Query 027192
Match_columns 226
No_of_seqs 132 out of 211
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4774 Uncharacterized conser 100.0 5.7E-28 1.2E-32 205.5 13.6 169 42-211 14-188 (190)
2 KOG4595 Uncharacterized conser 99.5 9.4E-14 2E-18 114.9 7.8 123 62-214 12-135 (139)
3 PF09811 Yae1_N: Essential pro 99.3 1.2E-12 2.5E-17 86.9 3.8 39 74-112 1-39 (39)
4 PRK13386 fliH flagellar assemb 97.9 0.00025 5.4E-09 62.9 11.9 45 72-116 45-89 (236)
5 PRK05687 fliH flagellar assemb 97.7 0.00054 1.2E-08 60.2 11.8 48 59-110 57-104 (246)
6 KOG4595 Uncharacterized conser 97.3 0.00044 9.6E-09 57.9 5.3 54 60-114 7-60 (139)
7 PRK05687 fliH flagellar assemb 96.9 0.0055 1.2E-07 53.9 9.0 27 72-98 74-100 (246)
8 PRK13386 fliH flagellar assemb 96.8 0.012 2.6E-07 52.3 10.0 30 187-216 144-174 (236)
9 PF09811 Yae1_N: Essential pro 96.0 0.012 2.5E-07 39.0 4.0 34 73-106 4-37 (39)
10 COG1317 FliH Flagellar biosynt 96.0 0.052 1.1E-06 48.4 9.3 39 69-107 54-92 (234)
11 TIGR03825 FliH_bacil flagellar 93.7 0.48 1.1E-05 42.2 8.9 26 190-215 161-186 (255)
12 COG1317 FliH Flagellar biosynt 90.4 2.6 5.6E-05 37.7 9.5 40 63-102 52-91 (234)
13 PRK06669 fliH flagellar assemb 87.5 9.7 0.00021 34.2 11.2 24 186-209 216-239 (281)
14 KOG4774 Uncharacterized conser 84.1 3 6.5E-05 36.7 6.0 68 49-116 24-91 (190)
15 PRK06669 fliH flagellar assemb 83.8 21 0.00045 32.1 11.4 29 188-216 189-217 (281)
16 PRK09956 hypothetical protein; 67.7 5.9 0.00013 36.6 3.5 24 67-90 247-270 (308)
17 PRK06328 type III secretion sy 50.6 1.6E+02 0.0035 26.1 9.4 17 186-202 142-158 (223)
18 PRK06032 fliH flagellar assemb 47.0 1.9E+02 0.0041 24.9 11.2 25 190-214 113-137 (199)
19 PRK06937 type III secretion sy 44.5 1.2E+02 0.0026 26.1 7.4 11 88-98 59-69 (204)
20 PF12644 DUF3782: Protein of u 42.9 46 0.00099 23.3 3.9 38 58-101 24-61 (64)
21 PF12732 YtxH: YtxH-like prote 41.5 1E+02 0.0022 22.3 5.7 18 97-114 3-20 (74)
22 TIGR02499 HrpE_YscL_not type I 40.8 1.4E+02 0.0031 23.9 7.1 87 84-216 38-125 (166)
23 TIGR03825 FliH_bacil flagellar 39.3 60 0.0013 28.9 5.0 22 186-207 186-207 (255)
24 PRK06937 type III secretion sy 30.7 57 0.0012 28.0 3.3 23 77-99 52-74 (204)
25 PRK06328 type III secretion sy 30.3 54 0.0012 29.0 3.1 21 185-205 188-208 (223)
26 TIGR02301 conserved hypothetic 28.3 51 0.0011 27.3 2.4 35 60-97 53-87 (121)
27 PF09539 DUF2385: Protein of u 24.5 61 0.0013 25.8 2.2 34 61-97 29-62 (96)
28 PRK09956 hypothetical protein; 22.5 89 0.0019 28.9 3.2 40 75-114 239-278 (308)
29 PF05377 FlaC_arch: Flagella a 22.2 2.7E+02 0.0059 20.1 5.0 43 102-144 6-48 (55)
30 PF06295 DUF1043: Protein of u 21.7 3.4E+02 0.0074 21.9 6.1 16 101-116 4-19 (128)
31 PF04210 MtrG: Tetrahydrometha 21.5 1E+02 0.0022 23.4 2.8 48 60-116 11-58 (70)
32 KOG1464 COP9 signalosome, subu 20.4 5E+02 0.011 25.3 7.7 65 96-163 69-135 (440)
33 TIGR01149 mtrG N5-methyltetrah 20.4 1.2E+02 0.0026 23.0 2.9 48 60-116 11-58 (70)
34 PF10247 Romo1: Reactive mitoc 20.1 99 0.0021 23.1 2.4 27 91-117 7-33 (67)
No 1
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=5.7e-28 Score=205.53 Aligned_cols=169 Identities=25% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcC-ch
Q 027192 42 DGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCL-PN 120 (226)
Q Consensus 42 dDDvwgddDee~~~~~~~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~~l-~~ 120 (226)
+|+.| .+|++.+...+..+||++++++|.+.||||||.+||++.+|+|||+||++|+.+|+++|.++|+++|+.++ ++
T Consensus 14 ~d~~d-~SDeEsd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~d 92 (190)
T KOG4774|consen 14 GDKGD-VSDEESDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFHD 92 (190)
T ss_pred Ccccc-ccCchhHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45555 44444555556799999999999999999999999999999999999999999999999999999999985 44
Q ss_pred HHH---HHhHHHHHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhhhhhhcccCCC--CCCcccccccCCCcchhhhhhHH
Q 027192 121 ELK---EMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAE--GGSNVTGLQNQSSDRSRLENHFG 195 (226)
Q Consensus 121 ~lk---~~l~~~~~kr~~L~~L~~sI~sls~~d~L~~fh~~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~ 195 (226)
+++ +.++.+|+-+...+.|+.+|..+++...++-|++.|..+...+.....+ +-+.-.+...+..-+-.+.++..
T Consensus 93 Ene~~~k~~IlkQe~~r~~e~l~khif~~n~~~h~~e~l~~It~k~~~~~~~~Ek~~~~s~d~~s~sgi~~s~~~~~~~~ 172 (190)
T KOG4774|consen 93 ENENINKINILKQEVGRCEEYLLKHIFSINPPSHVVELLDSITDKDLCHVVPAEKKIDESKDEKSHSGIDCSYVECCRTQ 172 (190)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhcccccccccCCccccccCCCCCcceeeehhhhhH
Confidence 666 8899999999999999999999999999999999999988665543333 32222244444444557899999
Q ss_pred HHHHHhhhCCcccccc
Q 027192 196 ELESIILETPAIQVHL 211 (226)
Q Consensus 196 ~l~slL~~~p~i~~~~ 211 (226)
++.++++.||.+-+..
T Consensus 173 e~~~~~~~spt~~~~~ 188 (190)
T KOG4774|consen 173 EHAHSENPSPTWILEQ 188 (190)
T ss_pred HHhhccCCCCceEeec
Confidence 9999999999987754
No 2
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.4e-14 Score=114.90 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=101.5
Q ss_pred HHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHhHHH-HHHHHHHHHHH
Q 027192 62 EWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIET-QEKRNKFQSLY 140 (226)
Q Consensus 62 Ew~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~~l~~~lk~~l~~~-~~kr~~L~~L~ 140 (226)
+.-++++++++.||+||+.+|.+++.-+||..|+.+||.+|..+|+|+|...+|.++ ++.+-..+ .+.++.|.+++
T Consensus 12 ~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~---lhs~~~~ks~~~lr~L~~~l 88 (139)
T KOG4595|consen 12 DIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQL---LHSPKTRKSLRQLRSLISLL 88 (139)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh---ccCCchhcCHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999999987 33333333 46688888999
Q ss_pred HHhhcCChHHHhhhhhhhhhhhhhhhcccCCCCCCcccccccCCCcchhhhhhHHHHHHHhhhCCccccccchh
Q 027192 141 ESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQ 214 (226)
Q Consensus 141 ~sI~sls~~d~L~~fh~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~~p~i~~~~~~~ 214 (226)
.+++.+|..++. . + .+ .....++|.+++++++||..-|+.+++++.-
T Consensus 89 ~~l~~~~~~~~~---------------d----~-----~~---~~~~nkir~~~~~~~~l~~~k~~~t~s~e~~ 135 (139)
T KOG4595|consen 89 PMLNDPPALDET---------------D----V-----QL---IRSKNKIRRKLKGSKSLLGAKPAPTNSVEHK 135 (139)
T ss_pred hccCCCcccchH---------------H----H-----HH---HHHHHHHHHHHHHHHhcccCccCcccccccc
Confidence 999999888887 1 1 01 1145799999999999999999988877643
No 3
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=99.33 E-value=1.2e-12 Score=86.91 Aligned_cols=39 Identities=46% Similarity=0.963 Sum_probs=37.9
Q ss_pred chHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHH
Q 027192 74 GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVT 112 (226)
Q Consensus 74 GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~l 112 (226)
||+||+.+|+++++|+|||.||++|+.+|+++|+++|++
T Consensus 1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~ 39 (39)
T PF09811_consen 1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA 39 (39)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999974
No 4
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=97.85 E-value=0.00025 Score=62.94 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=26.6
Q ss_pred hcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192 72 TIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116 (226)
Q Consensus 72 k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~ 116 (226)
..||.+|+..|-+.++++||..|+.+|..-|+.-|.-.|...+..
T Consensus 45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~ 89 (236)
T PRK13386 45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQ 89 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666665555433
No 5
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=97.72 E-value=0.00054 Score=60.24 Aligned_cols=48 Identities=31% Similarity=0.619 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 027192 59 LDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRG 110 (226)
Q Consensus 59 ~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G 110 (226)
...++..+++.-...||.+|+.+| .++||..||.+|+.-|+.-|.-.|
T Consensus 57 ~~~~~e~~~~~a~~eG~~~G~~~G----~~~G~~~G~~~G~~~G~~qg~~e~ 104 (246)
T PRK05687 57 TEEELEAIRQQAHEEGFAAGKAEG----RAEGYEAGYQEGLAQGLEQGLAEG 104 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444555544444 555555555555555555544433
No 6
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00044 Score=57.85 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 027192 60 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA 114 (226)
Q Consensus 60 ~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsa 114 (226)
+-+|.-+-. ....=|++|+.+|.+.++.+||-+||..|...|++.|.+.|.+.+
T Consensus 7 ~d~fD~Iv~-lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G 60 (139)
T KOG4595|consen 7 NDDFDDIVL-LEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG 60 (139)
T ss_pred HhHHHHHHH-HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334554443 333448888888888888888888888888888888888888877
No 7
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=96.94 E-value=0.0055 Score=53.89 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=11.0
Q ss_pred hcchHHHHHhhhhhhhhhhhhhcHHHH
Q 027192 72 TIGYRDGLLAGKETSAQEGFNMGFKES 98 (226)
Q Consensus 72 k~GYrDGi~~GKE~~lQeGFD~Gf~~G 98 (226)
..||.+|+..|.+.+.|+||..||.+|
T Consensus 74 ~~G~~~G~~~G~~~G~~~G~~~G~~qg 100 (246)
T PRK05687 74 AAGKAEGRAEGYEAGYQEGLAQGLEQG 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 8
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=96.78 E-value=0.012 Score=52.29 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=16.1
Q ss_pred chhhhhhHHHHHHHhhh-CCccccccchhhH
Q 027192 187 RSRLENHFGELESIILE-TPAIQVHLEVQKY 216 (226)
Q Consensus 187 ~~~l~~~~~~l~slL~~-~p~i~~~~~~~~~ 216 (226)
.+.|-+.+++....|.. ...|.|+++..-|
T Consensus 144 p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~ 174 (236)
T PRK13386 144 PQQILALVEETLAALPDDPEQLKVHLNPEEF 174 (236)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEECHHHH
Confidence 34455556666666654 3455555555443
No 9
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=96.02 E-value=0.012 Score=39.00 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=18.0
Q ss_pred cchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHH
Q 027192 73 IGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWG 106 (226)
Q Consensus 73 ~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG 106 (226)
.|+.+|..+|-.++.+.||..||..|+.+|+..|
T Consensus 4 eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G 37 (39)
T PF09811_consen 4 EGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKG 37 (39)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555555555555444
No 10
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.052 Score=48.40 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=30.9
Q ss_pred HhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHH
Q 027192 69 QFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGL 107 (226)
Q Consensus 69 ~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~ 107 (226)
.-+..+++++|..|.+.++++||..||.+|+.-|..-|+
T Consensus 54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~ 92 (234)
T COG1317 54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR 92 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888888888888888877776
No 11
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=93.66 E-value=0.48 Score=42.19 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhhCCccccccchhh
Q 027192 190 LENHFGELESIILETPAIQVHLEVQK 215 (226)
Q Consensus 190 l~~~~~~l~slL~~~p~i~~~~~~~~ 215 (226)
+.+.+++....+..++.|.|+++..-
T Consensus 161 i~~lv~~al~~l~~~~~i~I~v~p~d 186 (255)
T TIGR03825 161 FQALVRQVLSEVREFDEVSIYVHPHW 186 (255)
T ss_pred HHHHHHHHHHhccCCCcEEEEECHHH
Confidence 34444555555555555555555443
No 12
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.41 E-value=2.6 Score=37.69 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHH
Q 027192 63 WQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSG 102 (226)
Q Consensus 63 w~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG 102 (226)
+.--..+=..++|..|-.+|.+.+.|.||.+||.+|..-|
T Consensus 52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~ 91 (234)
T COG1317 52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566667777777777777777777777776555
No 13
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=87.55 E-value=9.7 Score=34.24 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=12.0
Q ss_pred cchhhhhhHHHHHHHhhhCCcccc
Q 027192 186 DRSRLENHFGELESIILETPAIQV 209 (226)
Q Consensus 186 ~~~~l~~~~~~l~slL~~~p~i~~ 209 (226)
+...++....++.+++...+.+.|
T Consensus 216 d~~~l~~~~~~l~~~l~~~~~i~I 239 (281)
T PRK06669 216 DYEYVKEQKDELISLLDNEEHLKI 239 (281)
T ss_pred HHHHHHHhHHHHHHhcCCCCCeEE
Confidence 444555555555555554444443
No 14
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=3 Score=36.66 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192 49 SNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116 (226)
Q Consensus 49 dDee~~~~~~~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~ 116 (226)
+|.....++.+.+-.++.-.+=...|..-|-++--.+++-.||-.|-+.|+++|.-.|.+.+.++-+-
T Consensus 24 sd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~ 91 (190)
T KOG4774|consen 24 SDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFH 91 (190)
T ss_pred hHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44455555556666666666777888888888888888999999999999999999999999988776
No 15
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=83.78 E-value=21 Score=32.15 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=21.3
Q ss_pred hhhhhhHHHHHHHhhhCCccccccchhhH
Q 027192 188 SRLENHFGELESIILETPAIQVHLEVQKY 216 (226)
Q Consensus 188 ~~l~~~~~~l~slL~~~p~i~~~~~~~~~ 216 (226)
.-+....+++...|...+.+.++++..-|
T Consensus 189 ~~i~~li~~al~~l~~~~~i~I~V~p~d~ 217 (281)
T PRK06669 189 EIALALVKELLKEVKDATDITIRVNPEDY 217 (281)
T ss_pred HHHHHHHHHHHHHcCcCCcEEEEECHHHH
Confidence 34667777887888888888888865555
No 16
>PRK09956 hypothetical protein; Provisional
Probab=67.72 E-value=5.9 Score=36.59 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=11.7
Q ss_pred HHHhhhcchHHHHHhhhhhhhhhh
Q 027192 67 RDQFHTIGYRDGLLAGKETSAQEG 90 (226)
Q Consensus 67 ~e~~~k~GYrDGi~~GKE~~lQeG 90 (226)
.++....|...|+..|++.++|+|
T Consensus 247 Ae~l~qeG~e~G~q~G~~eG~qeG 270 (308)
T PRK09956 247 AERLRQEGHQIGWQEGKLEGLQEG 270 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555553333333
No 17
>PRK06328 type III secretion system protein; Validated
Probab=50.58 E-value=1.6e+02 Score=26.06 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=7.8
Q ss_pred cchhhhhhHHHHHHHhh
Q 027192 186 DRSRLENHFGELESIIL 202 (226)
Q Consensus 186 ~~~~l~~~~~~l~slL~ 202 (226)
|...|+....++..++.
T Consensus 142 D~~~v~~~~~~l~~~~~ 158 (223)
T PRK06328 142 DLAIVEKSRPELKKIVE 158 (223)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44445554444444433
No 18
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=46.98 E-value=1.9e+02 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHhhhCCccccccchh
Q 027192 190 LENHFGELESIILETPAIQVHLEVQ 214 (226)
Q Consensus 190 l~~~~~~l~slL~~~p~i~~~~~~~ 214 (226)
+.+.+++....+...|.+.|+++..
T Consensus 113 v~~~v~eal~~l~~~~~v~I~v~P~ 137 (199)
T PRK06032 113 ITAAVRDCLRHLVATPHLVVRVNDA 137 (199)
T ss_pred HHHHHHHHHHHhcCCCcEEEEECHH
Confidence 4444455555555555555544443
No 19
>PRK06937 type III secretion system protein; Reviewed
Probab=44.50 E-value=1.2e+02 Score=26.07 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=4.3
Q ss_pred hhhhhhcHHHH
Q 027192 88 QEGFNMGFKES 98 (226)
Q Consensus 88 QeGFD~Gf~~G 98 (226)
++||..|+.+|
T Consensus 59 ~~Gy~~G~~~a 69 (204)
T PRK06937 59 QLGYQAGLDEA 69 (204)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 20
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=42.92 E-value=46 Score=23.29 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHH
Q 027192 58 DLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHS 101 (226)
Q Consensus 58 ~~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~l 101 (226)
....+++++.+.+...|+|-|+.. +..|-.||+.|+.+
T Consensus 24 lt~e~~~~l~~~~~al~~~~~~~~------e~afr~G~~d~l~~ 61 (64)
T PF12644_consen 24 LTKEDKKRLEEYIDALGARWGLES------EEAFRQGFRDGLRL 61 (64)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHH
Confidence 345677778888888888888764 56677777766654
No 21
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=41.49 E-value=1e+02 Score=22.32 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027192 97 ESFHSGYNWGLVRGVTSA 114 (226)
Q Consensus 97 ~Ga~lG~~lG~l~G~lsa 114 (226)
.|+-+|.-+|-..|++.+
T Consensus 3 ~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344444444444444444
No 22
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=40.78 E-value=1.4e+02 Score=23.92 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHhHHH-HHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhh
Q 027192 84 ETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIET-QEKRNKFQSLYESVHSLSTTDALKLFHDDILTK 162 (226)
Q Consensus 84 E~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~~l~~~lk~~l~~~-~~kr~~L~~L~~sI~sls~~d~L~~fh~~i~~~ 162 (226)
+...++||..||.+|. .+....+... ......+..+...|-.+-..-+-|++...
T Consensus 38 e~~~~~g~~~G~~~g~--------------------~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil~~~---- 93 (166)
T TIGR02499 38 EASRQLGYEQGLEQFW--------------------QEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQILGEY---- 93 (166)
T ss_pred HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Q ss_pred hhhhcccCCCCCCcccccccCCCcchhhhhhHHHHHHHhhhCCccccccchhhH
Q 027192 163 KAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKY 216 (226)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~~p~i~~~~~~~~~ 216 (226)
. +...+...++++...+...+.+.|+++..-+
T Consensus 94 ~----------------------~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~ 125 (166)
T TIGR02499 94 D----------------------EPERLVRLLRQLLRAVANQGRLTLRVHPEQL 125 (166)
T ss_pred C----------------------CHHHHHHHHHHHHHhCCCCCceEEEECHHHH
No 23
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=39.29 E-value=60 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=11.8
Q ss_pred cchhhhhhHHHHHHHhhhCCcc
Q 027192 186 DRSRLENHFGELESIILETPAI 207 (226)
Q Consensus 186 ~~~~l~~~~~~l~slL~~~p~i 207 (226)
+...++.....|...+.....+
T Consensus 186 d~~~v~~~~~~l~~~~~~~~~i 207 (255)
T TIGR03825 186 WYERVAAQKDELQSILPACEHL 207 (255)
T ss_pred HHHHHHHhHHHHHhhcCCCCce
Confidence 4555666666666655444333
No 24
>PRK06937 type III secretion system protein; Reviewed
Probab=30.69 E-value=57 Score=28.04 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=10.2
Q ss_pred HHHHhhhhhhhhhhhhhcHHHHH
Q 027192 77 DGLLAGKETSAQEGFNMGFKESF 99 (226)
Q Consensus 77 DGi~~GKE~~lQeGFD~Gf~~Ga 99 (226)
+++..+++.+.++|+..|..+.+
T Consensus 52 ~~~e~~~~~Gy~~G~~~a~~e~~ 74 (204)
T PRK06937 52 EVYEQQKQLGYQAGLDEARTEQA 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 25
>PRK06328 type III secretion system protein; Validated
Probab=30.32 E-value=54 Score=29.04 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=16.3
Q ss_pred CcchhhhhhHHHHHHHhhhCC
Q 027192 185 SDRSRLENHFGELESIILETP 205 (226)
Q Consensus 185 ~~~~~l~~~~~~l~slL~~~p 205 (226)
+-..+|...-+.|..+|+..+
T Consensus 188 sle~ql~~l~~al~~~l~~~~ 208 (223)
T PRK06328 188 QLDVQLAALEKAFSTILKHKN 208 (223)
T ss_pred cHHHHHHHHHHHHHHHHcccC
Confidence 445688888888889998864
No 26
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=28.28 E-value=51 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHH
Q 027192 60 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKE 97 (226)
Q Consensus 60 ~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~ 97 (226)
...|+..+..+...= +-.......+-++||.||+.
T Consensus 53 ~~~WR~~M~~Ll~aE---~p~~~rR~rl~~aFNrGYr~ 87 (121)
T TIGR02301 53 DDYWRSRMQALIDAE---TADEERRARMTAAFNRGYRS 87 (121)
T ss_pred chHHHHHHHHHHHhh---CCChhHHHHHHHHHHHHHHH
Confidence 367888888877643 44456678889999999975
No 27
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=24.51 E-value=61 Score=25.80 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHH
Q 027192 61 REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKE 97 (226)
Q Consensus 61 rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~ 97 (226)
..|+..+..+... |.-.......|-+.||.||+.
T Consensus 29 ~~WR~~M~~Ll~~---E~p~~~rR~rl~~aFN~GYr~ 62 (96)
T PF09539_consen 29 QYWRDRMQALLDA---EAPDEARRARLIAAFNRGYRA 62 (96)
T ss_pred chHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 4577666666654 334446777899999999975
No 28
>PRK09956 hypothetical protein; Provisional
Probab=22.49 E-value=89 Score=28.93 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=21.8
Q ss_pred hHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 027192 75 YRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA 114 (226)
Q Consensus 75 YrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsa 114 (226)
+++-+----+.-.|+|+-.|-.+|-.-|.+-|...|.+..
T Consensus 239 ~~e~iMTiAe~l~qeG~e~G~q~G~~eG~qeG~~e~~~ei 278 (308)
T PRK09956 239 QKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKI 278 (308)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544445556666666666665555555555554443
No 29
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.15 E-value=2.7e+02 Score=20.12 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHhh
Q 027192 102 GYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVH 144 (226)
Q Consensus 102 G~~lG~l~G~lsal~~l~~~lk~~l~~~~~kr~~L~~L~~sI~ 144 (226)
=-++|.+.+.+.++..=..++++.+....+..++|-+||+.|.
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888877777666777777777777888889998775
No 30
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.72 E-value=3.4e+02 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 027192 101 SGYNWGLVRGVTSALV 116 (226)
Q Consensus 101 lG~~lG~l~G~lsal~ 116 (226)
+|+-+|.+.|++.+..
T Consensus 4 i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554433
No 31
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.54 E-value=1e+02 Score=23.42 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192 60 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116 (226)
Q Consensus 60 ~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~ 116 (226)
..|++++++++ |.|++--|-..-+=|. +.|=++|..+|-++|++.++.
T Consensus 11 ~~~~~~i~~rL------d~iEeKvEf~~~Ei~Q---r~GkkiGRDiGIlYG~v~Gli 58 (70)
T PF04210_consen 11 PDDFNEIMKRL------DEIEEKVEFTNAEIAQ---RAGKKIGRDIGILYGLVIGLI 58 (70)
T ss_pred HHHHHHHHHHH------HHHHHHHHhHHHHHHH---HHhHHhhhHHHHHHHHHHHHH
Confidence 56677777764 4444444433222221 346666666666666666554
No 32
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.44 E-value=5e+02 Score=25.28 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHHhHHH--HHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhhh
Q 027192 96 KESFHSGYNWGLVRGVTSALVCLPNELKEMLIET--QEKRNKFQSLYESVHSLSTTDALKLFHDDILTKK 163 (226)
Q Consensus 96 ~~Ga~lG~~lG~l~G~lsal~~l~~~lk~~l~~~--~~kr~~L~~L~~sI~sls~~d~L~~fh~~i~~~~ 163 (226)
++-.++-|++|.+.-.+.....|..=.|+.+.-. .++.+.+-+. |...-..+-||-|++.++.--
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy---iStS~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY---ISTSKNMDLLQEFYETTLDAL 135 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHH
Confidence 4567788888888888777665422223322111 1223433333 335555677788887776544
No 33
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.41 E-value=1.2e+02 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192 60 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116 (226)
Q Consensus 60 ~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~ 116 (226)
..|++++++++ |.+++--|-..-+=|. +.|=++|..+|-++|++.++.
T Consensus 11 ~~d~~~i~~rL------d~iEeKVEf~~~E~~Q---r~Gkk~GRDiGIlYG~viGll 58 (70)
T TIGR01149 11 PDEFNEVMKRL------DEIEEKVEFVNGEVAQ---RIGKKVGRDIGILYGLVIGLI 58 (70)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHhHHhhhHHHHHHHHHHHHH
Confidence 46777777774 5566555555444332 346666666666666666553
No 34
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=20.08 E-value=99 Score=23.13 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 027192 91 FNMGFKESFHSGYNWGLVRGVTSALVC 117 (226)
Q Consensus 91 FD~Gf~~Ga~lG~~lG~l~G~lsal~~ 117 (226)
+-.|+.-|+.+|..+|.+.|..+++++
T Consensus 7 ikmG~~MG~~VG~~~G~l~G~~~~~r~ 33 (67)
T PF10247_consen 7 IKMGFMMGGAVGGAFGALFGTFSAFRY 33 (67)
T ss_pred HHHHHHHhhHHHhhhhhhhhhHHHhcc
Confidence 346788888899999999999999887
Done!