Query 027194
Match_columns 226
No_of_seqs 179 out of 2015
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.5E-33 2.1E-37 219.6 22.8 159 4-181 105-270 (346)
2 TIGR01645 half-pint poly-U bin 100.0 2.3E-30 4.9E-35 216.4 20.9 171 4-186 105-282 (612)
3 KOG0105 Alternative splicing f 100.0 1.5E-29 3.2E-34 176.5 20.2 193 1-198 1-202 (241)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.5E-30 1.4E-34 207.1 20.8 153 5-176 2-161 (352)
5 KOG0148 Apoptosis-promoting RN 100.0 1.8E-30 3.8E-35 191.1 14.5 169 6-179 62-233 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-29 2.7E-34 212.0 21.2 166 4-177 87-259 (457)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.9E-29 1.3E-33 201.5 23.7 177 5-185 88-346 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-29 8.8E-34 209.0 22.6 170 5-186 1-172 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-28 4.5E-33 204.7 22.4 182 4-187 273-479 (481)
10 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-28 5.5E-33 208.6 19.9 152 8-176 2-159 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 8.6E-28 1.9E-32 200.7 21.3 175 6-188 58-307 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-27 5.2E-32 200.8 21.3 170 3-176 172-367 (509)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.9E-27 8.5E-32 199.5 21.5 174 4-177 293-495 (509)
14 KOG0117 Heterogeneous nuclear 100.0 4.3E-27 9.2E-32 184.2 17.3 174 6-187 83-330 (506)
15 TIGR01628 PABP-1234 polyadenyl 100.0 4.2E-27 9.1E-32 201.2 18.1 174 5-179 177-359 (562)
16 KOG0109 RNA-binding protein LA 100.0 1.4E-27 2.9E-32 177.6 11.5 148 7-184 3-150 (346)
17 KOG0131 Splicing factor 3b, su 99.9 6.9E-27 1.5E-31 162.8 13.6 166 4-187 7-180 (203)
18 TIGR01622 SF-CC1 splicing fact 99.9 2.5E-25 5.5E-30 186.1 22.1 174 5-178 185-442 (457)
19 KOG0144 RNA-binding protein CU 99.9 1.5E-26 3.3E-31 180.4 12.5 155 5-177 33-197 (510)
20 KOG0145 RNA-binding protein EL 99.9 4.4E-26 9.4E-31 167.3 13.9 161 4-185 39-206 (360)
21 KOG0145 RNA-binding protein EL 99.9 8.9E-25 1.9E-29 160.5 16.4 176 6-181 127-355 (360)
22 KOG0127 Nucleolar protein fibr 99.9 5.5E-25 1.2E-29 176.3 16.4 177 6-186 5-194 (678)
23 KOG0127 Nucleolar protein fibr 99.9 7.1E-24 1.5E-28 170.0 19.3 175 4-178 115-372 (678)
24 KOG0106 Alternative splicing f 99.9 1.8E-24 4E-29 157.9 10.7 170 7-185 2-172 (216)
25 KOG0123 Polyadenylate-binding 99.9 6.2E-23 1.4E-27 164.4 16.6 142 7-176 2-145 (369)
26 KOG0124 Polypyrimidine tract-b 99.9 7.2E-24 1.6E-28 162.6 8.5 163 6-176 113-282 (544)
27 KOG0110 RNA-binding protein (R 99.9 1.9E-22 4.1E-27 166.3 13.2 161 7-177 516-686 (725)
28 KOG0144 RNA-binding protein CU 99.9 1.6E-21 3.6E-26 152.5 14.2 180 5-184 123-504 (510)
29 TIGR01645 half-pint poly-U bin 99.9 4.4E-20 9.5E-25 155.0 21.6 78 5-82 203-283 (612)
30 KOG0147 Transcriptional coacti 99.9 2.7E-21 5.9E-26 155.5 13.7 173 5-178 277-522 (549)
31 KOG4206 Spliceosomal protein s 99.9 2.4E-20 5.2E-25 135.1 16.2 171 1-172 4-209 (221)
32 KOG0146 RNA-binding protein ET 99.9 4.1E-21 9E-26 141.8 12.0 177 5-181 18-362 (371)
33 KOG0123 Polyadenylate-binding 99.9 1.2E-20 2.5E-25 151.4 14.5 158 5-174 75-236 (369)
34 KOG0147 Transcriptional coacti 99.8 3.2E-21 7E-26 155.1 7.3 168 5-178 178-352 (549)
35 KOG1457 RNA binding protein (c 99.8 1.3E-19 2.7E-24 130.6 14.4 169 5-173 33-275 (284)
36 KOG0148 Apoptosis-promoting RN 99.8 4.3E-20 9.4E-25 136.6 10.7 139 1-189 1-143 (321)
37 KOG4205 RNA-binding protein mu 99.8 1.1E-19 2.3E-24 141.2 12.1 167 2-183 2-175 (311)
38 KOG1548 Transcription elongati 99.8 2.5E-18 5.4E-23 131.3 17.6 178 5-182 133-350 (382)
39 PLN03134 glycine-rich RNA-bind 99.8 6.7E-19 1.5E-23 123.8 12.9 82 4-85 32-116 (144)
40 KOG0107 Alternative splicing f 99.8 9.9E-19 2.1E-23 121.5 13.2 80 4-85 8-87 (195)
41 KOG1190 Polypyrimidine tract-b 99.8 2.7E-17 5.8E-22 128.3 17.5 167 6-174 297-480 (492)
42 KOG4676 Splicing factor, argin 99.8 3.6E-19 7.8E-24 137.8 6.3 167 4-172 5-214 (479)
43 KOG4211 Splicing factor hnRNP- 99.8 2.1E-17 4.6E-22 131.7 16.3 167 4-185 8-179 (510)
44 KOG0110 RNA-binding protein (R 99.8 1.3E-17 2.8E-22 138.1 14.3 176 4-182 383-596 (725)
45 KOG0107 Alternative splicing f 99.8 1.3E-17 2.9E-22 116.0 11.2 72 107-179 9-80 (195)
46 PLN03120 nucleic acid binding 99.7 3.8E-17 8.2E-22 122.8 11.1 79 6-85 4-82 (260)
47 PF00076 RRM_1: RNA recognitio 99.7 1.2E-17 2.6E-22 103.5 6.9 68 9-76 1-70 (70)
48 TIGR01648 hnRNP-R-Q heterogene 99.7 5.5E-17 1.2E-21 136.3 12.3 127 5-136 232-369 (578)
49 KOG4212 RNA-binding protein hn 99.7 8.8E-16 1.9E-20 120.9 16.8 171 5-175 43-285 (608)
50 KOG1456 Heterogeneous nuclear 99.7 1.9E-15 4.2E-20 116.8 17.3 172 4-177 285-478 (494)
51 KOG0113 U1 small nuclear ribon 99.7 3.4E-16 7.3E-21 117.6 12.7 89 2-90 97-188 (335)
52 KOG0121 Nuclear cap-binding pr 99.7 5.2E-17 1.1E-21 107.2 7.1 78 4-81 34-114 (153)
53 PLN03121 nucleic acid binding 99.7 4.5E-16 9.7E-21 115.2 11.7 80 5-85 4-83 (243)
54 KOG0114 Predicted RNA-binding 99.7 2.5E-16 5.5E-21 100.1 8.8 78 5-82 17-94 (124)
55 KOG1190 Polypyrimidine tract-b 99.7 4.8E-16 1E-20 121.4 11.3 176 3-181 25-223 (492)
56 KOG4207 Predicted splicing fac 99.7 5.1E-16 1.1E-20 110.9 9.3 79 4-82 11-92 (256)
57 KOG0122 Translation initiation 99.7 4.8E-16 1E-20 113.7 9.3 80 4-83 187-269 (270)
58 COG0724 RNA-binding proteins ( 99.7 3.1E-15 6.8E-20 117.1 14.6 140 6-145 115-262 (306)
59 PF14259 RRM_6: RNA recognitio 99.7 3.3E-16 7.1E-21 97.1 7.0 68 9-76 1-70 (70)
60 KOG0120 Splicing factor U2AF, 99.7 1.2E-15 2.7E-20 124.4 12.1 178 4-181 287-490 (500)
61 KOG4207 Predicted splicing fac 99.6 1.3E-15 2.8E-20 108.9 9.7 76 103-178 8-87 (256)
62 PLN03134 glycine-rich RNA-bind 99.6 9.5E-15 2.1E-19 102.8 13.6 79 105-187 31-113 (144)
63 KOG0130 RNA-binding protein RB 99.6 1.2E-15 2.6E-20 101.7 6.5 78 6-83 72-152 (170)
64 TIGR01659 sex-lethal sex-letha 99.6 8E-15 1.7E-19 117.3 11.9 81 5-85 192-277 (346)
65 KOG0124 Polypyrimidine tract-b 99.6 5.5E-14 1.2E-18 108.7 15.8 76 6-81 210-288 (544)
66 KOG0415 Predicted peptidyl pro 99.6 9.9E-16 2.1E-20 117.7 6.1 83 4-86 237-322 (479)
67 smart00362 RRM_2 RNA recogniti 99.6 9.2E-15 2E-19 90.5 9.0 70 8-77 1-71 (72)
68 PLN03213 repressor of silencin 99.6 6.2E-15 1.4E-19 118.0 9.5 78 3-81 7-86 (759)
69 KOG0125 Ataxin 2-binding prote 99.6 5.5E-15 1.2E-19 112.5 8.5 82 4-85 94-176 (376)
70 KOG0149 Predicted RNA-binding 99.6 5.5E-15 1.2E-19 107.8 7.2 76 6-82 12-90 (247)
71 KOG4212 RNA-binding protein hn 99.6 2E-13 4.4E-18 107.8 16.4 76 4-79 213-290 (608)
72 KOG0126 Predicted RNA-binding 99.6 3.2E-16 6.8E-21 109.8 0.4 83 4-86 33-118 (219)
73 PF00076 RRM_1: RNA recognitio 99.6 3.6E-14 7.8E-19 87.7 8.6 66 111-176 1-69 (70)
74 KOG0129 Predicted RNA-binding 99.5 4E-13 8.7E-18 108.3 14.5 166 5-173 258-444 (520)
75 cd00590 RRM RRM (RNA recogniti 99.5 1.2E-13 2.7E-18 85.8 9.3 72 8-79 1-74 (74)
76 smart00360 RRM RNA recognition 99.5 1E-13 2.3E-18 85.4 8.2 67 11-77 1-70 (71)
77 PF13893 RRM_5: RNA recognitio 99.5 1.3E-13 2.7E-18 81.4 7.8 56 23-80 1-56 (56)
78 KOG1456 Heterogeneous nuclear 99.5 6.7E-13 1.5E-17 102.9 13.4 166 4-187 29-198 (494)
79 KOG1365 RNA-binding protein Fu 99.5 1.3E-13 2.8E-18 107.2 8.8 174 7-185 162-359 (508)
80 KOG0111 Cyclophilin-type pepti 99.5 6.2E-14 1.3E-18 101.3 5.4 85 4-88 8-95 (298)
81 KOG0108 mRNA cleavage and poly 99.5 2.8E-13 6E-18 110.1 9.2 79 7-85 19-100 (435)
82 PLN03120 nucleic acid binding 99.4 9.2E-13 2E-17 99.3 10.2 70 108-178 4-74 (260)
83 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.5E-17 100.0 10.6 80 104-187 92-173 (376)
84 PF14259 RRM_6: RNA recognitio 99.4 6.8E-13 1.5E-17 82.0 7.4 65 111-175 1-68 (70)
85 KOG0130 RNA-binding protein RB 99.4 1.1E-12 2.3E-17 87.7 7.6 72 105-176 69-144 (170)
86 KOG0117 Heterogeneous nuclear 99.4 1E-12 2.2E-17 104.1 7.5 77 6-87 259-335 (506)
87 KOG0109 RNA-binding protein LA 99.4 1.1E-12 2.4E-17 98.6 6.3 77 3-84 75-151 (346)
88 KOG0114 Predicted RNA-binding 99.4 8.3E-12 1.8E-16 79.7 9.0 80 103-186 13-93 (124)
89 smart00361 RRM_1 RNA recogniti 99.4 3.6E-12 7.8E-17 78.6 7.3 58 20-77 2-69 (70)
90 KOG0120 Splicing factor U2AF, 99.4 5.4E-12 1.2E-16 103.4 9.8 172 4-179 173-364 (500)
91 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.8E-16 76.1 9.2 67 110-176 1-69 (72)
92 PLN03121 nucleic acid binding 99.3 1.2E-11 2.5E-16 92.0 10.1 69 107-176 4-73 (243)
93 PLN03213 repressor of silencin 99.3 7.8E-12 1.7E-16 100.5 9.5 77 107-187 9-87 (759)
94 KOG0122 Translation initiation 99.3 2.7E-11 5.8E-16 89.1 11.2 80 105-188 186-269 (270)
95 KOG0132 RNA polymerase II C-te 99.3 7.4E-12 1.6E-16 105.3 8.7 78 5-85 420-497 (894)
96 KOG0121 Nuclear cap-binding pr 99.3 7.1E-12 1.5E-16 83.1 6.8 78 106-187 34-115 (153)
97 KOG0113 U1 small nuclear ribon 99.3 6.3E-11 1.4E-15 89.6 12.4 75 104-178 97-175 (335)
98 KOG4208 Nucleolar RNA-binding 99.3 1.7E-11 3.6E-16 88.1 7.9 80 4-83 47-130 (214)
99 smart00360 RRM RNA recognition 99.3 7.1E-11 1.5E-15 72.5 8.8 64 113-176 1-68 (71)
100 KOG0112 Large RNA-binding prot 99.2 5.8E-12 1.3E-16 107.5 4.4 150 4-176 370-521 (975)
101 cd00590 RRM RRM (RNA recogniti 99.2 1.3E-10 2.9E-15 71.9 9.3 68 110-177 1-71 (74)
102 KOG0105 Alternative splicing f 99.2 6.2E-11 1.3E-15 83.7 8.5 79 107-189 5-84 (241)
103 KOG4211 Splicing factor hnRNP- 99.2 5.8E-10 1.3E-14 89.8 14.6 166 5-173 102-347 (510)
104 KOG0149 Predicted RNA-binding 99.2 6.9E-11 1.5E-15 86.6 7.6 72 107-179 11-86 (247)
105 PF13893 RRM_5: RNA recognitio 99.2 1.6E-10 3.5E-15 68.0 7.6 52 125-177 1-52 (56)
106 KOG2193 IGF-II mRNA-binding pr 99.2 3.3E-12 7.2E-17 100.7 0.5 151 7-183 2-157 (584)
107 KOG0131 Splicing factor 3b, su 99.2 4.9E-11 1.1E-15 84.0 6.0 75 104-178 5-83 (203)
108 KOG0153 Predicted RNA-binding 99.2 1.1E-10 2.4E-15 90.0 8.5 76 4-82 226-302 (377)
109 KOG0146 RNA-binding protein ET 99.2 3.9E-11 8.5E-16 89.4 5.6 81 3-83 282-365 (371)
110 KOG4454 RNA binding protein (R 99.2 6.3E-12 1.4E-16 90.9 0.9 134 4-166 7-145 (267)
111 KOG4660 Protein Mei2, essentia 99.1 1E-10 2.2E-15 95.4 4.0 165 3-173 72-239 (549)
112 KOG0415 Predicted peptidyl pro 99.0 7.9E-09 1.7E-13 80.2 12.6 72 105-176 236-311 (479)
113 KOG0533 RRM motif-containing p 99.0 2.4E-09 5.3E-14 80.6 9.4 83 4-86 81-165 (243)
114 COG0724 RNA-binding proteins ( 99.0 3.1E-09 6.7E-14 83.1 9.6 70 108-177 115-188 (306)
115 KOG0108 mRNA cleavage and poly 99.0 1.3E-09 2.9E-14 88.9 7.6 78 109-190 19-100 (435)
116 KOG0126 Predicted RNA-binding 99.0 6E-11 1.3E-15 83.5 -0.2 71 107-177 34-108 (219)
117 smart00361 RRM_1 RNA recogniti 99.0 3.9E-09 8.5E-14 65.0 7.8 56 122-177 2-68 (70)
118 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.8E-09 1E-13 86.1 9.6 82 5-86 404-488 (940)
119 KOG0128 RNA-binding protein SA 98.9 6.5E-11 1.4E-15 100.8 -2.0 137 5-177 666-808 (881)
120 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.6E-13 66.1 8.6 75 7-81 2-85 (97)
121 KOG1365 RNA-binding protein Fu 98.9 3.1E-08 6.6E-13 77.8 12.3 165 3-172 57-231 (508)
122 KOG0116 RasGAP SH3 binding pro 98.9 4.4E-09 9.4E-14 85.5 7.0 75 7-82 289-366 (419)
123 KOG4210 Nuclear localization s 98.8 6.3E-09 1.4E-13 81.1 6.3 173 5-191 87-267 (285)
124 KOG0111 Cyclophilin-type pepti 98.8 4.4E-09 9.5E-14 76.5 4.6 83 107-193 9-95 (298)
125 KOG4206 Spliceosomal protein s 98.8 2.2E-08 4.7E-13 73.4 7.9 71 107-177 8-83 (221)
126 KOG4209 Splicing factor RNPS1, 98.8 8.4E-09 1.8E-13 77.9 5.7 76 5-81 100-178 (231)
127 KOG0151 Predicted splicing reg 98.8 1.7E-08 3.6E-13 84.9 7.0 80 4-83 172-257 (877)
128 KOG4307 RNA binding protein RB 98.8 4.8E-08 1E-12 82.0 8.8 173 5-183 310-509 (944)
129 KOG4205 RNA-binding protein mu 98.8 2.1E-08 4.6E-13 78.6 6.4 82 6-88 97-181 (311)
130 PF11608 Limkain-b1: Limkain b 98.7 9.9E-08 2.1E-12 59.0 7.6 69 7-82 3-76 (90)
131 KOG0226 RNA-binding proteins [ 98.7 4.3E-08 9.4E-13 72.9 5.9 156 9-177 99-263 (290)
132 KOG0533 RRM motif-containing p 98.6 2.5E-07 5.5E-12 69.9 8.0 74 107-180 82-158 (243)
133 KOG0132 RNA polymerase II C-te 98.6 3.7E-07 7.9E-12 77.8 9.0 75 107-187 420-494 (894)
134 KOG4661 Hsp27-ERE-TATA-binding 98.6 3.8E-07 8.3E-12 75.3 8.8 71 107-177 404-478 (940)
135 KOG0153 Predicted RNA-binding 98.5 5.1E-07 1.1E-11 70.2 8.2 76 106-187 226-302 (377)
136 KOG0226 RNA-binding proteins [ 98.5 1.3E-07 2.8E-12 70.4 4.6 76 5-80 189-267 (290)
137 KOG4208 Nucleolar RNA-binding 98.5 7E-07 1.5E-11 64.6 7.9 75 106-180 47-126 (214)
138 PF04059 RRM_2: RNA recognitio 98.5 1.8E-06 3.9E-11 56.0 8.7 66 109-174 2-73 (97)
139 PF08777 RRM_3: RNA binding mo 98.4 5.4E-07 1.2E-11 59.7 5.5 59 109-169 2-60 (105)
140 PF08777 RRM_3: RNA binding mo 98.4 7.7E-07 1.7E-11 59.0 6.0 69 7-78 2-75 (105)
141 KOG4454 RNA binding protein (R 98.4 1.9E-07 4.2E-12 68.0 2.9 79 105-183 6-86 (267)
142 KOG4660 Protein Mei2, essentia 98.4 2.9E-07 6.3E-12 75.6 4.1 71 106-177 73-143 (549)
143 KOG0151 Predicted splicing reg 98.4 1.7E-06 3.6E-11 73.2 8.0 81 101-185 167-254 (877)
144 KOG0116 RasGAP SH3 binding pro 98.3 5.3E-06 1.2E-10 67.8 10.3 76 107-187 287-366 (419)
145 KOG1457 RNA binding protein (c 98.3 3.9E-06 8.5E-11 61.5 8.5 80 107-187 33-117 (284)
146 PF11608 Limkain-b1: Limkain b 98.3 5E-06 1.1E-10 51.5 7.6 66 110-185 4-74 (90)
147 KOG0106 Alternative splicing f 98.3 3.9E-07 8.4E-12 67.4 3.2 70 3-77 96-165 (216)
148 KOG2202 U2 snRNP splicing fact 98.3 3.7E-07 8.1E-12 68.2 2.7 61 21-81 83-146 (260)
149 KOG4307 RNA binding protein RB 98.2 9.4E-06 2E-10 68.7 8.7 77 3-79 863-943 (944)
150 KOG3152 TBP-binding protein, a 98.2 1E-06 2.2E-11 65.8 2.6 71 5-75 73-158 (278)
151 PF14605 Nup35_RRM_2: Nup53/35 98.1 9.9E-06 2.1E-10 46.6 5.4 53 6-62 1-53 (53)
152 KOG1995 Conserved Zn-finger pr 98.1 4.1E-06 9E-11 65.6 4.3 80 5-84 65-155 (351)
153 COG5175 MOT2 Transcriptional r 98.0 2.1E-05 4.5E-10 61.3 6.8 76 6-81 114-201 (480)
154 KOG1548 Transcription elongati 98.0 9.3E-05 2E-09 57.9 10.1 78 104-185 130-218 (382)
155 KOG4210 Nuclear localization s 98.0 6.5E-06 1.4E-10 64.4 3.5 83 2-85 180-266 (285)
156 KOG4849 mRNA cleavage factor I 97.9 1.2E-05 2.5E-10 62.9 4.2 78 4-81 78-160 (498)
157 KOG2314 Translation initiation 97.9 5.9E-05 1.3E-09 62.6 7.8 77 5-81 57-142 (698)
158 KOG4209 Splicing factor RNPS1, 97.9 0.00012 2.6E-09 55.6 8.8 71 106-177 99-173 (231)
159 PF05172 Nup35_RRM: Nup53/35/4 97.8 9.2E-05 2E-09 48.4 6.7 74 5-80 5-89 (100)
160 KOG0129 Predicted RNA-binding 97.8 0.0001 2.2E-09 60.6 8.0 61 4-64 368-432 (520)
161 KOG2202 U2 snRNP splicing fact 97.8 2.1E-05 4.6E-10 59.0 3.7 58 123-180 83-144 (260)
162 PF08952 DUF1866: Domain of un 97.8 0.00016 3.6E-09 50.1 7.3 75 3-83 24-107 (146)
163 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.0002 4.3E-09 46.8 7.0 69 107-177 5-84 (100)
164 KOG0112 Large RNA-binding prot 97.7 6.9E-05 1.5E-09 65.4 5.5 80 3-85 452-533 (975)
165 KOG1996 mRNA splicing factor [ 97.7 0.00016 3.5E-09 55.4 6.8 56 122-177 300-360 (378)
166 KOG2416 Acinus (induces apopto 97.7 5.5E-05 1.2E-09 63.1 4.2 75 4-81 442-520 (718)
167 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 41.2 5.2 51 110-163 3-53 (53)
168 KOG3152 TBP-binding protein, a 97.6 3E-05 6.6E-10 58.1 2.3 70 108-177 74-159 (278)
169 KOG1855 Predicted RNA-binding 97.6 5.6E-05 1.2E-09 60.7 3.9 63 5-67 230-308 (484)
170 KOG0128 RNA-binding protein SA 97.6 0.0001 2.3E-09 64.0 5.7 78 6-83 736-815 (881)
171 KOG0115 RNA-binding protein p5 97.6 0.00019 4.1E-09 54.0 6.0 96 57-178 6-104 (275)
172 KOG1996 mRNA splicing factor [ 97.4 0.00049 1.1E-08 52.8 6.4 61 20-80 300-364 (378)
173 PF10309 DUF2414: Protein of u 97.4 0.002 4.4E-08 38.0 7.0 54 109-166 6-62 (62)
174 PF08675 RNA_bind: RNA binding 97.3 0.0016 3.4E-08 40.6 6.5 54 7-66 10-63 (87)
175 KOG1855 Predicted RNA-binding 97.3 0.00096 2.1E-08 53.8 6.4 67 104-170 227-310 (484)
176 COG5175 MOT2 Transcriptional r 97.2 0.0013 2.8E-08 51.5 6.6 72 107-178 113-197 (480)
177 KOG2314 Translation initiation 97.2 0.0008 1.7E-08 56.1 5.8 68 107-174 57-133 (698)
178 PF15023 DUF4523: Protein of u 97.2 0.0043 9.2E-08 42.7 8.2 74 3-81 83-160 (166)
179 KOG0804 Cytoplasmic Zn-finger 97.1 0.0059 1.3E-07 49.8 9.5 68 5-72 73-142 (493)
180 KOG2253 U1 snRNP complex, subu 97.1 2.2E-05 4.7E-10 66.2 -4.5 123 4-133 38-160 (668)
181 KOG2416 Acinus (induces apopto 97.1 0.00038 8.3E-09 58.3 2.6 66 105-172 441-507 (718)
182 PF07576 BRAP2: BRCA1-associat 97.0 0.0098 2.1E-07 39.7 8.3 67 5-71 12-80 (110)
183 PF08675 RNA_bind: RNA binding 97.0 0.0045 9.8E-08 38.6 5.9 58 106-168 7-64 (87)
184 PF10309 DUF2414: Protein of u 96.9 0.01 2.3E-07 35.0 7.0 53 7-65 6-62 (62)
185 PF08952 DUF1866: Domain of un 96.8 0.0078 1.7E-07 41.9 6.7 56 123-183 51-106 (146)
186 KOG2591 c-Mpl binding protein, 96.7 0.0026 5.6E-08 53.1 4.7 70 5-78 174-247 (684)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0014 3.1E-08 47.8 2.4 81 4-84 5-99 (176)
188 KOG0835 Cyclin L [General func 96.5 0.0018 3.9E-08 50.7 2.4 19 45-63 173-191 (367)
189 KOG2135 Proteins containing th 96.3 0.0039 8.5E-08 51.1 3.5 75 6-84 372-447 (526)
190 PF04847 Calcipressin: Calcipr 96.3 0.019 4E-07 42.1 6.7 62 19-83 8-71 (184)
191 KOG4676 Splicing factor, argin 96.2 0.0054 1.2E-07 49.1 3.7 64 110-174 9-79 (479)
192 KOG1995 Conserved Zn-finger pr 96.2 0.0098 2.1E-07 47.1 5.0 72 105-176 63-146 (351)
193 KOG0115 RNA-binding protein p5 96.1 0.0078 1.7E-07 45.5 3.8 75 7-81 32-112 (275)
194 KOG2135 Proteins containing th 96.1 0.01 2.2E-07 48.7 4.6 71 110-187 374-445 (526)
195 PF07576 BRAP2: BRCA1-associat 96.1 0.12 2.5E-06 34.6 8.9 65 109-173 14-81 (110)
196 KOG0835 Cyclin L [General func 96.0 0.0048 1E-07 48.4 2.3 11 119-129 212-222 (367)
197 PF03880 DbpA: DbpA RNA bindin 95.9 0.056 1.2E-06 33.3 6.6 66 8-80 2-74 (74)
198 PF07292 NID: Nmi/IFP 35 domai 95.9 0.021 4.6E-07 36.3 4.7 82 48-146 1-83 (88)
199 KOG2591 c-Mpl binding protein, 95.9 0.028 6.1E-07 47.2 6.3 74 106-182 173-250 (684)
200 KOG2068 MOT2 transcription fac 95.7 0.0046 9.9E-08 48.6 1.1 75 7-81 78-161 (327)
201 PF10567 Nab6_mRNP_bdg: RNA-re 95.7 0.64 1.4E-05 36.3 12.4 161 6-167 15-212 (309)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.045 9.7E-07 39.9 5.2 69 107-175 6-84 (176)
203 KOG4285 Mitotic phosphoprotein 95.2 0.099 2.1E-06 40.7 6.8 70 7-81 198-268 (350)
204 KOG0804 Cytoplasmic Zn-finger 94.9 0.14 3E-06 42.1 7.3 66 108-173 74-142 (493)
205 KOG4285 Mitotic phosphoprotein 94.8 0.26 5.6E-06 38.5 8.0 66 107-176 196-261 (350)
206 KOG2318 Uncharacterized conser 94.6 0.18 4E-06 42.8 7.4 80 3-82 171-307 (650)
207 KOG4849 mRNA cleavage factor I 94.4 0.046 9.9E-07 43.4 3.3 69 107-175 79-153 (498)
208 KOG2193 IGF-II mRNA-binding pr 94.3 0.0015 3.2E-08 52.8 -5.0 77 6-82 80-156 (584)
209 KOG4574 RNA-binding protein (c 93.8 0.068 1.5E-06 47.3 3.4 75 11-88 303-379 (1007)
210 PF14111 DUF4283: Domain of un 93.8 0.093 2E-06 37.2 3.7 112 17-144 28-141 (153)
211 PF15023 DUF4523: Protein of u 93.6 0.22 4.8E-06 34.5 5.0 60 107-169 85-148 (166)
212 PF11767 SET_assoc: Histone ly 92.5 0.93 2E-05 27.2 6.0 55 17-77 11-65 (66)
213 KOG2068 MOT2 transcription fac 92.5 0.065 1.4E-06 42.4 1.4 68 109-176 78-155 (327)
214 PF04847 Calcipressin: Calcipr 92.2 0.55 1.2E-05 34.5 5.8 59 121-181 8-68 (184)
215 KOG2253 U1 snRNP complex, subu 90.8 0.32 6.9E-06 42.0 3.7 69 103-176 35-103 (668)
216 KOG4574 RNA-binding protein (c 88.7 0.26 5.6E-06 43.9 1.7 58 113-172 303-360 (1007)
217 KOG2888 Putative RNA binding p 88.2 0.18 3.9E-06 39.8 0.5 13 18-30 169-181 (453)
218 KOG4246 Predicted DNA-binding 86.3 0.28 6E-06 43.6 0.6 10 46-55 60-69 (1194)
219 PF11767 SET_assoc: Histone ly 85.1 6.2 0.00013 23.7 5.9 52 119-175 11-62 (66)
220 KOG2888 Putative RNA binding p 84.6 0.31 6.8E-06 38.5 0.2 8 45-52 160-167 (453)
221 KOG4483 Uncharacterized conser 84.5 3.2 7E-05 34.0 5.7 56 107-165 390-446 (528)
222 PF03468 XS: XS domain; Inter 83.1 1.6 3.5E-05 29.5 3.1 56 8-63 10-75 (116)
223 PRK14548 50S ribosomal protein 82.4 7.5 0.00016 24.6 5.7 56 9-64 23-80 (84)
224 TIGR03636 L23_arch archaeal ri 80.9 10 0.00022 23.5 5.8 55 9-63 16-72 (77)
225 PF03880 DbpA: DbpA RNA bindin 80.4 11 0.00023 23.0 6.2 56 118-178 11-71 (74)
226 KOG4019 Calcineurin-mediated s 78.5 2.6 5.6E-05 30.6 2.9 74 7-83 11-90 (193)
227 KOG4019 Calcineurin-mediated s 77.6 2.1 4.5E-05 31.1 2.3 68 110-179 12-85 (193)
228 KOG2318 Uncharacterized conser 77.2 19 0.00042 31.2 8.0 69 106-174 172-296 (650)
229 COG5638 Uncharacterized conser 76.5 12 0.00025 31.0 6.4 80 2-81 142-296 (622)
230 KOG1295 Nonsense-mediated deca 75.9 3.5 7.5E-05 33.6 3.3 65 6-70 7-77 (376)
231 PF00937 Corona_nucleoca: Coro 75.5 0.94 2E-05 36.6 0.1 10 188-197 165-174 (355)
232 KOG4483 Uncharacterized conser 72.5 11 0.00025 31.0 5.4 56 6-64 391-446 (528)
233 PF14893 PNMA: PNMA 70.9 6.1 0.00013 32.0 3.7 78 1-81 13-95 (331)
234 PF15513 DUF4651: Domain of un 70.6 12 0.00027 22.0 3.9 19 21-39 9-27 (62)
235 PF07292 NID: Nmi/IFP 35 domai 67.6 2.8 6.1E-05 26.7 0.9 26 3-28 49-74 (88)
236 KOG2295 C2H2 Zn-finger protein 67.0 0.7 1.5E-05 39.2 -2.3 67 5-71 230-299 (648)
237 PF09707 Cas_Cas2CT1978: CRISP 65.7 19 0.00041 22.9 4.4 49 5-53 24-72 (86)
238 KOG0796 Spliceosome subunit [R 65.5 3 6.6E-05 33.1 0.9 7 127-133 187-193 (319)
239 COG0018 ArgS Arginyl-tRNA synt 65.4 73 0.0016 28.2 9.3 101 18-145 58-167 (577)
240 PF03439 Spt5-NGN: Early trans 65.2 12 0.00025 23.6 3.4 28 42-69 41-68 (84)
241 KOG4410 5-formyltetrahydrofola 64.2 10 0.00022 29.8 3.4 49 6-56 330-378 (396)
242 cd04889 ACT_PDH-BS-like C-term 64.0 24 0.00051 19.8 6.0 43 20-62 12-55 (56)
243 TIGR03636 L23_arch archaeal ri 62.6 35 0.00075 21.2 5.9 56 111-166 16-74 (77)
244 KOG4008 rRNA processing protei 61.3 8.4 0.00018 29.3 2.5 35 4-38 38-72 (261)
245 PRK14548 50S ribosomal protein 61.2 39 0.00085 21.3 6.1 54 113-166 25-81 (84)
246 PF02714 DUF221: Domain of unk 60.0 28 0.0006 28.0 5.6 32 48-81 1-32 (325)
247 PF02829 3H: 3H domain; Inter 59.2 43 0.00094 21.9 5.3 52 16-67 7-58 (98)
248 KOG3580 Tight junction protein 58.2 29 0.00064 30.4 5.5 41 103-143 56-97 (1027)
249 PTZ00191 60S ribosomal protein 57.4 50 0.0011 23.3 5.7 54 9-62 84-139 (145)
250 KOG4213 RNA-binding protein La 57.2 18 0.00039 26.4 3.5 47 18-64 118-169 (205)
251 PF08734 GYD: GYD domain; Int 56.2 51 0.0011 21.1 6.1 45 122-166 22-67 (91)
252 PRK10629 EnvZ/OmpR regulon mod 55.9 64 0.0014 22.2 8.2 72 5-81 34-109 (127)
253 PRK11558 putative ssRNA endonu 55.7 32 0.00069 22.4 4.2 50 6-55 27-76 (97)
254 KOG1295 Nonsense-mediated deca 55.6 15 0.00034 30.0 3.3 65 109-173 8-79 (376)
255 PF10567 Nab6_mRNP_bdg: RNA-re 52.8 44 0.00095 26.5 5.2 55 107-161 14-79 (309)
256 cd04908 ACT_Bt0572_1 N-termina 51.7 47 0.001 19.4 6.4 44 19-63 14-58 (66)
257 KOG2891 Surface glycoprotein [ 51.6 27 0.00059 27.3 4.0 66 5-70 148-247 (445)
258 PF11823 DUF3343: Protein of u 51.5 24 0.00052 21.4 3.1 29 46-74 2-30 (73)
259 PF11823 DUF3343: Protein of u 48.2 19 0.00042 21.8 2.3 29 148-176 3-31 (73)
260 PF00906 Hepatitis_core: Hepat 46.7 6.5 0.00014 28.0 0.0 9 125-133 114-122 (187)
261 PF15063 TC1: Thyroid cancer p 45.8 15 0.00032 22.5 1.4 24 10-33 29-52 (79)
262 KOG1888 Putative phosphoinosit 45.7 57 0.0012 29.8 5.5 66 7-76 310-379 (868)
263 PRK08559 nusG transcription an 44.6 1.1E+02 0.0024 21.6 6.2 33 33-67 36-68 (153)
264 CHL00123 rps6 ribosomal protei 43.0 91 0.002 20.2 5.3 51 14-64 14-81 (97)
265 PTZ00191 60S ribosomal protein 42.3 1.2E+02 0.0026 21.4 6.1 55 111-165 84-141 (145)
266 TIGR01873 cas_CT1978 CRISPR-as 41.7 70 0.0015 20.4 4.1 48 6-54 25-74 (87)
267 KOG4410 5-formyltetrahydrofola 40.9 1.8E+02 0.004 23.1 8.4 48 107-156 329-377 (396)
268 KOG2295 C2H2 Zn-finger protein 40.1 6.7 0.00015 33.7 -0.8 69 106-174 229-301 (648)
269 PF12829 Mhr1: Transcriptional 40.0 66 0.0014 20.7 3.8 53 115-167 19-72 (91)
270 PF14893 PNMA: PNMA 37.4 26 0.00057 28.4 2.1 25 107-131 17-41 (331)
271 PF09902 DUF2129: Uncharacteri 35.2 1.1E+02 0.0023 18.7 4.3 39 26-70 16-54 (71)
272 PRK11901 hypothetical protein; 35.0 1.9E+02 0.0041 23.5 6.4 61 107-171 244-309 (327)
273 COG5193 LHP1 La protein, small 34.7 21 0.00046 29.5 1.2 58 7-64 175-245 (438)
274 PF02714 DUF221: Domain of unk 33.9 57 0.0012 26.2 3.6 23 149-171 1-23 (325)
275 PRK08559 nusG transcription an 32.7 1.8E+02 0.0039 20.6 6.1 29 140-168 40-68 (153)
276 PF11411 DNA_ligase_IV: DNA li 32.6 37 0.0008 17.6 1.5 16 16-31 19-34 (36)
277 KOG0156 Cytochrome P450 CYP2 s 32.2 1.3E+02 0.0028 26.0 5.6 59 10-75 36-97 (489)
278 PF07530 PRE_C2HC: Associated 31.8 1.2E+02 0.0026 18.2 4.6 58 21-81 2-63 (68)
279 PRK11230 glycolate oxidase sub 31.5 1.4E+02 0.0031 25.9 5.7 47 20-66 203-255 (499)
280 PF15407 Spo7_2_N: Sporulation 31.5 15 0.00034 22.0 -0.0 24 4-27 25-48 (67)
281 COG5227 SMT3 Ubiquitin-like pr 31.1 1.5E+02 0.0032 19.1 4.7 65 2-67 30-100 (103)
282 TIGR00405 L26e_arch ribosomal 31.1 1.8E+02 0.004 20.2 5.9 29 39-67 32-60 (145)
283 cd00027 BRCT Breast Cancer Sup 31.1 83 0.0018 17.7 3.3 27 7-33 2-28 (72)
284 PF01071 GARS_A: Phosphoribosy 30.8 2.3E+02 0.005 21.2 6.5 59 18-77 24-85 (194)
285 PRK11634 ATP-dependent RNA hel 30.1 2E+02 0.0044 25.9 6.5 67 8-81 488-561 (629)
286 PRK11901 hypothetical protein; 30.1 2.3E+02 0.005 23.1 6.1 59 5-67 244-306 (327)
287 PF08544 GHMP_kinases_C: GHMP 29.6 1.3E+02 0.0029 18.1 6.2 44 123-167 37-80 (85)
288 KOG4008 rRNA processing protei 29.1 48 0.001 25.4 2.2 32 109-140 41-72 (261)
289 KOG2146 Splicing coactivator S 28.9 53 0.0011 26.0 2.4 31 49-79 56-87 (354)
290 KOG2891 Surface glycoprotein [ 28.8 68 0.0015 25.2 3.0 143 45-187 75-267 (445)
291 PRK05738 rplW 50S ribosomal pr 28.4 1.7E+02 0.0036 18.8 5.2 30 9-38 22-53 (92)
292 PRK02302 hypothetical protein; 27.3 1.7E+02 0.0038 18.7 4.3 39 26-70 22-60 (89)
293 PF05189 RTC_insert: RNA 3'-te 27.3 1.7E+02 0.0037 18.9 4.4 45 8-52 12-64 (103)
294 PHA01632 hypothetical protein 27.0 1.3E+02 0.0029 17.2 4.0 21 111-131 19-39 (64)
295 cd04879 ACT_3PGDH-like ACT_3PG 26.4 1.3E+02 0.0029 17.0 5.0 46 10-55 3-50 (71)
296 PRK02886 hypothetical protein; 26.2 1.8E+02 0.004 18.5 4.3 39 26-70 20-58 (87)
297 PF01037 AsnC_trans_reg: AsnC 25.8 1.5E+02 0.0032 17.3 6.7 44 122-165 12-55 (74)
298 PF00403 HMA: Heavy-metal-asso 25.5 1.4E+02 0.003 16.9 6.5 54 8-64 1-58 (62)
299 PF09869 DUF2096: Uncharacteri 25.5 2.7E+02 0.0058 20.2 6.4 50 9-66 115-164 (169)
300 COG0150 PurM Phosphoribosylami 25.4 42 0.0009 27.3 1.4 49 19-68 274-322 (345)
301 PF12623 Hen1_L: RNA repair, l 25.3 1.9E+02 0.0041 22.3 4.7 58 8-65 120-183 (245)
302 KOG3580 Tight junction protein 24.9 88 0.0019 27.7 3.2 14 47-60 63-76 (1027)
303 KOG4365 Uncharacterized conser 24.9 11 0.00025 31.4 -1.8 74 7-81 4-80 (572)
304 PRK01178 rps24e 30S ribosomal 24.8 1.9E+02 0.0042 18.9 4.2 45 16-61 29-81 (99)
305 COG3254 Uncharacterized conser 24.5 2.2E+02 0.0047 18.9 5.7 43 122-164 26-69 (105)
306 PF00276 Ribosomal_L23: Riboso 24.0 2E+02 0.0044 18.3 4.1 47 10-56 23-84 (91)
307 PRK15464 cold shock-like prote 23.8 56 0.0012 19.8 1.5 12 43-54 14-25 (70)
308 PF10281 Ish1: Putative stress 23.6 86 0.0019 16.2 2.0 17 17-33 3-19 (38)
309 smart00596 PRE_C2HC PRE_C2HC d 23.4 1.8E+02 0.004 17.6 4.2 58 21-81 2-63 (69)
310 PHA03075 glutaredoxin-like pro 22.9 1.8E+02 0.0039 19.7 3.7 11 41-51 77-87 (123)
311 KOG2187 tRNA uracil-5-methyltr 22.3 98 0.0021 26.9 3.0 39 45-83 63-101 (534)
312 KOG1999 RNA polymerase II tran 22.2 2.9E+02 0.0063 26.2 6.0 34 43-77 208-241 (1024)
313 PRK09937 stationary phase/star 21.4 77 0.0017 19.4 1.7 11 43-53 11-21 (74)
314 PF08442 ATP-grasp_2: ATP-gras 21.3 2.5E+02 0.0054 21.1 4.8 54 18-71 25-81 (202)
315 PF11387 DUF2795: Protein of u 21.3 1.5E+02 0.0033 15.9 4.4 40 113-173 1-40 (44)
316 PF00313 CSD: 'Cold-shock' DNA 21.3 75 0.0016 18.6 1.7 12 44-55 11-22 (66)
317 TIGR02381 cspD cold shock doma 21.3 75 0.0016 19.0 1.7 38 44-82 12-55 (68)
318 cd04909 ACT_PDH-BS C-terminal 21.2 1.8E+02 0.0039 16.8 5.7 47 19-65 14-62 (69)
319 PRK10943 cold shock-like prote 21.2 73 0.0016 19.1 1.6 39 43-81 13-56 (69)
320 PRK09507 cspE cold shock prote 21.1 73 0.0016 19.1 1.6 11 44-54 14-24 (69)
321 PRK10905 cell division protein 20.7 3.2E+02 0.0069 22.2 5.3 60 108-170 247-310 (328)
322 cd04882 ACT_Bt0572_2 C-termina 20.5 1.8E+02 0.0038 16.3 5.3 43 21-63 14-58 (65)
323 PF03389 MobA_MobL: MobA/MobL 20.5 2.1E+02 0.0045 21.7 4.2 46 10-55 71-124 (216)
324 TIGR00387 glcD glycolate oxida 20.4 2.6E+02 0.0056 23.5 5.2 50 16-65 142-197 (413)
325 PRK14998 cold shock-like prote 20.1 86 0.0019 19.1 1.8 12 43-54 11-22 (73)
326 PRK15463 cold shock-like prote 20.0 77 0.0017 19.1 1.5 38 44-81 15-57 (70)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.5e-33 Score=219.64 Aligned_cols=159 Identities=26% Similarity=0.413 Sum_probs=139.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
...++|||+|||+++|+++|+++|+.||.|+.|+|.. ++.++|||||+|.++++|++|++.||+..+.+++|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999965 5678999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~ 156 (226)
.+... ....++|||.|||..+++++|+++|..||.|..+.++.+..+ ++|||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 53211 123457999999999999999999999999999999887643 5999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEE
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
++|.+|++.||+..+.+......++
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEE
Confidence 9999999999999998754333333
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.3e-30 Score=216.38 Aligned_cols=171 Identities=22% Similarity=0.345 Sum_probs=141.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
...++|||+|||+.+++++|+++|..||.|..|.+.. +++++|||||+|.+.++|++|++.|||..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999965 5789999999999999999999999999999999999865
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~ 156 (226)
......... ............+|||+||+..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 185 ~~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 185 SNMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ccccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 432111000 000011122456899999999999999999999999999999998754 46999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeec
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
++|.+|+..||+..++|+ ++++....
T Consensus 257 e~A~kAI~amNg~elgGr----~LrV~kAi 282 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQ----YLRVGKCV 282 (612)
T ss_pred HHHHHHHHHhCCCeeCCe----EEEEEecC
Confidence 999999999999999995 55555443
No 3
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=176.53 Aligned_cols=193 Identities=64% Similarity=1.061 Sum_probs=162.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
|+++.+++|||+|||.++-+.+|+++|-+||.|..|.+........||||+|+++.+|+.|+..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999777677899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCC---------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEE
Q 027194 81 HGGRGRSSSDRHSSHSSG---------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIV 151 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v 151 (226)
....... .....+... ...++.......|.|.+||...+|++|++.+.+.|.|.+..+.++. ++.|
T Consensus 81 rggr~s~--~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV 155 (241)
T KOG0105|consen 81 RGGRSSS--DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVV 155 (241)
T ss_pred cCCCccc--ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceee
Confidence 8765222 111111111 1234566678899999999999999999999999999999998884 8999
Q ss_pred EeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecCCCCCCCCCCCC
Q 027194 152 DYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSRG 198 (226)
Q Consensus 152 ~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~~~~srs~~r~ 198 (226)
+|...++.+.|+.+|..+.+...-...+|.+..+....+...+..+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~~g~~~a~a 202 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQGGISGARA 202 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCcccccccCcc
Confidence 99999999999999999999886678999999886654443333333
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=6.5e-30 Score=207.09 Aligned_cols=153 Identities=24% Similarity=0.426 Sum_probs=136.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++|||+|||+.+|+++|+++|..||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999965 47789999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~ 157 (226)
+... .....+|||.|||..+++++|.++|..||.|..+.++.+. ..|+|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4221 1234579999999999999999999999999999887764 3469999999999
Q ss_pred HHHHHHHHcCCccccccee
Q 027194 158 DMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 158 ~A~~a~~~l~~~~~~g~~~ 176 (226)
+|..|++.|||..+.|...
T Consensus 143 ~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred HHHHHHHHhCCCccCCCce
Confidence 9999999999999988544
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-30 Score=191.12 Aligned_cols=169 Identities=20% Similarity=0.329 Sum_probs=144.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.--|||+-|.+.++.++|++.|.+||+|.+++|++ ++++|||+||.|.+.++|+.|+..|||..|.+|.|.-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34689999999999999999999999999999966 589999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHH
Q 027194 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a 162 (226)
++....... ..-..-.......+++||++|++..+++++|++.|+.||.|..|+|++++ ||+||.|.+.|.|.+|
T Consensus 142 Kp~e~n~~~---ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 142 KPSEMNGKP---LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHA 216 (321)
T ss_pred CccccCCCC---ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHH
Confidence 652111110 00001123445678999999999999999999999999999999999987 4999999999999999
Q ss_pred HHHcCCcccccceeeeE
Q 027194 163 IKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 163 ~~~l~~~~~~g~~~~~~ 179 (226)
+..|||.++.|..++++
T Consensus 217 Iv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCS 233 (321)
T ss_pred HHHhcCceeCceEEEEe
Confidence 99999999999765543
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.2e-29 Score=212.03 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=139.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
++.++|||+|||+.+++++|+++|..||.|..|.++. ++.++|||||+|.+.++|.+||. |+|..+.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~ 156 (226)
............. .........+|||+|||..+++++|+++|..||.|..+.+..+..+ |||||+|.+.
T Consensus 166 ~~~~~~~~~~~~~-------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAATH-------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhcccc-------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 5433221110000 0001123678999999999999999999999999999999887654 6999999999
Q ss_pred HHHHHHHHHcCCcccccceee
Q 027194 157 DDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~ 177 (226)
++|..|+..|||..+.|+.+.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEE
Confidence 999999999999999996443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.9e-29 Score=201.49 Aligned_cols=177 Identities=25% Similarity=0.362 Sum_probs=138.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (226)
..++|||+|||+.+++++|+.+|..||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999865 35779999999999999999999999999887 6788888
Q ss_pred ccCCCCCCCC--------------CC-CCC-----------C------C-----------------------CCCC----
Q 027194 80 AHGGRGRSSS--------------DR-HSS-----------H------S-----------------------SGRG---- 100 (226)
Q Consensus 80 ~~~~~~~~~~--------------~~-~~~-----------~------~-----------------------~~~~---- 100 (226)
+......... .. ... . . ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7643310000 00 000 0 0 0000
Q ss_pred --------------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHH
Q 027194 101 --------------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (226)
Q Consensus 101 --------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a 162 (226)
.......+.+|||+|||+.+++++|+++|+.||.|..+.|+.+. ..|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00001223479999999999999999999999999999999876 346999999999999999
Q ss_pred HHHcCCcccccceeeeEEEEeee
Q 027194 163 IKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 163 ~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
+..|||..++|+ .|++...
T Consensus 328 i~~lnG~~~~gr----~i~V~~~ 346 (352)
T TIGR01661 328 ILSLNGYTLGNR----VLQVSFK 346 (352)
T ss_pred HHHhCCCEECCe----EEEEEEc
Confidence 999999999995 5555544
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=4e-29 Score=209.03 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=139.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHh--cCCCCCCCceEEEEEccC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--l~~~~~~g~~i~v~~~~~ 82 (226)
|+++|||+|||+++|+++|+++|+.||.|..|.+.+ +++||||+|.+.++|++|+.. +++..+.|++|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999984 479999999999999999986 478899999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHH
Q 027194 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a 162 (226)
........ .. ..........+|+|.||++.+++++|+++|+.||.|..+.++.+...++|||+|.+.++|.+|
T Consensus 78 ~~~~~~~~--~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGN--SD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCC--Cc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 43211110 00 000111233478999999999999999999999999999998887767999999999999999
Q ss_pred HHHcCCcccccceeeeEEEEeeec
Q 027194 163 IKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 163 ~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
++.|||..+.|.. +.+++..++
T Consensus 151 ~~~Lng~~i~~~~--~~l~v~~sk 172 (481)
T TIGR01649 151 KAALNGADIYNGC--CTLKIEYAK 172 (481)
T ss_pred HHHhcCCcccCCc--eEEEEEEec
Confidence 9999999997642 234444443
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.1e-28 Score=204.73 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=142.7
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.++++|||+|||+ .+|+++|+++|+.||.|..|++..+. +|+|||+|.+.++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4778999999998 69999999999999999999997653 79999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC--------CCCCCCC--C--------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC--eeEEEEee
Q 027194 83 GRGRSSSDRH--------SSHSSGR--G--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (226)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~~--~--------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~ 142 (226)
.......... ..+.... . ......++.+|||.|||..+++++|+++|+.||. |..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 5332211100 0010000 0 0011246679999999999999999999999998 77787765
Q ss_pred CC--CCCEEEEEeCCHHHHHHHHHHcCCccccccee--eeEEEEeeecC
Q 027194 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS--RAYVRVREYDH 187 (226)
Q Consensus 143 ~~--~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~--~~~i~~~~~~~ 187 (226)
.. ..++|||+|.+.++|.+|+..|||.++.|+.. ...+++...++
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 43 23699999999999999999999999998642 23455555543
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.6e-28 Score=208.64 Aligned_cols=152 Identities=25% Similarity=0.416 Sum_probs=134.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
+|||+|||+++|+++|+++|..||.|..|+|.. ++.++|||||+|.+.++|++|+..+|+..+.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999966 46788999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHH
Q 027194 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 161 (226)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~ 161 (226)
... .....+|||+|||.++++++|+++|+.||.|..|.+..+.. .|||||+|.+.++|.+
T Consensus 82 ~~~-----------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SLR-----------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccc-----------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 110 11234699999999999999999999999999999987753 4799999999999999
Q ss_pred HHHHcCCccccccee
Q 027194 162 AIKKLDDSEFRNAFS 176 (226)
Q Consensus 162 a~~~l~~~~~~g~~~ 176 (226)
|++.|||..+.|+.+
T Consensus 145 Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 145 AIQKVNGMLLNDKEV 159 (562)
T ss_pred HHHHhcccEecCceE
Confidence 999999999999543
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=8.6e-28 Score=200.66 Aligned_cols=175 Identities=22% Similarity=0.346 Sum_probs=135.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~ 82 (226)
.++|||+|||+++++++|+++|+.||.|.+|+|+. ++.++|||||+|.+.++|++|++.||+..+. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999965 4788999999999999999999999998885 77776655431
Q ss_pred CCC-----CCC-------------------------C----CCCCC-----CC-------------CC------------
Q 027194 83 GRG-----RSS-------------------------S----DRHSS-----HS-------------SG------------ 98 (226)
Q Consensus 83 ~~~-----~~~-------------------------~----~~~~~-----~~-------------~~------------ 98 (226)
... .+. . ..... +. ..
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 000 0 00000 00 00
Q ss_pred ---CCC---CCCCCCcceEEecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcc
Q 027194 99 ---RGR---GVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (226)
Q Consensus 99 ---~~~---~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~ 170 (226)
... ........+|||+||+..+++++|+++|+.| |.|..|.++.+ ||||+|.+.++|.+|++.|||.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 000 0011234689999999999999999999999 99999987754 99999999999999999999999
Q ss_pred cccceeeeEEEEeeecCC
Q 027194 171 FRNAFSRAYVRVREYDHR 188 (226)
Q Consensus 171 ~~g~~~~~~i~~~~~~~~ 188 (226)
|.| ..|++...++.
T Consensus 294 i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 294 LEG----SEIEVTLAKPV 307 (578)
T ss_pred ECC----EEEEEEEccCC
Confidence 999 56777766653
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.4e-27 Score=200.77 Aligned_cols=170 Identities=20% Similarity=0.300 Sum_probs=131.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhc------------CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
+...++|||+|||+.+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..||. |+|..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 344455443 558999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCCCCCCC----------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 027194 71 DGHRLRVELAHGGRGRSSSDRHSSHSSG----------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (226)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~ 140 (226)
.|+.|.|.........+........... ...........+|||+|||..+++++|+++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999765543321111000000000 011112245678999999999999999999999999999998
Q ss_pred eeCC----CCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 141 ~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
+.+. ..|||||+|.+.++|..|+..|||..++|+.+
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 8765 34699999999999999999999999999644
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.9e-27 Score=199.50 Aligned_cols=174 Identities=19% Similarity=0.336 Sum_probs=137.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||..+|+++|+++|..||.|..+.+.. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999865 4788999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCC-----CCCC----CCCCCCCCCcceEEecCCCCCC----------CHHHHHHHHHhcCCeeEEEEe
Q 027194 81 HGGRGRSSSDRHSS-----HSSG----RGRGVSRRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVF 141 (226)
Q Consensus 81 ~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~~~ 141 (226)
.............. .... ........++.+|+|.|+.... ..++|+++|..||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 75443322111110 0000 0011223456789999985321 136789999999999999998
Q ss_pred eCC-------CCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 142 RDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 142 ~~~-------~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
... ..|+|||+|.+.++|.+|+..|||..|.|+.+.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 652 236899999999999999999999999996654
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=184.17 Aligned_cols=174 Identities=24% Similarity=0.320 Sum_probs=138.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (226)
.|-|||++||.++.+++|.-+|+..|.|-+++|+.+ |.++|||||+|.+.+.|++|++.||+..|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 478999999999999999999999999999999765 889999999999999999999999999986 9999998776
Q ss_pred CCCC-----CCC-------------------------CCCCC------------------------------CCCCC---
Q 027194 82 GGRG-----RSS-------------------------SDRHS------------------------------SHSSG--- 98 (226)
Q Consensus 82 ~~~~-----~~~-------------------------~~~~~------------------------------~~~~~--- 98 (226)
.... .+. ..... .+...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 2211 000 00000 00000
Q ss_pred ----CCCCC---CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccc
Q 027194 99 ----RGRGV---SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 99 ----~~~~~---~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
+..++ ....-..|||.||+.++|++.|+++|.+||.|..|+.++| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 00000 1113348999999999999999999999999999988877 999999999999999999999999
Q ss_pred ccceeeeEEEEeeecC
Q 027194 172 RNAFSRAYVRVREYDH 187 (226)
Q Consensus 172 ~g~~~~~~i~~~~~~~ 187 (226)
.|. .|.+..+++
T Consensus 319 dG~----~iEvtLAKP 330 (506)
T KOG0117|consen 319 DGS----PIEVTLAKP 330 (506)
T ss_pred cCc----eEEEEecCC
Confidence 995 555566655
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4.2e-27 Score=201.19 Aligned_cols=174 Identities=21% Similarity=0.337 Sum_probs=140.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCC----CceEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~i~v~ 78 (226)
..++|||+|||+++|+++|+++|..||.|..+.+..+ +.++|||||+|.+.++|.+|++.|+|..+. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4567999999999999999999999999999999654 677899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCC
Q 027194 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTN 155 (226)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~ 155 (226)
++.......... ..................+|||+||+..+++++|+++|+.||.|..+.++.+.. .|+|||+|.+
T Consensus 257 ~a~~k~er~~~~-~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAEL-RRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHHH-HhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 875433211000 000000001112234567899999999999999999999999999999988743 4799999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeE
Q 027194 156 YDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 156 ~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
.++|.+|+..|||..++|+.+...
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEE
Confidence 999999999999999999755443
No 16
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=177.63 Aligned_cols=148 Identities=28% Similarity=0.520 Sum_probs=137.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (226)
-.|||+|||..+++.+|+.+|++||+|.+|.|+ |.||||-.++...|..|+..|+|..|+|..|+|+-++...+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 369999999999999999999999999999999 89999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHc
Q 027194 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l 166 (226)
..++|+|+||.+.++.++|+..|++||.|..|.|+++ |+||.|.-.++|..|++.|
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 4557999999999999999999999999999999988 9999999999999999999
Q ss_pred CCcccccceeeeEEEEee
Q 027194 167 DDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 167 ~~~~~~g~~~~~~i~~~~ 184 (226)
+|.++.|+.+++.+....
T Consensus 133 ~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccccceeeeeeeccc
Confidence 999999998877665543
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=6.9e-27 Score=162.81 Aligned_cols=166 Identities=22% Similarity=0.351 Sum_probs=141.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+...+|||+||+..++++.|+++|-+.|+|..+++.++ ...+|||||+|.++++|+.|++.||...+.|++|.|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 56789999999999999999999999999999999653 567899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCC----CEEEEEeCC
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGSG----TTGIVDYTN 155 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~----~~a~v~f~~ 155 (226)
..... ....+.++||+||.+.+++..|.++|+.||.+.. -.++.++.+ ++|||.|.+
T Consensus 87 s~~~~------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 87 SAHQK------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccccc------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 52111 1223467999999999999999999999998766 466666653 499999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 156 ~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
.+.+.+|+..|||+.+.++.+...+.-+.+..
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999999999999976665555554443
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=2.5e-25 Score=186.12 Aligned_cols=174 Identities=21% Similarity=0.360 Sum_probs=136.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+++|||+|||+.+|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3689999999999999999999999999999999653 5779999999999999999999999999999999999965
Q ss_pred CCCCCCCC-------------CC-----------------C---CC-CCCC----------------C------------
Q 027194 82 GGRGRSSS-------------DR-----------------H---SS-HSSG----------------R------------ 99 (226)
Q Consensus 82 ~~~~~~~~-------------~~-----------------~---~~-~~~~----------------~------------ 99 (226)
........ .. . .. .... .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 32110000 00 0 00 0000 0
Q ss_pred -----CCCC----CCCCcceEEecCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHH
Q 027194 100 -----GRGV----SRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (226)
Q Consensus 100 -----~~~~----~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~ 160 (226)
.... ...+..+|+|.||....+ .++|++.|..||.|..+.+......|++||+|.+.++|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~ 424 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAAL 424 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHH
Confidence 0000 113567888999854443 367999999999999999987777789999999999999
Q ss_pred HHHHHcCCcccccceeee
Q 027194 161 HAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~ 178 (226)
.|++.|||..|+|+.+.+
T Consensus 425 ~A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 425 AAFQALNGRYFGGKMITA 442 (457)
T ss_pred HHHHHhcCcccCCeEEEE
Confidence 999999999999976643
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=180.35 Aligned_cols=155 Identities=23% Similarity=0.417 Sum_probs=133.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCC-CC--CceEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVE 78 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~--g~~i~v~ 78 (226)
+.-.+||+-||..++|.||+++|++||.|.+|.|.+ ++.++|||||.|.+.++|.+|+..|++.. |. ..+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456799999999999999999999999999999976 47899999999999999999999998854 43 4678888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCC
Q 027194 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTN 155 (226)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~ 155 (226)
++....... ....+|||+-|+..++|.+++++|.+||.|++|.|+++.. .|||||+|.+
T Consensus 113 ~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 876443221 2345799999999999999999999999999999999865 4799999999
Q ss_pred HHHHHHHHHHcCCccc-ccceee
Q 027194 156 YDDMKHAIKKLDDSEF-RNAFSR 177 (226)
Q Consensus 156 ~~~A~~a~~~l~~~~~-~g~~~~ 177 (226)
.+.|..|++.|||.+- .|+...
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCc
Confidence 9999999999999764 565443
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.4e-26 Score=167.34 Aligned_cols=161 Identities=22% Similarity=0.379 Sum_probs=140.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
...+.|.|.-||..+|+++|+.+|...|+|++|++.. +|++.||+||.|.++++|++|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4566788999999999999999999999999999966 5899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~ 156 (226)
.+... ...+.+|||.+||..++..+|.++|++||.|.--+|+.+..+ |.+||.|...
T Consensus 119 RPSs~-------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSSD-------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCChh-------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 75332 235567999999999999999999999999988777776654 5899999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
.+|..|++.|||..=-|+.- .|.++.+
T Consensus 180 ~EAe~AIk~lNG~~P~g~te--pItVKFa 206 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTE--PITVKFA 206 (360)
T ss_pred hHHHHHHHhccCCCCCCCCC--CeEEEec
Confidence 99999999999998887643 4444444
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.9e-25 Score=160.48 Aligned_cols=176 Identities=23% Similarity=0.350 Sum_probs=141.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe---cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEEc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 80 (226)
.-.|||.+||+.+|..+|+++|++||.|..-++. .++.++|.+||.|....+|+.|+..|||..-.| .+|.|.++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3469999999999999999999999999877773 368999999999999999999999999988875 57999999
Q ss_pred cCCCCCCCCCC--------CCCCCCC-----------------------C-------------CCCCCCCCcceEEecCC
Q 027194 81 HGGRGRSSSDR--------HSSHSSG-----------------------R-------------GRGVSRRSEYRVLVTGL 116 (226)
Q Consensus 81 ~~~~~~~~~~~--------~~~~~~~-----------------------~-------------~~~~~~~~~~~l~v~nl 116 (226)
..+........ ...+.++ . ........+++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 85533111000 0000000 0 00112235789999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 117 ~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.++.++..|+++|..||.|..++|++|.++ ||+||.|.+.++|.-|+..|||..++++.++.-.+
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 999999999999999999999999998764 69999999999999999999999999987765444
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.5e-25 Score=176.30 Aligned_cols=177 Identities=21% Similarity=0.342 Sum_probs=144.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.-||||++||++++.++|.++|+.+|+|..+.+... +..+||+||.|.-.++++.|+...++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999999764 35689999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEE
Q 027194 83 GRGRSSSDRHSSHSSGR-------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVD 152 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~ 152 (226)
................. ...-...+-+.|+|.|||+.+...+|+.+|+.||.|..+.|+....+ |||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 54433111111111100 01111234789999999999999999999999999999999876654 599999
Q ss_pred eCCHHHHHHHHHHcCCcccccceeeeEEEEeeec
Q 027194 153 YTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 153 f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
|....+|..|++.+|+..|.| +.|.++++=
T Consensus 165 fk~~~dA~~Al~~~N~~~i~g----R~VAVDWAV 194 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDG----RPVAVDWAV 194 (678)
T ss_pred EeeHHHHHHHHHhccCceecC----ceeEEeeec
Confidence 999999999999999999999 566666553
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.1e-24 Score=169.98 Aligned_cols=175 Identities=21% Similarity=0.362 Sum_probs=136.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe--cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+...|.|+|||+.+.+.+|..+|+.||.|..|.|. .+|.--|||||+|....+|..|++.+|+..|.|++|.|.|+.
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 356789999999999999999999999999999994 466667999999999999999999999999999999999998
Q ss_pred CCCCCCCCC----------------------C-------------CCCC--CC-----------------------CCC-
Q 027194 82 GGRGRSSSD----------------------R-------------HSSH--SS-----------------------GRG- 100 (226)
Q Consensus 82 ~~~~~~~~~----------------------~-------------~~~~--~~-----------------------~~~- 100 (226)
+........ . .... .. .+.
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 443211100 0 0000 00 000
Q ss_pred ----C------CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHc
Q 027194 101 ----R------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 101 ----~------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l 166 (226)
. .....-+.+|||.|||+++++++|.+.|+.||.|.++.++.++.+ |.|||.|.+..+|..||...
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0 000112469999999999999999999999999999999888765 58999999999999999965
Q ss_pred -----CC-cccccceeee
Q 027194 167 -----DD-SEFRNAFSRA 178 (226)
Q Consensus 167 -----~~-~~~~g~~~~~ 178 (226)
.| ..+.|+.+..
T Consensus 355 spa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKV 372 (678)
T ss_pred CccCCCceEEEeccEEee
Confidence 23 5556654443
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=157.93 Aligned_cols=170 Identities=37% Similarity=0.632 Sum_probs=136.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (226)
..|||++||+.+.+.+|..||..||.+..+.+. .||+||+|++..+|..|+.-+|+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 479999999999999999999999999999997 799999999999999999999999999999999998753322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHH
Q 027194 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~ 165 (226)
.+....+...+ ......+..+.+.++|.+++..+.|++|.+.|..+|.+.+... ..+++||+|.+.++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchh
Confidence 21111111111 1223344567889999999999999999999999999855444 334899999999999999999
Q ss_pred cCCcccccceeeeEEEEeee
Q 027194 166 LDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 166 l~~~~~~g~~~~~~i~~~~~ 185 (226)
|+|..+.++.+..+..+...
T Consensus 153 l~~~~~~~~~l~~~~~~~d~ 172 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKNSRDR 172 (216)
T ss_pred ccchhhcCceeeecccCcch
Confidence 99999999776664433333
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.2e-23 Score=164.42 Aligned_cols=142 Identities=26% Similarity=0.386 Sum_probs=128.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (226)
.+|||+ +++|+..|.++|.+.|+|.++++..+-.+.|||||.|.++++|.+||..+|...+.|++|.+-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 478998 9999999999999999999999954323899999999999999999999999999999999999864332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--CEEEEEeCCHHHHHHHHH
Q 027194 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIK 164 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~A~~a~~ 164 (226)
.+||.||+..++...|.++|+.||.|..|++..+.++ || ||+|.+.++|.+|+.
T Consensus 78 -----------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 78 -----------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred -----------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 1999999999999999999999999999999988765 57 999999999999999
Q ss_pred HcCCccccccee
Q 027194 165 KLDDSEFRNAFS 176 (226)
Q Consensus 165 ~l~~~~~~g~~~ 176 (226)
.+||..+.|+.+
T Consensus 134 ~~ng~ll~~kki 145 (369)
T KOG0123|consen 134 KLNGMLLNGKKI 145 (369)
T ss_pred HhcCcccCCCee
Confidence 999999999643
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=7.2e-24 Score=162.63 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=136.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.|.|||+.|.+.+-++.|+..|.+||+|++|.+.+ +++.||||||+|+-++.|+.|++.|||..++|+.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999966 478899999999999999999999999999999999974321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHH
Q 027194 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDD 158 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~ 158 (226)
-+... .--..-+.....-..+||..+..++++++|+..|+.||.|.+|.+.+++.+ ||+|++|.+...
T Consensus 193 mpQAQ--------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 193 MPQAQ--------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred Ccccc--------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 11000 000000011123457999999999999999999999999999999988754 599999999999
Q ss_pred HHHHHHHcCCccccccee
Q 027194 159 MKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 159 A~~a~~~l~~~~~~g~~~ 176 (226)
...|+..||-..++|..+
T Consensus 265 ~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYL 282 (544)
T ss_pred hHHHhhhcchhhcccceE
Confidence 999999999999999543
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=166.30 Aligned_cols=161 Identities=22% Similarity=0.392 Sum_probs=134.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CC----CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
++|||.||++++|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|+.++|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999998833 33 34599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~ 156 (226)
...+.... +..-......+.|+|.|||+..+..+++++|..||.+..|.++... ..|||||+|-++
T Consensus 596 ~~k~~~~~----------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 596 ENKPASTV----------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred cCcccccc----------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 72111100 0111122336789999999999999999999999999999998662 246899999999
Q ss_pred HHHHHHHHHcCCcccccceee
Q 027194 157 DDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.+|..|+.+|.+..+.|+.+.
T Consensus 666 ~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred HHHHHHHHhhcccceechhhh
Confidence 999999999999999996543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.6e-21 Score=152.45 Aligned_cols=180 Identities=24% Similarity=0.346 Sum_probs=143.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCC-CC--CceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~--g~~i~v~~ 79 (226)
.++.|||+.|++.+|+.+|+++|.+||.|++|.|.+ ++.++|||||.|.+.+.|..|++.|||.. +. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999977 47899999999999999999999999954 43 57899999
Q ss_pred ccCCCCCCC-----------------------------------------------------------------------
Q 027194 80 AHGGRGRSS----------------------------------------------------------------------- 88 (226)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (226)
+...+....
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 881111000
Q ss_pred ----------CC---------------CC----CCCCCC-----------------------------------------
Q 027194 89 ----------SD---------------RH----SSHSSG----------------------------------------- 98 (226)
Q Consensus 89 ----------~~---------------~~----~~~~~~----------------------------------------- 98 (226)
+. .. ..+.+.
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 00 00 000000
Q ss_pred ----------------------------------------------------CCCCCCCCCcceEEecCCCCCCCHHHHH
Q 027194 99 ----------------------------------------------------RGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (226)
Q Consensus 99 ----------------------------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (226)
...+...+.+.++||.+||.++-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 0001111257799999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCCCC----EEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 127 DHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 127 ~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..|..||.|...+++.++.++ |+||.|++..+|..|+..|||..++.+.++...+.+.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999998876 8999999999999999999999999988766555443
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=4.4e-20 Score=155.01 Aligned_cols=78 Identities=24% Similarity=0.491 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++|||+|||+++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+..||+..++|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999663 5789999999999999999999999999999999999877
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=2.7e-21 Score=155.52 Aligned_cols=173 Identities=22% Similarity=0.352 Sum_probs=132.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
|...|||+||.+.+++++|+.+|++||.|..|.+.. +|.++||+||+|.+.++|.+|++.|||..+.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 444599999999999999999999999999999954 58999999999999999999999999999999999997665
Q ss_pred CCCCCCCCC-----------CCCCCCCC-------------------------------------C-----CCCCCC---
Q 027194 82 GGRGRSSSD-----------RHSSHSSG-------------------------------------R-----GRGVSR--- 105 (226)
Q Consensus 82 ~~~~~~~~~-----------~~~~~~~~-------------------------------------~-----~~~~~~--- 105 (226)
......... ........ . ....+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 332222110 00000000 0 011122
Q ss_pred ----CCcceEEecCCCC-------CCC---HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccc
Q 027194 106 ----RSEYRVLVTGLPS-------SAS---WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 106 ----~~~~~l~v~nl~~-------~~~---~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
.++.|+.+.|+=. +|. .+++.+.|..||+|..|.|.+... |+.||.|.+.+.|..|+..|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 4555677777622 111 267888899999999998877766 8999999999999999999999999
Q ss_pred ccceeee
Q 027194 172 RNAFSRA 178 (226)
Q Consensus 172 ~g~~~~~ 178 (226)
.|+.+..
T Consensus 516 ~gr~Ita 522 (549)
T KOG0147|consen 516 AGRMITA 522 (549)
T ss_pred ccceeEE
Confidence 9988763
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=2.4e-20 Score=135.14 Aligned_cols=171 Identities=22% Similarity=0.328 Sum_probs=139.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHH----HhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 1 MSSRASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
|+-+++.||||.||+..+..++|+. +|+.||.|.+|...++.+.+|.|||.|.+.+.|-.|+..|+|..+.|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4557888999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCC------------------CCCCCCC------------CC-CCCCCCcceEEecCCCCCCCHHHH
Q 027194 77 VELAHGGRGRSSSDRH------------------SSHSSGR------------GR-GVSRRSEYRVLVTGLPSSASWQDL 125 (226)
Q Consensus 77 v~~~~~~~~~~~~~~~------------------~~~~~~~------------~~-~~~~~~~~~l~v~nl~~~~~~~~l 125 (226)
+.+|............ ......+ .. .....+...+|+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999854331111000 0000000 00 222456779999999999999999
Q ss_pred HHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 126 ~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
..+|.+|.....+.++.... +.|||+|.+...|..|...+.|..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999988887765433 58999999999999999998888776
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.1e-21 Score=141.82 Aligned_cols=177 Identities=21% Similarity=0.324 Sum_probs=138.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCC-CCCC--ceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGY-DFDG--HRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~-~~~g--~~i~v~~ 79 (226)
..+.|||+.|.+.-+|+|++.+|..||.|.+|.+.. +|.+||+|||.|.+..+|+.|+..|+|. .+.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999965 7899999999999999999999999983 4444 5688888
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 027194 80 AHGGRG-------------------------------------------------------------------------- 85 (226)
Q Consensus 80 ~~~~~~-------------------------------------------------------------------------- 85 (226)
+.-.+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 770000
Q ss_pred --CCCCCC--------------CC-----C-----------------CCCC-----------------------------
Q 027194 86 --RSSSDR--------------HS-----S-----------------HSSG----------------------------- 98 (226)
Q Consensus 86 --~~~~~~--------------~~-----~-----------------~~~~----------------------------- 98 (226)
.+.... .. . +..+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000000 00 0 0000
Q ss_pred ------------------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCCH
Q 027194 99 ------------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNY 156 (226)
Q Consensus 99 ------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~ 156 (226)
.......+.+|+|||.-||.++.+.||.++|-.||.|...+|+.|..+. |+||.|.++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000112378999999999999999999999999999999998887654 899999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEE
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
..|+.|+..|||.+|+=+.++..++
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhc
Confidence 9999999999999999876655443
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.2e-20 Score=151.42 Aligned_cols=158 Identities=25% Similarity=0.405 Sum_probs=134.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
....|||.||+++++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|++|+..+||..+.|+.|.|......
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 3444999999999999999999999999999999654 348999 99999999999999999999999999999887643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMK 160 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~ 160 (226)
........ . ....-+.+++.|++...+++.|.++|+.+|.|..+.++.+.. .+|+||+|.++++|.
T Consensus 154 ~er~~~~~----------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 154 EEREAPLG----------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred hhhccccc----------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHH
Confidence 33221111 1 223455689999999999999999999999999999988654 459999999999999
Q ss_pred HHHHHcCCcccccc
Q 027194 161 HAIKKLDDSEFRNA 174 (226)
Q Consensus 161 ~a~~~l~~~~~~g~ 174 (226)
.|+..||+..+.+.
T Consensus 223 ~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 223 KAVETLNGKIFGDK 236 (369)
T ss_pred HHHHhccCCcCCcc
Confidence 99999999999874
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=3.2e-21 Score=155.12 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=137.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+++|+--|+..+++.+|.+||+.+|.|.+|.++. ++.++|.|||+|.|.+.+..|+. |.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 356788888888899999999999999999999955 46889999999999999999997 99999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~ 157 (226)
...+... .........+ ...+-..|+|+||..++++++|+.+|+.||.|..+.+..+. ..||+|++|.+.+
T Consensus 257 aeknr~a-~~s~a~~~k~----~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 257 AEKNRAA-NASPALQGKG----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHH-hccccccccc----cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 5554311 1111111110 11122228999999999999999999999999999998885 3469999999999
Q ss_pred HHHHHHHHcCCcccccceeee
Q 027194 158 DMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 158 ~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+|.+|+..|||.++.|+.+++
T Consensus 332 ~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred HHHHHHHHhccceecCceEEE
Confidence 999999999999999977753
No 35
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=130.63 Aligned_cols=169 Identities=23% Similarity=0.369 Sum_probs=131.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC----CceEEEEEcCHHHHHHHHHhcCCCCCC---CceEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRV 77 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v 77 (226)
.-+||||.+||-++-..+|+.+|..|-..+.+.+..+++. +.+|||.|.+...|..|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999988888888666443 479999999999999999999999997 889999
Q ss_pred EEccCCCCCCCCCCCCCCCCC---------------------------------C------C------------------
Q 027194 78 ELAHGGRGRSSSDRHSSHSSG---------------------------------R------G------------------ 100 (226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---------------------------------~------~------------------ 100 (226)
++++...+............. . .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998854432221110000000 0 0
Q ss_pred ----------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcc
Q 027194 101 ----------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (226)
Q Consensus 101 ----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~ 170 (226)
.........+|||.||..++++++|+.+|..|......++.....--.||++|.+.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000013458999999999999999999999998877777554443489999999999999999999988
Q ss_pred ccc
Q 027194 171 FRN 173 (226)
Q Consensus 171 ~~g 173 (226)
+-.
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.3e-20 Score=136.56 Aligned_cols=139 Identities=24% Similarity=0.390 Sum_probs=114.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
|.+...++|||+||+.++|++-|..||...|.|..+++..+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45678899999999999999999999999999999999854 3556665
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~ 156 (226)
.....++... ......+||+.|...++-+.|++.|..||+|..++|++|.++ ||+||.|.+.
T Consensus 49 ~~p~nQsk~t--------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSKPT--------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCCCc--------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 4332221111 112346999999999999999999999999999999998765 5999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeecCCC
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 189 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~~ 189 (226)
++|+.|+..|||++|++ +.|+..++.+.-
T Consensus 115 ~dAEnAI~~MnGqWlG~----R~IRTNWATRKp 143 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGR----RTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHHhCCeeecc----ceeeccccccCc
Confidence 99999999999999999 677777776544
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-19 Score=141.20 Aligned_cols=167 Identities=19% Similarity=0.347 Sum_probs=139.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
+....++|||++|+++++++.|+..|..||.|.+|.++. ++.++||+||+|.+++.+.++|. ...+.++|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 345789999999999999999999999999999999976 47889999999999999999988 67788999999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeC
Q 027194 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYT 154 (226)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~ 154 (226)
.+.+...+...... .....+||++||..+++++|++.|.+||.|..+.++.+... +|+||.|.
T Consensus 81 ~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 88654433222211 14568999999999999999999999999999888877654 59999999
Q ss_pred CHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 155 NYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 155 ~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
+.+.+.+++. .+-..+.|+.+.++..+.
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred cccccceecc-cceeeecCceeeEeeccc
Confidence 9999999888 788888887665544443
No 38
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.82 E-value=2.5e-18 Score=131.33 Aligned_cols=178 Identities=21% Similarity=0.266 Sum_probs=137.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
-+..|||.|||.++|.+++.++|..||.|. .|+++. .|..+|-|.|.|-..+++..|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456799999999999999999999999774 356644 5888999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCcceEEecCCCC----CCC-------HHH
Q 027194 75 LRVELAHGGRGRSSSDRHSS-------------------HSSGRGRGVSRRSEYRVLVTGLPS----SAS-------WQD 124 (226)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~v~nl~~----~~~-------~~~ 124 (226)
|.|+.|+...+......... +........-....++|.+.|+=. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99999885443221111000 000000111223566888888732 112 366
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 125 l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
|.+.+..||.|..+.|......|.+.|.|.+.++|..|++.|+|.+|+|+.+.+.|..
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 7788999999999999988888999999999999999999999999999777666544
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6.7e-19 Score=123.78 Aligned_cols=82 Identities=26% Similarity=0.510 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
..+++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|+.|++.||+..|.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999965 4688999999999999999999999999999999999998
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 40
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=9.9e-19 Score=121.53 Aligned_cols=80 Identities=49% Similarity=0.817 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.-.+.|||+||+..+++.||...|..||++..|+|-. ...|||||||+++.+|..|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999999965 44899999999999999999999999999999999999765
Q ss_pred CC
Q 027194 84 RG 85 (226)
Q Consensus 84 ~~ 85 (226)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.78 E-value=2.7e-17 Score=128.28 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=136.6
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 6 ~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
+++|.|.||.+ .+|++-|..+|..||+|..|+|...+ +-.|.|+|.|...|+.|++.|+|..+.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 68899999955 59999999999999999999996543 4799999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC------CCCCC----------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCE
Q 027194 85 GRSSSDRHSS------HSSGR----------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (226)
Q Consensus 85 ~~~~~~~~~~------~~~~~----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 148 (226)
.+.+.+.... +.... .+...-++..++++.|+|..+++|+|++.|...|.......+-.+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 6555432211 11110 1111224677999999999999999999999999776665555555569
Q ss_pred EEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 149 a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
|++++.+.++|..|+-.+|+..+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999999875
No 42
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.77 E-value=3.6e-19 Score=137.82 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=124.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC------CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
.....|.|.||.+.+|.++++.||..+|.|.++.|+.+ +.....|||.|.|...+..|.. |.++.|-|+.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 44568999999999999999999999999999999663 2345799999999999999988 7777777888777
Q ss_pred EEccCCCCCCC-----------------------CCCCCCCCCCCCC----CCCCC----------CcceEEecCCCCCC
Q 027194 78 ELAHGGRGRSS-----------------------SDRHSSHSSGRGR----GVSRR----------SEYRVLVTGLPSSA 120 (226)
Q Consensus 78 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~----~~~~~----------~~~~l~v~nl~~~~ 120 (226)
........+.. ...+....+.... .++.+ -..+++|.+|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 66543222111 0000000000000 00000 12468899999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
...++.+.|..+|.|.+..+.......+|.+.|........|+. ++|..+.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999999999988887777789999999999999988 6777664
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=131.75 Aligned_cols=167 Identities=20% Similarity=0.270 Sum_probs=126.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec-CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.....|.+++||+++|++||.++|+.+ .|..+.+.. +++..|-|||+|.+++++++|++ .+-..+..+.|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 345678899999999999999999988 677777755 59999999999999999999999 888889999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE-EEEe---eCCCCCEEEEEeCCHHH
Q 027194 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVF---RDGSGTTGIVDYTNYDD 158 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~---~~~~~~~a~v~f~~~~~ 158 (226)
....-..... ......+...|.+.+||+.|++++|.++|+-.-.|.. +.++ ....++.|||+|++.+.
T Consensus 86 ~e~d~~~~~~--------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 86 AEADWVMRPG--------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccccccCC--------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 4431110000 0011145668999999999999999999997665555 2233 33455789999999999
Q ss_pred HHHHHHHcCCcccccceeeeEEEEeee
Q 027194 159 MKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 159 A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
|+.|+.. |...|+- +||.+-..
T Consensus 158 ae~Al~r-hre~iGh----RYIEvF~S 179 (510)
T KOG4211|consen 158 AEIALGR-HRENIGH----RYIEVFRS 179 (510)
T ss_pred HHHHHHH-HHHhhcc----ceEEeehh
Confidence 9999984 5555555 56665543
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=138.13 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=137.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
+..+.|+|+|||..+..++|...|..||.|..+.+... -..|+|+|.++.+|.+|+..|+...+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45689999999999999999999999999999955421 236999999999999999999999999999999988754
Q ss_pred CCCCC--CCC----C-CC-----------CCCCCCCCC------------CC-CCcceEEecCCCCCCCHHHHHHHHHhc
Q 027194 84 RGRSS--SDR----H-SS-----------HSSGRGRGV------------SR-RSEYRVLVTGLPSSASWQDLKDHMRRA 132 (226)
Q Consensus 84 ~~~~~--~~~----~-~~-----------~~~~~~~~~------------~~-~~~~~l~v~nl~~~~~~~~l~~~f~~~ 132 (226)
..... ... . .. ....-..+. .. ...+.|||.||++..+.+.|...|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 44311 000 0 00 000000000 01 122339999999999999999999999
Q ss_pred CCeeEEEEeeCCCC-------CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 133 g~v~~~~~~~~~~~-------~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
|.|..+.|...+.. |||||+|.++++|+.|++.|+|..+.|+.+...+.-
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988776655 799999999999999999999999999877665554
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.3e-17 Score=115.96 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=64.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
..+.|||+||+..+++.+|...|..||.+..|.|... ..|||||+|+++.+|..|+..|+|..|.|..+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 3668999999999999999999999999999988884 45799999999999999999999999999544333
No 46
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=122.79 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=74.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 85 (226)
.++|||+|||+.+|+++|+++|+.||.|..|.|..++..+|||||+|.++++|..|+. |||..|.|+.|.|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 6899999999999999999999999999999998887778999999999999999997 999999999999999876543
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=1.2e-17 Score=103.50 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
|||+|||+++|+++|+++|..||.|..+.+.. .+..+++|||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467789999999999999999999999999999885
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=5.5e-17 Score=136.27 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=100.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++|||+|||.++|+++|+++|+.| |.|+.|.+. ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999887 67999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCC---------CCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCee
Q 027194 83 GRGRSSSDRHSS---------HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (226)
Q Consensus 83 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 136 (226)
............ ...............++++.|+++..+++-+.++|...|.|.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 543211000000 000011122234577899999999999999999999888654
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=8.8e-16 Score=120.94 Aligned_cols=171 Identities=23% Similarity=0.331 Sum_probs=131.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
-.+.+||+|||+++-..+|++||. ..|.|..|.+..| ++++|+|.|||+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456799999999999999999998 4589999999765 7899999999999999999999999999999999997554
Q ss_pred CCCCCC---------------------CC------------CCCC---------------CCC----CC-----------
Q 027194 82 GGRGRS---------------------SS------------DRHS---------------SHS----SG----------- 98 (226)
Q Consensus 82 ~~~~~~---------------------~~------------~~~~---------------~~~----~~----------- 98 (226)
...... +. .+.. .+. ..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 210000 00 0000 000 00
Q ss_pred ---CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 99 ---RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 99 ---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
+.....++-...+||.||.+.+....|.+.|...|.|+.+.+-.++. .++|.++|.++-+|..|+..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00111233455789999999999999999999999999988876654 369999999999999999999986555
Q ss_pred cce
Q 027194 173 NAF 175 (226)
Q Consensus 173 g~~ 175 (226)
..+
T Consensus 283 ~~~ 285 (608)
T KOG4212|consen 283 DRR 285 (608)
T ss_pred ccc
Confidence 543
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.70 E-value=1.9e-15 Score=116.84 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=137.4
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
-+.++++|.+|.-. ++-+.|.++|+.||+|..|+++++. .|.|+||+.|+.+.+.|+..||+..+.|.+|.|.++++
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46789999999664 7788899999999999999999876 68999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCC--------CCCCC--------C--CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeC
Q 027194 83 GRGRSSSDRHS--------SHSSG--------R--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 143 (226)
Q Consensus 83 ~~~~~~~~~~~--------~~~~~--------~--~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~ 143 (226)
....+...-.. .+... . .......++++|+..|.|..+||+.|.++|...+. ...++++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 54332211100 01110 0 11223358889999999999999999999998763 456777766
Q ss_pred CCCC--EEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 144 GSGT--TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 144 ~~~~--~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
++.. .++++|++.++|..|+.++|..++.+....
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs 478 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGS 478 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCC
Confidence 6544 799999999999999999999999886544
No 51
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.4e-16 Score=117.61 Aligned_cols=89 Identities=34% Similarity=0.563 Sum_probs=80.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
.++|=+||||+-|+.++++..|+..|..||+|+.|.|+. +|+++|||||+|+++-++..|++..+|..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 357889999999999999999999999999999999955 68999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCC
Q 027194 79 LAHGGRGRSSSD 90 (226)
Q Consensus 79 ~~~~~~~~~~~~ 90 (226)
+........+-+
T Consensus 177 vERgRTvkgW~P 188 (335)
T KOG0113|consen 177 VERGRTVKGWLP 188 (335)
T ss_pred eccccccccccc
Confidence 987665554433
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.2e-17 Score=107.21 Aligned_cols=78 Identities=37% Similarity=0.565 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe---cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+.+++|||+||+..+++++|++||+.+|+|..|.|= .+..+=|||||+|.+.++|..||..++|+.+++++|.+.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 578999999999999999999999999999999882 23444699999999999999999999999999999999986
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.69 E-value=4.5e-16 Score=115.21 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
...+|||+||++.+|+++|+++|+.||.|..|.|..++..+++|||+|+++++|..|+. |+|..|.|++|.|.......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999999998888999999999999999997 99999999999999876544
Q ss_pred C
Q 027194 85 G 85 (226)
Q Consensus 85 ~ 85 (226)
.
T Consensus 83 ~ 83 (243)
T PLN03121 83 D 83 (243)
T ss_pred c
Confidence 3
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=100.11 Aligned_cols=78 Identities=37% Similarity=0.525 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
-++.|||+|||+.+|.+++.++|..||.|..|++-.+..-+|.|||.|++..+|.+|+..|+|..+.++.+.|-+-++
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 467899999999999999999999999999999977777799999999999999999999999999999999987653
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=4.8e-16 Score=121.37 Aligned_cols=176 Identities=17% Similarity=0.247 Sum_probs=132.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCC--CCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~ 80 (226)
..++++|.++|||+++++++|..++.+||.|..+.+. +.+..|||+|.|+++|...+....... +.|++|.|+++
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l---kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML---KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeee---ccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 3589999999999999999999999999999999887 446799999999999888665544433 56899999887
Q ss_pred cCCCCCCCCCCC------------------CCCCC-CC--CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEE
Q 027194 81 HGGRGRSSSDRH------------------SSHSS-GR--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 139 (226)
Q Consensus 81 ~~~~~~~~~~~~------------------~~~~~-~~--~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~ 139 (226)
....-....... ..... .. +....+.+--.++|.|+-+.++-+.|.++|+.||.|..+.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 632211111100 00000 00 1111222334677899999999999999999999999988
Q ss_pred EeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 140 ~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
-+...++.-|+|+|.+++.|..|...|.|.-+.+..+..+|.
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 887777667999999999999999999999998655444443
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=5.1e-16 Score=110.87 Aligned_cols=79 Identities=34% Similarity=0.568 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
....+|.|-||-+.+|.++|+.+|+.||.|-+|.|.. +.+++|||||.|.+..+|+.|++.|+|..++|+.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3567899999999999999999999999999999954 5789999999999999999999999999999999999988
Q ss_pred cC
Q 027194 81 HG 82 (226)
Q Consensus 81 ~~ 82 (226)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 64
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.8e-16 Score=113.74 Aligned_cols=80 Identities=39% Similarity=0.629 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
..+++|.|.||+.++++++|.+||.+||.|..|.|.+ +|.++|||||.|.+.++|.+|+..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3578899999999999999999999999999999944 7899999999999999999999999999999999999999
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 753
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=117.15 Aligned_cols=140 Identities=30% Similarity=0.518 Sum_probs=109.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.++|||+|||+.+|+++|.++|..||.|..+.+.. ++.++|+|||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998855 479999999999999999999999999999999999999753
Q ss_pred --CCCCCCCC---CCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 027194 83 --GRGRSSSD---RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 145 (226)
Q Consensus 83 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 145 (226)
........ ....................+++.+++..++...+...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111110 0000001112233445677899999999999999999999999986666654443
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=3.3e-16 Score=97.06 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
|||+|||+++++++|.++|..+|.|..+.+... +..+++|||+|.++++|..|+..+++..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999553 56789999999999999999999999999999874
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.2e-15 Score=124.40 Aligned_cols=178 Identities=20% Similarity=0.319 Sum_probs=134.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
...+.+||++||...++.++.++...||++....+.. ++.++||||.+|.++..+..|+..|||..+.+..|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3567899999999999999999999999999999865 4789999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCC---CCCCCC--CCCCCCCcceEEecCCC--CCC-CH-------HHHHHHHHhcCCeeEEEEeeC-C
Q 027194 81 HGGRGRSSSDRHSS---HSSGRG--RGVSRRSEYRVLVTGLP--SSA-SW-------QDLKDHMRRAGDVCFSQVFRD-G 144 (226)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~l~v~nl~--~~~-~~-------~~l~~~f~~~g~v~~~~~~~~-~ 144 (226)
-......-...+.. ...-.. .+....+...|.+.|+= .++ .+ ++++..|..||.|..|.+... .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 76555443333310 000011 12233445555555531 111 11 446666778999999999877 2
Q ss_pred C------CCEEEEEeCCHHHHHHHHHHcCCcccccceee-eEEE
Q 027194 145 S------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVR 181 (226)
Q Consensus 145 ~------~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~-~~i~ 181 (226)
. .|..||+|.+.+++++|.+.|+|..|.|+.+. .|+.
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 2 25789999999999999999999999998764 4443
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=108.87 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
++...-..|.|.||.+.++.++|..+|+.||.|.+|.|..+..+ |||||.|....+|+.|+++|+|..++|+.+.+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 33445568999999999999999999999999999999988754 69999999999999999999999999976643
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=9.5e-15 Score=102.77 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=69.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....++|||.|||+.+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|..|++.||+..+.|+ .+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr----~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR----HI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE----EE
Confidence 34667899999999999999999999999999999987754 46999999999999999999999999995 55
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
++.....
T Consensus 107 ~V~~a~~ 113 (144)
T PLN03134 107 RVNPAND 113 (144)
T ss_pred EEEeCCc
Confidence 5555544
No 63
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=101.71 Aligned_cols=78 Identities=27% Similarity=0.486 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe---cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
...|||+++.+.+|+++|.+.|..||+|+.|.+. .+|..||||+|+|++.+.|++|+..+||..+.|+.|.|.|+--
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4579999999999999999999999999999994 4789999999999999999999999999999999999999864
Q ss_pred C
Q 027194 83 G 83 (226)
Q Consensus 83 ~ 83 (226)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 64
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=8e-15 Score=117.29 Aligned_cols=81 Identities=32% Similarity=0.529 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (226)
.+++|||+|||+.+|+++|+++|+.||.|..+.|.. ++.++|+|||+|.+.++|++|++.||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999865 46788999999999999999999999999876 7899998
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 875443
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=5.5e-14 Score=108.69 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
=+.|||..+.++++++||+..|+.||+|..|.+-. ....+||+||+|.+..+...|+..||=..++|+.|.|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 46899999999999999999999999999999954 24669999999999999999999999999999999997665
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.9e-16 Score=117.68 Aligned_cols=83 Identities=23% Similarity=0.369 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.|.++|||+.|.|.+|+++|..+|+.||.|..|.|+. +|.+..||||+|++.++|++|+..|++..|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 6899999999999999999999999999999999954 6899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
+.-...
T Consensus 317 QSVsk~ 322 (479)
T KOG0415|consen 317 QSVSKV 322 (479)
T ss_pred hhhhhh
Confidence 865553
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=9.2e-15 Score=90.52 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
+|+|+|||+.+++++|+++|..||.|..+.+..+ +.++++|||+|.+.++|+.|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999998654 566799999999999999999999999999999887
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=6.2e-15 Score=117.98 Aligned_cols=78 Identities=19% Similarity=0.393 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCH--HHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+....+|||+||++.+|+++|..+|..||.|..|.|.++.. +|||||+|.+. .++.+|+..|||..+.|+.|+|..+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 45678999999999999999999999999999999976433 99999999987 7899999999999999999999988
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
+
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 7
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=5.5e-15 Score=112.50 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec-CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
...++|+|.|||+..-+-||+..|..||.|.+|.|+. +-.+|||+||+|+++++|.+|-+.|||..+.||+|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4568999999999999999999999999999999965 567899999999999999999999999999999999999875
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 533
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.5e-15 Score=107.82 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=68.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
-++|||+||+++++.+.|+++|++||+|.+..|+. ++++|||+||+|.|.++|.+|++ =.+-.|+||+..|.++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 36899999999999999999999999999888854 58999999999999999999999 456778999999999875
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=2e-13 Score=107.83 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.....+||.||...+....|.+.|.--|.|..|.+ .+.+.++|+|.++|..+-.|-.|+..+++.-+.+++..+.+
T Consensus 213 Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 213 PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 44578999999999999999999999999988887 44578899999999999999999999998777777777665
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.2e-16 Score=109.75 Aligned_cols=83 Identities=27% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+.+--|||+|||+.+|+.||...|++||.|..|.++. ||+++||||+.|++..+...|+..|||..+.|+.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567899999999999999999999999999999965 6899999999999999999999999999999999999987
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
.....+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 655544
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=3.6e-14 Score=87.74 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=60.0
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
|||+|||..+++++|+++|..||.|..+.+..+. ..++|||+|.+.++|..|++.|+|..++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7899999999999999999999999999998852 23599999999999999999999999999644
No 74
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4e-13 Score=108.31 Aligned_cols=166 Identities=21% Similarity=0.295 Sum_probs=115.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-----CCCCc---eEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-----~~~~g---~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
-++.|||++||+++++++|...|..||.+..=.-.+. -..+| |+|+.|+++..++..+..+.- .+..+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 4689999999999999999999999997753322111 13355 999999999999988776533 223333
Q ss_pred EEEccCCCCCCC----CCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCC----CC
Q 027194 77 VELAHGGRGRSS----SDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDGS----GT 147 (226)
Q Consensus 77 v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~----~~ 147 (226)
+..+.+....+. ++......--........+..+|||++||-.++.++|-.+|+ .||.|.++.|..|+. .|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 333322221110 000000000011234456788999999999999999999999 799999999998843 35
Q ss_pred EEEEEeCCHHHHHHHHH----HcCCccccc
Q 027194 148 TGIVDYTNYDDMKHAIK----KLDDSEFRN 173 (226)
Q Consensus 148 ~a~v~f~~~~~A~~a~~----~l~~~~~~g 173 (226)
.|.|+|.+..+..+||. .|+..++..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce
Confidence 79999999999999998 345555544
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.2e-13 Score=85.83 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCC--CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+. ...++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997643 4589999999999999999999999999999998863
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1e-13 Score=85.38 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.9
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 11 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
|+|||..+++++|+++|..||.|..+.+.. ++.++|+|||+|.+.++|..|+..+++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 579999999999999999999999999865 3567899999999999999999999999999999887
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=1.3e-13 Score=81.40 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=51.1
Q ss_pred HHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 23 l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..+.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 599999999999999999999999999999999986
No 78
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.50 E-value=6.7e-13 Score=102.94 Aligned_cols=166 Identities=15% Similarity=0.211 Sum_probs=127.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhc--CCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~~ 81 (226)
+++.+|.|++|-..+++.+|.+-++.||.|..+.+... +..|.|+|++.+.|+.++... +...+.|+...+.++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 57889999999999999999999999999998888633 689999999999999998742 3466778888888875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEE--ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL--VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A 159 (226)
........ .....++..|. |-|--+.+|.+.|..++...|.|..+.|++. +.-.|.|+|.+.+.|
T Consensus 106 sq~i~R~g------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 106 SQCIERPG------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVA 172 (494)
T ss_pred hhhhccCC------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHH
Confidence 43322111 11112333344 4454567899999999999999999998877 444899999999999
Q ss_pred HHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 160 KHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
++|...|||..|.... +.++++.+++
T Consensus 173 qrAk~alNGADIYsGC--CTLKIeyAkP 198 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGC--CTLKIEYAKP 198 (494)
T ss_pred HHHHhhcccccccccc--eeEEEEecCc
Confidence 9999999999998433 3444444433
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=107.18 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=119.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc----CCeeEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKY----GPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
-.|.+++||+++|+.++.++|.+- |.++.|.+ ..+|+..|-|||.|..+++|+.|+. -|...++-+.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 456788999999999999999632 34455555 3378999999999999999999998 4555555555555333
Q ss_pred cCCC----------CCCCCCCCCCCC--CCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC-eeE--EEEeeCC-
Q 027194 81 HGGR----------GRSSSDRHSSHS--SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDG- 144 (226)
Q Consensus 81 ~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~--~~~~~~~- 144 (226)
.... ............ .+....+......+|.+.+||+..+.++|.++|..|.. |.. +.+..+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 2100 000000000000 01112233334668999999999999999999998874 333 4444332
Q ss_pred --CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 145 --SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 145 --~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
..|.|||+|.+.++|..|..+.|++.+++ +||.+-..
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp~ 359 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFPC 359 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEeec
Confidence 34689999999999999999999999877 56666543
No 80
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.2e-14 Score=101.27 Aligned_cols=85 Identities=34% Similarity=0.611 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
...++|||++|..++|+.-|...|-+||.|.+|.+.. +++.+|||||+|+..++|..|+..||+..+.|+.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4578999999999999999999999999999999955 3677899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 027194 81 HGGRGRSS 88 (226)
Q Consensus 81 ~~~~~~~~ 88 (226)
.+......
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 87655433
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.46 E-value=2.8e-13 Score=110.13 Aligned_cols=79 Identities=33% Similarity=0.665 Sum_probs=74.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
+.|||+|||+++++++|..+|...|.|.++++.. +|.++||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 5899999999999999999999999999999999999998855
Q ss_pred CC
Q 027194 84 RG 85 (226)
Q Consensus 84 ~~ 85 (226)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=9.2e-13 Score=99.32 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=63.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
..+|||+|||+.+++++|+++|+.||.|..+.+..+. ..+||||+|.++++|..|+. |+|..+.|+.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEE
Confidence 4579999999999999999999999999999998876 45799999999999999996 9999999965543
No 83
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=100.05 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.....|+|.|||+.+.+-+|+.+|.+||.|.+|.|+.+.. .|||||+|+++++|.+|-++|||..+.| ++|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEEE
Confidence 344567899999999999999999999999999999887654 4799999999999999999999999999 6777
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+..+..
T Consensus 168 Vn~ATa 173 (376)
T KOG0125|consen 168 VNNATA 173 (376)
T ss_pred Eeccch
Confidence 776655
No 84
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=6.8e-13 Score=82.03 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.0
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
|+|+|||+.+++++|+++|..+|.|..+.+..++. .++|||+|.++++|..|+..++|..+.|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 68999999999999999999999999999988764 359999999999999999999999999954
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=87.73 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=65.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
...++.|||.++....+++++.+.|..||.|.++.+..+..+ |||+|+|.+.++|+.|+..|||..+.|..+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 356789999999999999999999999999999998877665 489999999999999999999999999644
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1e-12 Score=104.09 Aligned_cols=77 Identities=31% Similarity=0.557 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 85 (226)
-..|||+||+.++|++.|+++|..||.|..|... +-||||-|.+-++|.+||+.+||+.|.|..|.|.++++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3689999999999999999999999999999877 56999999999999999999999999999999999997655
Q ss_pred CC
Q 027194 86 RS 87 (226)
Q Consensus 86 ~~ 87 (226)
..
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 33
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=98.65 Aligned_cols=77 Identities=42% Similarity=0.697 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
++++++|+|+||.+.++..+|+..|++||+|.+|.+. ++|+||.|.-.++|..|+..|+|+.|.|++++|+++..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3588999999999999999999999999999999999 89999999999999999999999999999999999875
Q ss_pred CC
Q 027194 83 GR 84 (226)
Q Consensus 83 ~~ 84 (226)
..
T Consensus 150 rl 151 (346)
T KOG0109|consen 150 RL 151 (346)
T ss_pred cc
Confidence 43
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=8.3e-12 Score=79.69 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.++.-+..|||.|||+.+|.+++.++|..||.|..+.+=..+. .|.|||.|.+..+|.+|+.+|+|..+.+ +|+.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEE
Confidence 3445567899999999999999999999999999999865554 4799999999999999999999999999 4555
Q ss_pred Eeeec
Q 027194 182 VREYD 186 (226)
Q Consensus 182 ~~~~~ 186 (226)
+-...
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 54443
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=3.6e-12 Score=78.62 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.4
Q ss_pred HHHHHHHhh----hcCCeeEEE-Eec---C--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 20 ~~~l~~~f~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
+++|+++|. .||.|..+. +.. + +.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999985 422 3 778999999999999999999999999999999986
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5.4e-12 Score=103.37 Aligned_cols=172 Identities=21% Similarity=0.321 Sum_probs=133.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc-----------C-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
.....++|+++|+.++++.+..+|..- | .+..+.+. ..+.+||++|.+.+.|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 456789999999999999999999743 2 35566554 558999999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCC----CCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--
Q 027194 72 GHRLRVELAHGGRGRSSSDRHS----SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-- 145 (226)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-- 145 (226)
|+++++.-.......+...... .................++|++||..+++++++++...||.+....++.+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9999887655433332221111 1122222233445677899999999999999999999999988877776654
Q ss_pred --CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 146 --GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 146 --~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
.+|||.+|.++.....|+..|||..++++.+.+.
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 4699999999999999999999999999766543
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=1.3e-11 Score=76.14 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=60.4
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
+|+|.|||..+++++|+++|..||.+..+.+..++ ..++|||+|.+.++|..|+..++|..+.|+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 48999999999999999999999999999888765 34699999999999999999999999988543
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=1.2e-11 Score=91.96 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=62.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+.+|+|.||++.+++++|+++|+.+|.|.+|.+..+... ++|||+|.++++|..|+. |+|..|.++.+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I 73 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRV 73 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceE
Confidence 4578999999999999999999999999999999988544 599999999999999996 99999999654
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=7.8e-12 Score=100.51 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=69.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCH--HHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~--~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
....|||+||++.+++++|...|..||.|..+.|++....|||||+|.+. .++.+|+..|||..+.| +.+++..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEee
Confidence 45689999999999999999999999999999999887788999999987 78999999999999999 5667776
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 655
No 94
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.7e-11 Score=89.14 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....++|.|.||+.++++++|+++|..||.|..+.+..++.+| ||||.|.+.++|.+|+..|||.-++. .-+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEE
Confidence 3456789999999999999999999999999999999998775 99999999999999999999999988 666
Q ss_pred EEeeecCC
Q 027194 181 RVREYDHR 188 (226)
Q Consensus 181 ~~~~~~~~ 188 (226)
++++.+|+
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 77777653
No 95
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=7.4e-12 Score=105.34 Aligned_cols=78 Identities=31% Similarity=0.573 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
.++||||++|+..+++.+|..+|+.||.|.+|.++ ...++|||.+..-.+|.+|+..|++..+.++.|+|.|+....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 47899999999999999999999999999999997 558999999999999999999999999999999999997654
Q ss_pred C
Q 027194 85 G 85 (226)
Q Consensus 85 ~ 85 (226)
.
T Consensus 497 ~ 497 (894)
T KOG0132|consen 497 P 497 (894)
T ss_pred c
Confidence 4
No 96
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.1e-12 Score=83.12 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=69.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
..+++|||+||+.-+++++|.++|+..|.|..+.+=.+.++ |||||+|.+.++|..|++-++|..++. +.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 46789999999999999999999999999998877666554 599999999999999999999999999 5777
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
++++-.
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 787754
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.3e-11 Score=89.57 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
...+-++|||.-|++++++..|+..|..||.|..+.++.+.- .|||||+|.+..+...|.+..+|..|+|+.+.+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 336778999999999999999999999999999999988754 469999999999999999999999999976543
No 98
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=88.09 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc-CCeeEEEE---ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.....++|..+|.-+.+.++..+|.+| |.|..+++ .+||.++|||||+|++++.|.-|-+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345678999999999999999999999 68888888 55899999999999999999999999999999999999998
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7654
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=7.1e-11 Score=72.47 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=57.8
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
|.|||..+++++|+++|..||.|..+.+...+. .++|||+|.+.++|..|+..+++..+.|+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 578999999999999999999999999887765 4699999999999999999999999988543
No 100
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=5.8e-12 Score=107.50 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=127.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+++||++||+..+++.+|+..|..+|.|..|.|... +....||||.|.+...+..|...+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 56899999999999999999999999999999999554 4556799999999999999999999888765555554442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~ 161 (226)
. .....+.+++++|...+....|...|..||.|..+.+..... ||+|.|.+...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 1 123445699999999999999999999999999877755544 99999999999999
Q ss_pred HHHHcCCccccccee
Q 027194 162 AIKKLDDSEFRNAFS 176 (226)
Q Consensus 162 a~~~l~~~~~~g~~~ 176 (226)
|+..|-|..++|...
T Consensus 507 a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPR 521 (975)
T ss_pred hHHHHhcCcCCCCCc
Confidence 999999999998543
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=1.3e-10 Score=71.92 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=61.4
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
+|+|.|||..+++++|.++|..+|.|..+.+..++. .++|+|+|.+.++|..|+..+++..+.|+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 388999999999999999999999999999987764 57999999999999999999999999985443
No 102
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=6.2e-11 Score=83.71 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=68.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
..+.|+|+|||.++.+.+|.++|-+||.|..|.+...+. ..||||+|+++.+|..|+..-+|..++| +.++++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 466899999999999999999999999999988765544 3599999999999999999999999999 46666666
Q ss_pred cCCC
Q 027194 186 DHRR 189 (226)
Q Consensus 186 ~~~~ 189 (226)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 5544
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=5.8e-10 Score=89.82 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=114.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.-+|.|++||+.+|++||.++|+.+-.|.. |.+.. .+.+.|-|||+|++.+.|++|+. -|...|.-+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5678999999999999999999998865555 33333 46778999999999999999999 66777888888886554
Q ss_pred CC---------CCC----CCCC-----CCC-C----------------CCCC----------------------C-----
Q 027194 82 GG---------RGR----SSSD-----RHS-S----------------HSSG----------------------R----- 99 (226)
Q Consensus 82 ~~---------~~~----~~~~-----~~~-~----------------~~~~----------------------~----- 99 (226)
.. ... .+.. +.. . .... .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 10 000 0000 000 0 0000 0
Q ss_pred ------------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEEEeCCHHHHHHHHH
Q 027194 100 ------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIK 164 (226)
Q Consensus 100 ------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~ 164 (226)
........+..++..+||+..++.++..+|...-.+ .+.|...+ .++-|.|+|.|-++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 000000123688899999999999999999876543 45554443 34689999999999999998
Q ss_pred HcCCccccc
Q 027194 165 KLDDSEFRN 173 (226)
Q Consensus 165 ~l~~~~~~g 173 (226)
-++..+..
T Consensus 340 -kd~anm~h 347 (510)
T KOG4211|consen 340 -KDGANMGH 347 (510)
T ss_pred -cCCcccCc
Confidence 36666665
No 104
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=6.9e-11 Score=86.61 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=61.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
.-++|||++|++.+..+.|+..|++||+|+.+.|+.|+++ ||+||+|++.+.|.+|++- -+-.|+|+..-+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 4568999999999999999999999999999999988765 5999999999999999993 4556677544333
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=1.6e-10 Score=67.98 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=45.8
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 125 l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
|.++|++||.|..+.+.... .++|||+|.+.++|..|+..|||..+.|+.+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 67899999999999987776 57999999999999999999999999996543
No 106
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=3.3e-12 Score=100.66 Aligned_cols=151 Identities=23% Similarity=0.407 Sum_probs=120.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC-CCCCCceEEEEEccCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELAHGG 83 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~~~~ 83 (226)
+.+|++||.+.+++.+|..+|... |.-..+.+. .|||||.+.+...|.+|++.++| ..+.|+++.+..+-+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 578999999999999999999854 222223333 69999999999999999999998 5678999999887543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEE-eeCCCCCEEEEEeCCHHHHHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV-FRDGSGTTGIVDYTNYDDMKHA 162 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~~~a~v~f~~~~~A~~a 162 (226)
.. ....+-|.|+|....|+.|..+...||.|..|.. ..+..+...-|+|.+.+.+..|
T Consensus 77 kq---------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 KQ---------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred HH---------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 32 2334779999999999999999999999998754 4444444566899999999999
Q ss_pred HHHcCCcccccceee-eEEEEe
Q 027194 163 IKKLDDSEFRNAFSR-AYVRVR 183 (226)
Q Consensus 163 ~~~l~~~~~~g~~~~-~~i~~~ 183 (226)
+.+++|..+.+...+ .||...
T Consensus 136 i~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 136 IHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHhhcchHhhhhhhhcccCchh
Confidence 999999999986653 555444
No 107
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=4.9e-11 Score=84.01 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+...+.+|||+||+..++++.|+++|-+.|.|..+.+.++. ..||||++|.+.++|..|++.||...+.|+++..
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 34567789999999999999999999999999999998775 4579999999999999999999999999965543
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=89.99 Aligned_cols=76 Identities=32% Similarity=0.589 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHh-cCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~~~~~~g~~i~v~~~~~ 82 (226)
....+|||++|...+++.+|++.|.+||.|..+.+. ..+++|||+|.+-++|+.|.+. +|...+.|.+|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 567899999999999999999999999999999997 3378999999999999998876 566778999999999877
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.9e-11 Score=89.42 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
+.+.|.|||..||.+.++.+|.+.|-+||.|.+-++.. ++.+|.|+||.|.++.+|+.|+..|||..|+-++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46789999999999999999999999999999988854 579999999999999999999999999999999999988
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
..+.
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 7543
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.3e-12 Score=90.95 Aligned_cols=134 Identities=20% Similarity=0.290 Sum_probs=104.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
...+||||+|+...++++-|.++|-.-|+|..|.|.. ++..| ||||.|+++..+..|++.+||..+.+..+++.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3568999999999999999999999999999999954 45555 99999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDD 158 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~ 158 (226)
...- .-|...++++.+.+.|+..|.+..+.+..+.. ..++++.+...-.
T Consensus 86 G~sh----------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 86 GNSH----------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred CCCc----------------------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 2211 11455677788888888888887777765544 2367777766555
Q ss_pred HHHHHHHc
Q 027194 159 MKHAIKKL 166 (226)
Q Consensus 159 A~~a~~~l 166 (226)
.-.++..-
T Consensus 138 ~P~~~~~y 145 (267)
T KOG4454|consen 138 VPFALDLY 145 (267)
T ss_pred CcHHhhhh
Confidence 55555533
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1e-10 Score=95.43 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=101.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
+-++.+|+|-|||..+++++|..+|+.||+|+.|+. +....|.+||+|.|.-+|+.|++.|++..+.|+.|+......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 357889999999999999999999999999999554 445689999999999999999999999999999999211111
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCC-CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHH
Q 027194 83 GRGRSSSDRHS--SHSSGRGRGVS-RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (226)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A 159 (226)
..........- ....+.....+ .-+...++. .|++..+...+..+++.+|.+.. .-.... ...-++.|.+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~~~~~s~ 226 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEFADNRSY 226 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccch-hhhhhhhhccccch
Confidence 00000000000 00000000000 011112332 27877777666677777776543 111110 01456777777777
Q ss_pred HHHHHHcCCccccc
Q 027194 160 KHAIKKLDDSEFRN 173 (226)
Q Consensus 160 ~~a~~~l~~~~~~g 173 (226)
..+...+ |..+.+
T Consensus 227 a~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 227 AFSEPRG-GFLISN 239 (549)
T ss_pred hhcccCC-ceecCC
Confidence 5554433 454444
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.9e-09 Score=80.21 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=67.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+|...|||..|.+-++.++|.-+|+.||.|..|.|+.+..+| ||||+|.+.++..+|.-+|.+..|..+.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 3578899999999999999999999999999999999999887 99999999999999999999999999433
No 113
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=2.4e-09 Score=80.62 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.-+..|+|.|||..+++++|+++|..||.++.+-+.. .|.+.|.|-|.|...++|..|++.+||..++|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457899999999999999999999999888777754 58899999999999999999999999999999999998877
Q ss_pred CCCCC
Q 027194 82 GGRGR 86 (226)
Q Consensus 82 ~~~~~ 86 (226)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 55443
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.99 E-value=3.1e-09 Score=83.05 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=63.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
..+|||+|||..+++++|.++|..||.+..+.+..+. ..|+|||+|.+.++|..|+..++|..+.|+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 6899999999999999999999999999998887774 346999999999999999999999999996443
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=1.3e-09 Score=88.89 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=68.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+||+|+|+++++++|.++|...|.|..+++..|..+ ||||++|.+.++|..|++.|||.++.| +.+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 78999999999999999999999999999999887655 599999999999999999999999999 4556665
Q ss_pred ecCCCC
Q 027194 185 YDHRRD 190 (226)
Q Consensus 185 ~~~~~~ 190 (226)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 544333
No 116
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=6e-11 Score=83.52 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=65.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.+..|||+|||+.+|+.+|...|++||.|.++.+++++.+| |||+.|++..+..-|+.-|||..+.|+.+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 34579999999999999999999999999999999998764 999999999999999999999999996543
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=3.9e-09 Score=64.99 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=46.1
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCC------CCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 122 WQDLKDHMR----RAGDVCFSQ-VFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 122 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
+++|+++|. .||.|..+. +..++ ..|+|||+|.+.++|.+|+..|||..+.|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 567788887 999999885 44432 346999999999999999999999999996553
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=4.8e-09 Score=86.13 Aligned_cols=82 Identities=26% Similarity=0.464 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.|||.+|...+-..+|++||+.||.|+..+|+.. +....|+||++.+.++|.++|..|+-+.|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4578999999999999999999999999999998653 4557899999999999999999999999999999999988
Q ss_pred CCCCC
Q 027194 82 GGRGR 86 (226)
Q Consensus 82 ~~~~~ 86 (226)
+.+..
T Consensus 484 NEp~G 488 (940)
T KOG4661|consen 484 NEPGG 488 (940)
T ss_pred cCccc
Confidence 66543
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=6.5e-11 Score=100.79 Aligned_cols=137 Identities=23% Similarity=0.321 Sum_probs=113.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe---cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+++|+.||++.+.+.+|...|..+|.+..+++. ..+..+|+||++|..++.+.+|+....++.+. +
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-K-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-h--------
Confidence 44678999999999999999999999988777763 35778999999999999999999954444443 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDD 158 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~ 158 (226)
..++|.|.|+..|.++|+.++..+|.+....++.... .|-|+|.|.+..+
T Consensus 737 ---------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 737 ---------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ---------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 0277999999999999999999999999877655443 4689999999999
Q ss_pred HHHHHHHcCCcccccceee
Q 027194 159 MKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 159 A~~a~~~l~~~~~~g~~~~ 177 (226)
|..++..+.+..+....+.
T Consensus 790 ~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGE 808 (881)
T ss_pred hhhhcccchhhhhhhcCcc
Confidence 9999998888777654443
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.93 E-value=1.2e-08 Score=66.09 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=62.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC----CceEEE
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 77 (226)
+||+|+|||...|.++|.+++... |...-+.+.. ++.+.|||||.|.+++.|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988754 5666666644 4677899999999999999999999998875 556666
Q ss_pred EEcc
Q 027194 78 ELAH 81 (226)
Q Consensus 78 ~~~~ 81 (226)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=3.1e-08 Score=77.77 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=113.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCee---EEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIA---HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~---~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.+.+..|..++||+..++.+|..+|.-.-... .+.+.-.+...|.|.|.|.+++.-..|++ -+.+.+.++.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 35677888999999999999999998542111 11223345667999999999999999999 677788899999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhc-----C--CeeEEEEeeCCCCCEEEEE
Q 027194 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA-----G--DVCFSQVFRDGSGTTGIVD 152 (226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-----g--~v~~~~~~~~~~~~~a~v~ 152 (226)
+......+-...... ....-..+.....|.+.+||+++++.++.++|... | .|..+....+..+|-|||.
T Consensus 136 a~ge~f~~iagg~s~---e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSN---EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred cCchhheEecCCccc---cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 764433221111100 00111223445578899999999999999999622 2 2344444455567899999
Q ss_pred eCCHHHHHHHHHHcCCcccc
Q 027194 153 YTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 153 f~~~~~A~~a~~~l~~~~~~ 172 (226)
|..+++|+.|+.+ |...++
T Consensus 213 fa~ee~aq~aL~k-hrq~iG 231 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIG 231 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHh
Confidence 9999999999984 443333
No 122
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.89 E-value=4.4e-09 Score=85.46 Aligned_cols=75 Identities=32% Similarity=0.606 Sum_probs=65.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.+|||.|||+++++++|+++|..||.|+...|.. .+....||||+|++.+.++.|++ -+-..++++++.|+--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4599999999999999999999999999888722 24444999999999999999999 568889999999987654
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.85 E-value=6.3e-09 Score=81.13 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE---ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+++|++++...+.+.++..++...|.+....+ .....++|++++.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999999999999997776666 2346779999999999999999999443345556665555443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCCH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRS-EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNY 156 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~ 156 (226)
....... .........+ ....+|.+++..+++++|+..|..+|.|..+.+...+..+ +|+|.|.+.
T Consensus 167 ~~~~~~~---------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 167 RRGLRPK---------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred ccccccc---------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 2221000 0000111122 3334499999999999999999999999999998877654 889999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeecCCCCC
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDG 191 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~~~~ 191 (226)
..+..++.. ....+.+ ..+.+..+.++..+
T Consensus 238 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 238 NSKKLALND-QTRSIGG----RPLRLEEDEPRPKS 267 (285)
T ss_pred hhHHHHhhc-ccCcccC----cccccccCCCCccc
Confidence 999999987 7888888 45666666554443
No 124
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.4e-09 Score=76.47 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=72.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
...+|||++|...+++..|...|-.||.|..+.++.+. ..+||||+|.-.++|..|+..||+.++.| +.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 44589999999999999999999999999999988764 34699999999999999999999999999 57777
Q ss_pred eeecCCCCCCC
Q 027194 183 REYDHRRDGSQ 193 (226)
Q Consensus 183 ~~~~~~~~~sr 193 (226)
..++|.+.-..
T Consensus 85 N~AkP~kikeg 95 (298)
T KOG0111|consen 85 NLAKPEKIKEG 95 (298)
T ss_pred eecCCccccCC
Confidence 77777555443
No 125
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.82 E-value=2.2e-08 Score=73.39 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=62.9
Q ss_pred CcceEEecCCCCCCCHHHHHH----HHHhcCCeeEEEEee-CCCCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 107 SEYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFR-DGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~-~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
+..+|||.||+..+..++|+. +|++||.|..|.... .+-.|-|||.|++.+.|-.|+..|+|..+.|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 334899999999999999887 999999999988874 45567999999999999999999999999998664
No 126
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=8.4e-09 Score=77.87 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
....+||+|+.+.+|.+++...|+.||.|..+.+.. .++++|||||+|.+.+.++.|+. |++..+.|+.|.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 567899999999999999999999999998777744 36789999999999999999999 99999999999998865
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=84.88 Aligned_cols=80 Identities=26% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC------CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
..++.|||+||++.++++.|-..|..||+|..+++++. .....++||-|-+-.+|++|+..|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45678999999999999999999999999999999652 244679999999999999999999999999999999
Q ss_pred EEccCC
Q 027194 78 ELAHGG 83 (226)
Q Consensus 78 ~~~~~~ 83 (226)
-|++.-
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 998643
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.75 E-value=4.8e-08 Score=82.04 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=119.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.+-+.+.++..+..+++++|... .|....|.+ .+...|.++|+|....++++|++ -|...+-++.+++....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 35667778999999999999999643 455555533 23337999999999999999998 67777778888886655
Q ss_pred CCCCCCCCCCCC--------------------CCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE-EEE
Q 027194 82 GGRGRSSSDRHS--------------------SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 140 (226)
Q Consensus 82 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~ 140 (226)
...-........ ....+..-..+...+.+|||..||..+++..+.++|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 322111111000 00000011123346779999999999999999999988776665 555
Q ss_pred eeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 141 FRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 141 ~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
...+ .++.|||.|..++++.+|..--+..+++. +.|+++
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 4444 34589999999999999998666666665 455554
No 129
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=2.1e-08 Score=78.57 Aligned_cols=82 Identities=27% Similarity=0.551 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
+..|||++||+++++++++++|.+||.|..+.++.| ...+||+||.|.+++++.+++. ...+.|.|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 568999999999999999999999999988888654 5778999999999999999998 888999999999999987
Q ss_pred CCCCCC
Q 027194 83 GRGRSS 88 (226)
Q Consensus 83 ~~~~~~ 88 (226)
......
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 665443
No 130
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.73 E-value=9.9e-08 Score=58.96 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~----l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..|+|.|||-+.+... |++++..|| .|..| . .+.|+|.|.+++.|.+|.+.|+|..+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999988776 556777776 66665 2 5899999999999999999999999999999999875
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.69 E-value=4.3e-08 Score=72.89 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=110.9
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 9 LYVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 9 l~v~nlp~~~t~~~-l--~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++.++-..+.++- | ...|+.+-......+..+ +.-.+++|+.|.....-.++...-+++++...+|.+.-...+
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34445444444444 2 566666655555555333 445789999999999888888877777777666544322221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A 159 (226)
.... . ..-...+..||-+.|..+++++.|-..|..|-.....++++++.+ ||+||.|.++.++
T Consensus 179 edPs------------l-~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 179 EDPS------------L-AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred CCcc------------c-ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 1111 1 111235667999999999999999999999998888888887654 5999999999999
Q ss_pred HHHHHHcCCcccccceee
Q 027194 160 KHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~ 177 (226)
..|+..|+|.+++.+.+.
T Consensus 246 ~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIK 263 (290)
T ss_pred HHHHHhhcccccccchhH
Confidence 999999999999995443
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.60 E-value=2.5e-07 Score=69.87 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=65.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....|.|.|||+.+++++|+++|..||.+..+-+..++.+ |.|-|.|...++|..|++.+||..++|+.+...+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3467999999999999999999999998888888888776 6899999999999999999999999998754433
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=3.7e-07 Score=77.77 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=65.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeec
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
.+++|||++|+..+++.+|..+|+.||.|..+.+... .++|||.|....+|.+|+.+|++..+.++ .|++.+.-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~k----~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVADK----TIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccce----eeEEeeec
Confidence 5779999999999999999999999999999877654 35999999999999999999999999884 56666654
Q ss_pred C
Q 027194 187 H 187 (226)
Q Consensus 187 ~ 187 (226)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.56 E-value=3.8e-07 Score=75.27 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=62.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-C---EEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-T---TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~---~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.+.+|+|.+|...+...+|+.+|+.||+|.-.+|+.+... | |+||+|.+.++|.++|..||..++.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 4569999999998889999999999999999998877533 2 999999999999999999999999996543
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=5.1e-07 Score=70.18 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHH-cCCcccccceeeeEEEEee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK-LDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~-l~~~~~~g~~~~~~i~~~~ 184 (226)
..-.+|||++|...+++.+|++.|.+||.+..+.++.... +|||+|.+.+.|+.|..+ ++...+.| .++.+.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEEe
Confidence 4566999999999999999999999999999998887664 999999999999998875 55566677 4666666
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
.++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 655
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=70.45 Aligned_cols=76 Identities=18% Similarity=0.411 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE---ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
....||.+.|..+++++-|-..|..|-....-++ ..+++++||+||-|.++.++..|+..|+|.+++.++|++..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3568999999999999999999999876554444 457999999999999999999999999999999999998654
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.51 E-value=7e-07 Score=64.63 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=62.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
.....+++..+|..+.+.++..+|.++ |.|....+.++..+ |||||+|.+++.|.-|.+.||+..|.|+.+.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345578899999999999999999998 56666666555544 5999999999999999999999999998876544
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.49 E-value=1.8e-06 Score=55.99 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=55.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
++|.|.|||...+.++|.+++... |....+.++.|- +-|||||.|.+++.|.+-.+.++|..+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 579999999999999999999864 445556665553 457999999999999999999999999753
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.44 E-value=5.4e-07 Score=59.74 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=40.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCc
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~ 169 (226)
+.|+|.+++..++.++|++.|..||.|.+|.+..+.. .|+|.|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5688999999999999999999999999998877654 8999999999999999876655
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.43 E-value=7.7e-07 Score=59.00 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCC-----CCCCceEEEE
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVE 78 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~-----~~~g~~i~v~ 78 (226)
+.|+|.+++..++.++|+..|..||.|..|.+.. .-..|||.|.+++.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5789999999999999999999999999998873 3569999999999999999876433 4445555443
No 141
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=1.9e-07 Score=68.02 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
.+...+|||.|+...++++.|.++|-+.|.|..+.|..+... .||||.|+++....-|++.|||..+.+..++...+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 345668999999999999999999999999999999876543 499999999999999999999999998776655544
Q ss_pred e
Q 027194 183 R 183 (226)
Q Consensus 183 ~ 183 (226)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=2.9e-07 Score=75.64 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.+..+|+|.|||..+++++|..+|+.||+|..+..... ..+.+||+|.+..+|+.|++.|++.++.|+.++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45668999999999999999999999999998544333 446999999999999999999999999997554
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.7e-06 Score=73.22 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-------CEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 101 RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 101 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
.+...+..++|||+||++.++++.|...|..||.|..++++..... .++||.|-+..+|.+|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3344456789999999999999999999999999999998865432 389999999999999999999999988
Q ss_pred ceeeeEEEEeee
Q 027194 174 AFSRAYVRVREY 185 (226)
Q Consensus 174 ~~~~~~i~~~~~ 185 (226)
..+++.+.
T Consensus 247 ----~e~K~gWg 254 (877)
T KOG0151|consen 247 ----YEMKLGWG 254 (877)
T ss_pred ----eeeeeccc
Confidence 45555555
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=5.3e-06 Score=67.77 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=59.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEee----CCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
....|||.|||.+++.++|+++|..||.|....|.. +....||||+|.+.+++..|+.+ +-..+++ .++.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCC----eeEEE
Confidence 344599999999999999999999999998866654 23335999999999999999995 4666667 45555
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
++.++
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 55544
No 145
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.35 E-value=3.9e-06 Score=61.55 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=61.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEee-CCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.-.+|||.+||.++...+|..+|..|...+.+.+-. ++.. .+|||+|.+..+|..|+..|||..|+-..- ..++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~-stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG-STLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC-ceeE
Confidence 356899999999999999999999988766655532 3332 489999999999999999999999974222 3344
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
++.++.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 444433
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.34 E-value=5e-06 Score=51.54 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=44.7
Q ss_pred eEEecCCCCCCCHH----HHHHHHHhcC-CeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 110 RVLVTGLPSSASWQ----DLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 110 ~l~v~nl~~~~~~~----~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
.|+|.|||...+.. .|+++++.+| .|..+ .++.|.|.|.+.+.|.+|.+.|+|..+.|. +|.+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~----kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGN----KISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS------EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccc----eEEEEE
Confidence 58999999988764 5667777777 45544 235899999999999999999999999994 555555
Q ss_pred e
Q 027194 185 Y 185 (226)
Q Consensus 185 ~ 185 (226)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=3.9e-07 Score=67.41 Aligned_cols=70 Identities=34% Similarity=0.532 Sum_probs=63.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
+...+.|.|.+++..+...+|.+.|+++|.+..... ..+++||+|.+.++|..|+..|++..+.++.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 356789999999999999999999999999854444 3799999999999999999999999999999999
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.31 E-value=3.7e-07 Score=68.18 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=51.3
Q ss_pred HHHHHHhh-hcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 21 REVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 21 ~~l~~~f~-~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++|...|+ .||.|+.+.|.. ..+-.|.+||.|..+++|++|++.|||..+.|++|..+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 899999998843 34568999999999999999999999999999999998863
No 149
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.19 E-value=9.4e-06 Score=68.74 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=66.0
Q ss_pred CCCCc-eEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 3 SRASR-TLYVGNLPGDIREREVEDLFYKYGPI-AHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 3 ~~~~~-~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
.++.+ +|-+.|+|++++.+||.++|..|-.+ .+|.+ ..+|...|-|.|-|++.+.|..|...|++..|..++|.+.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 35566 88899999999999999999999644 23333 4578889999999999999999999999999999999886
Q ss_pred E
Q 027194 79 L 79 (226)
Q Consensus 79 ~ 79 (226)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 150
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.19 E-value=1e-06 Score=65.79 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=60.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-----------CCCC----ceEEEEEcCHHHHHHHHHhcCCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----------PRPP----GYAFVEFEEARDAEDAIRGRDGYD 69 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~a~~~l~~~~ 69 (226)
.+-+|||++|||.+...-|+++|..||.|-.|.+.+. +... .-|+|+|.+...|......|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3568999999999999999999999999999999542 1122 357899999999999999999999
Q ss_pred CCCceE
Q 027194 70 FDGHRL 75 (226)
Q Consensus 70 ~~g~~i 75 (226)
|.|+.=
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.12 E-value=9.9e-06 Score=46.60 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=44.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHH
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (226)
++.|-|.|.+++..+ .+...|..||.|..+.+. .....+||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 357889999988665 455588899999998886 34789999999999999986
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.09 E-value=4.1e-06 Score=65.60 Aligned_cols=80 Identities=31% Similarity=0.479 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEE---ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
-.-+|||-+||..+++++|.++|..+|.|. .|.+ ..|+.+|+-|.|.|.+...|+.|+..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 356899999999999999999999999874 2333 34688999999999999999999999999999999
Q ss_pred eEEEEEccCCC
Q 027194 74 RLRVELAHGGR 84 (226)
Q Consensus 74 ~i~v~~~~~~~ 84 (226)
+|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998877544
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=2.1e-05 Score=61.25 Aligned_cols=76 Identities=24% Similarity=0.453 Sum_probs=61.9
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHhhhcCCeeEEEEec-CC--CC-CceE--EEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 6 SRTLYVGNLPGDIRERE----V--EDLFYKYGPIAHIDLKI-PP--RP-PGYA--FVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~----l--~~~f~~~G~v~~~~~~~-~~--~~-~g~a--fV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
.+-+||-+||+.+..++ | .++|.+||.|..|-+.+ +. .+ .+.+ ||+|.+.++|..++...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887777 2 48999999999999954 21 11 2234 9999999999999999999999999
Q ss_pred eEEEEEcc
Q 027194 74 RLRVELAH 81 (226)
Q Consensus 74 ~i~v~~~~ 81 (226)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 154
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.00 E-value=9.3e-05 Score=57.88 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=63.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
....++.|||.|||.++|.+++.++|..+|.|. .|++..+..+ |-|++.|.-.++..-|++.|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344566799999999999999999999999764 2566666543 57999999999999999999999999
Q ss_pred cceeeeEEEEeee
Q 027194 173 NAFSRAYVRVREY 185 (226)
Q Consensus 173 g~~~~~~i~~~~~ 185 (226)
|+ .+++..+
T Consensus 210 g~----~~rVerA 218 (382)
T KOG1548|consen 210 GK----KLRVERA 218 (382)
T ss_pred Cc----EEEEehh
Confidence 95 5555544
No 155
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.97 E-value=6.5e-06 Score=64.43 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=72.1
Q ss_pred CCCCCceEE-EcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 2 SSRASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 2 ~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
+..++.++| +++|+..++.++|+..|..+|.|..+++.. ++..+|+|||.|.+...+..++.. ++..+.++++.+
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 345666777 999999999999999999999999999944 578899999999999999999996 889999999999
Q ss_pred EEccCCCC
Q 027194 78 ELAHGGRG 85 (226)
Q Consensus 78 ~~~~~~~~ 85 (226)
....+.+.
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 88765443
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.94 E-value=1.2e-05 Score=62.89 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEE---ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
.-..++||+||-+++|++||.+.+...| .+.++++ ...|++||||+|...+..++++.|+.|..+.++|+.-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999998887 4555555 2358999999999999999999999999999999876664
Q ss_pred Ecc
Q 027194 79 LAH 81 (226)
Q Consensus 79 ~~~ 81 (226)
..+
T Consensus 158 ~~N 160 (498)
T KOG4849|consen 158 SYN 160 (498)
T ss_pred ccc
Confidence 433
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5.9e-05 Score=62.60 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCCCCH------HHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceE
Q 027194 5 ASRTLYVGNLPGDIRE------REVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRL 75 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~------~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i 75 (226)
-..+|+|.|+|..-.. .-|..+|+.+|+|..+.+.. .|..+||+|++|.+..+|+.|++.|||..++ +..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3567899999875332 23568899999999998864 4678999999999999999999999998886 6777
Q ss_pred EEEEcc
Q 027194 76 RVELAH 81 (226)
Q Consensus 76 ~v~~~~ 81 (226)
.|..-+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776554
No 158
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.88 E-value=0.00012 Score=55.59 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=63.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.....++|+|+.+.++.+++...|+.+|.+..+.+..+... ++++|+|.+.+.++.|+. |+|..+.|..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 35557999999999999999999999999988888777665 499999999999999999 999999997664
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.85 E-value=9.2e-05 Score=48.39 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=53.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-Ee---------cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LK---------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~~---------~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
.++.|.|-+.|+. ....|-+.|+.||.|.+.. +. .......+..|+|.++.+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4667889999998 5667889999999997764 10 112346799999999999999999 8999998865
Q ss_pred EE-EEEc
Q 027194 75 LR-VELA 80 (226)
Q Consensus 75 i~-v~~~ 80 (226)
|- |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 44 5554
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0001 Score=60.61 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=56.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHh
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~ 64 (226)
++.+||||++||.-++.++|..+|. .||.|..+-|-.| +..+|-|=|+|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 7899999999999999999999999 8999999988666 57789999999999999999983
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.81 E-value=2.1e-05 Score=58.99 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 123 QDLKDHMR-RAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 123 ~~l~~~f~-~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
++|...|. +||.|..+.|-.+-. .|.++|.|...++|+.|+..|||.++.|+++.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 44555555 899988876654432 35899999999999999999999999998776544
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.77 E-value=0.00016 Score=50.10 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=53.6
Q ss_pred CCCCceEEEcCCCC-----CCCHH----HHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 3 SRASRTLYVGNLPG-----DIRER----EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 3 ~~~~~~l~v~nlp~-----~~t~~----~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
|.|.-||.|.=+.+ ..-++ +|-+.|..||.|.-+++. .+.-+|+|.+.+.|.+|+. ++|..+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 35666776654441 12233 577888899999988887 5789999999999999999 999999999
Q ss_pred eEEEEEccCC
Q 027194 74 RLRVELAHGG 83 (226)
Q Consensus 74 ~i~v~~~~~~ 83 (226)
.|+|.+..+.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999987543
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.75 E-value=0.0002 Score=46.83 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=49.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEE-E----------eeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
....|.|.+.|.. ....+.+.|+.||.|.... + .......+..|+|.++.+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899877 4567889999999987764 1 111223489999999999999999 7999999865
Q ss_pred ee
Q 027194 176 SR 177 (226)
Q Consensus 176 ~~ 177 (226)
+.
T Consensus 83 mv 84 (100)
T PF05172_consen 83 MV 84 (100)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=6.9e-05 Score=65.38 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC--CceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~ 80 (226)
+.+++.+++++|++++....|...|..||.|..|.+. +..-||||.|++...|+.|+..|-|..|. .+.+.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 3578899999999999999999999999999999887 44679999999999999999999999987 477999888
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 529 ~~~~~ 533 (975)
T KOG0112|consen 529 SPPGA 533 (975)
T ss_pred cCCCC
Confidence 75544
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.69 E-value=0.00016 Score=55.38 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCC-----EEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 122 WQDLKDHMRRAGDVCFSQVFRDGSGT-----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~~~-----~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
++++.+.|..||.|..|.|+..++.. --||+|...++|.+|+--|||.+|+|+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 46788999999999999888776543 579999999999999999999999997665
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.65 E-value=5.5e-05 Score=63.10 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC---CceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~ 79 (226)
.++++|+|.||-.-.|.-+|+.++. .+|.|...+|- +=|-.|||.|.+.++|......|||..+. ++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 56678777662 12789999999999999999999998884 67788888
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 76
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00019 Score=41.24 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=40.4
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHH
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~ 163 (226)
.|-|.+.+....+ .+...|..||.|....+.... ...+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 5778888866654 466688999999998887333 38999999999999985
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.64 E-value=3e-05 Score=58.10 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=60.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---------C-------EEEEEeCCHHHHHHHHHHcCCccc
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------~-------~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
.-.||+.+||+.+....|+++|..||.|-.|.+...... + -|.|+|.+...|......|||.+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988655332 1 388999999999999999999999
Q ss_pred ccceee
Q 027194 172 RNAFSR 177 (226)
Q Consensus 172 ~g~~~~ 177 (226)
+|+...
T Consensus 154 ggkk~S 159 (278)
T KOG3152|consen 154 GGKKKS 159 (278)
T ss_pred CCCCCC
Confidence 996543
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.64 E-value=5.6e-05 Score=60.68 Aligned_cols=63 Identities=30% Similarity=0.343 Sum_probs=55.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--------CC--------CCceEEEEEcCHHHHHHHHHhcCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--------PR--------PPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--------~~--------~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
++++|.+.|||.+-..+.|.++|..+|.|+.|++.+. +. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999999999999999999999999999553 11 256899999999999999997754
No 170
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.0001 Score=63.95 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=69.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
...|+|.|.|+..|.++|+.++..+|++.++.+ .+.|+.+|.|||.|.++.++..++...+...+...-+.|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 356899999999999999999999999999987 457899999999999999999999999988888888888886653
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=0.00019 Score=53.97 Aligned_cols=96 Identities=26% Similarity=0.274 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCee
Q 027194 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (226)
Q Consensus 57 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 136 (226)
-|..|-..|++....|+.+.|.|+.. ..|+|.||..-+..+.|.+.|+.||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 45666677899999999999999853 3599999999999999999999999998
Q ss_pred EEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 137 FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 137 ~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
...+..|. .++-++|.|...-.|.+|+..++..-+.+-...+
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~ 104 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGR 104 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCC
Confidence 85554443 3357899999999999999988666565543333
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.44 E-value=0.00049 Score=52.80 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=50.7
Q ss_pred HHHHHHHhhhcCCeeEEEEecCC----CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 20 EREVEDLFYKYGPIAHIDLKIPP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 20 ~~~l~~~f~~~G~v~~~~~~~~~----~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
++++.+.++.||.|..|.|.... ...--.||+|...++|.+|+--|||.+|+|+.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 44577888999999988885431 23457899999999999999999999999999998764
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.35 E-value=0.002 Score=37.97 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=44.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHc
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l 166 (226)
..|+|.++. +++.++++.+|..| .....+.++.+. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 369999996 57888899999998 135677777775 7999999999999999865
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.32 E-value=0.0016 Score=40.57 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (226)
.+.+|+ .|+.+-..||.++|.+||.|.--.+. -..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 455664 99999999999999999999877775 5799999999999999998775
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.26 E-value=0.00096 Score=53.85 Aligned_cols=67 Identities=13% Similarity=0.299 Sum_probs=56.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCC--------------CEEEEEeCCHHHHHHHHHHc
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSG--------------TTGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------~~a~v~f~~~~~A~~a~~~l 166 (226)
+..+..+|.+.|||.+-.-+.|.++|..+|.|..|.|... +.. -+|+|+|.+.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3357889999999999988999999999999999999876 221 26999999999999999988
Q ss_pred CCcc
Q 027194 167 DDSE 170 (226)
Q Consensus 167 ~~~~ 170 (226)
+...
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 6544
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.22 E-value=0.0013 Score=51.53 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=56.7
Q ss_pred CcceEEecCCCCCCCHHH------HHHHHHhcCCeeEEEEeeCCC-----CCE--EEEEeCCHHHHHHHHHHcCCccccc
Q 027194 107 SEYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDGS-----GTT--GIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~------l~~~f~~~g~v~~~~~~~~~~-----~~~--a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
...-+||-+|+..+..++ -.++|.+||.|..+.|-+.-. .+. .+|+|.+.++|.+|+...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 344688999998886665 248999999999987765431 122 3899999999999999999999999
Q ss_pred ceeee
Q 027194 174 AFSRA 178 (226)
Q Consensus 174 ~~~~~ 178 (226)
+.+++
T Consensus 193 r~lka 197 (480)
T COG5175 193 RVLKA 197 (480)
T ss_pred ceEee
Confidence 87764
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0008 Score=56.13 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=55.5
Q ss_pred CcceEEecCCCCCCC------HHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 107 SEYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
-..+|+|.|+|---. ...|..+|+.+|++....++.++.+ |+.|++|.+..+|..|++.|||..+...
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 455788999885322 2456788999999999999877665 4899999999999999999999999753
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.20 E-value=0.0043 Score=42.73 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCCceEEEcCCCCCCC----HHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 3 SRASRTLYVGNLPGDIR----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
+.|..+|.|+=|...+. ...+...++.||+|.+|.+. ++..|.|.|.|..+|.+|+..++. ...|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 45677888876666544 34466677789999999885 478999999999999999998876 5667888887
Q ss_pred Ecc
Q 027194 79 LAH 81 (226)
Q Consensus 79 ~~~ 81 (226)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.11 E-value=0.0059 Score=49.79 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=59.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCc-eEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPG-YAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~g-~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
+++.|.|-.+|..+|..||-.|+..+- .|.++++.+|+.+.. .+.|.|.+.++|...++.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 478899999999999999999998774 788999988876655 68899999999999999999998863
No 180
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.07 E-value=2.2e-05 Score=66.23 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.+..++||+||...+..+=+..+...+|.|..+.... |+|++|.....+..|+..++-..++|..+.+..-...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 4678999999999999999999999999999887752 9999999999999999999999999998888764322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG 133 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 133 (226)
...+....... ......-.+.....-.++.+++..+.+......+...+
T Consensus 112 ~~n~~k~~~~~-~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~ 160 (668)
T KOG2253|consen 112 IENADKEKSIA-NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISS 160 (668)
T ss_pred hcCccccccch-hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccc
Confidence 22221111111 00000001111133455667766666555555554433
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00038 Score=58.30 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
....+.|+|.||--.+|.-+|++++..-|. |....|.+-+ ..|||.|.+.++|.....+|||..+-
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC
Confidence 346789999999999999999999996654 4444222222 38999999999999999999998884
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.98 E-value=0.0098 Score=39.67 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc-CCeeEEEEecCCCC-CceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRP-PGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~-~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
.+..+.+...|..++.++|..+.+.+ ..|..+++.+++.. +=.+.+.|.+.++|...+..+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444454444455556666555555 37778888888754 447888999999999999999998886
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.95 E-value=0.0045 Score=38.57 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=42.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
......+|. .|..+...+|.++|+.||.|. |.++.+ ..|||...+.+.|..|+..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d---TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND---TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT---TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC---CcEEEEeecHHHHHHHHHHhcc
Confidence 344556666 999999999999999999854 444444 3899999999999999987754
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.91 E-value=0.01 Score=34.98 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=40.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc----CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (226)
..|+|.|+. +++.++|..+|..| ++. .|.-.. -..|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId----DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID----DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec----CCcEEEEECCHHHHHHHHHcC
Confidence 578999984 58999999999998 433 233222 257889999999999999754
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.78 E-value=0.0078 Score=41.91 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 123 ~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
.+|.+.|..||.+.-+++..+ .-.|+|.+-+.|.+|+. |+|.++.|+.+....+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 367788889999888877665 57899999999999999 999999997766555443
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.72 E-value=0.0026 Score=53.12 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhh--cCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC--CCCCCceEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYK--YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVE 78 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~--~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~ 78 (226)
.-|.|.|+-||..+-.++++.||.. |-.+++|.+-. ..-=||+|++..+|+.|+..|.. +.|-|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4578899999999999999999974 67899998842 23569999999999999987654 45666665543
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.63 E-value=0.0014 Score=47.76 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhh-cCCe---eEEEEecC-----CCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-- 72 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v---~~~~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-- 72 (226)
+....|.|++|||.+|++++++.+.. ++.. ..+.-... ...-.-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999997776 6655 23321111 1224689999999999999999999977642
Q ss_pred ---ceEEEEEccCCC
Q 027194 73 ---HRLRVELAHGGR 84 (226)
Q Consensus 73 ---~~i~v~~~~~~~ 84 (226)
....|++|....
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 346677776533
No 188
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.51 E-value=0.0018 Score=50.66 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=12.9
Q ss_pred CceEEEEEcCHHHHHHHHH
Q 027194 45 PGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~ 63 (226)
..-.||.|..+..|..++.
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 5667888877766666555
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.34 E-value=0.0039 Score=51.09 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=62.2
Q ss_pred CceEEEcCCCCCC-CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 6 SRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 6 ~~~l~v~nlp~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
++.|-+..+|+.+ |-++|...|..||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.+...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 4556666666664 46789999999999999998532 5789999999999999988 89999999999999987643
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.33 E-value=0.019 Score=42.13 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=47.8
Q ss_pred CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC--CCCCCCceEEEEEccCC
Q 027194 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGG 83 (226)
Q Consensus 19 t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~ 83 (226)
..+.|+.+|..++.+..+.+. .+-+-..|.|.+.++|..|...|+ +..+.|..+.+.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999988887 456889999999999999999999 99999999999998543
No 191
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.0054 Score=49.13 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=52.0
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-------CEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
.|.|.||.+.++.++++.+|...|.|..+.++..... ..|||.|.+...+..|-. |.+..+-++
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr 79 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR 79 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee
Confidence 6889999999999999999999999998888764322 279999999888877766 666666554
No 192
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.21 E-value=0.0098 Score=47.15 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=58.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
.....++||-+||..+++++|.++|.+++.|.. +.+.++.. .+-|.|.|.++..|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345668999999999999999999999987642 33334433 358999999999999999999999998
Q ss_pred ccee
Q 027194 173 NAFS 176 (226)
Q Consensus 173 g~~~ 176 (226)
|..+
T Consensus 143 gn~i 146 (351)
T KOG1995|consen 143 GNTI 146 (351)
T ss_pred CCCc
Confidence 8543
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.11 E-value=0.0078 Score=45.54 Aligned_cols=75 Identities=28% Similarity=0.372 Sum_probs=59.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCC----CCCceEEEEEc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD----FDGHRLRVELA 80 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~----~~g~~i~v~~~ 80 (226)
..|||.||++-++.+.|..-|..||+|..--++. .++..+-++|+|...-.|.+|+..+...- ..+++..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999997655533 36778899999999999999998774322 23566666544
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.08 E-value=0.01 Score=48.72 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=55.6
Q ss_pred eEEecCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 110 RVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 110 ~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
.|-+.-.+..+ +.++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|+| +.|++-+..+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecC----ceeEEEEecC
Confidence 34444455554 568899999999999999886552 379999999999988887 79999999 5667766655
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.07 E-value=0.12 Score=34.56 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=48.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCC--EEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~--~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
..+.+...|+.++.+.|..+.+.+- .|..+++.++.... .++++|.+.++|..-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566667777766666555 56678888876543 68899999999999999999999974
No 196
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.99 E-value=0.0048 Score=48.35 Aligned_cols=11 Identities=0% Similarity=0.190 Sum_probs=5.4
Q ss_pred CCCHHHHHHHH
Q 027194 119 SASWQDLKDHM 129 (226)
Q Consensus 119 ~~~~~~l~~~f 129 (226)
.++++++.+++
T Consensus 212 d~~k~eid~ic 222 (367)
T KOG0835|consen 212 DTTKREIDEIC 222 (367)
T ss_pred CCcHHHHHHHH
Confidence 34555555444
No 197
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.95 E-value=0.056 Score=33.32 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=39.9
Q ss_pred eEEEcCC--CCCCCHHHHHHHhhhcC-----CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 8 TLYVGNL--PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 8 ~l~v~nl--p~~~t~~~l~~~f~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
++|| |+ -..+++.+|..++...+ .|-.|.+. ..|+||+.... .|..++..|++..+.|+++.|+.+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 33 33488999999998775 44567776 67999987755 788899999999999999999864
No 198
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.94 E-value=0.021 Score=36.29 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=50.6
Q ss_pred EEEEEcCHHHHHHHHHhc-CCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHH
Q 027194 48 AFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (226)
Q Consensus 48 afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (226)
|.|+|.++..|+..+..- +...+.+..+.|..+.........- .-.......+|.|.|||..+++++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~----------qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF----------QVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE----------EEEEcccCCEEEEeCCCCCCChhhhe
Confidence 689999999999999842 2244566666666543221110000 00112355679999999999999887
Q ss_pred HHHHhcCCeeEEEEeeCCCC
Q 027194 127 DHMRRAGDVCFSQVFRDGSG 146 (226)
Q Consensus 127 ~~f~~~g~v~~~~~~~~~~~ 146 (226)
+. ..+.+.+..++
T Consensus 71 D~-------LeIhFqK~snG 83 (88)
T PF07292_consen 71 DK-------LEIHFQKPSNG 83 (88)
T ss_pred ee-------EEEEEecCCCC
Confidence 76 34445555443
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.85 E-value=0.028 Score=47.21 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC--cccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~--~~~~g~~~~~~i~ 181 (226)
...|.|++..||.....|+++.+|.. +..++.|.+-.+. .=||+|.+..||+.|.+-|.. +.|-|+.+-++|+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 35667889999999999999999975 5678888776554 358999999999999875433 3455655555554
Q ss_pred E
Q 027194 182 V 182 (226)
Q Consensus 182 ~ 182 (226)
.
T Consensus 250 a 250 (684)
T KOG2591|consen 250 A 250 (684)
T ss_pred h
Confidence 3
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.67 E-value=0.0046 Score=48.63 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEEecCC------CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
+-+||-+|+..+..+.+- ..|.+||.|..|.+..+. ....-+||+|...++|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 456788898876655543 788899999999886532 12246999999999999999999999999999777
Q ss_pred EEcc
Q 027194 78 ELAH 81 (226)
Q Consensus 78 ~~~~ 81 (226)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6554
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.67 E-value=0.64 Score=36.31 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=96.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCC----------CCCceEEEEEcCHHHHHHHHHh----cCC--CC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RDG--YD 69 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~a~~~----l~~--~~ 69 (226)
++.|.+.|+..+++-..+...|-.||+|+.|.+..+. .......+-|.+.+.|...+.. |+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999996543 3357889999999998776543 222 45
Q ss_pred CCCceEEEEEccCCCCCCC--CCCCCCC----CCCCC-CCCCCCCcceEEecCCCCCC-CHHHHHHHHH---hcCC----
Q 027194 70 FDGHRLRVELAHGGRGRSS--SDRHSSH----SSGRG-RGVSRRSEYRVLVTGLPSSA-SWQDLKDHMR---RAGD---- 134 (226)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~--~~~~~~~----~~~~~-~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~---~~g~---- 134 (226)
+....|.+.+..-.-.... ....... ...-. .-.....+..|.|. +...+ .++.+.+.+. .-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEE
Confidence 6677788777542111100 0000000 00111 11223344455554 33444 3333333332 2221
Q ss_pred eeEEEEeeCCC------CCEEEEEeCCHHHHHHHHHHcC
Q 027194 135 VCFSQVFRDGS------GTTGIVDYTNYDDMKHAIKKLD 167 (226)
Q Consensus 135 v~~~~~~~~~~------~~~a~v~f~~~~~A~~a~~~l~ 167 (226)
++.+.++.... ..||.+.|-+...|.+.+.-+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34455543321 1399999999999999998554
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.33 E-value=0.045 Score=39.95 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=46.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeCCCC------CEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~~------~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
....|.|.+||+.+|++++.+.+.. ++.. .++.-...... .-|+|.|.+.+++..-...++|..|.+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3457999999999999999997776 5554 23321122111 15999999999999999999998886543
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.099 Score=40.74 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=52.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce-EEEEEcc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-LRVELAH 81 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-i~v~~~~ 81 (226)
.=|-|-++|+. ...-|-.+|..||.|.....- ..-.+-+|.|.+..+|++||. .||+.|+|.. |-|..+.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 34667788776 345677899999998776443 335699999999999999999 8999888654 4455543
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.94 E-value=0.14 Score=42.14 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=57.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCC--CEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~--~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
+..|+|-.+|.-++--+|..++..+- .|..+.++++... ..++|+|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 66788999999999999999998766 5778888887543 378999999999999999999999975
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=0.26 Score=38.53 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=52.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+..|.|.++|..-. ..|..+|.++|.|...... .++.+-+|.|.+..+|.+||. -||..|+|..+
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 356777888875443 5677899999998876444 555599999999999999999 69999988643
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.18 Score=42.76 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=64.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhc----CCeeEEEEecC-------------CC-------------C-------
Q 027194 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR-------------P------- 44 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~-------------~~-------------~------- 44 (226)
+.+++.|-|.|+.|+ +...+|..+|..| |.|.+|.|+++ |. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 568899999999997 8899999999876 58888888541 11 0
Q ss_pred ---------------C--ceEEEEEcCHHHHHHHHHhcCCCCCC--CceEEEEEccC
Q 027194 45 ---------------P--GYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHG 82 (226)
Q Consensus 45 ---------------~--g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~ 82 (226)
. =||.|+|.+++.|.+.+..++|..|. +..|-+.|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 0 28999999999999999999999987 55666666543
No 207
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.42 E-value=0.046 Score=43.38 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=55.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
...++||+||-|-+|+++|.+.+...| .+..++++.+. ..|||+|..-+....++.++.|-.+.+.|+.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 345899999999999999999888777 44555565544 3469999999999999999999988888854
No 208
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.34 E-value=0.0015 Score=52.78 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=67.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
++.+.|.|||+....+.|..|...||.|..|....+.......-|+|...+.+..|+..++|..+....+++.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 46688999999999999999999999999998865544456677889999999999999999999999999987654
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.76 E-value=0.068 Score=47.27 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=60.9
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC--CCceEEEEEccCCCCCCC
Q 027194 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVELAHGGRGRSS 88 (226)
Q Consensus 11 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~~~~~~ 88 (226)
+.|.+-..+-.-|..+|..||.|.+.+...+ ...|.|+|...+.|..|+..++|+.+ -|-+.+|-+++...+...
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep 379 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEP 379 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccC
Confidence 3344445777889999999999999988643 67999999999999999999999776 488999999886555433
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.76 E-value=0.093 Score=37.17 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=71.7
Q ss_pred CCCHHHHHHHhhhc-CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCC
Q 027194 17 DIREREVEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSH 95 (226)
Q Consensus 17 ~~t~~~l~~~f~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~ 95 (226)
..+...|...+... +....+.+.. ...++..++|.+++++.+++. .....+.|..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-------
Confidence 45666666666542 3333334322 126899999999999999998 555666777777755432211110
Q ss_pred CCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 027194 96 SSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDG 144 (226)
Q Consensus 96 ~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 144 (226)
........-|.|.|||.. ++++.+..+.+.+|.+..+......
T Consensus 98 ------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 98 ------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 001113335778999987 5888999999999999888765443
No 211
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.61 E-value=0.22 Score=34.51 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=42.9
Q ss_pred CcceEEecCCCCCC----CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCc
Q 027194 107 SEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (226)
Q Consensus 107 ~~~~l~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~ 169 (226)
+-.+|.|.=|..++ +...+...++.||.|..+...-.. .|.|.|.+..+|.+|+.+++..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCC
Confidence 33456665554444 334455666789999988765333 7999999999999999998873
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.49 E-value=0.93 Score=27.20 Aligned_cols=55 Identities=22% Similarity=0.446 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 17 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
.++.++++..+..|+ ...|.... .|| ||.|.+..+|++.+...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 368889999999984 34444432 344 78899999999999999999988887765
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.48 E-value=0.065 Score=42.36 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=52.7
Q ss_pred ceEEecCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCC----C-C--EEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 109 YRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS----G-T--TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~----~-~--~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.-++|.+|+..+..+.+. +.|.+||.|..+.+..+.. . + .++|+|...++|..|+...+|..+.|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 446778888777555443 5778889999888877552 1 1 58999999999999999999999988763
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.21 E-value=0.55 Score=34.52 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcC--CcccccceeeeEEE
Q 027194 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVR 181 (226)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~--~~~~~g~~~~~~i~ 181 (226)
..+.|+++|..++.+....++..= +-..|.|.+.++|..|...|+ +..+.|..+..|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 457899999999987766555442 368899999999999999999 99999976555543
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.76 E-value=0.32 Score=42.05 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=58.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+.++..++||+|+...+..+-++.+...+|.|..+.... |||..|....-+..|+..++-..++|+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 3445677899999999999999999999999888775543 89999999999999999888888876544
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.69 E-value=0.26 Score=43.85 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
+.|.+...+-..|--+|..||.|..+..+++-+ .|.|+|.+.+.|..|+.+++|+++-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 334445566778999999999999998877766 8999999999999999999999875
No 217
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=88.18 E-value=0.18 Score=39.82 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=7.3
Q ss_pred CCHHHHHHHhhhc
Q 027194 18 IREREVEDLFYKY 30 (226)
Q Consensus 18 ~t~~~l~~~f~~~ 30 (226)
..+.+|+.+|++|
T Consensus 169 qpp~dLw~WyEpy 181 (453)
T KOG2888|consen 169 QPPADLWDWYEPY 181 (453)
T ss_pred CChhHHHHHhhhh
Confidence 3455566666655
No 218
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=86.30 E-value=0.28 Score=43.60 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=4.2
Q ss_pred ceEEEEEcCH
Q 027194 46 GYAFVEFEEA 55 (226)
Q Consensus 46 g~afV~f~~~ 55 (226)
.|+.+.....
T Consensus 60 ~y~~t~~~~~ 69 (1194)
T KOG4246|consen 60 VYGSTSLSSS 69 (1194)
T ss_pred cccccchhhh
Confidence 3444444433
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.07 E-value=6.2 Score=23.66 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 119 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
.++-++++..+..|+- ..|..+.. | =+|.|.+..+|.++....+|..+.+..
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 4677889999988863 23444442 1 349999999999999999999988743
No 220
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=84.62 E-value=0.31 Score=38.55 Aligned_cols=8 Identities=13% Similarity=0.932 Sum_probs=3.8
Q ss_pred CceEEEEE
Q 027194 45 PGYAFVEF 52 (226)
Q Consensus 45 ~g~afV~f 52 (226)
.||-||.|
T Consensus 160 lGFmYiRY 167 (453)
T KOG2888|consen 160 LGFMYIRY 167 (453)
T ss_pred heeeEEee
Confidence 34555544
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.49 E-value=3.2 Score=33.99 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=46.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCEEEEEeCCHHHHHHHHHH
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~ 165 (226)
-.+.|-|.++|..+..++|...|+.|+. --.|.++.+. .||..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 3568889999999988899999999884 3446777665 799999999999999983
No 222
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.10 E-value=1.6 Score=29.49 Aligned_cols=56 Identities=23% Similarity=0.397 Sum_probs=30.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCH-HHHHHHHH
Q 027194 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA-RDAEDAIR 63 (226)
Q Consensus 8 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 63 (226)
++.|-|+|.. ++.++|.+.|..|.+++-.-+.-.....|++.|+|... .--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4566688654 46788999999998876555544444579999999754 44445554
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.45 E-value=7.5 Score=24.56 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHh
Q 027194 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (226)
-|.--+++.++..+|++.++. || .|..|+........-=|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 344467899999999999986 45 677777755555566899999998888776543
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=80.86 E-value=10 Score=23.53 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=41.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
-|+-.+++.++..+|+..++. || .|..|+........-=|||.+...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 455578999999999988886 44 66777665544456689999988888776544
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.43 E-value=11 Score=23.04 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 118 SSASWQDLKDHMRRAGD-----VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 118 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
..++..+|..++...+. |-.+.+... |+||+-... .|..++..|++..+.|+.+..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 35677788888876653 445666544 888887654 788899999999999965543
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=78.47 E-value=2.6 Score=30.62 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=52.5
Q ss_pred ceEEEcCCCCCCC--HHH---HHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc-eEEEEEc
Q 027194 7 RTLYVGNLPGDIR--ERE---VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVELA 80 (226)
Q Consensus 7 ~~l~v~nlp~~~t--~~~---l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~ 80 (226)
.++.+++|+..+- .++ ...+|..|-+.....+. .+.+..-|.|.+++.|..|...+++..|.|. .++..++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 4577778876632 222 34556555555444444 4577888899999999999999999999988 7888777
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
+..
T Consensus 88 Q~~ 90 (193)
T KOG4019|consen 88 QPG 90 (193)
T ss_pred cCC
Confidence 643
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.63 E-value=2.1 Score=31.11 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=42.9
Q ss_pred eEEecCCCCCCC-----HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccc-eeeeE
Q 027194 110 RVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FSRAY 179 (226)
Q Consensus 110 ~l~v~nl~~~~~-----~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~-~~~~~ 179 (226)
.+++.+++..+. ......+|.++.......+++.- +...|.|.+++.|..|..++++..|.|+ .+..|
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 355555554432 23344555555544333333332 2577999999999999999999999997 34433
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.17 E-value=19 Score=31.22 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCcceEEecCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCCCC----------------------------------
Q 027194 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDGSG---------------------------------- 146 (226)
Q Consensus 106 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~~~---------------------------------- 146 (226)
..+..|-|.|+.|. +...+|.-+|..| |.|..|.|.....+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678889999885 5778888888754 46777777542111
Q ss_pred -----------------CEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 147 -----------------TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 147 -----------------~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
.||.|+|.+++.|......+.|.+|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 2799999999999999999999999753
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=12 Score=30.99 Aligned_cols=80 Identities=19% Similarity=0.394 Sum_probs=59.1
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhhc----CCeeEEEEecC-------------C---------------------
Q 027194 2 SSRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------P--------------------- 42 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~-------------~--------------------- 42 (226)
+++++..|-|-|+.++ +...+|...|+.| |.+..|.|++. |
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3678999999999987 7888999888865 57776776321 1
Q ss_pred -----C----------CC-------------------ceEEEEEcCHHHHHHHHHhcCCCCCC--CceEEEEEcc
Q 027194 43 -----R----------PP-------------------GYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (226)
Q Consensus 43 -----~----------~~-------------------g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~ 81 (226)
. -. =||.|++.+.+.+...+..++|..+. +..+-+.+..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0 01 27889999999999999999998876 3445555543
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=75.94 E-value=3.5 Score=33.59 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=48.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec------CCCCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI------PPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
-+.|-|.+||+.+++.+|.+-..+|-.-....... ..+.-+.|||.|..+++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45678999999999999998888765333322221 123357899999999999998888888554
No 231
>PF00937 Corona_nucleoca: Coronavirus nucleocapsid protein; InterPro: IPR001218 The entry represents the Coronavirus nucleocapsid protein. Sequence comparison of the N genes of five strains of the coronavirus Murine hepatitis virus suggests a three domain structure for the nucleocapsid protein []. There seems to be a specific interaction between the coronavirus Mouse hepatitis virus A59 nucleocapsid protein and packaging signal [].; GO: 0019013 viral nucleocapsid; PDB: 2GE7_A 2GEC_A 2GE8_B 2BXX_B 2BTL_A 2CA1_B 3HD4_A 2C86_A 2CJR_F 2OG3_A ....
Probab=75.48 E-value=0.94 Score=36.60 Aligned_cols=10 Identities=50% Similarity=0.621 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 027194 188 RRDGSQSPSR 197 (226)
Q Consensus 188 ~~~~srs~~r 197 (226)
++..||+.+|
T Consensus 165 Sr~~SRs~SR 174 (355)
T PF00937_consen 165 SRSNSRSSSR 174 (355)
T ss_dssp ----------
T ss_pred CCCCcccccc
Confidence 3444444433
No 232
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.45 E-value=11 Score=30.99 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHh
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (226)
.++|-|.++|...-.+||...|+.|+.- .+.|.+- ....||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 3678999999999999999999999642 3333221 146899999999999999983
No 233
>PF14893 PNMA: PNMA
Probab=70.91 E-value=6.1 Score=31.98 Aligned_cols=78 Identities=24% Similarity=0.232 Sum_probs=45.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhh----hcCCeeEEEE-ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceE
Q 027194 1 MSSRASRTLYVGNLPGDIREREVEDLFY----KYGPIAHIDL-KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~----~~G~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 75 (226)
|.-++.+.|.|.+||.++++++|.+.+. ++|...-..- .........|+|+|...-+-...=. .+.=.|-++
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~---~i~g~gg~W 89 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPR---EIPGKGGPW 89 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCch---hcCCCCCce
Confidence 4446888999999999999999887765 4454332221 1112335688888865433111111 112235677
Q ss_pred EEEEcc
Q 027194 76 RVELAH 81 (226)
Q Consensus 76 ~v~~~~ 81 (226)
.|-+-.
T Consensus 90 ~Vv~~p 95 (331)
T PF14893_consen 90 RVVFKP 95 (331)
T ss_pred EEEecC
Confidence 776654
No 234
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.65 E-value=12 Score=22.02 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.7
Q ss_pred HHHHHHhhhcCCeeEEEEe
Q 027194 21 REVEDLFYKYGPIAHIDLK 39 (226)
Q Consensus 21 ~~l~~~f~~~G~v~~~~~~ 39 (226)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999988883
No 235
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.58 E-value=2.8 Score=26.74 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhh
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFY 28 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~ 28 (226)
+-+.++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34678999999999999999997664
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.03 E-value=0.7 Score=39.23 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=49.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
.+|+||+.|++|.++..+|..++..+--+..+-+... .....+++|.|.---....|+..||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3688999999999999999999987765555554222 244578899998766667777777776553
No 237
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=65.66 E-value=19 Score=22.87 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (226)
...-|||++++..+-+.-...+.+..+.=..+-+..+....||+|-.+-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3456899999887665444444444444455555666667899998763
No 238
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=65.53 E-value=3 Score=33.12 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.6
Q ss_pred HHHHhcC
Q 027194 127 DHMRRAG 133 (226)
Q Consensus 127 ~~f~~~g 133 (226)
+.|+.+|
T Consensus 187 ~VCeVCG 193 (319)
T KOG0796|consen 187 RVCEVCG 193 (319)
T ss_pred hHHHhhh
Confidence 3333333
No 239
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.39 E-value=73 Score=28.20 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=65.2
Q ss_pred CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC--CCCC------CCceEEEEEccCCCCCCCC
Q 027194 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSS 89 (226)
Q Consensus 18 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~------~g~~i~v~~~~~~~~~~~~ 89 (226)
.-.++|.+.|..-+.+..+.+. ..||-++.+....-+......+. +..+ .|++|.|+++.+.+.
T Consensus 58 eiA~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt---- 129 (577)
T COG0018 58 EIAEEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT---- 129 (577)
T ss_pred HHHHHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC----
Confidence 3345566666655566777764 13565555554444444434333 2222 578999999864332
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCC
Q 027194 90 DRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGS 145 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 145 (226)
.-++|+-+...+-=+-|-.++...| .|.....+.|..
T Consensus 130 -------------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 130 -------------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred -------------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 2389999998888899999999999 677777776654
No 240
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=65.20 E-value=12 Score=23.61 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.0
Q ss_pred CCCCceEEEEEcCHHHHHHHHHhcCCCC
Q 027194 42 PRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (226)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (226)
+..+||.|||=.++.++..|+..+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3469999999999999999999776633
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.15 E-value=10 Score=29.79 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=36.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHH
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (226)
..-|+++|||.++-..||+..+...|-+. +.+.+.| ..|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeec-CCcceeEecCCcc
Confidence 34599999999999999999998776432 2333333 3688999997654
No 242
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=63.96 E-value=24 Score=19.76 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHH
Q 027194 20 EREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 20 ~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (226)
-.++-..|...| +|..+.+.......+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667777766 8888887554445778888888988887765
No 243
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.55 E-value=35 Score=21.18 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=41.0
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHHc
Q 027194 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~l 166 (226)
-|+..++...+..+++..++. |+ .|..+..+.-+... -|+|++..-+.|.....++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 344456778999999998886 66 67777776665432 6999998888888776543
No 244
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.26 E-value=8.4 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 38 (226)
....+||+-|||..+|++-|..+...+|-+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 46789999999999999999999999996665555
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.21 E-value=39 Score=21.35 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred ecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHHc
Q 027194 113 VTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~l 166 (226)
.-.++...+..++++.++. || .|..+..+..+.+. =|+|++..-..|.....++
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3345678899999999986 67 67778777665442 6999999988888876543
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.03 E-value=28 Score=27.98 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=23.6
Q ss_pred EEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 48 afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
|||+|.+..+|+.|.+.+..... ..+.+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999996554332 445666553
No 247
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=59.22 E-value=43 Score=21.85 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 16 GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 16 ~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
.+-++++|..+...-|.|.+|.+.......=-|.+...+..++...++.++.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3446778888888778999999976655556788889999999999998764
No 248
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=58.22 E-value=29 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=25.4
Q ss_pred CCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeC
Q 027194 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 143 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~ 143 (226)
.-..+...+.|.+++.. ++-.-..+.+...|++..+.|.+.
T Consensus 56 ~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 56 LLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred ccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 34456777888887642 333444556677888777766443
No 249
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=57.43 E-value=50 Score=23.27 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHH
Q 027194 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (226)
-|+--++..++..+|.+.++. |+ .|..|+........-=|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 344467889999999998886 44 5566665444444567999998777655433
No 250
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=57.20 E-value=18 Score=26.40 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCHHHHHHHhhhc-CCeeEEEEecC--C--CCCceEEEEEcCHHHHHHHHHh
Q 027194 18 IREREVEDLFYKY-GPIAHIDLKIP--P--RPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 18 ~t~~~l~~~f~~~-G~v~~~~~~~~--~--~~~g~afV~f~~~~~a~~a~~~ 64 (226)
.|+++|..+..-- |.+..+.+... + ..+|-.||+|.+.++|.+.++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555554443311 78888888442 2 5689999999999999987773
No 251
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=56.18 E-value=51 Score=21.06 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHc
Q 027194 122 WQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (226)
Q Consensus 122 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l 166 (226)
.+.++++++..| ++....+..++......+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 356777888777 677888888877777889999999888777543
No 252
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=55.90 E-value=64 Score=22.17 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 5 ASRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 5 ~~~~l~v~nlp~~---~t~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+...|.|+..... .+...+.+.+..-| .++.+... .+...|.|.+.++-.+|.+.+....-.+..|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4566777766443 56677888888777 55666554 458899999999999998888776666777777665
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 253
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=55.67 E-value=32 Score=22.41 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=29.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCH
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (226)
..-|||++++..+-+.--..+-+.++.=.-+-+..+...+||+|-++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 34589998777655433333333444433444455666679998876543
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=55.63 E-value=15 Score=30.01 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=47.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCC------CEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
..+.|..||+.+++.+|.+....+.. |.+..+...... +.|+|.|..+++...-...++|..|-.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 45778999999999999998888663 333444332211 258899999999888888888887743
No 255
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.81 E-value=44 Score=26.52 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=44.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-----------CCEEEEEeCCHHHHHH
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----------GTTGIVDYTNYDDMKH 161 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----------~~~a~v~f~~~~~A~~ 161 (226)
.+..|.+.|+...++--.+...|-.||.|++++++.+.. .....+.|-+.+.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 344688899999999888999999999999999987761 1267889988877554
No 256
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=51.73 E-value=47 Score=19.36 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=30.4
Q ss_pred CHHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 19 REREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 19 t~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
.-.+|-++|...| +|..+.....+. ++..-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 3456778887776 788887755443 5666666777777777776
No 257
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.62 E-value=27 Score=27.33 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHhhhcCCeeEEEEec--------CCC-----CCce---------EEE
Q 027194 5 ASRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLKI--------PPR-----PPGY---------AFV 50 (226)
Q Consensus 5 ~~~~l~v~nlp~~------------~t~~~l~~~f~~~G~v~~~~~~~--------~~~-----~~g~---------afV 50 (226)
-..||++.+||-. -+++-|+..|..||.|..|.+.. +++ ..|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3568999999864 35677999999999999888732 222 2233 345
Q ss_pred EEcCHHHHHHHHHhcCCCCC
Q 027194 51 EFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 51 ~f~~~~~a~~a~~~l~~~~~ 70 (226)
+|-....-..|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55555555566666666544
No 258
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=51.55 E-value=24 Score=21.38 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=23.0
Q ss_pred ceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
.+++|.|.+..+|.+|-..|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999988766554333
No 259
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=48.22 E-value=19 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=19.6
Q ss_pred EEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 148 ~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
+.++.|.+..+|.+|-+.|....+..+.+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 46677777777777777777666655433
No 260
>PF00906 Hepatitis_core: Hepatitis core antigen; InterPro: IPR002006 This entry represent the core domain of the viral capsid (HBcAg) from various Hepatitis B virus (HBV), which is a major human pathogen. The virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface.; GO: 0005198 structural molecule activity, 0009405 pathogenesis; PDB: 1HHH_C 2QIJ_C 3KXS_F 2G34_B 2G33_C 3OX8_F 3OXS_C 3OXR_C 1QGT_B.
Probab=46.70 E-value=6.5 Score=28.00 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=3.6
Q ss_pred HHHHHHhcC
Q 027194 125 LKDHMRRAG 133 (226)
Q Consensus 125 l~~~f~~~g 133 (226)
+.+++..||
T Consensus 114 V~eYlvsfg 122 (187)
T PF00906_consen 114 VTEYLVSFG 122 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 334444433
No 261
>PF15063 TC1: Thyroid cancer protein 1
Probab=45.80 E-value=15 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.5
Q ss_pred EEcCCCCCCCHHHHHHHhhhcCCe
Q 027194 10 YVGNLPGDIREREVEDLFYKYGPI 33 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~~G~v 33 (226)
=+.||-.+++..+|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356888899999999999988865
No 262
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=45.67 E-value=57 Score=29.77 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=42.2
Q ss_pred ceEEEcCCC--CCCCHHHHHHHhhhcC-CeeEEEEecCC-CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 7 RTLYVGNLP--GDIREREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 7 ~~l~v~nlp--~~~t~~~l~~~f~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
.-|+|.+-. ..++.....++|..|| +|.-+.+.+++ +.+.-+.+ .+.-..|+..||.....-.+|.
T Consensus 310 P~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~IL----~~eF~~ai~yLNqflp~e~rl~ 379 (868)
T KOG1888|consen 310 PDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESIL----REEFENAIDYLNQFLPPENRLK 379 (868)
T ss_pred CCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHHH----HHHHHHHHHHHhccCCCcceee
Confidence 345555554 4677788899999998 78888888776 33333333 4455667777775554444443
No 263
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=44.64 E-value=1.1e+02 Score=21.65 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.3
Q ss_pred eeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
|.++.+. ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 4444432 34699999999988898999886654
No 264
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=43.01 E-value=91 Score=20.17 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHhhhc--------CCeeEEEE--------ecCCCCCc-eEEEEEcCHHHHHHHHHh
Q 027194 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 14 lp~~~t~~~l~~~f~~~--------G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~a~~~ 64 (226)
|.++++++++..+...+ |.|..+.- ...+...| |.++.|.-..++.+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 67788888877665543 46655543 12345566 788889877777776663
No 265
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.27 E-value=1.2e+02 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=38.5
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHH
Q 027194 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~ 165 (226)
.++..++...+..+|++.++. |+ .|..|..+.-+.+. =|+|.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 444445678899999998886 66 56777766655532 699999877776655543
No 266
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=41.69 E-value=70 Score=20.38 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=29.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCceEEEEEcC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEE 54 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~ 54 (226)
..-|||++++..+-+ .|++..... +.=.-+-+..+...+||+|-++-+
T Consensus 25 ~~GVyVg~~s~rVRe-~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRE-RIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHH-HHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 455899988776554 455444443 333334445566678888887654
No 267
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.90 E-value=1.8e+02 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=34.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCEEEEEeCCH
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNY 156 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~ 156 (226)
..+-++++||+-++...+|+..+..-+- ...+.+ ....+-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee--ecCCcceeEecCCc
Confidence 3456999999999999999999887663 233333 22334799999653
No 268
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=40.14 E-value=6.7 Score=33.66 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=50.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
...+.+++.|+++.++-.+|..+|..+..+..+.+-..... .++.|.|+---....|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 45678999999999999999999998887766555433222 2678888766666666667777766653
No 269
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=40.04 E-value=66 Score=20.70 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcC
Q 027194 115 GLPSSASWQDLKDHMRRAGDV-CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (226)
Q Consensus 115 nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~ 167 (226)
.+-..++...+...|..-|.- .-..+-+|--..+|.|.|.+.+.+..|...|-
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 345577777787777766632 22334444444589999999999999988653
No 270
>PF14893 PNMA: PNMA
Probab=37.35 E-value=26 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHh
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRR 131 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~ 131 (226)
....|.|.+||.++++++|.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3445889999999999999888764
No 271
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=35.17 E-value=1.1e+02 Score=18.70 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=27.2
Q ss_pred HhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 26 ~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
-+..||.|.-+.-. ..|+.+ |-+.++++..++.+....+
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 34489988766432 456655 8899999999888776443
No 272
>PRK11901 hypothetical protein; Reviewed
Probab=35.00 E-value=1.9e+02 Score=23.49 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=37.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEE--EeCCHHHHHHHHHHcCCccc
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIV--DYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v--~f~~~~~A~~a~~~l~~~~~ 171 (226)
..++|-|.. .-.++.|..+...++. ..+.+..-. ..+|..| .|.+.++|..|+..|-....
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~L-~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQNL-SHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcCc-CceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 344555544 3457788888877762 333333322 2235443 68999999999998766544
No 273
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.74 E-value=21 Score=29.51 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHH--------HHHHHhhh--cCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHh
Q 027194 7 RTLYVGNLPGDIRER--------EVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~--------~l~~~f~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~ 64 (226)
+.+|+.+.....+.+ ++...|.. ++.+..+.... ...+.|..|++|.....|++++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 456666666654444 89999998 56777777744 356789999999999999998853
No 274
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.85 E-value=57 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.4
Q ss_pred EEEEeCCHHHHHHHHHHcCCccc
Q 027194 149 GIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 149 a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
|||+|.+..+|..|++.+....-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999996655554
No 275
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=32.69 E-value=1.8e+02 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=22.9
Q ss_pred EeeCCCCCEEEEEeCCHHHHHHHHHHcCC
Q 027194 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 140 ~~~~~~~~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
+......||.||+....+++..++..+.+
T Consensus 40 ~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 40 LAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 34445778999999988999999987655
No 276
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.63 E-value=37 Score=17.60 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHhhhcC
Q 027194 16 GDIREREVEDLFYKYG 31 (226)
Q Consensus 16 ~~~t~~~l~~~f~~~G 31 (226)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578999999998654
No 277
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.24 E-value=1.3e+02 Score=26.03 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=42.4
Q ss_pred EEcCCCCCCC---HHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceE
Q 027194 10 YVGNLPGDIR---EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (226)
Q Consensus 10 ~v~nlp~~~t---~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 75 (226)
+||||+.-.. ...+..+-..||+|-.+++= ..-.|...+.+.|+.|+. -++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 3556544333 34466666689999987772 234677889999999999 67888988886
No 278
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=31.76 E-value=1.2e+02 Score=18.21 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=38.7
Q ss_pred HHHHHHhhhcC-CeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 21 ~~l~~~f~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++|.+-|...| .|..+.-+. ++.....-||+.....+...+ ++=..+.++.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 56788888888 666666533 345556788887766553333 44456788899998754
No 279
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=31.54 E-value=1.4e+02 Score=25.89 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHHHHhh----hcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcC
Q 027194 20 EREVEDLFY----KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRD 66 (226)
Q Consensus 20 ~~~l~~~f~----~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (226)
--+|..+|. .+|-|..+.+.. .+......++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 446667665 678888888743 33445677889999999999987653
No 280
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=31.50 E-value=15 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=17.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHh
Q 027194 4 RASRTLYVGNLPGDIREREVEDLF 27 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f 27 (226)
..++++|||+||..+-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 468899999999886655533333
No 281
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=1.5e+02 Score=19.05 Aligned_cols=65 Identities=11% Similarity=0.232 Sum_probs=42.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCC----CCceEEEEEcCHHHHHHHHHhcCC
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPR----PPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~----~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
++..++.||. +|...++-..|.+.|+. .| ...++++..+|. .+.=+=+.|++-+..+...+.+-|
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 4466777777 88888888888888874 35 456666655442 133455667777776666665544
No 282
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=31.07 E-value=1.8e+02 Score=20.17 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=22.7
Q ss_pred ecCCCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 39 KIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 39 ~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
......+||.||++....+...++..+.|
T Consensus 32 ~vp~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 32 LAPESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred EccCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 33446799999999988888888876665
No 283
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.06 E-value=83 Score=17.69 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCe
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v 33 (226)
..++|.+.....+.++|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877688999999999999863
No 284
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=30.76 E-value=2.3e+02 Score=21.15 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhc-CCCCCC--CceEEE
Q 027194 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFD--GHRLRV 77 (226)
Q Consensus 18 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~--g~~i~v 77 (226)
.+.++..+++..++.-. +-|..++...|-+.+...+.++|..|+..+ ....+. +..|.|
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvI 85 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVI 85 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEE
Confidence 36777888888776433 445557766666677779999999998875 333333 344444
No 285
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=30.13 E-value=2e+02 Score=25.85 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=50.5
Q ss_pred eEEEcCC--CCCCCHHHHHHHhhhcCCee-----EEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 8 TLYVGNL--PGDIREREVEDLFYKYGPIA-----HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 8 ~l~v~nl--p~~~t~~~l~~~f~~~G~v~-----~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+|| |+ .-.+++.+|..++..-+.|. .|.|. ..|.||+.... .|...+..|++..+.|+.|.|+.+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcChh-hHHHHHHHhccccccCCceEEEEC
Confidence 3555 44 34488999998888776554 44444 67999997654 477888889999999999999987
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 561 ~ 561 (629)
T PRK11634 561 G 561 (629)
T ss_pred C
Confidence 5
No 286
>PRK11901 hypothetical protein; Reviewed
Probab=30.13 E-value=2.3e+02 Score=23.06 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=38.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCc-eEEE--EEcCHHHHHHHHHhcCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-RPPG-YAFV--EFEEARDAEDAIRGRDG 67 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~g-~afV--~f~~~~~a~~a~~~l~~ 67 (226)
...+|.|-.+ .+++.|..|...++ +..++++.+. ..+. |..| .|.+.++|+.|+..|..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4456666554 45777888888775 4556665432 1122 3333 38999999999998764
No 287
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.61 E-value=1.3e+02 Score=18.14 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcC
Q 027194 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (226)
Q Consensus 123 ~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~ 167 (226)
.++.+.+..+| +....+.-...+++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677777888 344444333335588888889999888887663
No 288
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.09 E-value=48 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~ 140 (226)
.++|+-|+|...+++.|..+..+.|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 36999999999999999999999987655433
No 289
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=28.86 E-value=53 Score=25.96 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEEEcCHHHHHHHHHhcCC-CCCCCceEEEEE
Q 027194 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVEL 79 (226)
Q Consensus 49 fV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~ 79 (226)
++-|+|.-.++-.+..|.. ..++-+.++|.+
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 4446666655555555554 455555555544
No 290
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.77 E-value=68 Score=25.23 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=72.4
Q ss_pred CceEEEEEc----CHHHHHHHHHhcCCCCCC----CceEEEEEccCCCCCCCCC-CCCCCCCCC--CCCCCCCCcceEEe
Q 027194 45 PGYAFVEFE----EARDAEDAIRGRDGYDFD----GHRLRVELAHGGRGRSSSD-RHSSHSSGR--GRGVSRRSEYRVLV 113 (226)
Q Consensus 45 ~g~afV~f~----~~~~a~~a~~~l~~~~~~----g~~i~v~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~v 113 (226)
...-||.|+ +..-+++.+..|+|..+. .-.++|..+......+... ....+.... ....+.....+|++
T Consensus 75 snid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~l 154 (445)
T KOG2891|consen 75 SNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHL 154 (445)
T ss_pred cccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceee
Confidence 457788885 445667777778875542 2233443332221111100 000000000 01122233446777
Q ss_pred cCCCCC------------CCHHHHHHHHHhcCCeeEEEEeeC-C--------CC-----CE---------EEEEeCCHHH
Q 027194 114 TGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRD-G--------SG-----TT---------GIVDYTNYDD 158 (226)
Q Consensus 114 ~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~~-~--------~~-----~~---------a~v~f~~~~~ 158 (226)
.+||-. .+++.|...|..||.|..+.|+.- + .. || |+|+|-...-
T Consensus 155 a~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykg 234 (445)
T KOG2891|consen 155 AGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKG 234 (445)
T ss_pred cCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHh
Confidence 777742 357889999999999988877532 1 11 11 3444444444
Q ss_pred HHHHHHHcCCccc----ccceeeeEEEEeeecC
Q 027194 159 MKHAIKKLDDSEF----RNAFSRAYVRVREYDH 187 (226)
Q Consensus 159 A~~a~~~l~~~~~----~g~~~~~~i~~~~~~~ 187 (226)
-..|+..|.|..+ .|...+..++++.++.
T Consensus 235 fa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 235 FAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 4445555555444 3444456666666543
No 291
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.38 E-value=1.7e+02 Score=18.81 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEE
Q 027194 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDL 38 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~ 38 (226)
.|+-.+++.+|..||++.|+. || .|..|+.
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 444568899999999999986 44 5556655
No 292
>PRK02302 hypothetical protein; Provisional
Probab=27.29 E-value=1.7e+02 Score=18.70 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=26.7
Q ss_pred HhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 26 ~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
-+..||.|..+.-. ..|+.+ |-+.++|+..++.+....+
T Consensus 22 ~LrkfG~I~Y~Skk-----~kYvvl-Yvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKR-----SRYLVL-YVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEecc-----ccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 34589988766432 346554 8889999999888765443
No 293
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=27.27 E-value=1.7e+02 Score=18.94 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=25.6
Q ss_pred eEEEcCCCCCCCHHHHHHH---hhhcCCeeEEEE-----ecCCCCCceEEEEE
Q 027194 8 TLYVGNLPGDIREREVEDL---FYKYGPIAHIDL-----KIPPRPPGYAFVEF 52 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~---f~~~G~v~~~~~-----~~~~~~~g~afV~f 52 (226)
..|+.+||+++.+.++... +..++.-..|.. .....+.|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 3578899999998886544 444443344443 22345566655543
No 294
>PHA01632 hypothetical protein
Probab=27.03 E-value=1.3e+02 Score=17.22 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=17.3
Q ss_pred EEecCCCCCCCHHHHHHHHHh
Q 027194 111 VLVTGLPSSASWQDLKDHMRR 131 (226)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~ 131 (226)
+.|..+|..-|+++|+..+..
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 567889999999999987754
No 295
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=26.36 E-value=1.3e+02 Score=16.97 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=26.1
Q ss_pred EEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecCC-CCCceEEEEEcCH
Q 027194 10 YVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEA 55 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~-~~~g~afV~f~~~ 55 (226)
.|..-...-.-.+|-.+|..+| .|..+...... .......+.+.+.
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 3333333445677888888886 77777775432 2334444445443
No 296
>PRK02886 hypothetical protein; Provisional
Probab=26.16 E-value=1.8e+02 Score=18.53 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=26.7
Q ss_pred HhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 26 ~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
-+..||.|.-+.-. ..|+.+ |-+.++|+..++.|....+
T Consensus 20 ~LrkyG~I~Y~Skr-----~kYvvl-Yvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKR-----LKYAVL-YCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEecc-----ccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 34589988766432 345554 8889999999888766443
No 297
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=25.77 E-value=1.5e+02 Score=17.34 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHH
Q 027194 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~ 165 (226)
.+++.+.+.....|..+....+...-...|.+.+.++....+..
T Consensus 12 ~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 12 YDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 56788888899999999999988777889999999999888654
No 298
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.54 E-value=1.4e+02 Score=16.91 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCH----HHHHHHHHh
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIRG 64 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~a~~~ 64 (226)
|+.|.|+.-..-...|.+.+...-.|..+.+.. ..+.+-|+|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~---~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL---ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC---CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567777777777888999999998898888863 367888888744 555666653
No 299
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.46 E-value=2.7e+02 Score=20.22 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC
Q 027194 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (226)
Q Consensus 9 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (226)
+-| +|+..+.++-|.++.+-+|.|... . -..-.+.|-+.+..+.|++.+.
T Consensus 115 iRv-~l~~~i~~erl~ei~E~~gvI~Ef---e----e~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 115 IRV-KLKKPIQEERLQEISEWHGVIFEF---E----EDDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred EEE-ecCccchHHHHHHHHHHhceeEEe---c----CCcEEEEeccHHHHHHHHHHHH
Confidence 444 899999999999999999988766 1 1233677999999999998654
No 300
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=25.35 E-value=42 Score=27.31 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=38.7
Q ss_pred CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCC
Q 027194 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (226)
Q Consensus 19 t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (226)
+...|.+++.+.|+|..-.+..+ -+=|.+||-...++++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 35678888889998877666443 22588999999999999999988865
No 301
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=25.29 E-value=1.9e+02 Score=22.28 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-EecCC-----CCCceEEEEEcCHHHHHHHHHhc
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPP-----RPPGYAFVEFEEARDAEDAIRGR 65 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~~~~~-----~~~g~afV~f~~~~~a~~a~~~l 65 (226)
++.|.-||-.-.++-++.+|++.|--..+. +.-+. ....|..|+..-.--...|+..|
T Consensus 120 ~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 120 EVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred EEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 566777888889999999999999433333 32222 22568888888777777787754
No 302
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=24.90 E-value=88 Score=27.71 Aligned_cols=14 Identities=7% Similarity=-0.054 Sum_probs=5.9
Q ss_pred eEEEEEcCHHHHHH
Q 027194 47 YAFVEFEEARDAED 60 (226)
Q Consensus 47 ~afV~f~~~~~a~~ 60 (226)
.++|.=.+-+.+..
T Consensus 63 vvMVNGvsMenv~h 76 (1027)
T KOG3580|consen 63 VVMVNGVSMENVLH 76 (1027)
T ss_pred EEEEcCcchhhhHH
Confidence 44444333344433
No 303
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.86 E-value=11 Score=31.41 Aligned_cols=74 Identities=8% Similarity=-0.111 Sum_probs=52.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..-++..+|...+++++.-+|..||.|..+.+.+ ++..+-.+||...+.+ |...+..+.-..++|..+.+.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~-~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKAN-GPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccC-cccccCHHHHhhhhhhhhhhhcCc
Confidence 4457888999999999999999999998887732 4455668888766543 344444455555667667666654
No 304
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=24.82 E-value=1.9e+02 Score=18.90 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhh-hcCCeeE-EEE--ecC----CCCCceEEEEEcCHHHHHHH
Q 027194 16 GDIREREVEDLFY-KYGPIAH-IDL--KIP----PRPPGYAFVEFEEARDAEDA 61 (226)
Q Consensus 16 ~~~t~~~l~~~f~-~~G~v~~-~~~--~~~----~~~~g~afV~f~~~~~a~~a 61 (226)
+..+..+|++-+. .|+.-.+ |-+ ..+ +.+.|||.| |.+.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 3566777775444 4553222 222 222 355666666 6677666553
No 305
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.46 E-value=2.2e+02 Score=18.86 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCC-CCCEEEEEeCCHHHHHHHHH
Q 027194 122 WQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIK 164 (226)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~-~~~~a~v~f~~~~~A~~a~~ 164 (226)
+.+|..+....|.-.+-.++..+ +.-||++++.+.++...++.
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 45677888888864444333333 34499999997776666554
No 306
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.03 E-value=2e+02 Score=18.31 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=30.3
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEec-------CCCC------CceEEEEEcCHH
Q 027194 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKI-------PPRP------PGYAFVEFEEAR 56 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~-------~~~~------~g~afV~f~~~~ 56 (226)
+.-.+++.+|..||++.++. || .|..|+... .|.. .--|+|++...+
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 44468899999999999885 45 555555522 1111 136888887664
No 307
>PRK15464 cold shock-like protein CspH; Provisional
Probab=23.80 E-value=56 Score=19.77 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.8
Q ss_pred CCCceEEEEEcC
Q 027194 43 RPPGYAFVEFEE 54 (226)
Q Consensus 43 ~~~g~afV~f~~ 54 (226)
..+||+||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 348999997554
No 308
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.58 E-value=86 Score=16.15 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=13.7
Q ss_pred CCCHHHHHHHhhhcCCe
Q 027194 17 DIREREVEDLFYKYGPI 33 (226)
Q Consensus 17 ~~t~~~l~~~f~~~G~v 33 (226)
..+.++|+.++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998744
No 309
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.42 E-value=1.8e+02 Score=17.60 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHHHhhhcC-CeeEEEEec--C-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 21 REVEDLFYKYG-PIAHIDLKI--P-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 21 ~~l~~~f~~~G-~v~~~~~~~--~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++|.+-|..+| .+..+.-+. + ......-+|+.....+... .|+=+.+.|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 777776643 2 3445677777765543333 355567889999998653
No 310
>PHA03075 glutaredoxin-like protein; Provisional
Probab=22.86 E-value=1.8e+02 Score=19.72 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=4.9
Q ss_pred CCCCCceEEEE
Q 027194 41 PPRPPGYAFVE 51 (226)
Q Consensus 41 ~~~~~g~afV~ 51 (226)
++..+..|||.
T Consensus 77 dp~t~qmA~V~ 87 (123)
T PHA03075 77 DPETKQMAFVD 87 (123)
T ss_pred cCCCCcEEEEe
Confidence 33444444444
No 311
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.31 E-value=98 Score=26.88 Aligned_cols=39 Identities=44% Similarity=0.645 Sum_probs=33.9
Q ss_pred CceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 45 PGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
..|+++.|+++..+.+|+..++|..+.+..+.+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 579999999999999999999999988888777766543
No 312
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=22.18 E-value=2.9e+02 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.1
Q ss_pred CCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 43 RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 43 ~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
.-+||.|||=..+..+..|++.+-+.+.. +.+.|
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 45899999999999999999999887776 44433
No 313
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.36 E-value=77 Score=19.41 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.0
Q ss_pred CCCceEEEEEc
Q 027194 43 RPPGYAFVEFE 53 (226)
Q Consensus 43 ~~~g~afV~f~ 53 (226)
..+||+||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 34899999643
No 314
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.33 E-value=2.5e+02 Score=21.06 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.6
Q ss_pred CCHHHHHHHhhhcCC---eeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 18 ~t~~~l~~~f~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
.|.+++.+....+|. |...++..-|..|+=+...-.++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888887764 444445555666764444456889999998888776664
No 315
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=21.29 E-value=1.5e+02 Score=15.93 Aligned_cols=40 Identities=33% Similarity=0.558 Sum_probs=27.8
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
++++++.++.++|.+.-...|. .++...++..|-..++.+
T Consensus 1 L~~~dyPa~k~~Lv~~A~~~gA---------------------~~~vl~~L~~lP~~~Y~s 40 (44)
T PF11387_consen 1 LKGVDYPADKDELVRHARRNGA---------------------PDDVLDALERLPDREYES 40 (44)
T ss_pred CCCCCCCCCHHHHHHHHHHcCC---------------------CHHHHHHHHHCCccCCCC
Confidence 3578888999999988888775 345566666666555443
No 316
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.29 E-value=75 Score=18.55 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=9.1
Q ss_pred CCceEEEEEcCH
Q 027194 44 PPGYAFVEFEEA 55 (226)
Q Consensus 44 ~~g~afV~f~~~ 55 (226)
.+||+||+-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 389999987653
No 317
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=21.26 E-value=75 Score=18.95 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred CCceEEEEEcCH-HHH---HHHHHhcCC--CCCCCceEEEEEccC
Q 027194 44 PPGYAFVEFEEA-RDA---EDAIRGRDG--YDFDGHRLRVELAHG 82 (226)
Q Consensus 44 ~~g~afV~f~~~-~~a---~~a~~~l~~--~~~~g~~i~v~~~~~ 82 (226)
.+||+||+=.+. +++ ..++. ..+ ..-.|..+.......
T Consensus 12 ~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~ 55 (68)
T TIGR02381 12 AKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQG 55 (68)
T ss_pred CCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEEC
Confidence 389999976552 222 22333 122 233467777766543
No 318
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.24 E-value=1.8e+02 Score=16.75 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=28.6
Q ss_pred CHHHHHHHhhhcC-CeeEEEEecCC-CCCceEEEEEcCHHHHHHHHHhc
Q 027194 19 REREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIRGR 65 (226)
Q Consensus 19 t~~~l~~~f~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~a~~~l 65 (226)
.-.+|-.+|..+| .|..+...... ...+...+.+...++...+.+.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888888887 67777654321 12566677776555555555544
No 319
>PRK10943 cold shock-like protein CspC; Provisional
Probab=21.17 E-value=73 Score=19.12 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=19.0
Q ss_pred CCCceEEEEEcCHH-HH---HHHHHhcC-CCCCCCceEEEEEcc
Q 027194 43 RPPGYAFVEFEEAR-DA---EDAIRGRD-GYDFDGHRLRVELAH 81 (226)
Q Consensus 43 ~~~g~afV~f~~~~-~a---~~a~~~l~-~~~~~g~~i~v~~~~ 81 (226)
..+||+||+=.+-. ++ ..|+..-. .....|..+......
T Consensus 13 ~~kGfGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~ 56 (69)
T PRK10943 13 ESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQD 56 (69)
T ss_pred CCCCcEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEE
Confidence 34899999754422 22 22333111 123346666666554
No 320
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.11 E-value=73 Score=19.12 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.3
Q ss_pred CCceEEEEEcC
Q 027194 44 PPGYAFVEFEE 54 (226)
Q Consensus 44 ~~g~afV~f~~ 54 (226)
.+||+||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 48999997544
No 321
>PRK10905 cell division protein DamX; Validated
Probab=20.73 E-value=3.2e+02 Score=22.24 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=37.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC--EEE--EEeCCHHHHHHHHHHcCCcc
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT--TGI--VDYTNYDDMKHAIKKLDDSE 170 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~--v~f~~~~~A~~a~~~l~~~~ 170 (226)
.++|-|.. .-+++.|.++..++|.-.+..+....++. |.. =.|.+.++|..|+..|-...
T Consensus 247 ~YTLQL~A---~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 247 HYTLQLSS---SSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred ceEEEEEe---cCCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 34555544 34668888888888643344333333332 333 36899999999999876544
No 322
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.50 E-value=1.8e+02 Score=16.33 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHhhhcC-CeeEEEEecCC-CCCceEEEEEcCHHHHHHHHH
Q 027194 21 REVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 21 ~~l~~~f~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~a~~ 63 (226)
.+|-..|..+| +|..+...... .......+...+.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 45666677775 77666654332 234455555667666666666
No 323
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=20.48 E-value=2.1e+02 Score=21.71 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=25.2
Q ss_pred EEcCCCCCCCHHHH--------HHHhhhcCCeeEEEEecCCCCCceEEEEEcCH
Q 027194 10 YVGNLPGDIREREV--------EDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (226)
Q Consensus 10 ~v~nlp~~~t~~~l--------~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (226)
++-.||..+|.++- ..+|..+|-+.++-|..++.....|-|.|.+-
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R 124 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTR 124 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecC
Confidence 44589999998873 33344568888888875544455777766543
No 324
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=20.38 E-value=2.6e+02 Score=23.50 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHhh----hcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhc
Q 027194 16 GDIREREVEDLFY----KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGR 65 (226)
Q Consensus 16 ~~~t~~~l~~~f~----~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l 65 (226)
+..+--+|..+|. .+|-|..+.+.. -+......++.|.+.++|..|+..+
T Consensus 142 ~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 142 KDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 3444446777775 377888877733 3444567788999999999998654
No 325
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.13 E-value=86 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=8.5
Q ss_pred CCCceEEEEEcC
Q 027194 43 RPPGYAFVEFEE 54 (226)
Q Consensus 43 ~~~g~afV~f~~ 54 (226)
..+||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 348999997543
No 326
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.00 E-value=77 Score=19.14 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=18.7
Q ss_pred CCceEEEEEcCH-HHH---HHHHHhc-CCCCCCCceEEEEEcc
Q 027194 44 PPGYAFVEFEEA-RDA---EDAIRGR-DGYDFDGHRLRVELAH 81 (226)
Q Consensus 44 ~~g~afV~f~~~-~~a---~~a~~~l-~~~~~~g~~i~v~~~~ 81 (226)
.+||+||+=.+- +++ ..|+..- ....-.|..+......
T Consensus 15 ~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~ 57 (70)
T PRK15463 15 KSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRIN 57 (70)
T ss_pred CCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEE
Confidence 389999975442 122 1233311 1223346666666554
Done!