1.8E+02 0.0039 19.1 5.7 22 148-169 41-62 (64)
134 cd02980 TRX_Fd_family Thioredo 28.3 57 0.0012 21.9 2.4 30 39-69 47-77 (77)
135 KOG4252 GTP-binding protein [S 27.9 2.7E+02 0.0058 23.3 6.5 28 39-72 91-118 (246)
136 PRK15002 redox-sensitivie tran 27.8 2.5E+02 0.0054 22.3 6.4 55 116-170 66-120 (154)
137 cd04784 HTH_CadR-PbrR Helix-Tu 27.8 2.7E+02 0.0057 20.9 7.5 53 117-170 57-109 (127)
138 cd01107 HTH_BmrR Helix-Turn-He 27.4 2.5E+02 0.0054 20.5 6.3 48 116-169 57-104 (108)
139 PRK10803 tol-pal system protei 27.3 3.1E+02 0.0066 23.7 7.3 23 149-171 77-99 (263)
140 cd04777 HTH_MerR-like_sg1 Heli 27.0 2E+02 0.0043 20.9 5.4 12 117-128 55-66 (107)
141 cd04788 HTH_NolA-AlbR Helix-Tu 26.3 1.4E+02 0.003 21.4 4.3 13 116-128 56-68 (96)
142 KOG4643 Uncharacterized coiled 26.3 1.6E+02 0.0034 30.7 5.9 49 130-178 283-332 (1195)
143 PRK14860 tatA twin arginine tr 26.0 10 0.00023 25.8 -1.6 37 34-74 8-44 (64)
144 PF13514 AAA_27: AAA domain 26.0 2E+02 0.0043 30.3 6.8 126 47-177 142-279 (1111)
145 PF08614 ATG16: Autophagy prot 25.8 3.7E+02 0.0079 21.9 10.3 23 148-170 159-181 (194)
146 cd04768 HTH_BmrR-like Helix-Tu 25.8 1.7E+02 0.0036 21.0 4.6 13 116-128 56-68 (96)
147 PF02416 MttA_Hcf106: mttA/Hcf 25.6 5.7 0.00012 25.9 -2.9 29 43-73 12-40 (53)
148 KOG3612 PHD Zn-finger protein 25.1 4E+02 0.0087 25.9 8.0 72 33-108 402-477 (588)
149 PF09403 FadA: Adhesion protei 25.1 3.2E+02 0.007 21.1 8.2 16 57-72 17-32 (126)
150 PF11629 Mst1_SARAH: C termina 25.0 1.6E+02 0.0034 19.0 3.7 18 115-132 5-22 (49)
151 PF05082 Rop-like: Rop-like; 24.7 2E+02 0.0044 19.7 4.5 31 146-176 1-31 (66)
152 PF15058 Speriolin_N: Sperioli 24.7 1.1E+02 0.0023 25.6 3.7 26 149-174 7-32 (200)
153 TIGR02044 CueR Cu(I)-responsiv 24.6 3.1E+02 0.0067 20.6 6.9 55 116-171 56-110 (127)
154 PF07798 DUF1640: Protein of u 24.5 3.7E+02 0.0081 21.6 8.2 19 121-139 47-65 (177)
155 PF15619 Lebercilin: Ciliary p 24.4 4.1E+02 0.0089 22.0 10.3 22 151-172 168-189 (194)
156 PLN02372 violaxanthin de-epoxi 24.4 6E+02 0.013 23.9 11.9 26 120-145 378-403 (455)
157 PRK09039 hypothetical protein; 24.2 5.3E+02 0.012 23.2 9.0 33 123-160 153-185 (343)
158 KOG0963 Transcription factor/C 23.9 5.6E+02 0.012 25.3 8.8 81 93-173 123-208 (629)
159 PHA01750 hypothetical protein 23.8 2.5E+02 0.0054 19.3 7.2 11 145-155 61-71 (75)
160 PF09798 LCD1: DNA damage chec 23.8 4.5E+02 0.0097 26.2 8.3 54 122-175 5-61 (654)
161 cd04779 HTH_MerR-like_sg4 Heli 23.7 3.5E+02 0.0075 20.9 8.0 53 116-168 55-109 (134)
162 PF02151 UVR: UvrB/uvrC motif; 23.7 1.6E+02 0.0036 17.2 4.3 33 122-154 3-35 (36)
163 cd01108 HTH_CueR Helix-Turn-He 23.6 3.3E+02 0.007 20.5 7.6 54 116-170 56-109 (127)
164 cd04785 HTH_CadR-PbrR-like Hel 23.6 3.2E+02 0.007 20.5 7.1 56 116-172 56-111 (126)
165 TIGR01411 tatAE twin arginine- 23.6 8.6 0.00019 24.5 -2.3 28 43-72 13-40 (47)
166 PRK13752 putative transcriptio 23.6 3E+02 0.0065 21.5 6.0 54 116-172 63-116 (144)
167 cd04775 HTH_Cfa-like Helix-Tur 23.5 2.4E+02 0.0052 20.4 5.2 12 116-127 56-67 (102)
168 PF15619 Lebercilin: Ciliary p 23.4 2.3E+02 0.005 23.5 5.6 33 137-169 9-41 (194)
169 COG2919 Septum formation initi 23.3 2.1E+02 0.0045 21.6 4.9 31 146-176 56-86 (117)
170 cd01110 HTH_SoxR Helix-Turn-He 22.8 3.6E+02 0.0078 20.8 6.5 56 116-171 56-111 (139)
171 cd04786 HTH_MerR-like_sg7 Heli 22.8 3.5E+02 0.0077 20.7 6.8 57 116-174 56-112 (131)
172 PF14775 NYD-SP28_assoc: Sperm 22.8 2.4E+02 0.0052 18.7 5.4 27 145-171 31-57 (60)
173 PRK13922 rod shape-determining 22.5 2E+02 0.0043 24.8 5.3 15 158-172 97-111 (276)
174 PF11184 DUF2969: Protein of u 22.5 65 0.0014 22.3 1.8 62 1-71 1-70 (71)
175 PTZ00108 DNA topoisomerase 2-l 22.4 1.5E+02 0.0033 32.1 5.1 106 45-160 963-1122(1388)
176 PF14662 CCDC155: Coiled-coil 22.3 4.6E+02 0.01 21.8 9.7 12 121-132 70-81 (193)
177 PF05377 FlaC_arch: Flagella a 22.3 2.4E+02 0.0052 18.6 4.6 7 147-153 28-34 (55)
178 cd03064 TRX_Fd_NuoE TRX-like [ 22.0 73 0.0016 21.9 2.0 29 38-69 51-80 (80)
179 PF05325 DUF730: Protein of un 21.9 63 0.0014 23.9 1.7 25 35-60 19-48 (122)
180 PTZ00370 STEVOR; Provisional 21.9 1.2E+02 0.0025 27.0 3.6 42 8-71 26-68 (296)
181 KOG4673 Transcription factor T 21.8 7.2E+02 0.016 25.1 9.1 32 139-170 604-635 (961)
182 PF10079 DUF2317: Uncharacteri 21.8 6.3E+02 0.014 24.5 8.9 60 120-179 439-499 (542)
183 PF01502 PRA-CH: Phosphoribosy 21.7 20 0.00043 25.3 -1.0 37 17-53 18-63 (75)
184 PF15254 CCDC14: Coiled-coil d 21.3 8.9E+02 0.019 24.8 10.8 26 84-109 387-412 (861)
185 PF12018 DUF3508: Domain of un 21.2 37 0.0008 29.8 0.4 33 19-61 210-242 (281)
186 PF06785 UPF0242: Uncharacteri 21.2 4.9E+02 0.011 23.8 7.4 41 130-171 132-172 (401)
187 PF15070 GOLGA2L5: Putative go 21.1 2.9E+02 0.0063 27.2 6.5 18 89-106 85-102 (617)
188 KOG4643 Uncharacterized coiled 21.0 3.8E+02 0.0083 28.1 7.3 36 139-174 307-342 (1195)
189 PF00383 dCMP_cyt_deam_1: Cyti 20.9 96 0.0021 22.0 2.5 30 28-57 7-40 (102)
190 PF04849 HAP1_N: HAP1 N-termin 20.7 5.6E+02 0.012 23.0 7.7 29 145-173 239-267 (306)
191 PF05557 MAD: Mitotic checkpoi 20.7 2.1E+02 0.0045 28.5 5.6 22 155-176 567-588 (722)
192 COG5420 Uncharacterized conser 20.7 2.3E+02 0.0051 19.3 4.1 34 143-176 2-35 (71)
193 KOG0182 20S proteasome, regula 20.5 62 0.0013 27.5 1.5 17 40-56 8-24 (246)
194 PF04508 Pox_A_type_inc: Viral 20.5 1.1E+02 0.0024 16.5 2.0 15 93-107 3-17 (23)
195 PF07888 CALCOCO1: Calcium bin 20.4 8E+02 0.017 23.9 10.3 29 31-60 78-113 (546)
196 TIGR01063 gyrA DNA gyrase, A s 20.3 5.7E+02 0.012 26.0 8.6 35 125-159 412-446 (800)
197 PRK13923 putative spore coat p 20.3 3.5E+02 0.0075 22.1 5.8 25 146-170 110-134 (170)
198 PF04728 LPP: Lipoprotein leuc 20.2 2.7E+02 0.0059 18.4 5.5 30 141-170 4-33 (56)
199 PF02887 PK_C: Pyruvate kinase 20.1 66 0.0014 23.8 1.6 22 31-53 7-28 (117)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=3.8e-40 Score=273.15 Aligned_cols=160 Identities=43% Similarity=0.595 Sum_probs=125.0
Q ss_pred CCccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCc--hhHHHhhhhcccccccc
Q 027190 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS--MKDIIARYNMHSSNISK 78 (227)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~s--m~~ileRY~~~s~~~~~ 78 (227)
|||+||+|+||+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++ |..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999986 99999999876543221
Q ss_pred CCCCchhH---------------------HhHHHHhhhhHHHHHHHh---hhhhhccCCCCCCCCH-HHHHHHHHHHHHH
Q 027190 79 LNHPSLEL---------------------QLENSKYLSLSREIADKS---RQLRQMRGEDLHGLTI-EELQHLETMLEQG 133 (227)
Q Consensus 79 ~~~~~~~~---------------------q~~~~e~~kLkkei~~l~---~~lR~l~GedL~~Lsl-~EL~~LE~~Le~~ 133 (227)
........ +........++...+.+. ...+++.|+++.+++. .+|..++.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 11110000 001122233444444443 3467899999999999 9999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027190 134 LSRVLQTKGDRIMNEIS-TLERKGAKLL 160 (227)
Q Consensus 134 L~~Vr~rK~q~l~~eI~-~L~~ke~~l~ 160 (227)
+..+|..+...+..++. .++.++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 99999999988888776 4444444443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=6.9e-35 Score=207.72 Aligned_cols=73 Identities=66% Similarity=0.958 Sum_probs=71.2
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcccc
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~s~ 74 (227)
||+||+|++|||+.+|+|||+||+.||||||+||||||||+||+|||||+|++|+|++|++++||+||...++
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.3e-31 Score=193.53 Aligned_cols=74 Identities=54% Similarity=0.842 Sum_probs=70.2
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCc-hhHHHhhhhccccc
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS-MKDIIARYNMHSSN 75 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~s-m~~ileRY~~~s~~ 75 (227)
||+||+|++|+|..+|+|||+||+.||||||+||||||||+||+|||||+|++|.|++++ +..+|+||...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL 75 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence 899999999999999999999999999999999999999999999999999999998876 99999999876543
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=4.3e-31 Score=178.15 Aligned_cols=59 Identities=69% Similarity=1.037 Sum_probs=58.0
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCC
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~ 60 (227)
||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999876
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=2.3e-30 Score=174.70 Aligned_cols=59 Identities=71% Similarity=1.026 Sum_probs=57.7
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCC
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~ 60 (227)
||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=9.1e-29 Score=161.69 Aligned_cols=51 Identities=55% Similarity=0.947 Sum_probs=47.1
Q ss_pred eeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCC
Q 027190 9 RKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS 59 (227)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s 59 (227)
|+|+|...|++||+|||.||||||+||||||||+||+|||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.80 E-value=4.5e-19 Score=132.49 Aligned_cols=90 Identities=34% Similarity=0.511 Sum_probs=84.8
Q ss_pred chhHHhHHHHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 83 SLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 162 (227)
Q Consensus 83 ~~~~q~~~~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~ee 162 (227)
....+.+..++++|+.+++.|+..+|+++|+||++|+++||++||++|+.||.+||++|.++|+++|..|++|+..|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027190 163 NKNLKQKVAS 172 (227)
Q Consensus 163 N~~L~~~~~~ 172 (227)
|..|+.++++
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999853
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.80 E-value=1.5e-20 Score=160.94 Aligned_cols=66 Identities=39% Similarity=0.587 Sum_probs=62.4
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHh
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIA 67 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ile 67 (227)
||.||+|++|||+..|+||||||+.||||||+|||||.|.+|-|+|.|.+|-+|.|+.+-++-||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999986665554
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.51 E-value=7.2e-15 Score=131.39 Aligned_cols=68 Identities=38% Similarity=0.530 Sum_probs=63.8
Q ss_pred CCccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhh
Q 027190 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIAR 68 (227)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileR 68 (227)
|||+||.|..|+|+.+|.|||+||+.||+|||+||+||.+.+|.|+|.|.+|+++.|+.|..+.|+.-
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999866666543
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.76 E-value=2.1 Score=29.92 Aligned_cols=47 Identities=30% Similarity=0.461 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
++++.|.+||..+..++..|..-+ .+|+.|+.+-..|.++|..|+..
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq-----~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ-----MENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH
Confidence 578889999999999988776533 45666666544444444444444
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=87.56 E-value=0.085 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=10.7
Q ss_pred EEEEecCCCCccc
Q 027190 44 GVIIFSATGKLFE 56 (227)
Q Consensus 44 alivfs~~gkl~~ 56 (227)
.+.+|||.|+||.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4568999999985
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=87.50 E-value=0.19 Score=40.42 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhccc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNMHS 73 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~~s 73 (227)
||||||+| +||++++ -.+.+.+..+++..
T Consensus 15 VaLlvfGP-~KLP~~~-r~lGk~ir~~K~~~ 43 (158)
T PRK04098 15 VAIIFLGP-DKLPQAM-VDIAKFFKAVKKTI 43 (158)
T ss_pred HHHhhcCc-hHHHHHH-HHHHHHHHHHHHHH
Confidence 68999999 5888776 45666666666543
No 13
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.66 E-value=2.2 Score=28.46 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.+.+.++|..|..+...|+.||..|+...
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778899999999999999999999874
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.14 E-value=7.6 Score=29.19 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
++.+.+||++|...+..|.+-|. ++..|-..-..|.-||..|+..+.....
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~-----~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKK-----QLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677888888877766665553 3455555556677778888888776544
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.40 E-value=17 Score=30.55 Aligned_cols=75 Identities=8% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVL--QTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 91 ~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr--~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
..+..+++++++++.++.++.++ .+ ....++.+.+..+-..+. ...++.+.+++..++.+...|..+|..++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~-~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT-WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777665432 11 233333333333222222 233334455555555555555555555554
Q ss_pred HH
Q 027190 169 KV 170 (227)
Q Consensus 169 ~~ 170 (227)
.+
T Consensus 168 ~~ 169 (206)
T PRK10884 168 TI 169 (206)
T ss_pred HH
Confidence 43
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.17 E-value=8.9 Score=29.01 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
++.+.+||+++...+..+.+-|. ++..|-..-..|.-||..|+..+...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888887766666553 45555556667778888888888765
No 17
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=82.79 E-value=2.5 Score=31.87 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 149 ISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
...|+++...|+|||+.|+-|++-+
T Consensus 74 ~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778999999999998654
No 18
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.72 E-value=20 Score=27.66 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
......+..+|..++.+...|...|..|..||+.+
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345678999999999999999999999999754
No 19
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.15 E-value=15 Score=26.02 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAK 158 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~ 158 (227)
+|++=|.+||..+..++.-|- ++.-+|+.|+.|-..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~ 36 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNS 36 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 467778888887777765442 333445555544333
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.59 E-value=14 Score=25.64 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
+|++=+.+||..+..++.-| .++.-+|+.|+.|-..|..|-+.++...+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 46666777777777665544 34444555555555444444444444433
No 21
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=79.60 E-value=13 Score=34.94 Aligned_cols=60 Identities=23% Similarity=0.504 Sum_probs=37.4
Q ss_pred ceeeecCCcccc-hhhh---hcc-------chhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 7 KIRKIDNITARQ-VTFS---KRR-------RGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 7 ~ik~Ien~~~Rq-vTfs---KRr-------~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
.|.-|.+.++|. |.|- ||. ++|+|+- .|.+--. +-+++|.++|++..| ++.+||..|-.+
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t-~L~~s~~--~Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVT-KLQTTFG--INMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhc-CCceeee--eeEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 466777777663 3332 222 3556443 2222222 267888899999888 689999999765
No 22
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=76.83 E-value=6.7 Score=26.31 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=23.8
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 027190 109 QMRGEDLHGLTIEELQHLETMLEQGLSRVLQ 139 (227)
Q Consensus 109 ~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~ 139 (227)
+..|+||+.||++||..-=..|+.-+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999998776666665555544
No 23
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.01 E-value=38 Score=33.01 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 93 YLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVL-----QTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 93 ~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr-----~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
..+|..++..|+..+..+. .++..|+..|+..-.+++ .++.+.+..+|+.|+++...-...-..|+
T Consensus 431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443 677777887777666654 44556667788888887766666666666
Q ss_pred HHHHhh
Q 027190 168 QKVASS 173 (227)
Q Consensus 168 ~~~~~~ 173 (227)
.++..+
T Consensus 502 ~~l~~l 507 (652)
T COG2433 502 RKLAEL 507 (652)
T ss_pred HHHHHH
Confidence 665543
No 24
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=74.83 E-value=36 Score=31.98 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.0
Q ss_pred chhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 26 RGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 26 ~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
++|+|+- .|.+- .-+-+++|.++|++..| .++.+||..|-.+
T Consensus 285 ~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~ 326 (439)
T PHA02592 285 EKIMKDF-GLIER--VSQNITVINENGKLKVY--ENAEDLIRDFVEI 326 (439)
T ss_pred HHHHHhc-Cchhe--eeeeEEEEecCCeeeec--CCHHHHHHHHHHH
Confidence 4666543 23222 23678899999998888 4578999998765
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.76 E-value=26 Score=23.97 Aligned_cols=44 Identities=27% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 122 EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+|+.||..++.-+.....- ..+-..|+.....+..|+..|..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L-----~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERL-----KSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred CHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888877655433 3344444555555555555554443
No 26
>smart00338 BRLZ basic region leucin zipper.
Probab=73.63 E-value=18 Score=24.20 Aligned_cols=36 Identities=36% Similarity=0.414 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+.|.+|. ..+..|..+...|..+|..|..++..+.
T Consensus 18 ~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 18 RRSRERKK----AEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 3567788888888888888888876654
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.75 E-value=23 Score=22.86 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+-|.+|- ..+..|......|..+|..|..++..+.
T Consensus 17 ~r~R~rkk----~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 17 RRSRQRKK----QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455553 4677888888899999999999987653
No 28
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=72.26 E-value=17 Score=26.78 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+.+...|..+..+...+..+-..++.++.++
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777654
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.93 E-value=18 Score=25.13 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
+.|.+...+.|..|+.+...|.++|..|...-..+..
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5677778888888888888888888888877655543
No 30
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=71.72 E-value=32 Score=25.94 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 136 RVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 136 ~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
.||+. .+.+.++|.+|..+...|++||..|+.-
T Consensus 64 AVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 64 AVREE-VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34443 4677888999999999999999888864
No 31
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.20 E-value=20 Score=26.67 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=28.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 127 ETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 127 E~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+...+.++..+..++. .+...|..|.++...+.+.-..+..++.++
T Consensus 62 ~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 62 KTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred eecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454455544443 346677777777777777777777776553
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.86 E-value=21 Score=31.86 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDR--IMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 113 edL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~--l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+++.++.++|..+...|...-..|.++|..+ +..++..+..+...+.++-..+..+|.+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999988777777666543 34566666666666666666666666553
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.75 E-value=15 Score=27.59 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
.....+.++|..|+.....|.+||..|+-.-+.+..
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999988766543
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.00 E-value=18 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
...+.+++..++.+...++.+|..|+.+|..+..+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34455677788888888888888888888776654
No 35
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.64 E-value=29 Score=23.07 Aligned_cols=35 Identities=34% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+.|.||.+ .|..|+.+...|..+|..|+..+..+
T Consensus 18 r~~R~RKk~----~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 18 RRSRQRKKQ----YIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666643 45666666667777777776666543
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.55 E-value=91 Score=27.89 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=45.7
Q ss_pred HHHHHhhhhhhcc--CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 99 EIADKSRQLRQMR--GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDR--IMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 99 ei~~l~~~lR~l~--GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~--l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
....|+.+++++. -.+++.++.++|..+...|..-...|...+.++ +.+++..+..+.....+.-..+..+|.+.
T Consensus 180 ~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 180 RKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443332 356788999999999988888777776665543 23455555555555555555555555543
No 37
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=66.60 E-value=12 Score=30.50 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 123 LQHLETMLEQGLSRVLQTKGDRIM---NEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 123 L~~LE~~Le~~L~~Vr~rK~q~l~---~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|..+|..|..++.+- -+|. +|-+.|+...+.|++|-..|++.+
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777766432 2333 444556666666666666666665
No 38
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.74 E-value=40 Score=27.53 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 121 EELQHLETMLEQGLSRV----------LQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 121 ~EL~~LE~~Le~~L~~V----------r~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.++..++..++..-... ...+.....++|+.|+++......+...|++|.+...
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444333 2234556778999999999999999999999987654
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.71 E-value=51 Score=27.65 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=9.2
Q ss_pred hhHHHHHHHhhhhhhc
Q 027190 95 SLSREIADKSRQLRQM 110 (227)
Q Consensus 95 kLkkei~~l~~~lR~l 110 (227)
.++.++..++.++..+
T Consensus 90 ~~~~rlp~le~el~~l 105 (206)
T PRK10884 90 SLRTRVPDLENQVKTL 105 (206)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3556666666655443
No 40
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=64.41 E-value=26 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
.|+-|....+|..|+.--..|+++|+.|+.
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666667777777654
No 41
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.24 E-value=25 Score=23.97 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027190 144 RIMNEISTLERKGAKLLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~~ 177 (227)
.+..+|..++++...+..+|..|..++..+...+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4557889999999999999999999998874433
No 42
>PRK01919 tatB sec-independent translocase; Provisional
Probab=64.13 E-value=5.2 Score=32.53 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=18.7
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
||||||+| .||++.+ -++...+.+++.+
T Consensus 15 VALiV~GP-ekLP~~a-RtlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVA-RTAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHH-HHHHHHHHHHHHH
Confidence 78999998 6776654 3455666666543
No 43
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.75 E-value=36 Score=21.41 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+=...+....+.|+..-..|..||..|+.+|..+.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888888889999999999987654
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.46 E-value=22 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.....+..++..|+.....|.+||..|+-.-..+
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999885443
No 45
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=60.30 E-value=64 Score=24.33 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
++.+..||.+|-..+..+-.-|.+ +.+|-..-..|+-||..||..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 466778888877766544443322 233333333444455555555533
No 46
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=59.48 E-value=64 Score=26.01 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 119 TIEELQHLETMLEQGLSRVLQ---TKGDRIMNEISTLERKGAKLLEEN 163 (227)
Q Consensus 119 sl~EL~~LE~~Le~~L~~Vr~---rK~q~l~~eI~~L~~ke~~l~eeN 163 (227)
+..+|..|-++++.+-..+|+ .|-.+|.+||..|+.+-+.+.++-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887777775 467788899999988877666654
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=58.00 E-value=41 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
+.|.+...+.|.-|+....+|.+.|..|...+.....
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888888888888888888887665443
No 48
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.59 E-value=99 Score=24.84 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=48.4
Q ss_pred HhhhhHHHHHHHhhhhhhc--cCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 027190 92 KYLSLSREIADKSRQLRQM--RGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRI---------MNEISTLERKGAKLL 160 (227)
Q Consensus 92 e~~kLkkei~~l~~~lR~l--~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l---------~~eI~~L~~ke~~l~ 160 (227)
.+..++.++..++..+++. +|++ |.+-|..+|...-..-..+|.+|-.++. +..+...+.|...+.
T Consensus 14 ~~~~lk~~l~k~~~ql~~ke~lge~---L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 14 KNITLKHQLAKLEEQLRQKEELGEG---LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777776666654 4555 4455555555555555555555544433 355667778888888
Q ss_pred HHHHHHHHHHHhh
Q 027190 161 EENKNLKQKVASS 173 (227)
Q Consensus 161 eeN~~L~~~~~~~ 173 (227)
.++..++..+...
T Consensus 91 ~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 91 EELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776543
No 49
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.82 E-value=46 Score=28.23 Aligned_cols=53 Identities=30% Similarity=0.409 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 120 IEELQHLETMLEQGLSRVL--QTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr--~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
..|+..|+..++..-...- ..+...+..|.+.+.+.-..|-++|+.|+.+++.
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 4566666666665444332 3344456678888888888899999999999854
No 50
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=56.22 E-value=9 Score=28.90 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=26.5
Q ss_pred hHhhhhccCCceEEEEecCCCCccccCCC---chhHHHhhh
Q 027190 32 AEELSVLCDAEVGVIIFSATGKLFESSSS---SMKDIIARY 69 (227)
Q Consensus 32 A~ELsvLCdaevalivfs~~gkl~~~~s~---sm~~ileRY 69 (227)
-.+|..|-+| +|+..||++|++.+|-.. .+-+++.+.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~l~~~~a~m~A~m 42 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKGELDEEMAEMLAKM 42 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeecCCCHHHHHHHHHH
Confidence 3577778888 477899999999998652 344555544
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.40 E-value=1.9e+02 Score=30.37 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=11.8
Q ss_pred EEEEecCCCCccccCCCc
Q 027190 44 GVIIFSATGKLFESSSSS 61 (227)
Q Consensus 44 alivfs~~gkl~~~~s~s 61 (227)
+.-+|.++|...-|..|.
T Consensus 621 ~~~aytldg~~~~~~g~~ 638 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN 638 (1074)
T ss_pred ceeeeccCccccccCCCC
Confidence 566788888655465554
No 52
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.13 E-value=59 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=5.6
Q ss_pred EEEEecCCCCc
Q 027190 44 GVIIFSATGKL 54 (227)
Q Consensus 44 alivfs~~gkl 54 (227)
+.|+.-..||.
T Consensus 46 g~i~~K~~GKq 56 (169)
T PF07106_consen 46 GKIVEKEYGKQ 56 (169)
T ss_pred CCeeeeeecce
Confidence 44555555554
No 53
>PF15058 Speriolin_N: Speriolin N terminus
Probab=53.85 E-value=32 Score=28.62 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027190 141 KGDRIMNEISTLERKGAKLLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 141 K~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~~ 177 (227)
+.+.++.+.++||+.++ |..||+.|+.-+-+.+.+.
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~~~ 48 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELKSALGEACAEP 48 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence 44556688899998876 7888999999887665543
No 54
>smart00340 HALZ homeobox associated leucin zipper.
Probab=53.43 E-value=31 Score=21.47 Aligned_cols=29 Identities=31% Similarity=0.294 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027190 149 ISTLERKGAKLLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~~~~~~ 177 (227)
-+.|++=-..|-+||.+|+++++++..-.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777789999999999999887543
No 55
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.20 E-value=50 Score=22.95 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
...+..++..++.+...++.+|..|+.++..+..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678999999999999999999999987654
No 56
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=53.03 E-value=74 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 129 MLEQGLSRVLQTKGDRI---MNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 129 ~Le~~L~~Vr~rK~q~l---~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
.+|.++.-| |.++| .++++-|+.+...|.+.|..|.+.=.
T Consensus 49 KIeQAMDLV---KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 49 KIEQAMDLV---KTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444434 45555 58999999999999999999998743
No 57
>smart00338 BRLZ basic region leucin zipper.
Probab=52.47 E-value=52 Score=21.86 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.+.+..+...|+.+...|..++..|+.++
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677788888888888888887765
No 58
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.28 E-value=49 Score=29.39 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 166 (227)
Q Consensus 114 dL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L 166 (227)
+-.+||.+|-..| .+||.||.+++ ++|+.|+....+..+|-..|
T Consensus 7 ep~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 7 EPNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 3467777777666 67888887754 78888888777776665443
No 59
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.53 E-value=63 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+++..+...++.|...+..||..|+.|++..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677888888999999999998543
No 60
>PF14645 Chibby: Chibby family
Probab=51.29 E-value=30 Score=26.34 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 148 EISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+...++++.+.|.|||+.|+-+++-
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677888888888888643
No 61
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.90 E-value=73 Score=23.76 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQG-------LSRVLQTKGDRIMNEISTLERKGA 157 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~-------L~~Vr~rK~q~l~~eI~~L~~ke~ 157 (227)
-|++++|+.++-...+.+ +..+-..+.+.+.++|..|+....
T Consensus 55 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~ 103 (116)
T cd04769 55 LGFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLA 103 (116)
T ss_pred cCCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888775544322 233334444444444444444433
No 62
>PRK11637 AmiB activator; Provisional
Probab=50.82 E-value=2.1e+02 Score=26.47 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 121 EELQHLETMLEQGLSRVLQTK--GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 121 ~EL~~LE~~Le~~L~~Vr~rK--~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.+|..++.+|...-..|.... ...+..+|..++.+...++++-..++..+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665544444332 22334555555555555555544444443
No 63
>PRK04654 sec-independent translocase; Provisional
Probab=50.74 E-value=1.7 Score=36.60 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=17.8
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNM 71 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~ 71 (227)
||||||+| .||.++. -.+.+.|.++++
T Consensus 15 VALlV~GP-erLPe~a-RtlGk~irk~R~ 41 (214)
T PRK04654 15 VALVVLGP-ERLPKAA-RFAGLWVRRARM 41 (214)
T ss_pred HHHHhcCc-hHHHHHH-HHHHHHHHHHHH
Confidence 68899998 6776664 345555655553
No 64
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.62 E-value=1e+02 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
+.+.-+|..|.+++..+++....|+..|...-.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556778999999999999999999999866543
No 65
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=47.58 E-value=18 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCCccccCCC-chhHHHhhhhcc
Q 027190 40 DAEVGVIIFSATGKLFESSSS-SMKDIIARYNMH 72 (227)
Q Consensus 40 daevalivfs~~gkl~~~~s~-sm~~ileRY~~~ 72 (227)
...++-||+ ++|++.+|..| .+.+|+..|=.|
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 445555555 78999999776 899999999765
No 66
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=47.18 E-value=79 Score=20.61 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=7.6
Q ss_pred CCCCHHHHHHHH
Q 027190 116 HGLTIEELQHLE 127 (227)
Q Consensus 116 ~~Lsl~EL~~LE 127 (227)
-|+|++|+.++=
T Consensus 13 lGfsL~eI~~~l 24 (65)
T PF09278_consen 13 LGFSLEEIRELL 24 (65)
T ss_dssp TT--HHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 468888888875
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.73 E-value=3.3e+02 Score=28.37 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CCCCCCCCHHHHHHHHHH---HHHHhHHHHH
Q 027190 112 GEDLHGLTIEELQHLETM---LEQGLSRVLQ 139 (227)
Q Consensus 112 GedL~~Lsl~EL~~LE~~---Le~~L~~Vr~ 139 (227)
|-+-.+.|--++.+||.+ |..+|-+.|+
T Consensus 359 G~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888888876 7777777774
No 68
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.68 E-value=87 Score=23.05 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 114 dL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
..+.++.+++.. ..| ......+++.|......+..+|..|..+|....
T Consensus 60 ~~~~l~P~~~i~--a~l-----------~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 60 WRHSLTPEEDIR--AHL-----------APYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCCCCChHHHHH--HHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778877742 222 222356788999999999999999999997654
No 69
>PF14282 FlxA: FlxA-like protein
Probab=45.64 E-value=1.2e+02 Score=22.41 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEEN 163 (227)
Q Consensus 91 ~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN 163 (227)
..+..|+++|..|+.++..+... .+++.++ ...|.+.|..+|..|+.....++.+-
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899888888776542 2233443 34556667777777777766554443
No 70
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=45.60 E-value=74 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
+...|+.|=..-..|..||..|+.+++....
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777777655443
No 71
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.28 E-value=2.7e+02 Score=26.50 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 126 LETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 126 LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+..++..++...| +-+.++.+.|+.....++..-..|..++....
T Consensus 99 id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 99 IDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555554433 44566788888887788888888888885543
No 72
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.73 E-value=1.7e+02 Score=23.60 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 115 LHGLTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 115 L~~Lsl~EL~~LE~~Le~~L~~Vr~--rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
...|++++...+-+.|......... .-.+.+..++..|+.+...|..+|..|.+++..+.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999888887754222221 22345667888888888888888888888765543
No 73
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.43 E-value=1.1e+02 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~~ 177 (227)
.+.++.|..+|..-+.-...+.++...|+..|..+....
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677777787777778888888888888887766543
No 74
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.31 E-value=82 Score=22.57 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
...+..+++.++++...|.+||..|+-+++.+..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455677999999999999999999999876654
No 75
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=42.69 E-value=27 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQ 139 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~ 139 (227)
+|+++.+..-|-+.=|..|++||.
T Consensus 232 EG~slPs~lPLTKaEEriLKrvRR 255 (472)
T KOG0709|consen 232 EGYSLPSKLPLTKAEERILKRVRR 255 (472)
T ss_pred ccCcCcccCCchHHHHHHHHHHHH
Confidence 455666666666666667777763
No 76
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.65 E-value=1.4e+02 Score=22.07 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|+|++|+..+-.....+-..+ ..-..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTI-PERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999887644332211111 12234555666666666665555555555544
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.63 E-value=3.4e+02 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
..+...+..+...|.++...|.++.
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554
No 78
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=41.52 E-value=1.4e+02 Score=30.14 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 124 QHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 162 (227)
Q Consensus 124 ~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~ee 162 (227)
.|.+.-|+..|.++..-....+.+|+.+|+++...|+.-
T Consensus 421 ~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 421 IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999998888888888888888877665544
No 79
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=41.42 E-value=37 Score=30.04 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=30.6
Q ss_pred ceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCC-CchhHHHhhhhc
Q 027190 7 KIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-SSMKDIIARYNM 71 (227)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s-~sm~~ileRY~~ 71 (227)
.+..|.|.+.|..+=|+ .||..|.+ +.| .|-+ |.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 35678887777666332 58888875 444 3555 789999999975
No 80
>PLN03128 DNA topoisomerase 2; Provisional
Probab=41.38 E-value=2.2e+02 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 44 GVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 44 alivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
-+++|.+.|++..|. ++.+||..|-.+
T Consensus 961 nm~l~d~~~~i~ky~--~~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYD--SPEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCC--CHHHHHHHHHHH
Confidence 577899999988884 568888888755
No 81
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.70 E-value=2.4e+02 Score=24.29 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=6.3
Q ss_pred CCCCCCCCHH
Q 027190 112 GEDLHGLTIE 121 (227)
Q Consensus 112 GedL~~Lsl~ 121 (227)
|.|++.++++
T Consensus 97 GHDvEhiD~e 106 (290)
T COG4026 97 GHDVEHIDVE 106 (290)
T ss_pred CCCccccCHH
Confidence 5677766654
No 82
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=40.22 E-value=78 Score=20.02 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 138 LQTKGDRIMNEISTLERKGAKLLEE 162 (227)
Q Consensus 138 r~rK~q~l~~eI~~L~~ke~~l~ee 162 (227)
.+.|.+-+-++|..|++|...|...
T Consensus 17 IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677778898888887666554
No 83
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=40.02 E-value=33 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.5
Q ss_pred ceEEEEecCCC--CccccCCC-chhHHHhhhhc
Q 027190 42 EVGVIIFSATG--KLFESSSS-SMKDIIARYNM 71 (227)
Q Consensus 42 evalivfs~~g--kl~~~~s~-sm~~ileRY~~ 71 (227)
.+-|+|++.+| |||.+..+ ....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46789999988 68888764 79999999974
No 84
>PRK11637 AmiB activator; Provisional
Probab=40.01 E-value=3e+02 Score=25.34 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027190 144 RIMNEISTLERKGAKLLE 161 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~e 161 (227)
.+..+|..++.+...+.+
T Consensus 107 ~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 107 ELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444333
No 85
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=39.11 E-value=22 Score=27.91 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.0
Q ss_pred hhhhccCCceEEEEecCCCCccccC
Q 027190 34 ELSVLCDAEVGVIIFSATGKLFESS 58 (227)
Q Consensus 34 ELsvLCdaevalivfs~~gkl~~~~ 58 (227)
=+.++|||||-++|-+.+.+..-||
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHHhhccceeeeeecccCccccCC
Confidence 3678999999999999988866665
No 86
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.60 E-value=2.1e+02 Score=27.75 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=17.8
Q ss_pred cchhhhhhHhhhh--ccCCceEEEEecCCCCcccc
Q 027190 25 RRGLFKKAEELSV--LCDAEVGVIIFSATGKLFES 57 (227)
Q Consensus 25 r~GL~KKA~ELsv--LCdaevalivfs~~gkl~~~ 57 (227)
-..|+.++=++.- +-++.|.+... ..|+.|+.
T Consensus 88 l~pLL~~~vvI~~l~l~g~~v~l~R~-~~G~~~~~ 121 (555)
T TIGR03545 88 WDALLRGKVVIEELAIEGLAFGTERS-TSGAVPET 121 (555)
T ss_pred cHHHhcCCcEEeEEEEecCEEEEEEc-cCCCCCCC
Confidence 3456666655543 34666665544 44777753
No 87
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.16 E-value=1.3e+02 Score=22.19 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
-|+..++-+-|+++...+.++|..|..++..+..
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678899999999999999999999977654
No 88
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.99 E-value=99 Score=28.03 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=28.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 112 GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
..+|+|.|++|+-.|... +..+..|++.|+.+...| ||..++
T Consensus 23 ~~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 23 NHELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred cccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 457889999998877332 234556788888888877 444554
No 89
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=37.89 E-value=2.7e+02 Score=25.41 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=41.3
Q ss_pred chhHHHhhhhccccccccCCCCchhHHhHHHHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 027190 61 SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQT 140 (227)
Q Consensus 61 sm~~ileRY~~~s~~~~~~~~~~~~~q~~~~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~r 140 (227)
.+..+.+||.....-....+-.+ ...++.++.++...|+.-... +.++.+++..|+.+-.-+.+.
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~-----d~~~~~~lske~a~l~~iv~~----------~~~~~~~~~~l~~a~~~l~~~ 72 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVIS-----DPDEYRKLSKEYAELEPIVEK----------YREYKKAQEDLEDAKEMLAEE 72 (363)
T ss_pred HHHHHHHHHHHHHHHhcCccccc-----CHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcc
Confidence 57889999987654332221101 112233344444443322211 234444444444432222221
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 141 KG----DRIMNEISTLERKGAKLLEENKNL 166 (227)
Q Consensus 141 K~----q~l~~eI~~L~~ke~~l~eeN~~L 166 (227)
++ .+..++|..++.+...|.++-+.|
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 344566777776666666655444
No 90
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.71 E-value=3.1e+02 Score=24.73 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 134 LSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 134 L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
|...|++. ..+..++..|+.+..+++.++..||.+++....+
T Consensus 74 L~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 74 LSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 44445543 4567899999999999999999999999776543
No 91
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=37.59 E-value=3.2e+02 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027190 125 HLETMLEQGLSRVLQTKGDRIMNEISTLERKG 156 (227)
Q Consensus 125 ~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke 156 (227)
+.+.-|+..|.++..-+...+.+|++.++...
T Consensus 400 q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei 431 (445)
T smart00434 400 QADAILDMRLRRLTKLEVEKLEKELKELEKEI 431 (445)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 56666777777666655555555554444443
No 92
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=37.27 E-value=80 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 144 RIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+..||..|++....+.+||..|+-.-+.+.
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 4568999999999999999999998755443
No 93
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=37.25 E-value=22 Score=32.57 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=28.6
Q ss_pred HhhhhccCCce--EEEEecCCCCccccCC---CchhHHHhhhhcc
Q 027190 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSMKDIIARYNMH 72 (227)
Q Consensus 33 ~ELsvLCdaev--alivfs~~gkl~~~~s---~sm~~ileRY~~~ 72 (227)
+=|||+||-+| |||--.++|=-|.-|. +++++++.-|...
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~ 411 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHT 411 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhh
Confidence 56999999999 7666667774444333 3788999888754
No 94
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.19 E-value=19 Score=30.59 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.9
Q ss_pred CceEEEEecCCCCccc--cC
Q 027190 41 AEVGVIIFSATGKLFE--SS 58 (227)
Q Consensus 41 aevalivfs~~gkl~~--~~ 58 (227)
-|-||-||||+|.||. |+
T Consensus 4 ydraltvFSPDGhL~QVEYA 23 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYA 23 (249)
T ss_pred cccceEEECCCCCEEeeHhH
Confidence 3568999999999986 65
No 95
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=36.51 E-value=1.4e+02 Score=20.57 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 125 HLETMLEQGLSRV---LQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 125 ~LE~~Le~~L~~V---r~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.||.+|-.+|..+ -.+.-+.+......|+..-..-..+|..|+.+|..+
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~L 54 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNL 54 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3556665555444 345555666677777776666666666666666554
No 96
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.14 E-value=1e+02 Score=23.10 Aligned_cols=28 Identities=36% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
..++|..|++....|..||..|++.++-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999988744
No 97
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=35.54 E-value=21 Score=26.40 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred hhhHhhhhccCCceEEEEecCCCCccccCCC
Q 027190 30 KKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (227)
Q Consensus 30 KKA~ELsvLCdaevalivfs~~gkl~~~~s~ 60 (227)
.|-.||--+-+| +|.=.|||+|||.+|-++
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 356677766676 466789999999999763
No 98
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=35.41 E-value=1.6e+02 Score=22.28 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+..+=...+. ..+ ..-..++.+++..++.+...|..-...|...+.
T Consensus 55 ~G~sl~eI~~~l~~~~~--~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 55 LGFSLEEIGGLLGLVDG--THC-REMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCCCHHHHHHHHhcccC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888876543221 111 111245556666666666666666556655543
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.39 E-value=58 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 149 ISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
++.|++|.+.|.+||..|+.+...+..+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6899999999999999999997665533
No 100
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.21 E-value=2.2e+02 Score=28.74 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 119 TIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLL 160 (227)
Q Consensus 119 sl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~ 160 (227)
.+.| .|-|.-|+.-|.++..--...+.+|.++|++....|+
T Consensus 404 ~ls~-~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~ 444 (735)
T TIGR01062 404 KLSA-IQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILE 444 (735)
T ss_pred CCCH-HHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4567888888888887767777777777776655443
No 101
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=34.79 E-value=1.6e+02 Score=21.34 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHH
Q 027190 117 GLTIEELQHLETMLE 131 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le 131 (227)
|++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 788999988765543
No 102
>PRK14127 cell division protein GpsB; Provisional
Probab=34.49 E-value=1.1e+02 Score=23.14 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 113 edL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
..+.|++.+|...+-.++-. .++.|.+....|.++|..|+.++.+...
T Consensus 18 ~~~RGYd~~EVD~FLd~V~~---------------dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 18 TSMRGYDQDEVDKFLDDVIK---------------DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999998877443332 3444444555566666666666655443
No 103
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=34.29 E-value=2.5e+02 Score=26.78 Aligned_cols=13 Identities=46% Similarity=0.460 Sum_probs=8.5
Q ss_pred HhhhhccCCceEE
Q 027190 33 EELSVLCDAEVGV 45 (227)
Q Consensus 33 ~ELsvLCdaeval 45 (227)
.|+||-|.-+|.+
T Consensus 254 pe~sv~~qkev~~ 266 (527)
T PF15066_consen 254 PEMSVSHQKEVTV 266 (527)
T ss_pred cccccchhhhcch
Confidence 4677777666654
No 104
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.07 E-value=1.6e+02 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 144 RIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
-+.++...++.....|..+|..|+.+
T Consensus 36 ~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 36 SLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555443
No 105
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=34.00 E-value=2.1e+02 Score=21.78 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
-|+|++|+.++-...+.+-... ..-.+++.+++..+..+...|..--..|...+...
T Consensus 56 ~G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 56 LGFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred cCCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999888754433221111 12234566677777777776666666666665443
No 106
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=23 Score=30.21 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.0
Q ss_pred hhccCCceEEEEecCCCCccc--cCC
Q 027190 36 SVLCDAEVGVIIFSATGKLFE--SSS 59 (227)
Q Consensus 36 svLCdaevalivfs~~gkl~~--~~s 59 (227)
||=.+-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 445677889999999999987 543
No 107
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=33.00 E-value=1.7e+02 Score=22.89 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++++..+-..+...-......-..++.+++..+..+...|..--..|...+.
T Consensus 56 ~G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 56 VGIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred cCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999887665432211111222235556666666666666666666665553
No 108
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.92 E-value=1.8e+02 Score=20.64 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 122 EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+...|...|+.-+.+|-.- +..-..|..||+.|..=|..+.
T Consensus 24 ei~~LQ~sL~~L~~Rve~V------------k~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEV------------KEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444 4445578999999999887764
No 109
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=32.76 E-value=1.4e+02 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|++++|+..+-..-.... ..++.+++..+..+...|...-..|...+
T Consensus 57 ~G~sL~eI~~ll~~~~~~~-------~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 57 AGVSLEDIRSLLQQPGDDA-------TDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred cCCCHHHHHHHHhcCChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888877644322222 23444555555555555555554555444
No 110
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.15 E-value=2.1e+02 Score=21.24 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|++++|+..+-.....+-. ....-.+++.+++..+..+...|...-..|...+
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 56 LGFSLAEIRELLSLRDDGAA-PCAEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCCHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888998887554433210 1122234555666666666666655555555544
No 111
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=32.08 E-value=40 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=16.2
Q ss_pred hhhccCCceEEEEecCCCCcccc
Q 027190 35 LSVLCDAEVGVIIFSATGKLFES 57 (227)
Q Consensus 35 LsvLCdaevalivfs~~gkl~~~ 57 (227)
|+--|++-|-+-||...|.+-.|
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvf 25 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVF 25 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEE
T ss_pred cCCccCceEEEEeecCCCcEEEE
Confidence 56679999999999999955444
No 112
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=31.83 E-value=1.6e+02 Score=27.78 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=4.9
Q ss_pred HHHHHHHHhHHH
Q 027190 126 LETMLEQGLSRV 137 (227)
Q Consensus 126 LE~~Le~~L~~V 137 (227)
+.+.++.||..|
T Consensus 14 vdeEik~Al~Gv 25 (436)
T PF01093_consen 14 VDEEIKNALNGV 25 (436)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 113
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=31.60 E-value=15 Score=27.84 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=27.6
Q ss_pred cchhhhhccc---------hhhhhhHhhhhccCCceEEEEecCCCC
Q 027190 17 RQVTFSKRRR---------GLFKKAEELSVLCDAEVGVIIFSATGK 53 (227)
Q Consensus 17 RqvTfsKRr~---------GL~KKA~ELsvLCdaevalivfs~~gk 53 (227)
+-.-||+-|+ |=+-|..|+.+=||.|+-+++..+.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3344566565 445567899999999999999999664
No 114
>smart00030 CLb CLUSTERIN Beta chain.
Probab=31.54 E-value=2.1e+02 Score=23.98 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=4.7
Q ss_pred HHHHHHHHhHHH
Q 027190 126 LETMLEQGLSRV 137 (227)
Q Consensus 126 LE~~Le~~L~~V 137 (227)
+.++++.||.-|
T Consensus 20 vd~EI~nAl~Gv 31 (206)
T smart00030 20 INKEIKNALKGV 31 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 115
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.53 E-value=2.2e+02 Score=21.28 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 116 HGLTIEELQHLETMLEQGLSRV--LQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~V--r~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
-|++++++..+-.....+-... .....+++.+++..|..+...|.+.-..|...+..
T Consensus 54 ~G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 54 LGFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887755443321111 12233566677777777777776666666666543
No 116
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=31.41 E-value=2e+02 Score=21.63 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+.++=..-... ....-.+++..++..+.++...|..--..|...+.
T Consensus 56 ~G~sL~eI~~~l~~~~~~---~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 108 (126)
T cd04783 56 LGFTLDEIAELLELDDGT---DCSEARELAEQKLAEVDEKIADLQRMRASLQELVS 108 (126)
T ss_pred cCCCHHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888764332211 01112344555666666666666555555555553
No 117
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=31.35 E-value=13 Score=27.76 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=38.1
Q ss_pred ccceeee-cCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 5 KIKIRKI-DNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 5 Ki~ik~I-en~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
+|++|.+ +|.++=.|+|.||-.| +.-+=....|..=-|+..-.++++..|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~G---------------irqfEi~n~G~~RI~gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKG---------------IRQFEIRNKGEFRIFGYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETT---------------EEEEEEETTSEEEEEEES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCc---------------eeEEEEecCCcEEEEEEcCCHHHHHHHHhc
Confidence 5778877 7889999999999999 555666788876666665567788888754
No 118
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.14 E-value=2.1e+02 Score=20.75 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+..+|..|+.+...+.+||..|+.++....
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888988888875543
No 119
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=31.07 E-value=2.2e+02 Score=21.58 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|++++|+.++=.....+-.. ...-.+++..++..+..+...|...-..|...+
T Consensus 56 lG~sL~eI~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 56 LDMSLAEIRQLLRYQDKPEKS-CSDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred cCCCHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889988864432221111 112234566677777777777766666666554
No 120
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=30.66 E-value=2.5e+02 Score=21.62 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+.++-...+..=... ..-.+++.+++..+..+...|+..-..|...+.
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 56 VGFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999888755433211111 122244566677777777777766666666554
No 121
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=30.61 E-value=70 Score=20.11 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+....++-.|..|..+...|..||..|+.++
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445566788888888999999999999876
No 122
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.28 E-value=2.3e+02 Score=20.94 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGL--SRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L--~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
-|++++|+..+-.....+- ...-....+++.+++..+..+...|...-..|.
T Consensus 55 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 55 AGLTLEEIREFLPCLRGGEPTFRPCPDLLAVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred cCCCHHHHHHHHHHhhCCCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888755443321 000112224445555555555554444444443
No 123
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.12 E-value=2.3e+02 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 150 STLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
.+++.+...|..||..|+.+|+.+...
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888766543
No 124
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.00 E-value=3.5e+02 Score=23.49 Aligned_cols=12 Identities=42% Similarity=0.268 Sum_probs=6.1
Q ss_pred cCCCCccccCCC
Q 027190 49 SATGKLFESSSS 60 (227)
Q Consensus 49 s~~gkl~~~~s~ 60 (227)
+|+|.-.-|.+|
T Consensus 30 ~p~g~s~~~~~~ 41 (292)
T KOG4005|consen 30 SPTGSSSGYASS 41 (292)
T ss_pred CCCCCCccccCc
Confidence 455554445554
No 125
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=29.94 E-value=2.6e+02 Score=21.59 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+..+-......-...-..-..++.+++..+.++...|..-...|...+.
T Consensus 57 ~G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 57 LGFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred cCCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888887543211000011222345566666677666666665555555543
No 126
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.49 E-value=2.2e+02 Score=21.52 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+.+..+|..|.++...+.+.-..+..++.++-
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888888888888888886654
No 127
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.30 E-value=2.4e+02 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
..+-++|.+.+...++.+++....+.|+|+.|.+
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666666655544
No 128
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=29.23 E-value=17 Score=24.57 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=22.8
Q ss_pred hhccchhhhhhHhhhhccC-CceEEEEecCCCCc
Q 027190 22 SKRRRGLFKKAEELSVLCD-AEVGVIIFSATGKL 54 (227)
Q Consensus 22 sKRr~GL~KKA~ELsvLCd-aevalivfs~~gkl 54 (227)
..||.|.+-+ |.|+-+| .+=.+-||+..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 3688886665 8899886 45689999999975
No 129
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=29.16 E-value=29 Score=32.12 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=44.4
Q ss_pred eeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCC-chhHHHhhhhc
Q 027190 8 IRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS-SMKDIIARYNM 71 (227)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~-sm~~ileRY~~ 71 (227)
|+++-++..-..||..|+.| ||+.+||+.+-+.||-..--...|+++ -..+.-.-|+.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~ 76 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQK 76 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhh
Confidence 78888888899999999999 999999999988888776655666664 24444443433
No 130
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.94 E-value=2.6e+02 Score=21.26 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+..+-......-......-..++.+++..++.+...|..--..|...+.
T Consensus 57 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (131)
T TIGR02043 57 LGFTLDEIKELLSIKLDATEHSCAEVKAIVDAKLELVDEKINELTKIRRSLKKLSD 112 (131)
T ss_pred cCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889998887553211000001122345666777777777666665555555543
No 131
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.94 E-value=2.7e+02 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027190 149 ISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+...+.....++.--..|..+|
T Consensus 98 v~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 98 VSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444
No 132
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=28.92 E-value=39 Score=19.60 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.8
Q ss_pred ceEEEEecCCCCccccCC
Q 027190 42 EVGVIIFSATGKLFESSS 59 (227)
Q Consensus 42 evalivfs~~gkl~~~~s 59 (227)
.-.-..|||+||-+.|++
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 446788999999988876
No 133
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.34 E-value=1.8e+02 Score=19.13 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027190 148 EISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
+...|+.....|..++..|..+
T Consensus 41 en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 41 ENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444443
No 134
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=28.26 E-value=57 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.479 Sum_probs=20.8
Q ss_pred cCCceEEEEecCCCCccccCCC-chhHHHhhh
Q 027190 39 CDAEVGVIIFSATGKLFESSSS-SMKDIIARY 69 (227)
Q Consensus 39 Cdaevalivfs~~gkl~~~~s~-sm~~ileRY 69 (227)
|+..-.++|. |.|.+|...++ .+.+||+++
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6555555555 77888888775 688888754
No 135
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=27.93 E-value=2.7e+02 Score=23.34 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=20.0
Q ss_pred cCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 39 CDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 39 Cdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
-||.+||+|||.+.+- |.+.+++=|...
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~kv 118 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNKV 118 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHHH
Confidence 4899999999998762 345566666543
No 136
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=27.83 E-value=2.5e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|+|++|+..+-.....+-...-..-..++.+++..+..+...|..--..|...+
T Consensus 66 lG~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 66 IGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899888755432221111112233444555555655555555555555544
No 137
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.77 E-value=2.7e+02 Score=20.94 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|++++|+..+-.....+-. ....-..++.+++..+.++...|..-...|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T cd04784 57 DMSLDEIRTLLQLQDDPEA-SCAEVNALIDEHLAHVRARIAELQALEKQLQALR 109 (127)
T ss_pred CCCHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999887543222100 0112234555666666666655555555555444
No 138
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.39 E-value=2.5e+02 Score=20.52 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
-|+++.|+..+-..... ..-..++..++..+.++...+...-..|...
T Consensus 57 ~G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 57 LGFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred cCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888877544332 2333444555555555555554444444443
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.28 E-value=3.1e+02 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027190 149 ISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
|+.+.-+...+.+....+-..+.
T Consensus 77 ~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 77 IQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 140
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.04 E-value=2e+02 Score=20.90 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHH
Q 027190 117 GLTIEELQHLET 128 (227)
Q Consensus 117 ~Lsl~EL~~LE~ 128 (227)
|+|++|+..+=.
T Consensus 55 G~sL~eI~~~l~ 66 (107)
T cd04777 55 GFSLIEIQKIFS 66 (107)
T ss_pred CCCHHHHHHHHH
Confidence 788999988643
No 141
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.33 E-value=1.4e+02 Score=21.41 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHH
Q 027190 116 HGLTIEELQHLET 128 (227)
Q Consensus 116 ~~Lsl~EL~~LE~ 128 (227)
-|++++|+..+-.
T Consensus 56 ~G~~l~eI~~~l~ 68 (96)
T cd04788 56 LGFSLREIGRALD 68 (96)
T ss_pred cCCCHHHHHHHHh
Confidence 3688888887744
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.31 E-value=1.6e+02 Score=30.75 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 027190 130 LEQGLSRVLQTKGD-RIMNEISTLERKGAKLLEENKNLKQKVASSCKGKR 178 (227)
Q Consensus 130 Le~~L~~Vr~rK~q-~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~~~ 178 (227)
|+.-|.+.|+|=+. -+..+|-.|++|...+..++...+.|++++..++.
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55556666666543 34567788888888888888888888888776654
No 143
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=26.01 E-value=10 Score=25.79 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=25.5
Q ss_pred hhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcccc
Q 027190 34 ELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74 (227)
Q Consensus 34 ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~s~ 74 (227)
||-|++= ||||||.|. ||++.+ .++.+.+..|++...
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~-r~lGk~ir~fkk~~~ 44 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLG-QALGGAIRNFKKASN 44 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHH-HHHHHHHHHHHHHcc
Confidence 4444443 789999985 888775 457777777776544
No 144
>PF13514 AAA_27: AAA domain
Probab=26.01 E-value=2e+02 Score=30.26 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred EecCCCCccccCCCchhHHHhhhhccccccccCCCCchhHHhHHHHhhhhHHHHHHHhhhhhhccCC--CCCCC-----C
Q 027190 47 IFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGE--DLHGL-----T 119 (227)
Q Consensus 47 vfs~~gkl~~~~s~sm~~ileRY~~~s~~~~~~~~~~~~~q~~~~e~~kLkkei~~l~~~lR~l~Ge--dL~~L-----s 119 (227)
+|.|+|+ +|.+...+.+|.................+.....+..+..++..++.++..+..+ .+.-+ .
T Consensus 142 Lfkprg~-----~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~ 216 (1111)
T PF13514_consen 142 LFKPRGR-----KPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPL 216 (1111)
T ss_pred hhCCCCC-----ChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027190 120 IEELQHLETMLEQG-----LSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 120 l~EL~~LE~~Le~~-----L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~~ 177 (227)
+.++..|+.+|... +-.--...-+.+..++..++.....+.++...+..++..+...+
T Consensus 217 ~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 279 (1111)
T PF13514_consen 217 LAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDE 279 (1111)
T ss_pred HHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.81 E-value=3.7e+02 Score=21.92 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027190 148 EISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+...+..+...|++||..|-...
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888889998876653
No 146
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.77 E-value=1.7e+02 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHH
Q 027190 116 HGLTIEELQHLET 128 (227)
Q Consensus 116 ~~Lsl~EL~~LE~ 128 (227)
-|++++++..+-.
T Consensus 56 ~G~~l~~I~~~l~ 68 (96)
T cd04768 56 LGFSLAEIKELLD 68 (96)
T ss_pred cCCCHHHHHHHHh
Confidence 4688888877644
No 147
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=25.60 E-value=5.7 Score=25.89 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhccc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNMHS 73 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~~s 73 (227)
||+|||+| +||++++ -++.+.+..|++..
T Consensus 12 valllfGp-~kLP~~~-r~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELA-RSLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHH-HHHHHHHHHHHHHH
Confidence 57889999 7888776 45667777776543
No 148
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.13 E-value=4e+02 Score=25.87 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=36.0
Q ss_pred HhhhhccCCceEEEEecCCCCccccCC----CchhHHHhhhhccccccccCCCCchhHHhHHHHhhhhHHHHHHHhhhhh
Q 027190 33 EELSVLCDAEVGVIIFSATGKLFESSS----SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLR 108 (227)
Q Consensus 33 ~ELsvLCdaevalivfs~~gkl~~~~s----~sm~~ileRY~~~s~~~~~~~~~~~~~q~~~~e~~kLkkei~~l~~~lR 108 (227)
.=..+.|+-.+|-+.|+..-..|.+.- .-|.++|.-++......-....... ....+.+|+.+++.++...+
T Consensus 402 ~i~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~rer~----l~a~t~kL~~E~e~~q~~~~ 477 (588)
T KOG3612|consen 402 AIKLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGSRERS----LVAATEKLRQEFEELQQTSR 477 (588)
T ss_pred hhhhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcCCccc----hHHHHHHHHHHHHHHHHHHh
Confidence 345677888888777776544444432 2355555444432211100000000 23456678888877765444
No 149
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.13 E-value=3.2e+02 Score=21.06 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=5.9
Q ss_pred cCCCchhHHHhhhhcc
Q 027190 57 SSSSSMKDIIARYNMH 72 (227)
Q Consensus 57 ~~s~sm~~ileRY~~~ 72 (227)
|+.+....|..++...
T Consensus 17 faA~~~~~v~~~l~~L 32 (126)
T PF09403_consen 17 FAATATASVESELNQL 32 (126)
T ss_dssp ------HHHHHHHHHH
T ss_pred HHcccchHHHHHHHHH
Confidence 5445456666666543
No 150
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.03 E-value=1.6e+02 Score=18.99 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027190 115 LHGLTIEELQHLETMLEQ 132 (227)
Q Consensus 115 L~~Lsl~EL~~LE~~Le~ 132 (227)
|..+|++||++.-..|+.
T Consensus 5 Lk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGS-HHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCH
Confidence 567888888876555543
No 151
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=24.71 E-value=2e+02 Score=19.65 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
|++|+.|+++.+.|..--...+-.++++..+
T Consensus 1 m~d~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 1 MSDIEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678899999999999889999999888766
No 152
>PF15058 Speriolin_N: Speriolin N terminus
Probab=24.65 E-value=1.1e+02 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 149 ISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+-|+.+...|+.||..||++|.-+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455666677888888888875443
No 153
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=24.63 E-value=3.1e+02 Score=20.64 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
-|++++|+.++-......- .....-..++..++..+..+...|...-..|...+.
T Consensus 56 ~G~sL~eI~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 56 VGFSLEECKELLNLWNDPN-RTSADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CCCCHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899888754322211 111222345566677777777777666666666653
No 154
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.46 E-value=3.7e+02 Score=21.56 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 027190 121 EELQHLETMLEQGLSRVLQ 139 (227)
Q Consensus 121 ~EL~~LE~~Le~~L~~Vr~ 139 (227)
.|+..++..+...+..+|.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~ 65 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRS 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 155
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.42 E-value=4.1e+02 Score=21.98 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027190 151 TLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 151 ~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
.++.....|+++...|..+|.+
T Consensus 168 ~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 168 EAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555544
No 156
>PLN02372 violaxanthin de-epoxidase
Probab=24.40 E-value=6e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRI 145 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l 145 (227)
++|..++|.+++.-...|+..-..++
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~ 403 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLF 403 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777776666544443
No 157
>PRK09039 hypothetical protein; Validated
Probab=24.24 E-value=5.3e+02 Score=23.23 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 123 LQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLL 160 (227)
Q Consensus 123 L~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~ 160 (227)
|..|+..|+.+=.+. .-...+|+.|+.+...+.
T Consensus 153 la~le~~L~~ae~~~-----~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 153 LAALEAALDASEKRD-----RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 666666666654333 333456667766655443
No 158
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=23.93 E-value=5.6e+02 Score=25.27 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=43.9
Q ss_pred hhhhHHHHHHHhhhhhhccCCCCCCCC-HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 93 YLSLSREIADKSRQLRQMRGEDLHGLT-IEELQHLETMLEQGLS----RVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 93 ~~kLkkei~~l~~~lR~l~GedL~~Ls-l~EL~~LE~~Le~~L~----~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
..+|+.+++++..++-...+.++.-.. .+.+.+++..++.... -+.....+-+.+.-..|+.....+.+.|..+.
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le 202 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELE 202 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655555444443322222 1344555555555444 44444555555666666666667777777777
Q ss_pred HHHHhh
Q 027190 168 QKVASS 173 (227)
Q Consensus 168 ~~~~~~ 173 (227)
.+|..+
T Consensus 203 ~ki~~l 208 (629)
T KOG0963|consen 203 KKISSL 208 (629)
T ss_pred HHHHHH
Confidence 776554
No 159
>PHA01750 hypothetical protein
Probab=23.80 E-value=2.5e+02 Score=19.28 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 027190 145 IMNEISTLERK 155 (227)
Q Consensus 145 l~~eI~~L~~k 155 (227)
+.+++.++++|
T Consensus 61 l~~qv~eik~k 71 (75)
T PHA01750 61 LSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 160
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=23.76 E-value=4.5e+02 Score=26.18 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 122 ELQHLETMLEQGLSRVLQTKGDRI---MNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 122 EL~~LE~~Le~~L~~Vr~rK~q~l---~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
+|..|+++-+.-+...+.++.++- .+|++.|+.-.+.|+.|.+.|.-++.....
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555554454444332 478999999999999999999887755443
No 161
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.73 E-value=3.5e+02 Score=20.91 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQ--GLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~--~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
-|++++|+..+=..... .-......+.+.+..+|..++.+...+.+-...|..
T Consensus 55 ~G~sL~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 55 QRLSLAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred CCCCHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766443332 111122344455667777777776666666655543
No 162
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=23.73 E-value=1.6e+02 Score=17.15 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027190 122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLER 154 (227)
Q Consensus 122 EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ 154 (227)
.+..|+..++.+...-.=.+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 355666666666666665666666666666654
No 163
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=23.61 E-value=3.3e+02 Score=20.54 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|++++|+.++-.....+-... ..-..++.+++..+..+...|..--..|...+
T Consensus 56 ~G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 56 LGFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred cCCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999988654333211111 11234566666666666666665555555554
No 164
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.61 E-value=3.2e+02 Score=20.52 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
-|++++|+.++-.....+-.. ...-.+++..++..+..+...|......|...+..
T Consensus 56 ~G~sL~eI~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (126)
T cd04785 56 LGFSLEEIRALLALSDRPDRS-CAEADAIARAHLADVRARIADLRRLEAELKRMVAA 111 (126)
T ss_pred CCCCHHHHHHHHhhhhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899998874433321111 12223456677777777777777777777766643
No 165
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=23.61 E-value=8.6 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=19.1
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
||++||.| +|+++.+ .++-+.+..|++.
T Consensus 13 i~llvfGp-~kLP~~~-r~lG~~i~~fk~~ 40 (47)
T TIGR01411 13 VILLLFGA-KKLPELG-RDLGKAIKEFKKA 40 (47)
T ss_pred HHHHhcCc-hHhHHHH-HHHHHHHHHHHHH
Confidence 68889977 7887765 3456666666654
No 166
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=23.58 E-value=3e+02 Score=21.47 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
-|++++|+..+-..-+... ...-.+++.+++..++.+...|..-...|...+..
T Consensus 63 ~G~sL~eI~~ll~~~~~~~---~~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~~~ 116 (144)
T PRK13752 63 LGFSLDEIAELLRLEDGTH---CEEASSLAEHKLKDVREKMADLARMEAVLSELVCA 116 (144)
T ss_pred cCCCHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888887643211110 11123455666777777777676666667665543
No 167
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=23.54 E-value=2.4e+02 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHH
Q 027190 116 HGLTIEELQHLE 127 (227)
Q Consensus 116 ~~Lsl~EL~~LE 127 (227)
.|++++|+..+-
T Consensus 56 ~G~~l~ei~~~~ 67 (102)
T cd04775 56 GGLPLEEIAGCL 67 (102)
T ss_pred CCCCHHHHHHHH
Confidence 368888888753
No 168
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.43 E-value=2.3e+02 Score=23.45 Aligned_cols=33 Identities=39% Similarity=0.412 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 137 VLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 137 Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
.|.-|..-+..+|..++.+...+..||..|+.-
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677889999999999999999998774
No 169
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.31 E-value=2.1e+02 Score=21.56 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
..+|..++++...|..+|..|..++..+..+
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455566666667777777777777766655
No 170
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=22.84 E-value=3.6e+02 Score=20.79 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
.|++++|+.++-..+...-......-..++..++..+..+...|+.--..|...+.
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 111 (139)
T cd01110 56 LGLSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCIG 111 (139)
T ss_pred cCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889998886544322110111111233444455556555555555555655553
No 171
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=22.79 E-value=3.5e+02 Score=20.67 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
-|+|++|+..+-......- . ...-...+.+++..+..+...|.+--..|...+....
T Consensus 56 ~GfsL~eI~~ll~~~~~~~-~-~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 56 AGFSLDEIRQLLPADASNW-Q-HDELLAALERKVADIEALEARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred cCCCHHHHHHHHhcccCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877654321110 0 1111235666777777777777766666766665443
No 172
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.79 E-value=2.4e+02 Score=18.72 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
+..+...+......|+.+|..|+.-+.
T Consensus 31 vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 31 VLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455678899999887664
No 173
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.54 E-value=2e+02 Score=24.77 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHh
Q 027190 158 KLLEENKNLKQKVAS 172 (227)
Q Consensus 158 ~l~eeN~~L~~~~~~ 172 (227)
.+.+||..|++.+..
T Consensus 97 ~l~~en~~L~~lL~~ 111 (276)
T PRK13922 97 QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHhcC
Confidence 678999999998754
No 174
>PF11184 DUF2969: Protein of unknown function (DUF2969); InterPro: IPR021351 This family of proteins with unknown function appears to be restricted to Lactobacillales.
Probab=22.46 E-value=65 Score=22.31 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=42.1
Q ss_pred CCc--cccceeeecCC----cccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCC--CchhHHHhhhhc
Q 027190 1 MAR--EKIKIRKIDNI----TARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS--SSMKDIIARYNM 71 (227)
Q Consensus 1 MgR--~Ki~ik~Ien~----~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s--~sm~~ileRY~~ 71 (227)
|.| ++|+|.-+|.+ .--+|+--||.-|-+... |-.. .++.+++..+.|-| ..++.+|..|..
T Consensus 1 MSKK~K~IeI~i~d~~~~~~~~~~l~Igkk~IG~I~e~-------d~~f--av~~~~~~~~~~Ks~deAve~iI~~ynL 70 (71)
T PF11184_consen 1 MSKKNKKIEIEIKDTKVNGQPGYELFIGKKVIGEIEED-------DGRF--AVVKNDNVEFFVKSLDEAVEAIIREYNL 70 (71)
T ss_pred CCCcccceEEEEEecccCCeEEEEEEECCEEEEEEEEc-------CCcE--EEEeCCCceEEEcCHHHHHHHHHHHhcC
Confidence 444 47888877766 466777788888754332 4454 55666677776766 379999999964
No 175
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.41 E-value=1.5e+02 Score=32.09 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred EEEecCCCCccccCCCchhHHHhhhhccccccccCCCCchhHHhHHHHhhhhHHHHHHHhhhhhhcc-------------
Q 027190 45 VIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMR------------- 111 (227)
Q Consensus 45 livfs~~gkl~~~~s~sm~~ileRY~~~s~~~~~~~~~~~~~q~~~~e~~kLkkei~~l~~~lR~l~------------- 111 (227)
+++|.+.|++..| .++.+||..|..+ .-..........+.++..++..+....|-+.
T Consensus 963 m~~~d~~g~i~~~--~~~~~Il~~f~~~--------Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~ 1032 (1388)
T PTZ00108 963 MVLFDENGKIKKY--SDALDILKEFYLV--------RLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAK 1032 (1388)
T ss_pred EEEEeCCCCccee--CCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCC
Q ss_pred ----CCCCCCCCHHHHHH-------------------------------------HHHHHHHHhHHHHHHHHHHHHHHHH
Q 027190 112 ----GEDLHGLTIEELQH-------------------------------------LETMLEQGLSRVLQTKGDRIMNEIS 150 (227)
Q Consensus 112 ----GedL~~Lsl~EL~~-------------------------------------LE~~Le~~L~~Vr~rK~q~l~~eI~ 150 (227)
=++|..+.+..... .+-.|...|..+-..+.+.|.++++
T Consensus 1033 k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~ 1112 (1388)
T PTZ00108 1033 KKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELE 1112 (1388)
T ss_pred HHHHHHHHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 027190 151 TLERKGAKLL 160 (227)
Q Consensus 151 ~L~~ke~~l~ 160 (227)
.++.....|.
T Consensus 1113 ~~~~e~~~L~ 1122 (1388)
T PTZ00108 1113 KKEKELEKLK 1122 (1388)
T ss_pred HHHHHHHHHH
No 176
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.33 E-value=4.6e+02 Score=21.84 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027190 121 EELQHLETMLEQ 132 (227)
Q Consensus 121 ~EL~~LE~~Le~ 132 (227)
++|..+-..|+.
T Consensus 70 edLk~~~~~lEE 81 (193)
T PF14662_consen 70 EDLKTLAKSLEE 81 (193)
T ss_pred HHHHHHHHHHHH
Confidence 334443333443
No 177
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.27 E-value=2.4e+02 Score=18.57 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027190 147 NEISTLE 153 (227)
Q Consensus 147 ~eI~~L~ 153 (227)
+.|+.+.
T Consensus 28 ~~ve~i~ 34 (55)
T PF05377_consen 28 ESVEKIE 34 (55)
T ss_pred HHHHHHH
Confidence 3333333
No 178
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=21.97 E-value=73 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=20.0
Q ss_pred ccCCceEEEEecCCCCccccCCC-chhHHHhhh
Q 027190 38 LCDAEVGVIIFSATGKLFESSSS-SMKDIIARY 69 (227)
Q Consensus 38 LCdaevalivfs~~gkl~~~~s~-sm~~ileRY 69 (227)
.|+.-.+++| .|.+|...++ .+.+|++.|
T Consensus 51 ~C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 51 ACDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred cCCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 3766666666 3788887775 688888764
No 179
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=21.92 E-value=63 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=17.8
Q ss_pred hhhccCCceEEEEecC-----CCCccccCCC
Q 027190 35 LSVLCDAEVGVIIFSA-----TGKLFESSSS 60 (227)
Q Consensus 35 LsvLCdaevalivfs~-----~gkl~~~~s~ 60 (227)
.-|-||+.+.|||-.+ +||+| |+-|
T Consensus 19 v~ie~dcnakvvvats~dpvts~kly-fscp 48 (122)
T PF05325_consen 19 VPIECDCNAKVVVATSRDPVTSGKLY-FSCP 48 (122)
T ss_pred cceeccCCceEEEEeccCCcccceee-ecCc
Confidence 3578999988888764 67887 4433
No 180
>PTZ00370 STEVOR; Provisional
Probab=21.86 E-value=1.2e+02 Score=26.98 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=26.8
Q ss_pred eeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCC-CchhHHHhhhhc
Q 027190 8 IRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-SSMKDIIARYNM 71 (227)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s-~sm~~ileRY~~ 71 (227)
+-.|.|.+.|. |-+-| .||..|. ++| .|-+ |.|++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~sR------------~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKSR------------LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-cccee------------ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 34566666655 32222 5777775 555 3555 789999999975
No 181
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.85 E-value=7.2e+02 Score=25.14 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+|+.+.|..+|..|+++......-|+.|-++|
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666777777777666666666665554
No 182
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=21.80 E-value=6.3e+02 Score=24.45 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCcc
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAK-LLEENKNLKQKVASSCKGKRV 179 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~-l~eeN~~L~~~~~~~~~~~~~ 179 (227)
++.|.+.-..++.+|..+-++-...+..+|+.|++|... ....+....+|+..+...-.|
T Consensus 439 ~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~~l~q~~~l~~~L~P 499 (542)
T PF10079_consen 439 FEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKRKHETALRQLDRLENSLFP 499 (542)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC
Confidence 455666666667777777777777888999999998654 455556667777666554333
No 183
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=21.74 E-value=20 Score=25.26 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=26.7
Q ss_pred cchhhhhccchhhh---------hhHhhhhccCCceEEEEecCCCC
Q 027190 17 RQVTFSKRRRGLFK---------KAEELSVLCDAEVGVIIFSATGK 53 (227)
Q Consensus 17 RqvTfsKRr~GL~K---------KA~ELsvLCdaevalivfs~~gk 53 (227)
+-+-||+-|++|-. ++.|+.+-||.|.-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 33456777766644 56789999999999999999887
No 184
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.35 E-value=8.9e+02 Score=24.76 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=16.0
Q ss_pred hhHHhHHHHhhhhHHHHHHHhhhhhh
Q 027190 84 LELQLENSKYLSLSREIADKSRQLRQ 109 (227)
Q Consensus 84 ~~~q~~~~e~~kLkkei~~l~~~lR~ 109 (227)
+.+|-.+.+.+.|+.++..|...+|.
T Consensus 387 LA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444566666777777766666654
No 185
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=21.22 E-value=37 Score=29.78 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=24.8
Q ss_pred hhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCc
Q 027190 19 VTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61 (227)
Q Consensus 19 vTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~s 61 (227)
+||.+|. ||+ +--+..++++.| .||.|.|+|+.
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~ 242 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSRE 242 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCHH
Confidence 5677664 755 455788898888 78999999863
No 186
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.18 E-value=4.9e+02 Score=23.76 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 130 LEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 130 Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
||..+.+.++++.+ +.-+++.+.+.-.+..+|++.|-+.++
T Consensus 132 LE~li~~~~EEn~~-lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 132 LEGLIRHLREENQC-LQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44444544555433 344566666655555666666655543
No 187
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.09 E-value=2.9e+02 Score=27.21 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=9.8
Q ss_pred HHHHhhhhHHHHHHHhhh
Q 027190 89 ENSKYLSLSREIADKSRQ 106 (227)
Q Consensus 89 ~~~e~~kLkkei~~l~~~ 106 (227)
.+.++..|+++++.+..+
T Consensus 85 Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666665543
No 188
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.01 E-value=3.8e+02 Score=28.14 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
..|-..|..+.+..+.|-.+|++||..|.-+-+.+.
T Consensus 307 kqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 307 KQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556677888888899999999999887755544
No 189
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=20.88 E-value=96 Score=22.01 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=22.5
Q ss_pred hhhhhHhhhhcc----CCceEEEEecCCCCcccc
Q 027190 28 LFKKAEELSVLC----DAEVGVIIFSATGKLFES 57 (227)
Q Consensus 28 L~KKA~ELsvLC----daevalivfs~~gkl~~~ 57 (227)
+|+.|.+++-.. ...|+.||++++|+....
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~ 40 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIAT 40 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCccEEE
Confidence 567777777666 888999999987765543
No 190
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.74 E-value=5.6e+02 Score=22.96 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+..+|-.|+++.+.+.-||..|...+...
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45677788888888999999998887554
No 191
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=20.73 E-value=2.1e+02 Score=28.54 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 027190 155 KGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 155 ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
....|+.||..|+.++..+..+
T Consensus 567 ~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC
Confidence 3456888888888888665544
No 192
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.70 E-value=2.3e+02 Score=19.28 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
+..+..|+.+++|++.|+.-.-..+-.++++..+
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~LhDLAEg 35 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMELHDLAEG 35 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 3456778888888888888777777777776655
No 193
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=62 Score=27.49 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=14.2
Q ss_pred CCceEEEEecCCCCccc
Q 027190 40 DAEVGVIIFSATGKLFE 56 (227)
Q Consensus 40 daevalivfs~~gkl~~ 56 (227)
+-|--+.||||.|+||.
T Consensus 8 gfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CccceEEEECCCceEEe
Confidence 45667899999999986
No 194
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.45 E-value=1.1e+02 Score=16.47 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHhhhh
Q 027190 93 YLSLSREIADKSRQL 107 (227)
Q Consensus 93 ~~kLkkei~~l~~~l 107 (227)
+..++.+|.+|+.+|
T Consensus 3 ~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 3 MNRLRNRISDLERQL 17 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666666544
No 195
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.45 E-value=8e+02 Score=23.88 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=14.5
Q ss_pred hhHhhhhccCCceEEEEec-CCC------CccccCCC
Q 027190 31 KAEELSVLCDAEVGVIIFS-ATG------KLFESSSS 60 (227)
Q Consensus 31 KA~ELsvLCdaevalivfs-~~g------kl~~~~s~ 60 (227)
+||.|----| +-=..+|. ..| .+|.|..|
T Consensus 78 ~ayyLPk~~~-e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKDDD-EFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCCCC-CeEEEEEECCCccEEEecCCcccCCC
Confidence 4666665433 33333333 344 46777654
No 196
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=20.33 E-value=5.7e+02 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 125 HLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKL 159 (227)
Q Consensus 125 ~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l 159 (227)
|.+.-|+..|.++..-....+.+|+++|+++...+
T Consensus 412 qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l 446 (800)
T TIGR01063 412 QAQAILDMRLQRLTGLEREKLQEEYKELLELIADL 446 (800)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888887888888888888765443
No 197
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.32 E-value=3.5e+02 Score=22.09 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.++|..++.+...|..+|..|.++.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666665554
No 198
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.23 E-value=2.7e+02 Score=18.40 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 141 KGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 141 K~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|...|..+|..|..|+..|..+-..|+..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554
No 199
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=20.09 E-value=66 Score=23.85 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=16.7
Q ss_pred hhHhhhhccCCceEEEEecCCCC
Q 027190 31 KAEELSVLCDAEVGVIIFSATGK 53 (227)
Q Consensus 31 KA~ELsvLCdaevalivfs~~gk 53 (227)
=|.+++.-++|+ |+|||+.+|.
T Consensus 7 aa~~~A~~~~ak-~Ivv~T~sG~ 28 (117)
T PF02887_consen 7 AAVELAEDLNAK-AIVVFTESGR 28 (117)
T ss_dssp HHHHHHHHHTES-EEEEE-SSSH
T ss_pred HHHHHHHhcCCC-EEEEECCCch
Confidence 366778888877 8999999885
Done!