Query 027190
Match_columns 227
No_of_seqs 217 out of 1574
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 6.2E-41 2.1E-45 236.5 3.1 73 2-74 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.6E-40 8.8E-45 239.0 3.1 75 2-76 1-75 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 9.8E-39 3.4E-43 234.5 2.4 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 1.5E-38 5.2E-43 230.6 1.8 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 6.6E-38 2.2E-42 231.5 2.1 69 1-69 9-77 (103)
6 2w6a_A ARF GTPase-activating p 86.8 4.7 0.00016 26.0 7.4 53 116-168 8-62 (63)
7 2oqq_A Transcription factor HY 84.1 3.6 0.00012 24.6 5.5 30 142-171 12-41 (42)
8 2dgc_A Protein (GCN4); basic d 82.1 5 0.00017 26.2 6.3 36 135-174 22-57 (63)
9 2jee_A YIIU; FTSZ, septum, coi 82.0 10 0.00035 26.1 9.2 43 118-165 3-45 (81)
10 1dip_A Delta-sleep-inducing pe 81.7 2.3 7.9E-05 28.7 4.5 29 142-170 17-45 (78)
11 1dh3_A Transcription factor CR 81.3 6.1 0.00021 25.0 6.3 37 135-175 14-50 (55)
12 1j1d_C Troponin I, TNI; THIN f 80.6 10 0.00036 28.5 8.4 55 113-175 53-107 (133)
13 2dfs_A Myosin-5A; myosin-V, in 77.7 18 0.00061 36.4 11.5 25 150-174 1019-1043(1080)
14 3s9g_A Protein hexim1; cyclin 77.1 8.1 0.00028 27.5 6.3 27 146-172 64-90 (104)
15 2yy0_A C-MYC-binding protein; 76.4 5.9 0.0002 25.0 5.0 28 144-171 23-50 (53)
16 2wt7_A Proto-oncogene protein 74.7 11 0.00039 24.3 6.3 36 135-174 15-50 (63)
17 1t2k_D Cyclic-AMP-dependent tr 73.8 12 0.00043 23.8 6.3 36 135-174 14-49 (61)
18 1gd2_E Transcription factor PA 73.1 11 0.00037 25.2 5.9 39 135-173 21-62 (70)
19 1jnm_A Proto-oncogene C-JUN; B 72.4 14 0.00048 23.7 6.3 37 135-175 14-50 (62)
20 1ci6_A Transcription factor AT 72.4 14 0.00048 23.9 6.3 36 135-174 15-50 (63)
21 1go4_E MAD1 (mitotic arrest de 69.7 4.1 0.00014 29.3 3.4 22 153-174 74-95 (100)
22 1j1e_C Troponin I, TNI; THIN f 68.7 19 0.00066 28.4 7.4 54 113-174 53-106 (180)
23 2jee_A YIIU; FTSZ, septum, coi 64.4 17 0.00059 24.9 5.6 34 139-172 12-45 (81)
24 3hnw_A Uncharacterized protein 63.5 45 0.0015 25.0 8.9 24 146-169 109-132 (138)
25 1ytz_T Troponin T; muscle, THI 62.9 16 0.00056 26.4 5.5 54 112-173 36-89 (107)
26 3oja_B Anopheles plasmodium-re 60.9 80 0.0027 28.6 11.4 27 147-173 551-577 (597)
27 3hnw_A Uncharacterized protein 60.8 50 0.0017 24.7 10.6 27 147-173 103-129 (138)
28 1fxk_A Prefoldin; archaeal pro 60.5 9.9 0.00034 26.8 4.0 52 110-172 53-104 (107)
29 1ci6_A Transcription factor AT 59.5 26 0.00088 22.6 5.6 32 141-172 31-62 (63)
30 1a93_B MAX protein, coiled coi 59.2 16 0.00056 20.8 3.9 24 139-162 6-29 (34)
31 3m9b_A Proteasome-associated A 58.8 17 0.00057 30.4 5.6 42 121-167 54-95 (251)
32 1j1d_B Troponin T, TNT; THIN f 58.6 16 0.00055 26.4 4.8 52 114-173 38-89 (106)
33 2oxj_A Hybrid alpha/beta pepti 58.0 16 0.00054 20.8 3.6 25 149-173 3-27 (34)
34 3nmd_A CGMP dependent protein 57.0 41 0.0014 22.5 7.2 46 123-173 21-66 (72)
35 1t2k_D Cyclic-AMP-dependent tr 56.4 30 0.001 21.9 5.5 29 142-170 31-59 (61)
36 2l16_A SEC-independent protein 55.9 0.41 1.4E-05 33.0 -3.9 30 43-74 16-45 (78)
37 3gp4_A Transcriptional regulat 54.5 64 0.0022 24.0 8.4 59 116-175 58-116 (142)
38 1hjb_A Ccaat/enhancer binding 53.5 48 0.0016 22.9 6.4 25 150-174 39-63 (87)
39 3m48_A General control protein 52.0 19 0.00064 20.4 3.3 24 150-173 3-26 (33)
40 1gd2_E Transcription factor PA 52.0 28 0.00097 23.1 4.9 23 145-167 48-70 (70)
41 1q08_A Zn(II)-responsive regul 50.7 56 0.0019 22.2 7.5 58 117-174 16-73 (99)
42 1go4_E MAD1 (mitotic arrest de 50.4 24 0.00083 25.2 4.6 27 147-173 12-38 (100)
43 1gu4_A CAAT/enhancer binding p 50.3 56 0.0019 22.1 6.4 28 148-175 37-64 (78)
44 1deb_A APC protein, adenomatou 49.9 28 0.00096 21.6 4.1 25 150-174 6-30 (54)
45 4gfh_A DNA topoisomerase 2; to 48.7 50 0.0017 33.6 8.2 43 26-72 958-1000(1177)
46 2l5g_B Putative uncharacterize 48.0 42 0.0014 20.0 5.2 38 118-163 2-39 (42)
47 1kd8_B GABH BLL, GCN4 acid bas 47.8 28 0.00095 20.0 3.6 20 151-170 5-24 (36)
48 1nkp_B MAX protein, MYC proto- 46.3 38 0.0013 22.7 5.0 28 146-173 53-80 (83)
49 3c3f_A Alpha/beta peptide with 44.1 35 0.0012 19.3 3.6 23 150-172 4-26 (34)
50 1t6f_A Geminin; coiled-coil, c 41.6 49 0.0017 19.0 4.5 25 143-167 10-34 (37)
51 2zqm_A Prefoldin beta subunit 41.2 26 0.0009 24.8 3.7 32 143-174 80-111 (117)
52 1p9i_A Cortexillin I/GCN4 hybr 40.6 35 0.0012 18.3 3.1 17 157-173 9-25 (31)
53 2v71_A Nuclear distribution pr 40.4 1.4E+02 0.0047 23.7 10.5 26 148-173 89-114 (189)
54 3gpv_A Transcriptional regulat 39.3 1.2E+02 0.004 22.6 8.3 58 116-174 72-129 (148)
55 1am9_A Srebp-1A, protein (ster 39.0 52 0.0018 22.2 4.7 27 147-173 50-76 (82)
56 1nkp_A C-MYC, MYC proto-oncoge 39.0 77 0.0026 21.7 5.7 25 150-174 62-86 (88)
57 2l5g_A GPS2 protein, G protein 38.7 49 0.0017 19.2 3.7 22 147-168 15-36 (38)
58 3q4f_C DNA repair protein XRCC 37.7 36 0.0012 26.9 4.1 23 147-169 161-183 (186)
59 3mq7_A Bone marrow stromal ant 37.4 1.2E+02 0.0041 22.2 8.3 34 140-173 71-104 (121)
60 1gk7_A Vimentin; intermediate 36.8 63 0.0021 18.8 4.4 27 145-171 11-37 (39)
61 3w03_C DNA repair protein XRCC 36.4 51 0.0018 26.1 4.9 28 145-172 150-177 (184)
62 2bni_A General control protein 36.1 51 0.0017 18.7 3.4 22 151-172 5-26 (34)
63 3na7_A HP0958; flagellar bioge 36.0 1.6E+02 0.0055 23.9 8.3 20 119-138 88-107 (256)
64 3c3g_A Alpha/beta peptide with 35.6 60 0.002 18.2 4.2 22 151-172 4-25 (33)
65 1hjb_A Ccaat/enhancer binding 35.6 93 0.0032 21.4 5.6 34 141-174 44-77 (87)
66 2yy0_A C-MYC-binding protein; 34.2 74 0.0025 19.7 4.5 26 148-173 20-45 (53)
67 2oa5_A Hypothetical protein BQ 33.6 26 0.00089 25.4 2.5 24 149-172 10-33 (110)
68 1ytz_I Troponin I; muscle, THI 32.7 1.4E+02 0.0046 23.6 6.8 54 113-175 51-104 (182)
69 1jnm_A Proto-oncogene C-JUN; B 31.9 42 0.0015 21.3 3.2 26 145-170 34-59 (62)
70 2hy6_A General control protein 31.6 67 0.0023 18.1 3.4 23 150-172 4-26 (34)
71 1uii_A Geminin; human, DNA rep 31.3 1.2E+02 0.004 20.8 5.4 26 145-170 51-76 (83)
72 3v1a_A Computational design, M 31.2 71 0.0024 19.6 3.9 31 135-165 15-45 (48)
73 1wlq_A Geminin; coiled-coil; 2 31.2 67 0.0023 22.0 4.1 25 145-169 43-67 (83)
74 1z0k_B FYVE-finger-containing 31.0 1.1E+02 0.0038 20.2 5.1 20 146-165 45-64 (69)
75 1nlw_A MAD protein, MAX dimeri 31.0 85 0.0029 21.1 4.7 23 148-170 48-70 (80)
76 1m2d_A [2Fe-2S] ferredoxin; th 30.1 27 0.00091 24.8 2.1 32 39-71 59-91 (110)
77 2aze_A Transcription factor DP 29.6 1.9E+02 0.0065 22.1 7.5 50 118-169 2-51 (155)
78 1r8e_A Multidrug-efflux transp 29.5 1.1E+02 0.0037 24.7 6.2 50 117-166 63-112 (278)
79 1g6u_A Domain swapped dimer; d 29.5 89 0.0031 18.3 4.6 17 116-132 15-31 (48)
80 1kd8_A GABH AIV, GCN4 acid bas 29.5 54 0.0018 18.8 2.8 18 153-170 7-24 (36)
81 3s9g_A Protein hexim1; cyclin 29.0 1.5E+02 0.0053 20.9 7.7 86 56-169 9-94 (104)
82 2zxx_A Geminin; coiled-coil, c 29.0 61 0.0021 22.0 3.6 25 145-169 39-63 (79)
83 2w6b_A RHO guanine nucleotide 28.3 1.1E+02 0.0039 19.2 4.8 28 145-172 8-35 (56)
84 2v66_B Nuclear distribution pr 28.3 1.7E+02 0.0057 21.1 10.4 67 92-172 36-102 (111)
85 3s4r_A Vimentin; alpha-helix, 28.2 1.5E+02 0.0051 20.5 8.3 31 143-173 52-82 (93)
86 2v71_A Nuclear distribution pr 28.1 2.2E+02 0.0076 22.4 10.7 19 144-162 67-85 (189)
87 2aze_B Transcription factor E2 27.4 1.1E+02 0.0037 21.8 5.0 37 140-176 6-42 (106)
88 4dyl_A Tyrosine-protein kinase 27.2 2.6E+02 0.0089 24.3 8.6 80 89-177 307-396 (406)
89 2vz4_A Tipal, HTH-type transcr 27.2 87 0.003 21.8 4.5 48 116-170 57-104 (108)
90 1r8d_A Transcription activator 25.7 1.1E+02 0.0037 21.3 4.8 47 117-170 59-105 (109)
91 1yzm_A FYVE-finger-containing 25.3 1.3E+02 0.0043 18.7 5.3 33 135-167 16-48 (51)
92 1nlw_A MAD protein, MAX dimeri 23.9 1.5E+02 0.0051 19.8 5.0 25 147-171 54-78 (80)
93 2xus_A Breast cancer metastasi 23.7 1.3E+02 0.0046 18.4 5.6 33 120-159 12-44 (49)
94 3u1c_A Tropomyosin alpha-1 cha 23.6 1.9E+02 0.0065 20.1 8.5 57 95-160 41-99 (101)
95 1kaf_A Transcription regulator 23.0 15 0.00051 26.6 -0.4 52 6-72 23-75 (108)
96 3h4p_A Proteasome subunit alph 22.4 16 0.00056 30.3 -0.3 18 41-58 12-31 (264)
97 1q06_A Transcriptional regulat 22.2 2.3E+02 0.0078 20.5 6.7 56 116-172 56-111 (135)
98 3iyn_Q Protein IX, PIX, hexon- 22.1 1.9E+02 0.0063 21.4 5.4 36 135-170 93-128 (140)
99 2rpa_A Katanin P60 ATPase-cont 22.0 7.9 0.00027 26.4 -1.9 34 29-73 16-49 (78)
100 3k2m_A Proto-oncogene tyrosine 21.5 75 0.0026 22.1 3.2 43 32-74 40-87 (112)
101 2wvr_A Geminin; DNA replicatio 21.2 1.7E+02 0.0059 23.4 5.4 24 145-168 120-143 (209)
102 2wt7_B Transcription factor MA 21.0 2.1E+02 0.0073 19.7 9.7 57 116-172 16-80 (90)
103 1lwu_C Fibrinogen gamma chain; 20.3 3.1E+02 0.011 23.4 7.4 22 147-168 33-54 (323)
104 2jo8_A Serine/threonine-protei 20.3 1.5E+02 0.0051 18.4 3.9 18 115-132 7-24 (51)
105 3hvz_A Uncharacterized protein 20.1 60 0.002 21.7 2.3 25 44-68 7-32 (78)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=6.2e-41 Score=236.54 Aligned_cols=73 Identities=47% Similarity=0.767 Sum_probs=70.1
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcccc
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~s~ 74 (227)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|++|++||+||..++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999997753
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.6e-40 Score=238.99 Aligned_cols=75 Identities=45% Similarity=0.733 Sum_probs=72.4
Q ss_pred CccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcccccc
Q 027190 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNI 76 (227)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~s~~~ 76 (227)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|.+||+||..++...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPH 75 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999886543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=9.8e-39 Score=234.52 Aligned_cols=71 Identities=41% Similarity=0.584 Sum_probs=69.6
Q ss_pred CCccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhc
Q 027190 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNM 71 (227)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~ 71 (227)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+|..||+||..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999964
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.5e-38 Score=230.64 Aligned_cols=70 Identities=37% Similarity=0.520 Sum_probs=68.7
Q ss_pred CCccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhh
Q 027190 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN 70 (227)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~ 70 (227)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.6e-38 Score=231.53 Aligned_cols=69 Identities=38% Similarity=0.525 Sum_probs=68.0
Q ss_pred CCccccceeeecCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhh
Q 027190 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY 69 (227)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY 69 (227)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 6
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=86.75 E-value=4.7 Score=26.03 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~--rK~q~l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
+..++.|..++.+.|..+=.+|.. +-+.-+.+++.-|+++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 356788888887777765443321 11223457888899999999999999874
No 7
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=84.07 E-value=3.6 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
.+-+...+.+|..+..-|+.||..||+-+.
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344556678888999999999999998763
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.10 E-value=5 Score=26.18 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+.|.||. +.+..|..+...|..+|..|..++..+.
T Consensus 22 rrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 22 RRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566664 5678899999999999999999987654
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.99 E-value=10 Score=26.09 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN 165 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~ 165 (227)
+|++=|.+||..+..++..| .++..+|+.|+.+-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999988888654 34445566666665554444444
No 10
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.75 E-value=2.3 Score=28.70 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.+.+.++|.+|..+...|+.||..|+.-.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678899999999999999999998764
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.26 E-value=6.1 Score=25.03 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
.+-|.||. ..++.|..++..|..+|..|+.++..+..
T Consensus 14 ~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 14 RESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466664 46788999999999999999999977653
No 12
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=80.60 E-value=10 Score=28.52 Aligned_cols=55 Identities=31% Similarity=0.349 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 113 edL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
-++++||.++|+.+=+.|-..+..+-+.|+. +..+...-.-|-..|+.+|.++.+
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYD--------lE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYD--------IEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHcchHHHHHHHHHHHHHc
Confidence 4799999999999999998888777666654 334444444555677777777643
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.66 E-value=18 Score=36.40 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 150 STLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+.|+.+...|.+||..|++++.++.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999988765
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.06 E-value=8.1 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
-.+|..|..+...|..||+.|+++=+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888888887544
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.42 E-value=5.9 Score=24.98 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 144 RIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
.|..++..|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778888888888888888888874
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.68 E-value=11 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+-|.+|. +.+..|+.+...|..+|..|..+|..+.
T Consensus 15 ~rcR~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 15 AKCRNRRR----ELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456654 4678888888889999999988886654
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.79 E-value=12 Score=23.85 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+.|.+|. +.+..|..+...|..+|..|..+|..+.
T Consensus 14 ~k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 14 SRSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566654 3567788888888888888888876654
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.08 E-value=11 Score=25.17 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 135 SRVLQTKGDRI---MNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 135 ~~Vr~rK~q~l---~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
...|+||.+-| ..++..|......+..||..|+.+|..+
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665543 2345555555555667777777766554
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.44 E-value=14 Score=23.72 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
.+-|.+|. +.+..|..+...|..+|..|..+|..+..
T Consensus 14 ~k~R~rKk----~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 14 SKSRKRKL----ERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 46788888999999999999998876543
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.38 E-value=14 Score=23.92 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
.+-|.+|. +.+..|..+...|..+|..|+.+|..+.
T Consensus 15 ~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 15 TRYRQKKR----AEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454443 4566777777777777777777776554
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.75 E-value=4.1 Score=29.28 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 027190 153 ERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 153 ~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
++....|+.|+..|+..|..+.
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567888888888875543
No 22
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=68.68 E-value=19 Score=28.45 Aligned_cols=54 Identities=31% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 113 edL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
-++++||.++|+.+=+.|-..+..+-+.|+.+ ..+...-.-|-..|+.+|.++.
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDl--------E~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDI--------EAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHhcchhHHHHHHHHHHHH
Confidence 48899999999999999988888777776653 3333333334455556665554
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.45 E-value=17 Score=24.94 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.|.+...+.|.-|+.....|.++|..|..+..+
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666665544
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.50 E-value=45 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 146 MNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
..++..|+++...|+.++..|...
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 25
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=62.88 E-value=16 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 112 GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
--++++||.++|+.+=+.|-..+..+-+.|.. |..+...-.-|-..|+.+|.++
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYD--------lE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYD--------FAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhhhhHHHHHHHHHHHh
Confidence 34889999999999999988887776666654 4444444555667888888777
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.93 E-value=80 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 147 NEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+++..+++..++.+|+..+++++..+
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666666666666544
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.82 E-value=50 Score=24.75 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 147 NEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+++.+.+....|.+++..|..++..+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777776554
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.50 E-value=9.9 Score=26.76 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=32.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 110 MRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 110 l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.|.-+-..+.++... .| - .+.+.+...|..|.++...+..+-..|+.++..
T Consensus 53 ~iG~vfv~~~~~e~~~---~L-------~-~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 53 SSGNILIRVAKDELTE---EL-------Q-EKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp EETTEEEEECHHHHHH---HH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHhccHHHHHH---HH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666543 22 2 222345577888888888888888888887744
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.45 E-value=26 Score=22.61 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 141 KGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 141 K~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.+.+..+...|+.+...|..|+..|+.-|.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445667778888888888899888877644
No 30
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.15 E-value=16 Score=20.81 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 139 QTKGDRIMNEISTLERKGAKLLEE 162 (227)
Q Consensus 139 ~rK~q~l~~eI~~L~~ke~~l~ee 162 (227)
.||.+-....|++|+++-..|.++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHH
Confidence 366666677777777665555444
No 31
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.83 E-value=17 Score=30.35 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 121 ~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
+.+.+|+.+++. ...|++.|.+.+..++++...|++|+..|+
T Consensus 54 ~~l~eL~~ql~~-----L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDS-----LAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHH-----HTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666666554 344555555666666655555555555443
No 32
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=58.59 E-value=16 Score=26.39 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 114 dL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
++++||.++|+.+=+.|-..+..+-+.|..+ ..+...-.-|-..|+.+|.++
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl--------E~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL--------QEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHhhhHHHHHHHHHHHHh
Confidence 7899999999999999988887777666543 334444444556677777665
No 33
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.95 E-value=16 Score=20.76 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 149 ISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+.|..|+..|..+|..|..++.-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666667777777777766543
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.05 E-value=41 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 123 LQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 123 L~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+.+|+..|......+|.+- ..|..|.+......++...|+.++...
T Consensus 21 i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777766666654 347888888888888889999988664
No 35
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.35 E-value=30 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 142 GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 142 ~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
...+..+...|+.....|.+|+..|+..|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677778888888888888888765
No 36
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=55.95 E-value=0.41 Score=33.00 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=22.6
Q ss_pred eEEEEecCCCCccccCCCchhHHHhhhhcccc
Q 027190 43 VGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74 (227)
Q Consensus 43 valivfs~~gkl~~~~s~sm~~ileRY~~~s~ 74 (227)
||||||+| +||++.+ .++.+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~-r~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIG-RAAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHH-HHHHHHHHHHHHHHH
Confidence 78999998 6998876 457777777776543
No 37
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.54 E-value=64 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
-|++++++..+-.....+-..+. ...+++.+++..+..+...|+.....|..++.....
T Consensus 58 ~G~sL~eIk~~l~~~~~~~~~~~-~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 58 AGLSIEALIDYLALFREGEHTLE-ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TTCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999888665544322222 234566777778888777777777777777765443
No 38
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.51 E-value=48 Score=22.93 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 150 STLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
..++.+...|..||..|+.+|+.+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666555443
No 39
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=52.02 E-value=19 Score=20.36 Aligned_cols=24 Identities=42% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 150 STLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+.|..|+..|..+|..|..+|.-+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356667777777888777777543
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.01 E-value=28 Score=23.08 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
+..++..|+.....|..||..|+
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777788888888888877653
No 41
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=50.67 E-value=56 Score=22.19 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
|+|++|+..+-.....+-......-..++.+++..+..+...|..--..|...+....
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999988554332110011223356677777777777777777777777776544
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.40 E-value=24 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 147 NEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
++++.|+++...|..||..|++.+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666665543
No 43
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=50.34 E-value=56 Score=22.08 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 148 EISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
....++.+...|..||..|+.+|..+..
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888766543
No 44
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=49.94 E-value=28 Score=21.60 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 150 STLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+.|-+++..|..||..|++.+.+..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 3445556667778888888876643
No 45
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=48.67 E-value=50 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.398 Sum_probs=29.1
Q ss_pred chhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 26 RGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 26 ~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
+||+|+- .|.+-..+ .-+++|.+.|++..|. ++++||.-|..+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~--~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYN--SVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECS--SHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcC--CHHHHHHHHHHH
Confidence 4566553 35443333 1578899999998885 478898888654
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.98 E-value=42 Score=19.98 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEEN 163 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN 163 (227)
++-+||.|=-..++.-+.++ .++|..|++|...|.+..
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh
Confidence 44556554434444333322 346888888888777653
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.79 E-value=28 Score=19.97 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027190 151 TLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 151 ~L~~ke~~l~eeN~~L~~~~ 170 (227)
.|.-|+.+|..+|..|..+|
T Consensus 5 QLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33444444444444444444
No 48
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.35 E-value=38 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 146 MNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
..++..|+.....|..+|..|..++..+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666667777788888777554
No 49
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.15 E-value=35 Score=19.26 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027190 150 STLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.|..|+..|..+|..|..+|+-
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 44555555666666666666543
No 50
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.65 E-value=49 Score=18.96 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
+.+..+|+.=......|.++|..|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445556655566667777777664
No 51
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.21 E-value=26 Score=24.83 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+.+...|..|.++...+..+-..|+.++...-
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899888888998888888887654
No 52
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.58 E-value=35 Score=18.31 Aligned_cols=17 Identities=53% Similarity=0.524 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027190 157 AKLLEENKNLKQKVASS 173 (227)
Q Consensus 157 ~~l~eeN~~L~~~~~~~ 173 (227)
..|..||..|+.+++++
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778888888888775
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.37 E-value=1.4e+02 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 148 EISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+|..|++....|...+..|+.+|.++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667766667777777777666443
No 54
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.29 E-value=1.2e+02 Score=22.59 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
-|++++++..+-.....+-..+ ..-.+++.+++..+..+...|+.....|..++....
T Consensus 72 ~G~sL~eIk~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 72 TGMPIQKIKQFIDWSMEGDSTI-LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TTCCHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988866444332222 223356777888888888888888888888775543
No 55
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.02 E-value=52 Score=22.19 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 147 NEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+-|..|+.....|.+++..|+..+...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888999999999999988654
No 56
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.95 E-value=77 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 150 STLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
..+......|..+|..|+.++..+.
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344457788888888887654
No 57
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.70 E-value=49 Score=19.15 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027190 147 NEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
+||..|+.|...|++|...|--
T Consensus 15 eQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777665543
No 58
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.72 E-value=36 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027190 147 NEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
.+|..|+.+-..|++||.+|..+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888999999999875
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.40 E-value=1.2e+02 Score=22.16 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.+.+-+..+|..|..+...+..+-++|++....+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 3566777888888888888888888888876543
No 60
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=36.80 E-value=63 Score=18.79 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
+.+.....-.|++.|..+|..|..++.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666778889999999988874
No 61
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.42 E-value=51 Score=26.08 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+++.+..|+.+...|+++|.+|+.+-..
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999988654
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=36.11 E-value=51 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027190 151 TLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 151 ~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
.|.-|+..|..+|..|..+|+-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 4444555555555555555543
No 63
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.95 E-value=1.6e+02 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHHhHHHH
Q 027190 119 TIEELQHLETMLEQGLSRVL 138 (227)
Q Consensus 119 sl~EL~~LE~~Le~~L~~Vr 138 (227)
+.+|+..|.+.++..-.++.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56677777766665544443
No 64
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.65 E-value=60 Score=18.21 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027190 151 TLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 151 ~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
.|..|+..|..+|..|..+|+-
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555566666666665543
No 65
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.63 E-value=93 Score=21.42 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027190 141 KGDRIMNEISTLERKGAKLLEENKNLKQKVASSC 174 (227)
Q Consensus 141 K~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~ 174 (227)
+...|..+-..|+.++..|..|...|+.-+..+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4445566777788888888888888888775543
No 66
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.19 E-value=74 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 148 EISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
+++.|+.....|+..+..|..++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444
No 67
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=33.56 E-value=26 Score=25.38 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 149 ISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 149 I~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
.++|..+...|+-||..|+++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777778899999999999854
No 68
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=32.68 E-value=1.4e+02 Score=23.57 Aligned_cols=54 Identities=30% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027190 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCK 175 (227)
Q Consensus 113 edL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~ 175 (227)
-++++ |.++|+.+=+.|-..+..+-+.|+. |..+...-.-|-..|+.+|.++.+
T Consensus 51 Lnid~-se~~L~e~ckELh~~I~~LEeEKYD--------lE~kvkkq~yEI~dL~~rVnDLrG 104 (182)
T 1ytz_I 51 LSLPG-SMQELQELSKKLHAKIDSVDEERYD--------TEVKLQKTNKELEDLSQKLFDLRG 104 (182)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTTTGGGTC
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 47889 9999999999998888776666644 445555555666778888877754
No 69
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.85 E-value=42 Score=21.32 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
+..+...|+.....|.+++..|+..|
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777776655
No 70
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.58 E-value=67 Score=18.14 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027190 150 STLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 150 ~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.|.-|+.+|..+|..|..+|+-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~R 26 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555666666666665543
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.35 E-value=1.2e+02 Score=20.78 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|.++|+.++.....|.++|..|+.-+
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666665543
No 72
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=31.25 E-value=71 Score=19.58 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKN 165 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~ 165 (227)
.-|+..|.+--.+++..|.+...+|..|...
T Consensus 15 ~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 15 SFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3344455555567888888888888777543
No 73
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.15 E-value=67 Score=22.02 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
|.++|+.++.....|.++|..|+.-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666543
No 74
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=31.04 E-value=1.1e+02 Score=20.18 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027190 146 MNEISTLERKGAKLLEENKN 165 (227)
Q Consensus 146 ~~eI~~L~~ke~~l~eeN~~ 165 (227)
.+++..|....++|+++...
T Consensus 45 ~DEV~tLe~NLrEL~~ei~~ 64 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYDQ 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433
No 75
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.96 E-value=85 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027190 148 EISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 148 eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|..|+.++..+..+...|+.+.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554554444444444
No 76
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=30.13 E-value=27 Score=24.75 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=22.9
Q ss_pred cCCceEEEEecCCCCccccCCC-chhHHHhhhhc
Q 027190 39 CDAEVGVIIFSATGKLFESSSS-SMKDIIARYNM 71 (227)
Q Consensus 39 Cdaevalivfs~~gkl~~~~s~-sm~~ileRY~~ 71 (227)
|+.--.|+|+ |+|.+|...++ .+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444445555 88988887775 79999999853
No 77
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=29.65 E-value=1.9e+02 Score=22.13 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 118 Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
-|+.|.+.||..-...+.+|+.++.++ +++...+.--+.|.+-|+.+..+
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888899988888888888776543 22222222233677777666553
No 78
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=29.51 E-value=1.1e+02 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 166 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L 166 (227)
|++++|+..+-..-...+..+-..+.+.+.++|..|+.....|..--..+
T Consensus 63 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (278)
T 1r8e_A 63 GTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRM 112 (278)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777653211122334445555556666666666655555444433
No 79
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.49 E-value=89 Score=18.32 Aligned_cols=17 Identities=41% Similarity=0.603 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQ 132 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~ 132 (227)
+|+|.+||-.||..|..
T Consensus 15 egfspeelaaleselqa 31 (48)
T 1g6u_A 15 EGFSPEELAALESELQA 31 (48)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 68899999999888765
No 80
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.47 E-value=54 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027190 153 ERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 153 ~~ke~~l~eeN~~L~~~~ 170 (227)
.-|+..|..+|..|..+|
T Consensus 7 E~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333334444444444433
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.99 E-value=1.5e+02 Score=20.90 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=48.1
Q ss_pred ccCCCchhHHHhhhhccccccccCCCCchhHHhHHHHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhH
Q 027190 56 ESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLS 135 (227)
Q Consensus 56 ~~~s~sm~~ileRY~~~s~~~~~~~~~~~~~q~~~~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~ 135 (227)
+|-+-....+.++|..- .+..+.. +....+|..|.+.++.++.+.+.+ +.+.+..
T Consensus 9 eFl~KdFSe~YE~~h~E--rL~~mSK-----qELIqEYl~LE~~~s~le~e~~rl-------------r~~~~~~----- 63 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTE--SLQNMSK-----QELIKEYLELEKSLSRMEDENNRL-------------RLESKRL----- 63 (104)
T ss_dssp -----CCHHHHHHHHHH--HHHTSCH-----HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHH--HHHhccH-----HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc-----
Confidence 45556667777887532 2222211 113445666666666665444322 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 136 RVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 136 ~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
..+.+-+..+|+.|+..-..|..||...+++
T Consensus 64 ---~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 ---DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455567788999999999999999988876
No 82
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.97 E-value=61 Score=22.04 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQK 169 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~ 169 (227)
+..+|+.++.....|.++|..|+.-
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666543
No 83
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.32 E-value=1.1e+02 Score=19.15 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
+.+-+-.|+-.+..|+.+|..|++-+++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777666543
No 84
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.25 E-value=1.7e+02 Score=21.10 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=46.0
Q ss_pred HhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 92 KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 92 e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
.+..|++++..++...+.+. ..|..||+.=+. -+|.......-+..+..|-....|.|..|-..|.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~---------~~iReLEq~NDD-----LER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLH---------KYVRELEQANDD-----LERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhchH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777766665552 556666665444 3555556667788888888888899988888876
Q ss_pred h
Q 027190 172 S 172 (227)
Q Consensus 172 ~ 172 (227)
+
T Consensus 102 E 102 (111)
T 2v66_B 102 E 102 (111)
T ss_dssp H
T ss_pred H
Confidence 5
No 85
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.15 E-value=1.5e+02 Score=20.46 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027190 143 DRIMNEISTLERKGAKLLEENKNLKQKVASS 173 (227)
Q Consensus 143 q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~ 173 (227)
.....+|..|+++...+..++..|..++..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999988888888888877654
No 86
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.06 E-value=2.2e+02 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027190 144 RIMNEISTLERKGAKLLEE 162 (227)
Q Consensus 144 ~l~~eI~~L~~ke~~l~ee 162 (227)
.+..+++.++.|-.....+
T Consensus 67 ~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444333
No 87
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.41 E-value=1.1e+02 Score=21.76 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027190 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVASSCKG 176 (227)
Q Consensus 140 rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~~~~~ 176 (227)
.+...+..+|..|..+|..|-+.-..+.+++..+...
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667788888888888887777777777666544
No 88
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=27.21 E-value=2.6e+02 Score=24.28 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=47.8
Q ss_pred HHHHhhhhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHh---------HHHHHHH-HHHHHHHHHHHHHHHHH
Q 027190 89 ENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGL---------SRVLQTK-GDRIMNEISTLERKGAK 158 (227)
Q Consensus 89 ~~~e~~kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L---------~~Vr~rK-~q~l~~eI~~L~~ke~~ 158 (227)
.+..+.+++.++.+++..+... -.++.+|+..++..- ..++.+- .+-...++..|+-.+..
T Consensus 307 lq~~L~~~~~~l~~~~~~~~~k---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 377 (406)
T 4dyl_A 307 VQHTLTSVTDELAVATEMVFRR---------QEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAK 377 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHH
Confidence 4556667777777766554332 144555555554331 1121110 12334677788888888
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 027190 159 LLEENKNLKQKVASSCKGK 177 (227)
Q Consensus 159 l~eeN~~L~~~~~~~~~~~ 177 (227)
|..+-..|..+|.++..+.
T Consensus 378 ~~~q~~~~~~~~~~~~~~~ 396 (406)
T 4dyl_A 378 LQAQQELLQTKLEHLGPGE 396 (406)
T ss_dssp HHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 8999889999998876544
No 89
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.17 E-value=87 Score=21.80 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
-|++++++..+-..-.. .....+.+++..+..+...|+..-..|...+
T Consensus 57 ~G~sl~~I~~~l~~~~~-------~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 57 LGFPLDEVAALLDDPAA-------DPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp TTCCHHHHHHHHTC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778887766322111 1123444555555555555555544554444
No 90
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.71 E-value=1.1e+02 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 117 ~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
|++++++..+-..-. ......+.+++..+..+...|+..-..|...+
T Consensus 59 G~~l~~I~~~l~~~~-------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 59 GFRLDEIKEMLDHPN-------FDRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp TCCHHHHHHHHHCTT-------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888776532111 01223555566666666655555555555444
No 91
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=25.34 E-value=1.3e+02 Score=18.67 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~ 167 (227)
+-|...|.+--.+++..|....++|+++...+.
T Consensus 16 ~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 16 SFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555556788888888888877776654
No 92
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.89 E-value=1.5e+02 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 147 NEISTLERKGAKLLEENKNLKQKVA 171 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~~~~ 171 (227)
++...+......|..+|..|+.+++
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555667777888887774
No 93
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.73 E-value=1.3e+02 Score=18.41 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKL 159 (227)
Q Consensus 120 l~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l 159 (227)
+++|..||++.- .-|+++..+.|..+.++..++
T Consensus 12 ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 466777775543 356677777777777665544
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.63 E-value=1.9e+02 Score=20.13 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhhhhhccCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 027190 95 SLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKG--DRIMNEISTLERKGAKLL 160 (227)
Q Consensus 95 kLkkei~~l~~~lR~l~GedL~~Lsl~EL~~LE~~Le~~L~~Vr~rK~--q~l~~eI~~L~~ke~~l~ 160 (227)
....++..|++.+..+ -+||..++..|..+.......-. ..--.++..|.++...|.
T Consensus 41 ~~E~Ei~sL~kk~~~l---------E~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVT---------EDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555433 14555555555555443332211 111225555555555443
No 95
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=22.97 E-value=15 Score=26.55 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=39.4
Q ss_pred cceeee-cCCcccchhhhhccchhhhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhcc
Q 027190 6 IKIRKI-DNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (227)
Q Consensus 6 i~ik~I-en~~~RqvTfsKRr~GL~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~ 72 (227)
|++|.+ +|.++=.|+|.||-.| +.-+=....|..=-|+..-.++++..|...
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~G---------------iRqfEi~n~G~fRI~gYk~se~~~~~f~sl 75 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNG---------------IRNFEINNNGNMRIFGYKMMEHHIQKFTDI 75 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETT---------------EEEEEECTTSEEEEEEESCCHHHHHHHHTT
T ss_pred ceeeeeEeeccceEEeeecccCc---------------eeEEEEecCCcEEEEEecCCHHHHHHHHhc
Confidence 677776 7889999999999999 555666778866556655557777777654
No 96
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=22.36 E-value=16 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=12.1
Q ss_pred CceEEEEecCCCCccc--cC
Q 027190 41 AEVGVIIFSATGKLFE--SS 58 (227)
Q Consensus 41 aevalivfs~~gkl~~--~~ 58 (227)
-|-++-+|||.|+||. |+
T Consensus 12 yd~~~t~fSp~Grl~QvEYA 31 (264)
T 3h4p_A 12 YDRAITVFSPEGRLYQVEYA 31 (264)
T ss_dssp ----CCCCCSSSSCHHHHHH
T ss_pred cCCCcceECCCCeeHHHHhH
Confidence 3567789999999986 65
No 97
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.18 E-value=2.3e+02 Score=20.51 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
-|++++|+..+-...+.+-... ..-.+++.+++..+..+...|+..-..|...+..
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 56 VGFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788898887754433211111 1123455666666666666666666666655543
No 98
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.10 E-value=1.9e+02 Score=21.40 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (227)
Q Consensus 135 ~~Vr~rK~q~l~~eI~~L~~ke~~l~eeN~~L~~~~ 170 (227)
.-+|+-|-.+++.+++.|-++...|-..-..|++|.
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888887776666666666554
No 99
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.98 E-value=7.9 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.6
Q ss_pred hhhhHhhhhccCCceEEEEecCCCCccccCCCchhHHHhhhhccc
Q 027190 29 FKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 73 (227)
Q Consensus 29 ~KKA~ELsvLCdaevalivfs~~gkl~~~~s~sm~~ileRY~~~s 73 (227)
+|+|+|.+.+++=|.|++.|. ++-+-|+||....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 689999999999999887664 4677888887543
No 100
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=21.47 E-value=75 Score=22.15 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.9
Q ss_pred hHhhhhccCCce--EEEEecCCCCccccCC---CchhHHHhhhhcccc
Q 027190 32 AEELSVLCDAEV--GVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (227)
Q Consensus 32 A~ELsvLCdaev--alivfs~~gkl~~~~s---~sm~~ileRY~~~s~ 74 (227)
.+=|||.++..| ..|...++|+.|.... +++.++|+-|...+.
T Consensus 40 ~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 87 (112)
T 3k2m_A 40 QRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 87 (112)
T ss_dssp CEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHHHHHCCT
T ss_pred CEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHHHhhCCC
Confidence 346888888777 4444557787664333 589999999987644
No 101
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.23 E-value=1.7e+02 Score=23.42 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027190 145 IMNEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 145 l~~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
|.++|+.++.....|.++|..|+.
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544
No 102
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.97 E-value=2.1e+02 Score=19.74 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHH-----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027190 116 HGLTIEELQHLETMLEQGLSRV-----LQTKGD---RIMNEISTLERKGAKLLEENKNLKQKVAS 172 (227)
Q Consensus 116 ~~Lsl~EL~~LE~~Le~~L~~V-----r~rK~q---~l~~eI~~L~~ke~~l~eeN~~L~~~~~~ 172 (227)
.|||-+++..|-+.=-+.-++. |.+|.+ .|..+...|+.....|..||..+...+..
T Consensus 16 ~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 16 RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887755433332222 334432 33456666666666677777776666544
No 103
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.28 E-value=3.1e+02 Score=23.41 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027190 147 NEISTLERKGAKLLEENKNLKQ 168 (227)
Q Consensus 147 ~eI~~L~~ke~~l~eeN~~L~~ 168 (227)
..+..++.+...|.+.-..|..
T Consensus 33 ~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 33 EMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333
No 104
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.26 E-value=1.5e+02 Score=18.36 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027190 115 LHGLTIEELQHLETMLEQ 132 (227)
Q Consensus 115 L~~Lsl~EL~~LE~~Le~ 132 (227)
|..||++||++--..|+.
T Consensus 7 Lk~ls~eEL~~rl~~Ld~ 24 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDP 24 (51)
T ss_dssp GGGSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccH
Confidence 456789998876544444
No 105
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.13 E-value=60 Score=21.73 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEecCCCCccccCC-CchhHHHhh
Q 027190 44 GVIIFSATGKLFESSS-SSMKDIIAR 68 (227)
Q Consensus 44 alivfs~~gkl~~~~s-~sm~~ileR 68 (227)
-+.||.|.|..++++. +++.++...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3788999999999987 456666543
Done!