Query 027192
Match_columns 226
No_of_seqs 132 out of 211
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_M SurviVal motor neuron p 14.8 40 0.0014 21.7 0.3 11 39-49 2-12 (37)
2 3v22_V Ribosome modulation fac 8.7 1.1E+02 0.0038 21.6 0.9 17 83-99 5-21 (61)
3 3t5v_C 26S proteasome complex 8.4 2E+02 0.0067 21.7 2.3 25 44-68 62-86 (89)
4 1sgv_A TRNA pseudouridine synt 8.4 70 0.0024 28.9 -0.3 21 206-226 168-188 (316)
5 1q08_A Zn(II)-responsive regul 7.7 2.6E+02 0.0091 19.4 2.7 16 100-115 14-29 (99)
6 3axj_A GM27569P, translin; tra 7.5 3.2E+02 0.011 23.3 3.6 18 208-225 147-164 (249)
7 2cqn_A Formin-binding protein 7.3 4.5E+02 0.015 18.6 3.7 27 186-212 4-31 (77)
8 1r3e_A TRNA pseudouridine synt 7.1 86 0.0029 28.2 -0.3 21 206-226 160-180 (309)
9 4afl_A P29ING4, inhibitor of g 7.0 3.8E+02 0.013 19.4 3.3 37 108-144 6-42 (104)
10 2jrm_A Ribosome modulation fac 6.9 2.2E+02 0.0074 20.3 1.8 17 83-99 5-21 (65)
No 1
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=14.83 E-value=40 Score=21.71 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q 027192 39 DGDDGSVWGGS 49 (226)
Q Consensus 39 ~~ddDDvwgdd 49 (226)
+++|.|+|++.
T Consensus 2 qsddSDiWDdt 12 (37)
T 3s6n_M 2 QSDDSDIWDDT 12 (37)
T ss_pred CccchhhhhhH
Confidence 45678999653
No 2
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=8.68 E-value=1.1e+02 Score=21.58 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhcHHHHH
Q 027192 83 KETSAQEGFNMGFKESF 99 (226)
Q Consensus 83 KE~~lQeGFD~Gf~~Ga 99 (226)
|...++..|..||..|+
T Consensus 5 KRD~leRA~~rGYqAGl 21 (61)
T 3v22_V 5 KRDRLERAHQRGYQAGI 21 (61)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhhc
Confidence 44566777777776664
No 3
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=8.43 E-value=2e+02 Score=21.73 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=11.4
Q ss_pred CCCCCCCCccccchhhHHHHHHHHH
Q 027192 44 SVWGGSNEEFDIETDLDREWQRRRD 68 (226)
Q Consensus 44 DvwgddDee~~~~~~~~rEw~rl~e 68 (226)
|-|++++.+.+.+.-+..|+.+...
T Consensus 62 ddWDDDdv~DDFS~QLr~EL~k~~~ 86 (89)
T 3t5v_C 62 ENWDDVEVDDDFTNELKAELDRYKR 86 (89)
T ss_dssp TTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHhHh
Confidence 3354444444444444455544443
No 4
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=8.38 E-value=70 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=17.8
Q ss_pred ccccccchhhHHHHhhhhcCC
Q 027192 206 AIQVHLEVQKYLVSLCNDIGK 226 (226)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~ 226 (226)
.|+|+.+..-|+-|||.|||.
T Consensus 168 ~~~v~CskGTYIRsLa~DiG~ 188 (316)
T 1sgv_A 168 DVEIDCSSGTYIRALARDLGD 188 (316)
T ss_dssp EEEEEESCCTTHHHHHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHH
Confidence 355888889999999999983
No 5
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=7.74 E-value=2.6e+02 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 027192 100 HSGYNWGLVRGVTSAL 115 (226)
Q Consensus 100 ~lG~~lG~l~G~lsal 115 (226)
.+||.+-.|+-++...
T Consensus 14 ~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 14 QLGFSLESIRELLSIR 29 (99)
T ss_dssp HTTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH
Confidence 3566677777777543
No 6
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=7.54 E-value=3.2e+02 Score=23.34 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=13.4
Q ss_pred ccccchhhHHHHhhhhcC
Q 027192 208 QVHLEVQKYLVSLCNDIG 225 (226)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ 225 (226)
.+|++.+-||..||.=+|
T Consensus 147 ~f~v~~edYLlGL~DLtG 164 (249)
T 3axj_A 147 GFHLDVEDYLLGILQLAS 164 (249)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHh
Confidence 467888888888886544
No 7
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=7.32 E-value=4.5e+02 Score=18.57 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=20.7
Q ss_pred cchhhhhhHHHHHHHhhhC-Cccccccc
Q 027192 186 DRSRLENHFGELESIILET-PAIQVHLE 212 (226)
Q Consensus 186 ~~~~l~~~~~~l~slL~~~-p~i~~~~~ 212 (226)
...|++..-.++..||... |.|+..-.
T Consensus 4 ~~~r~rrl~~~F~~mLk~~~p~I~~~s~ 31 (77)
T 2cqn_A 4 GSSGMKRKESAFKSMLKQAAPPIELDAV 31 (77)
T ss_dssp CCCSHHHHHHHHHHHHHTCSSCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4467788888899999998 88876543
No 8
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=7.10 E-value=86 Score=28.22 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=17.6
Q ss_pred ccccccchhhHHHHhhhhcCC
Q 027192 206 AIQVHLEVQKYLVSLCNDIGK 226 (226)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~ 226 (226)
.|+|+.+..-|+-+||.|||.
T Consensus 160 ~~~v~CskGTYIRsL~~DiG~ 180 (309)
T 1r3e_A 160 SFRVEVSPGTYIRSLCMDIGY 180 (309)
T ss_dssp EEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEECCCchHHHHHHHHHH
Confidence 345888889999999999983
No 9
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=6.98 E-value=3.8e+02 Score=19.37 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHhh
Q 027192 108 VRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVH 144 (226)
Q Consensus 108 l~G~lsal~~l~~~lk~~l~~~~~kr~~L~~L~~sI~ 144 (226)
+--++..+..||.+++..+...++.-.+.+.+...|.
T Consensus 6 ledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~ 42 (104)
T 4afl_A 6 LEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEID 42 (104)
T ss_dssp HHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999999998888777777766666543
No 10
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=6.86 E-value=2.2e+02 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhcHHHHH
Q 027192 83 KETSAQEGFNMGFKESF 99 (226)
Q Consensus 83 KE~~lQeGFD~Gf~~Ga 99 (226)
|...++..|..||..|.
T Consensus 5 KRD~leRA~~rGYqAGl 21 (65)
T 2jrm_A 5 KRDRLERAQSQGYKAGL 21 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 44556666777776664
Done!