Query 027194
Match_columns 226
No_of_seqs 179 out of 2015
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 100.0 5.6E-35 1.9E-39 217.8 19.8 179 3-183 1-202 (205)
2 4f02_A Polyadenylate-binding p 100.0 3.5E-35 1.2E-39 220.9 16.4 163 4-187 13-180 (213)
3 1fxl_A Paraneoplastic encephal 100.0 7.5E-34 2.6E-38 205.5 20.4 155 5-178 1-162 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 5.9E-34 2E-38 205.8 19.7 158 7-185 1-164 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.2E-33 4E-38 204.8 20.2 150 5-173 2-158 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 8.5E-34 2.9E-38 210.5 19.5 167 4-189 11-184 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 6.4E-33 2.2E-37 217.1 24.0 179 2-185 5-280 (282)
8 2adc_A Polypyrimidine tract-bi 100.0 6.5E-33 2.2E-37 210.7 21.5 177 3-186 31-226 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 1.8E-32 6.2E-37 203.7 22.1 177 4-188 2-194 (198)
10 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-32 3.8E-37 205.0 19.6 170 5-177 2-190 (198)
11 2qfj_A FBP-interacting repress 100.0 1.7E-32 5.7E-37 206.6 20.3 171 5-187 27-204 (216)
12 2g4b_A Splicing factor U2AF 65 100.0 2.7E-32 9.3E-37 198.4 19.1 150 4-176 2-166 (172)
13 3nmr_A Cugbp ELAV-like family 100.0 2.3E-32 8E-37 199.2 18.8 151 5-173 2-163 (175)
14 1fje_B Nucleolin RBD12, protei 100.0 3.8E-33 1.3E-37 203.5 12.3 162 3-187 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 8.4E-33 2.9E-37 200.1 12.3 158 4-187 1-165 (167)
16 2ghp_A U4/U6 snRNA-associated 100.0 4.5E-31 1.5E-35 207.6 17.9 166 5-187 116-290 (292)
17 3smz_A Protein raver-1, ribonu 100.0 3.3E-30 1.1E-34 201.8 21.2 151 4-187 20-174 (284)
18 3sde_A Paraspeckle component 1 100.0 1.1E-30 3.7E-35 202.1 17.3 141 4-172 20-163 (261)
19 3smz_A Protein raver-1, ribonu 100.0 2.1E-30 7.2E-35 203.0 18.8 164 4-187 93-263 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-30 7.4E-35 203.7 17.9 153 4-187 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.3E-24 4.4E-29 147.3 9.4 109 5-124 4-113 (115)
22 3lqv_A PRE-mRNA branch site pr 99.9 4.4E-23 1.5E-27 139.9 8.6 106 2-134 4-109 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-22 7.1E-27 132.6 9.4 78 5-82 18-98 (99)
24 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-21 5.5E-26 139.5 14.2 139 42-190 10-152 (158)
25 2i2y_A Fusion protein consists 99.9 4.3E-22 1.5E-26 141.3 10.7 137 42-187 10-147 (150)
26 2hvz_A Splicing factor, argini 99.9 9.1E-22 3.1E-26 130.3 10.6 100 7-117 1-100 (101)
27 1x4a_A Splicing factor, argini 99.9 2.7E-21 9.1E-26 129.8 11.9 83 3-85 19-101 (109)
28 2fy1_A RNA-binding motif prote 99.9 5.1E-21 1.7E-25 129.7 13.2 86 1-86 2-89 (116)
29 2lxi_A RNA-binding protein 10; 99.9 5.4E-22 1.9E-26 128.6 7.6 80 6-85 1-85 (91)
30 1sjq_A Polypyrimidine tract-bi 99.9 1.5E-21 5E-26 128.5 9.6 81 2-85 12-94 (105)
31 3beg_B Splicing factor, argini 99.9 1.1E-21 3.8E-26 132.7 9.1 79 106-187 14-93 (115)
32 3r27_A HnRNP L, heterogeneous 99.9 3.1E-21 1.1E-25 125.7 10.3 78 3-83 18-97 (100)
33 2dnz_A Probable RNA-binding pr 99.9 1.2E-20 4.1E-25 123.4 12.9 82 4-85 3-87 (95)
34 1whw_A Hypothetical protein ri 99.9 1.2E-20 4.2E-25 124.3 12.6 83 3-85 5-90 (99)
35 2a3j_A U1 small nuclear ribonu 99.9 7.7E-21 2.6E-25 130.2 11.4 82 3-84 26-111 (127)
36 3s8s_A Histone-lysine N-methyl 99.9 3.8E-21 1.3E-25 128.9 9.5 79 4-82 4-85 (110)
37 2cpf_A RNA binding motif prote 99.8 5.3E-21 1.8E-25 125.8 9.9 84 3-86 2-91 (98)
38 2dgs_A DAZ-associated protein 99.8 1.8E-20 6.2E-25 123.5 12.5 82 3-85 7-91 (99)
39 2wbr_A GW182, gawky, LD47780P; 99.8 5.5E-21 1.9E-25 120.2 9.2 74 4-80 5-78 (89)
40 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.2E-20 7.5E-25 124.0 12.6 83 3-85 12-95 (103)
41 2x1f_A MRNA 3'-END-processing 99.8 7.7E-21 2.6E-25 124.6 10.2 80 5-84 1-83 (96)
42 2lkz_A RNA-binding protein 5; 99.8 3.1E-21 1.1E-25 125.6 8.1 79 4-82 7-94 (95)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.5E-21 2.6E-25 126.0 10.1 83 4-86 10-95 (102)
44 2dnm_A SRP46 splicing factor; 99.8 1.1E-20 3.8E-25 125.5 10.9 82 4-85 11-95 (103)
45 2ad9_A Polypyrimidine tract-bi 99.8 9.9E-21 3.4E-25 127.6 10.6 81 3-86 28-110 (119)
46 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-20 5.9E-25 124.3 11.5 82 4-85 10-94 (102)
47 1nu4_A U1A RNA binding domain; 99.8 2.9E-21 9.9E-26 126.9 7.5 84 1-84 3-90 (97)
48 1x5u_A Splicing factor 3B subu 99.8 2.4E-20 8.4E-25 124.2 11.9 82 4-85 13-97 (105)
49 2d9p_A Polyadenylate-binding p 99.8 1.8E-20 6.1E-25 124.4 11.2 83 3-85 12-95 (103)
50 2cq1_A PTB-like protein L; RRM 99.8 2.4E-20 8.3E-25 122.7 11.6 80 3-85 12-93 (101)
51 1x5t_A Splicing factor 3B subu 99.8 1.6E-20 5.4E-25 123.1 10.7 82 4-85 3-88 (96)
52 1x4d_A Matrin 3; structural ge 99.8 6.4E-21 2.2E-25 125.3 8.7 79 3-84 12-93 (102)
53 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-20 6.4E-25 122.7 11.0 81 4-84 7-91 (96)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.4E-21 3.2E-25 121.3 9.2 79 3-81 4-85 (85)
55 3md1_A Nuclear and cytoplasmic 99.8 1.2E-20 4.2E-25 120.2 9.7 78 6-83 1-81 (83)
56 2cq3_A RNA-binding protein 9; 99.8 4.4E-20 1.5E-24 122.5 12.6 84 3-86 12-96 (103)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 1E-20 3.5E-25 121.7 9.1 79 4-82 4-85 (87)
58 1wex_A Hypothetical protein (r 99.8 3E-20 1E-24 123.0 11.4 79 4-85 13-93 (104)
59 2dgv_A HnRNP M, heterogeneous 99.8 2.1E-20 7.1E-25 121.5 10.5 83 3-85 5-88 (92)
60 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-20 6.3E-25 122.3 10.2 78 4-81 14-94 (94)
61 2dnq_A RNA-binding protein 4B; 99.8 4.5E-20 1.5E-24 119.4 11.8 78 3-85 5-82 (90)
62 2dgo_A Cytotoxic granule-assoc 99.8 5.7E-20 2E-24 124.4 12.8 84 4-87 13-99 (115)
63 2cph_A RNA binding motif prote 99.8 5.4E-20 1.9E-24 122.9 12.1 83 3-85 12-99 (107)
64 1wi8_A EIF-4B, eukaryotic tran 99.8 3.6E-20 1.2E-24 123.2 11.1 81 3-85 12-96 (104)
65 2do4_A Squamous cell carcinoma 99.8 3.1E-20 1.1E-24 122.6 10.6 81 4-84 15-97 (100)
66 2dgu_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 121.4 12.5 79 4-87 9-87 (103)
67 1x4f_A Matrin 3; structural ge 99.8 1.3E-20 4.4E-25 125.6 8.7 81 2-85 21-104 (112)
68 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-20 9.1E-25 126.1 10.4 83 3-85 22-107 (115)
69 2cq0_A Eukaryotic translation 99.8 1.8E-20 6.1E-25 124.4 9.1 82 4-85 13-97 (103)
70 2dgp_A Bruno-like 4, RNA bindi 99.8 6.3E-20 2.2E-24 122.4 11.8 83 3-85 10-98 (106)
71 4a8x_A RNA-binding protein wit 99.8 2.8E-20 9.6E-25 119.9 9.7 80 4-83 2-85 (88)
72 2div_A TRNA selenocysteine ass 99.8 2.1E-20 7.1E-25 123.2 9.2 83 2-84 5-95 (99)
73 1p27_B RNA-binding protein 8A; 99.8 2.2E-20 7.6E-25 124.6 9.5 80 4-83 21-103 (106)
74 1x4h_A RNA-binding protein 28; 99.8 6.6E-20 2.3E-24 123.3 11.6 82 4-85 13-103 (111)
75 2dgt_A RNA-binding protein 30; 99.8 7.9E-20 2.7E-24 118.8 11.4 78 3-85 7-84 (92)
76 2dnh_A Bruno-like 5, RNA bindi 99.8 5.5E-20 1.9E-24 122.5 10.9 82 4-85 13-99 (105)
77 2cqd_A RNA-binding region cont 99.8 1.5E-19 5.2E-24 122.5 13.2 82 3-85 14-98 (116)
78 1x4c_A Splicing factor, argini 99.8 1.1E-19 3.8E-24 121.6 12.3 78 4-85 13-95 (108)
79 2do0_A HnRNP M, heterogeneous 99.8 1.1E-19 3.9E-24 122.8 12.4 83 3-85 12-96 (114)
80 2cqc_A Arginine/serine-rich sp 99.8 2.1E-20 7.3E-25 122.2 8.4 78 4-81 13-93 (95)
81 2dnp_A RNA-binding protein 14; 99.8 7.8E-20 2.7E-24 118.3 10.9 78 3-85 6-83 (90)
82 1why_A Hypothetical protein ri 99.8 8.5E-20 2.9E-24 119.8 11.2 78 4-84 15-94 (97)
83 1s79_A Lupus LA protein; RRM, 99.8 3.5E-20 1.2E-24 122.6 9.3 78 4-82 9-88 (103)
84 3p5t_L Cleavage and polyadenyl 99.8 5.6E-21 1.9E-25 123.7 5.2 79 7-85 2-85 (90)
85 2ywk_A Putative RNA-binding pr 99.8 3.5E-20 1.2E-24 121.2 8.7 79 3-81 13-93 (95)
86 2kxn_B Transformer-2 protein h 99.8 3.7E-20 1.3E-24 127.6 9.1 82 3-84 43-127 (129)
87 3pgw_S U1-70K; protein-RNA com 99.8 4.2E-19 1.4E-23 145.9 16.9 82 4-85 100-184 (437)
88 2jvr_A Nucleolar protein 3; RN 99.8 4.6E-20 1.6E-24 123.3 9.2 79 4-83 26-105 (111)
89 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-19 4.5E-24 121.5 11.5 80 3-85 22-101 (109)
90 1x4c_A Splicing factor, argini 99.8 4.2E-19 1.4E-23 118.7 13.9 82 103-187 10-92 (108)
91 2dhg_A TRNA selenocysteine ass 99.8 8.2E-20 2.8E-24 121.4 10.4 83 3-85 6-92 (104)
92 2cpx_A Hypothetical protein FL 99.8 9E-20 3.1E-24 123.5 10.6 82 4-86 23-108 (115)
93 2la6_A RNA-binding protein FUS 99.8 5.7E-20 1.9E-24 121.1 9.4 79 3-81 10-99 (99)
94 2dng_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 120.6 10.8 81 3-85 12-95 (103)
95 2jrs_A RNA-binding protein 39; 99.8 5.6E-20 1.9E-24 122.9 9.3 81 3-83 23-106 (108)
96 2cpe_A RNA-binding protein EWS 99.8 8.6E-20 3E-24 123.2 10.2 83 3-85 12-105 (113)
97 2cpj_A Non-POU domain-containi 99.8 1.3E-19 4.6E-24 119.3 10.9 78 4-84 13-90 (99)
98 2khc_A Testis-specific RNP-typ 99.8 5.3E-20 1.8E-24 125.2 9.0 79 3-81 37-118 (118)
99 3ns6_A Eukaryotic translation 99.8 2.6E-20 8.7E-25 122.9 7.1 79 4-82 4-92 (100)
100 3ulh_A THO complex subunit 4; 99.8 7.2E-20 2.5E-24 122.3 9.4 78 4-81 27-106 (107)
101 1oo0_B CG8781-PA, drosophila Y 99.8 7.3E-20 2.5E-24 122.9 9.4 80 4-83 24-106 (110)
102 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-19 5.6E-24 126.3 11.4 83 4-86 40-125 (139)
103 2err_A Ataxin-2-binding protei 99.8 9.1E-20 3.1E-24 122.2 9.4 80 4-83 27-107 (109)
104 2xnq_A Nuclear polyadenylated 99.8 1.7E-19 5.7E-24 118.3 10.4 75 3-82 19-94 (97)
105 2nlw_A Eukaryotic translation 99.8 9.3E-20 3.2E-24 121.3 9.2 81 3-83 12-100 (105)
106 3s7r_A Heterogeneous nuclear r 99.8 1.3E-19 4.3E-24 116.6 9.5 77 3-80 8-87 (87)
107 2kt5_A RNA and export factor-b 99.8 3E-19 1E-23 122.5 11.9 82 4-85 33-116 (124)
108 3ex7_B RNA-binding protein 8A; 99.8 1.1E-19 3.9E-24 125.0 9.8 83 4-86 20-105 (126)
109 2cpi_A CCR4-NOT transcription 99.8 6.8E-20 2.3E-24 123.2 8.5 81 4-84 13-102 (111)
110 2kvi_A Nuclear polyadenylated 99.8 1E-19 3.4E-24 119.2 9.1 78 3-85 7-85 (96)
111 2dis_A Unnamed protein product 99.8 4E-19 1.4E-23 119.1 12.2 83 3-85 5-94 (109)
112 2ytc_A PRE-mRNA-splicing facto 99.8 1.2E-19 4E-24 116.2 9.1 76 3-81 9-85 (85)
113 1whx_A Hypothetical protein ri 99.8 1.2E-19 4.1E-24 121.9 9.5 78 4-84 8-85 (111)
114 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-19 7E-24 120.4 10.6 80 4-84 23-105 (109)
115 3ucg_A Polyadenylate-binding p 99.8 1.7E-19 5.8E-24 116.4 9.8 77 5-82 5-84 (89)
116 2cpd_A Apobec-1 stimulating pr 99.8 3.3E-19 1.1E-23 117.4 11.3 77 4-85 13-91 (99)
117 2fc9_A NCL protein; structure 99.8 1E-19 3.6E-24 120.3 8.9 81 4-85 13-93 (101)
118 2krb_A Eukaryotic translation 99.8 5.1E-20 1.8E-24 116.7 7.1 72 6-77 1-80 (81)
119 2dh8_A DAZ-associated protein 99.8 8.8E-20 3E-24 121.5 8.2 82 3-85 13-97 (105)
120 2jvo_A Nucleolar protein 3; nu 99.8 1.7E-19 5.8E-24 120.5 9.4 77 3-84 28-104 (108)
121 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-19 4.3E-24 118.0 8.4 79 3-85 5-85 (93)
122 2e5j_A Methenyltetrahydrofolat 99.8 1.9E-19 6.5E-24 118.1 9.1 79 4-84 17-95 (97)
123 2cq2_A Hypothetical protein LO 99.8 2.8E-19 9.7E-24 119.2 9.9 79 2-83 21-106 (114)
124 1p1t_A Cleavage stimulation fa 99.8 9.1E-20 3.1E-24 121.2 7.5 81 4-84 6-89 (104)
125 3pgw_S U1-70K; protein-RNA com 99.8 1.3E-19 4.5E-24 148.9 10.0 75 106-180 100-178 (437)
126 3n9u_C Cleavage and polyadenyl 99.8 1.7E-19 5.9E-24 128.2 9.4 77 5-81 54-135 (156)
127 1x4e_A RNA binding motif, sing 99.8 3.2E-20 1.1E-24 118.9 4.8 78 3-80 2-82 (85)
128 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.8E-19 1.3E-23 126.8 10.8 82 4-85 37-121 (156)
129 2kn4_A Immunoglobulin G-bindin 99.8 5E-19 1.7E-23 126.5 11.3 82 4-85 68-152 (158)
130 2cqg_A TDP-43, TAR DNA-binding 99.8 5.9E-19 2E-23 117.1 10.9 81 3-85 12-95 (103)
131 2m2b_A RNA-binding protein 10; 99.8 2.2E-19 7.7E-24 124.3 9.1 82 3-85 20-110 (131)
132 2mss_A Protein (musashi1); RNA 99.8 1.3E-19 4.6E-24 113.1 7.2 72 8-80 1-75 (75)
133 1fjc_A Nucleolin RBD2, protein 99.8 9.5E-20 3.2E-24 119.3 6.7 79 4-84 14-92 (96)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-19 4.7E-24 119.4 7.5 78 4-83 17-98 (100)
135 2ki2_A SS-DNA binding protein 99.8 6E-20 2E-24 118.8 5.5 78 7-85 2-82 (90)
136 2cqp_A RNA-binding protein 12; 99.8 9.1E-20 3.1E-24 119.9 6.5 79 4-82 13-94 (98)
137 2ek1_A RNA-binding protein 12; 99.8 6.9E-20 2.4E-24 119.8 5.7 78 4-81 13-93 (95)
138 2lea_A Serine/arginine-rich sp 99.8 2.1E-19 7.3E-24 124.8 8.5 82 4-85 45-129 (135)
139 1wf1_A RNA-binding protein RAL 99.8 4.5E-19 1.6E-23 119.0 9.8 75 5-84 26-101 (110)
140 2la4_A Nuclear and cytoplasmic 99.8 2.3E-19 7.7E-24 118.6 8.1 76 4-82 25-100 (101)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-19 6E-24 113.1 7.2 73 7-80 1-76 (77)
142 2fc8_A NCL protein; structure 99.8 3.6E-19 1.2E-23 117.9 9.0 83 3-85 12-94 (102)
143 3egn_A RNA-binding protein 40; 99.8 1.6E-19 5.5E-24 126.9 7.7 82 3-84 42-131 (143)
144 1wg5_A Heterogeneous nuclear r 99.8 9.3E-19 3.2E-23 116.2 11.0 79 4-83 13-94 (104)
145 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.2E-19 1.4E-23 124.3 9.7 78 3-80 60-140 (140)
146 1x4b_A Heterogeneous nuclear r 99.8 6.9E-19 2.4E-23 119.2 10.1 80 5-85 26-108 (116)
147 2dgw_A Probable RNA-binding pr 99.8 7.1E-19 2.4E-23 114.0 9.6 78 4-83 8-87 (91)
148 2i2y_A Fusion protein consists 99.8 7.1E-19 2.4E-23 124.6 10.1 78 4-83 71-148 (150)
149 1x5o_A RNA binding motif, sing 99.8 7.6E-19 2.6E-23 118.7 9.6 79 4-82 23-111 (114)
150 2cpy_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 120.1 7.8 80 3-83 12-94 (114)
151 2cq4_A RNA binding motif prote 99.8 5.9E-19 2E-23 119.2 8.5 77 5-82 24-103 (114)
152 1wg1_A KIAA1579 protein, homol 99.8 8.2E-19 2.8E-23 112.9 8.8 78 3-84 2-79 (88)
153 1fj7_A Nucleolin RBD1, protein 99.8 1.4E-19 4.8E-24 119.6 5.2 80 4-84 15-96 (101)
154 2jwn_A Embryonic polyadenylate 99.8 1.3E-18 4.5E-23 119.3 10.1 79 5-84 35-116 (124)
155 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.5E-23 126.5 9.2 82 4-85 70-154 (165)
156 1wez_A HnRNP H', FTP-3, hetero 99.8 9.9E-19 3.4E-23 115.5 8.8 79 4-84 13-93 (102)
157 1iqt_A AUF1, heterogeneous nuc 99.8 3.9E-19 1.3E-23 111.0 6.5 72 8-80 1-75 (75)
158 2diu_A KIAA0430 protein; struc 99.8 3.3E-18 1.1E-22 108.5 10.6 75 4-85 6-86 (96)
159 2db1_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 120.6 6.8 77 4-81 15-96 (118)
160 3beg_B Splicing factor, argini 99.8 1.6E-18 5.5E-23 117.1 9.7 76 4-83 14-94 (115)
161 2hgl_A HNRPF protein, heteroge 99.8 4.4E-19 1.5E-23 122.9 6.9 77 4-81 42-123 (136)
162 2f3j_A RNA and export factor b 99.8 2E-18 6.7E-23 125.3 10.4 79 4-82 86-166 (177)
163 1x5p_A Negative elongation fac 99.8 5E-18 1.7E-22 111.3 11.4 77 4-85 13-89 (97)
164 2e44_A Insulin-like growth fac 99.8 3E-18 1E-22 112.1 10.3 79 4-83 13-92 (96)
165 2e5g_A U6 snRNA-specific termi 99.8 2.7E-18 9.1E-23 111.9 9.7 78 4-84 6-83 (94)
166 1wel_A RNA-binding protein 12; 99.8 1.1E-18 3.8E-23 119.6 7.7 77 4-81 23-102 (124)
167 2dnn_A RNA-binding protein 12; 99.8 2.5E-18 8.6E-23 114.6 8.8 74 6-81 16-91 (109)
168 2lmi_A GRSF-1, G-rich sequence 99.8 8.2E-19 2.8E-23 117.1 6.4 78 3-81 8-90 (107)
169 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-18 1.8E-22 121.9 11.0 134 50-187 11-151 (165)
170 4fxv_A ELAV-like protein 1; RN 99.8 9.5E-18 3.3E-22 110.2 10.9 77 107-187 18-98 (99)
171 2hzc_A Splicing factor U2AF 65 99.8 3.5E-18 1.2E-22 109.7 8.5 73 3-79 3-86 (87)
172 2lea_A Serine/arginine-rich sp 99.8 2.6E-18 8.9E-23 119.3 8.1 119 45-187 4-126 (135)
173 3q2s_C Cleavage and polyadenyl 99.8 2.2E-18 7.6E-23 130.1 8.2 77 5-81 67-148 (229)
174 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-17 5.6E-22 117.3 11.9 77 7-84 47-125 (164)
175 2dha_A FLJ20171 protein; RRM d 99.7 8.8E-19 3E-23 119.2 5.0 77 4-81 21-103 (123)
176 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 110.7 12.8 79 106-188 5-86 (116)
177 2hgn_A Heterogeneous nuclear r 99.7 1.4E-18 4.9E-23 120.6 6.1 79 4-84 44-124 (139)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 3.6E-18 1.2E-22 109.9 7.3 79 3-85 2-80 (88)
179 2pe8_A Splicing factor 45; RRM 99.7 1.2E-17 4.1E-22 110.6 9.8 80 2-81 4-92 (105)
180 2hgm_A HNRPF protein, heteroge 99.7 4.5E-18 1.5E-22 116.0 7.8 76 4-81 40-119 (126)
181 2lcw_A RNA-binding protein FUS 99.6 1.2E-19 4.2E-24 123.0 0.0 83 3-85 4-97 (116)
182 3d2w_A TAR DNA-binding protein 99.7 1.1E-17 3.7E-22 107.7 8.7 74 4-83 9-84 (89)
183 3zzy_A Polypyrimidine tract-bi 99.7 1.2E-17 4E-22 113.9 9.3 75 8-84 30-107 (130)
184 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-17 3.6E-22 111.8 8.8 79 105-187 25-104 (111)
185 2e5i_A Heterogeneous nuclear r 99.7 3E-17 1E-21 111.4 10.3 77 5-84 22-103 (124)
186 2xs2_A Deleted in azoospermia- 99.7 3.4E-18 1.2E-22 113.2 5.4 78 4-83 7-86 (102)
187 3ex7_B RNA-binding protein 8A; 99.7 3.9E-17 1.3E-21 112.2 10.7 74 105-178 19-96 (126)
188 2dnl_A Cytoplasmic polyadenyla 99.7 4.8E-17 1.6E-21 109.7 10.8 74 3-79 5-84 (114)
189 2qfj_A FBP-interacting repress 99.7 3.4E-17 1.2E-21 122.7 10.9 82 4-85 123-207 (216)
190 2bz2_A Negative elongation fac 99.7 2.9E-17 9.8E-22 111.8 9.4 76 4-84 37-112 (121)
191 1x4a_A Splicing factor, argini 99.7 2.6E-16 8.9E-21 105.3 14.0 85 103-191 17-102 (109)
192 3md3_A Nuclear and cytoplasmic 99.7 2.6E-17 8.9E-22 118.1 9.6 79 3-81 84-165 (166)
193 2dnm_A SRP46 splicing factor; 99.7 7.8E-17 2.7E-21 106.7 10.5 85 103-191 8-96 (103)
194 2cq3_A RNA-binding protein 9; 99.7 4E-16 1.4E-20 103.3 13.9 84 103-190 10-95 (103)
195 2d9p_A Polyadenylate-binding p 99.7 1.3E-16 4.6E-21 105.6 11.4 83 103-189 10-94 (103)
196 2cqi_A Nucleolysin TIAR; RNA r 99.7 5E-16 1.7E-20 102.8 14.1 83 104-190 11-95 (103)
197 1sjq_A Polypyrimidine tract-bi 99.7 9.9E-17 3.4E-21 105.4 10.5 78 105-188 13-92 (105)
198 4f02_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 122.8 9.1 78 5-82 102-180 (213)
199 2dnz_A Probable RNA-binding pr 99.7 2.2E-16 7.6E-21 102.9 11.7 82 106-191 3-88 (95)
200 2wbr_A GW182, gawky, LD47780P; 99.7 1.5E-16 5.1E-21 100.0 10.1 73 107-185 6-78 (89)
201 3u1l_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 123.4 8.4 79 4-85 132-231 (240)
202 1whw_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 102.7 12.6 82 106-191 6-91 (99)
203 2cpz_A CUG triplet repeat RNA- 99.7 5.7E-16 1.9E-20 104.6 13.8 84 104-191 21-108 (115)
204 2dit_A HIV TAT specific factor 99.7 1.4E-16 4.8E-21 107.1 10.6 80 4-84 13-103 (112)
205 2dnq_A RNA-binding protein 4B; 99.7 3.2E-16 1.1E-20 101.2 11.8 79 105-191 5-83 (90)
206 2dgo_A Cytotoxic granule-assoc 99.7 1.2E-15 4.1E-20 103.0 15.1 84 103-190 10-97 (115)
207 2dgs_A DAZ-associated protein 99.7 3.3E-16 1.1E-20 102.9 11.9 83 104-191 6-92 (99)
208 2cq0_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 103.6 12.0 84 104-191 11-98 (103)
209 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.1E-16 7.2E-21 104.4 10.7 83 105-191 9-95 (102)
210 1fje_B Nucleolin RBD12, protei 99.7 4.4E-17 1.5E-21 118.2 8.1 77 4-82 97-173 (175)
211 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-16 1.1E-20 103.5 11.6 79 105-187 9-91 (102)
212 2dgt_A RNA-binding protein 30; 99.7 4.9E-16 1.7E-20 100.7 12.2 80 104-191 6-85 (92)
213 4f25_A Polyadenylate-binding p 99.7 1.5E-16 5.3E-21 107.4 10.1 77 107-187 4-82 (115)
214 3s8s_A Histone-lysine N-methyl 99.7 2.1E-16 7E-21 105.7 10.5 77 106-186 4-84 (110)
215 2cjk_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 117.1 7.9 77 5-82 86-165 (167)
216 2div_A TRNA selenocysteine ass 99.7 3.3E-16 1.1E-20 102.9 11.4 85 106-190 7-96 (99)
217 2cph_A RNA binding motif prote 99.7 6.3E-16 2.2E-20 103.0 12.7 82 104-189 11-98 (107)
218 2dng_A Eukaryotic translation 99.7 7.3E-16 2.5E-20 102.0 12.8 83 103-191 10-96 (103)
219 2cpf_A RNA binding motif prote 99.7 3E-16 1E-20 102.9 10.8 80 107-190 4-90 (98)
220 4a8x_A RNA-binding protein wit 99.7 2.3E-16 7.9E-21 101.3 10.0 77 107-187 3-84 (88)
221 1wi8_A EIF-4B, eukaryotic tran 99.7 4.7E-16 1.6E-20 103.1 11.8 83 103-191 10-97 (104)
222 2g4b_A Splicing factor U2AF 65 99.7 6.5E-17 2.2E-21 116.9 8.2 76 5-80 93-171 (172)
223 2yh0_A Splicing factor U2AF 65 99.7 1.1E-16 3.6E-21 118.4 9.4 81 4-84 112-195 (198)
224 2e5j_A Methenyltetrahydrofolat 99.7 4.6E-16 1.6E-20 101.8 11.2 79 104-187 15-93 (97)
225 2dgu_A Heterogeneous nuclear r 99.7 1.3E-15 4.3E-20 100.8 13.4 76 106-189 9-84 (103)
226 2dgx_A KIAA0430 protein; RRM d 99.7 6.5E-16 2.2E-20 100.9 11.8 79 106-188 7-90 (96)
227 1x4g_A Nucleolysin TIAR; struc 99.7 5.4E-16 1.9E-20 103.7 11.6 80 106-191 23-102 (109)
228 1x4d_A Matrin 3; structural ge 99.7 2.6E-16 8.7E-21 103.3 9.7 76 106-187 13-91 (102)
229 1x4h_A RNA-binding protein 28; 99.7 1.1E-15 3.7E-20 102.6 13.1 84 104-191 11-104 (111)
230 2cqc_A Arginine/serine-rich sp 99.7 1E-15 3.4E-20 99.8 12.6 80 103-186 10-93 (95)
231 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-16 5.8E-21 114.2 9.7 77 4-80 87-168 (168)
232 1why_A Hypothetical protein ri 99.7 7.8E-16 2.7E-20 100.7 11.9 78 105-188 14-93 (97)
233 2cq1_A PTB-like protein L; RRM 99.7 1.1E-15 3.7E-20 100.4 12.5 78 104-187 11-90 (101)
234 2dgp_A Bruno-like 4, RNA bindi 99.7 5.5E-16 1.9E-20 103.1 11.3 84 104-191 9-99 (106)
235 2do4_A Squamous cell carcinoma 99.7 1.7E-15 5.7E-20 99.7 13.4 82 104-189 13-97 (100)
236 2dnp_A RNA-binding protein 14; 99.7 6.4E-16 2.2E-20 99.7 11.2 76 105-188 6-81 (90)
237 3nmr_A Cugbp ELAV-like family 99.7 1.6E-16 5.4E-21 115.1 9.2 76 5-80 94-174 (175)
238 1x5u_A Splicing factor 3B subu 99.7 9.9E-16 3.4E-20 101.7 12.3 81 104-188 11-95 (105)
239 2j8a_A Histone-lysine N-methyl 99.7 6.5E-17 2.2E-21 108.4 6.3 75 7-81 3-94 (136)
240 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 116.8 9.3 80 5-85 103-185 (196)
241 1x5t_A Splicing factor 3B subu 99.7 4.5E-16 1.5E-20 101.7 10.0 79 107-189 4-87 (96)
242 2do0_A HnRNP M, heterogeneous 99.7 3.5E-15 1.2E-19 100.5 14.6 80 104-187 11-93 (114)
243 2dnh_A Bruno-like 5, RNA bindi 99.7 1.4E-15 4.8E-20 101.0 12.4 79 106-188 13-97 (105)
244 2dhg_A TRNA selenocysteine ass 99.7 1.4E-15 4.7E-20 100.8 12.2 82 104-189 5-91 (104)
245 2hvz_A Splicing factor, argini 99.7 4.5E-16 1.5E-20 102.6 9.8 75 109-188 1-75 (101)
246 2voo_A Lupus LA protein; RNA-b 99.7 2.7E-16 9.1E-21 115.7 9.4 78 6-84 109-188 (193)
247 1u6f_A Tcubp1, RNA-binding pro 99.7 5.5E-15 1.9E-19 103.1 15.7 83 103-189 37-123 (139)
248 2cpi_A CCR4-NOT transcription 99.7 5.8E-16 2E-20 103.9 10.2 81 105-189 12-102 (111)
249 1wf1_A RNA-binding protein RAL 99.7 2.1E-15 7.3E-20 101.0 12.9 74 106-187 25-99 (110)
250 3v4m_A Splicing factor U2AF 65 99.7 3.2E-16 1.1E-20 103.8 8.7 79 3-81 2-95 (105)
251 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-15 4.5E-20 99.0 11.6 74 103-176 11-88 (94)
252 2jvo_A Nucleolar protein 3; nu 99.7 4.7E-16 1.6E-20 103.7 9.6 79 104-190 27-105 (108)
253 2cpd_A Apobec-1 stimulating pr 99.7 3.1E-15 1.1E-19 98.2 13.4 78 105-190 12-91 (99)
254 3bs9_A Nucleolysin TIA-1 isofo 99.7 1E-15 3.4E-20 98.1 10.6 77 106-186 4-84 (87)
255 2cpx_A Hypothetical protein FL 99.7 1.3E-15 4.4E-20 102.8 11.7 83 105-191 22-108 (115)
256 2x1f_A MRNA 3'-END-processing 99.7 7.7E-16 2.6E-20 100.6 10.2 77 107-187 1-81 (96)
257 3r27_A HnRNP L, heterogeneous 99.7 9.4E-16 3.2E-20 99.7 10.2 76 106-187 19-96 (100)
258 3md1_A Nuclear and cytoplasmic 99.7 1.4E-15 4.8E-20 96.5 10.8 75 109-187 2-80 (83)
259 1fxl_A Paraneoplastic encephal 99.7 4.3E-16 1.5E-20 111.8 9.4 77 4-80 86-167 (167)
260 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-15 3.6E-20 99.1 10.4 79 105-187 5-85 (92)
261 2kxn_B Transformer-2 protein h 99.7 9.6E-16 3.3E-20 105.5 10.7 81 103-187 41-125 (129)
262 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.7E-16 3.3E-20 97.7 10.1 71 106-176 5-79 (85)
263 2cpj_A Non-POU domain-containi 99.7 1.2E-15 4.2E-20 100.2 10.7 78 105-188 12-89 (99)
264 2ad9_A Polypyrimidine tract-bi 99.7 9.9E-16 3.4E-20 103.1 10.2 78 104-187 27-106 (119)
265 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-15 7.4E-20 107.3 12.5 78 106-187 37-118 (156)
266 1qm9_A Polypyrimidine tract-bi 99.7 4.8E-16 1.7E-20 114.9 9.4 77 4-82 118-196 (198)
267 3pgw_A U1-A; protein-RNA compl 99.7 6.6E-16 2.3E-20 120.4 10.7 76 4-81 205-281 (282)
268 2fc9_A NCL protein; structure 99.7 8.9E-16 3E-20 101.2 9.7 83 104-190 11-93 (101)
269 2cpe_A RNA-binding protein EWS 99.7 1.7E-15 5.7E-20 102.0 11.2 84 104-191 11-106 (113)
270 2lxi_A RNA-binding protein 10; 99.6 2.7E-16 9.2E-21 101.6 6.7 75 109-187 2-82 (91)
271 2dh8_A DAZ-associated protein 99.6 3.4E-15 1.2E-19 99.1 12.1 82 104-190 12-97 (105)
272 1wex_A Hypothetical protein (r 99.6 3.2E-15 1.1E-19 98.7 11.5 77 105-187 12-90 (104)
273 2cqh_A IGF-II mRNA-binding pro 99.6 9E-16 3.1E-20 99.6 8.8 79 106-191 6-86 (93)
274 2adc_A Polypyrimidine tract-bi 99.6 1.1E-15 3.8E-20 115.6 10.6 77 4-82 149-227 (229)
275 1p27_B RNA-binding protein 8A; 99.6 3.6E-15 1.2E-19 99.1 11.9 73 105-177 20-96 (106)
276 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5E-20 99.2 9.7 70 105-178 7-77 (96)
277 3ulh_A THO complex subunit 4; 99.6 2.6E-15 8.9E-20 100.0 11.1 77 102-178 23-102 (107)
278 2kt5_A RNA and export factor-b 99.6 8.9E-15 3E-19 100.0 14.0 81 103-187 30-113 (124)
279 2la6_A RNA-binding protein FUS 99.6 3.8E-15 1.3E-19 97.8 11.6 75 103-177 8-94 (99)
280 2e44_A Insulin-like growth fac 99.6 2.3E-15 7.8E-20 98.3 10.3 79 105-187 12-91 (96)
281 3tyt_A Heterogeneous nuclear r 99.6 5.1E-16 1.8E-20 115.3 7.9 77 4-80 121-204 (205)
282 2khc_A Testis-specific RNP-typ 99.6 3.1E-15 1.1E-19 101.4 11.1 75 103-177 35-113 (118)
283 1oo0_B CG8781-PA, drosophila Y 99.6 2.7E-15 9.2E-20 100.5 10.5 80 104-187 22-105 (110)
284 2ywk_A Putative RNA-binding pr 99.6 3.3E-15 1.1E-19 97.3 10.5 78 104-185 12-92 (95)
285 2cqd_A RNA-binding region cont 99.6 7.4E-15 2.5E-19 99.2 12.5 80 103-187 12-95 (116)
286 2xnq_A Nuclear polyadenylated 99.6 3.6E-15 1.2E-19 97.4 10.5 76 104-187 18-94 (97)
287 1sjr_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 105.4 11.2 80 107-188 45-124 (164)
288 2ytc_A PRE-mRNA-splicing facto 99.6 4.3E-15 1.5E-19 94.7 10.5 70 105-176 9-79 (85)
289 2jrs_A RNA-binding protein 39; 99.6 5.4E-15 1.8E-19 98.6 11.4 79 105-187 23-105 (108)
290 1x4e_A RNA binding motif, sing 99.6 4.5E-16 1.6E-20 99.3 5.8 71 106-176 3-77 (85)
291 1x5p_A Negative elongation fac 99.6 1.4E-14 4.9E-19 94.6 13.0 79 105-191 12-90 (97)
292 2dgw_A Probable RNA-binding pr 99.6 6.6E-15 2.3E-19 95.1 11.1 78 105-188 7-87 (91)
293 1s79_A Lupus LA protein; RRM, 99.6 4.2E-15 1.4E-19 98.1 10.3 73 106-179 9-84 (103)
294 2err_A Ataxin-2-binding protei 99.6 2.2E-15 7.7E-20 100.6 9.0 80 104-187 25-106 (109)
295 2la4_A Nuclear and cytoplasmic 99.6 2.8E-15 9.7E-20 98.8 9.3 75 106-186 25-99 (101)
296 2cqp_A RNA-binding protein 12; 99.6 2.7E-15 9.3E-20 98.3 9.2 78 105-186 12-93 (98)
297 3p5t_L Cleavage and polyadenyl 99.6 9.7E-16 3.3E-20 98.8 6.7 75 109-187 2-82 (90)
298 2cqg_A TDP-43, TAR DNA-binding 99.6 3.2E-14 1.1E-18 94.0 14.1 80 104-189 11-94 (103)
299 1x4b_A Heterogeneous nuclear r 99.6 8.5E-15 2.9E-19 99.0 11.4 81 106-191 25-109 (116)
300 1wg5_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 96.9 11.0 80 103-187 10-93 (104)
301 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.6E-14 5.4E-19 94.4 11.9 78 4-85 8-92 (100)
302 3ue2_A Poly(U)-binding-splicin 99.6 5.4E-16 1.8E-20 104.6 5.0 78 4-81 18-107 (118)
303 2m2b_A RNA-binding protein 10; 99.6 4.7E-15 1.6E-19 102.4 9.9 79 105-188 20-108 (131)
304 3ns6_A Eukaryotic translation 99.6 2.5E-15 8.7E-20 98.8 8.1 72 107-178 5-87 (100)
305 2krb_A Eukaryotic translation 99.6 1.9E-15 6.5E-20 95.5 7.3 68 109-176 2-78 (81)
306 1whx_A Hypothetical protein ri 99.6 3E-15 1E-19 100.3 8.5 69 106-176 8-76 (111)
307 3ucg_A Polyadenylate-binding p 99.6 8.3E-15 2.8E-19 94.2 10.2 75 108-187 6-84 (89)
308 2a3j_A U1 small nuclear ribonu 99.6 6.9E-15 2.4E-19 100.6 10.2 77 106-186 27-108 (127)
309 2jwn_A Embryonic polyadenylate 99.6 8.4E-15 2.9E-19 100.2 10.5 76 107-187 35-114 (124)
310 2lkz_A RNA-binding protein 5; 99.6 2.6E-15 8.7E-20 97.5 7.4 76 107-186 8-93 (95)
311 2e5g_A U6 snRNA-specific termi 99.6 1.7E-14 5.8E-19 93.7 11.3 73 107-186 7-80 (94)
312 1x4f_A Matrin 3; structural ge 99.6 8.7E-15 3E-19 97.4 9.7 71 104-176 21-94 (112)
313 3n9u_C Cleavage and polyadenyl 99.6 1E-14 3.4E-19 103.5 10.5 76 107-186 54-135 (156)
314 3lqv_A PRE-mRNA branch site pr 99.6 1.4E-14 4.9E-19 97.6 10.8 79 105-187 5-84 (115)
315 2ek1_A RNA-binding protein 12; 99.6 2.3E-15 7.9E-20 98.0 6.5 76 106-185 13-92 (95)
316 2fc8_A NCL protein; structure 99.6 2.8E-14 9.5E-19 94.1 11.6 81 104-191 11-95 (102)
317 2e5i_A Heterogeneous nuclear r 99.6 5E-14 1.7E-18 95.5 13.0 76 109-188 26-102 (124)
318 3s7r_A Heterogeneous nuclear r 99.6 2.3E-14 7.8E-19 91.7 10.8 71 105-176 8-82 (87)
319 1wez_A HnRNP H', FTP-3, hetero 99.6 1.5E-14 5E-19 95.4 10.1 73 104-178 11-86 (102)
320 2cq4_A RNA binding motif prote 99.6 2.6E-15 9E-20 101.2 6.6 77 106-187 23-103 (114)
321 1nu4_A U1A RNA binding domain; 99.6 4.9E-15 1.7E-19 96.9 7.7 79 105-187 5-88 (97)
322 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.7E-14 9.3E-19 99.7 12.0 75 102-176 57-135 (140)
323 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.6E-15 9E-20 98.7 6.3 71 104-176 15-90 (100)
324 2dnn_A RNA-binding protein 12; 99.6 1E-14 3.4E-19 97.1 9.1 75 106-186 14-91 (109)
325 3tht_A Alkylated DNA repair pr 99.6 4.9E-15 1.7E-19 117.2 8.9 77 2-81 14-97 (345)
326 1p1t_A Cleavage stimulation fa 99.6 1.1E-14 3.7E-19 96.5 9.2 77 107-187 7-87 (104)
327 2rs2_A Musashi-1, RNA-binding 99.6 1.8E-14 6E-19 96.2 10.2 80 106-190 23-106 (109)
328 1fjc_A Nucleolin RBD2, protein 99.6 5.2E-15 1.8E-19 96.5 7.5 78 105-187 13-90 (96)
329 2diu_A KIAA0430 protein; struc 99.6 1.5E-14 5E-19 91.8 9.1 71 107-187 7-83 (96)
330 1x5o_A RNA binding motif, sing 99.6 4.4E-14 1.5E-18 95.1 12.1 83 105-187 22-111 (114)
331 2cq2_A Hypothetical protein LO 99.6 8.8E-15 3E-19 97.5 8.4 64 106-171 23-88 (114)
332 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-14 7.7E-19 97.7 10.1 78 107-187 27-105 (130)
333 1jmt_A Splicing factor U2AF 35 99.6 1.3E-15 4.6E-20 100.6 3.5 68 13-80 22-103 (104)
334 2cpy_A RNA-binding protein 12; 99.6 1.3E-14 4.4E-19 97.7 8.2 78 105-187 12-93 (114)
335 2db1_A Heterogeneous nuclear r 99.6 1.9E-14 6.7E-19 97.4 9.1 78 104-186 13-96 (118)
336 2f3j_A RNA and export factor b 99.6 6.8E-14 2.3E-18 101.4 12.5 77 104-180 84-163 (177)
337 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.9E-15 2.7E-19 91.6 6.6 69 109-178 1-73 (77)
338 1wg1_A KIAA1579 protein, homol 99.6 2E-14 6.7E-19 92.2 8.6 74 107-187 4-77 (88)
339 2mss_A Protein (musashi1); RNA 99.6 1.1E-14 3.7E-19 90.5 7.2 67 110-177 1-71 (75)
340 2nlw_A Eukaryotic translation 99.6 1.4E-14 4.9E-19 96.0 8.2 68 107-174 14-89 (105)
341 2hzc_A Splicing factor U2AF 65 99.6 2.4E-14 8.4E-19 91.5 8.9 68 106-176 4-82 (87)
342 2hgl_A HNRPF protein, heteroge 99.5 1.2E-14 4.2E-19 100.5 7.5 78 103-185 39-122 (136)
343 2dis_A Unnamed protein product 99.5 7E-14 2.4E-18 93.3 10.7 78 106-187 6-91 (109)
344 1wel_A RNA-binding protein 12; 99.5 1.9E-14 6.4E-19 98.4 7.9 74 104-178 21-98 (124)
345 3s6e_A RNA-binding protein 39; 99.5 3.7E-14 1.3E-18 94.9 9.1 77 4-81 5-91 (114)
346 3sde_A Paraspeckle component 1 99.5 2.1E-14 7.3E-19 110.7 9.1 80 4-83 94-179 (261)
347 2lmi_A GRSF-1, G-rich sequence 99.5 1.6E-14 5.6E-19 96.1 6.9 72 105-177 8-85 (107)
348 2ki2_A SS-DNA binding protein 99.5 7.8E-15 2.7E-19 94.5 5.0 70 109-179 2-75 (90)
349 2bz2_A Negative elongation fac 99.5 5.1E-14 1.7E-18 95.7 8.9 76 105-188 36-111 (121)
350 3egn_A RNA-binding protein 40; 99.5 5.3E-14 1.8E-18 98.6 9.3 79 106-188 43-130 (143)
351 3d2w_A TAR DNA-binding protein 99.5 7.4E-14 2.5E-18 89.7 9.0 77 104-187 7-83 (89)
352 3q2s_C Cleavage and polyadenyl 99.5 5.2E-14 1.8E-18 106.1 9.2 72 107-178 67-144 (229)
353 1fj7_A Nucleolin RBD1, protein 99.5 6.9E-14 2.4E-18 92.0 8.6 76 106-187 15-94 (101)
354 2hgm_A HNRPF protein, heteroge 99.5 5.1E-14 1.7E-18 95.9 8.1 74 103-178 37-115 (126)
355 1iqt_A AUF1, heterogeneous nuc 99.5 2.5E-14 8.5E-19 88.9 6.1 68 110-178 1-72 (75)
356 2hgn_A Heterogeneous nuclear r 99.5 1.1E-14 3.8E-19 101.0 4.7 70 105-176 43-115 (139)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 3.6E-14 1.2E-18 91.0 6.5 76 107-191 4-81 (88)
358 2lcw_A RNA-binding protein FUS 99.2 2.2E-15 7.4E-20 101.9 0.0 81 106-190 5-97 (116)
359 2dha_A FLJ20171 protein; RRM d 99.5 7.4E-14 2.5E-18 94.8 7.3 75 106-185 21-102 (123)
360 2dit_A HIV TAT specific factor 99.5 7.1E-13 2.4E-17 88.8 12.0 80 104-187 11-101 (112)
361 2pe8_A Splicing factor 45; RRM 99.5 4.5E-13 1.5E-17 88.5 9.8 73 105-177 5-87 (105)
362 2dnl_A Cytoplasmic polyadenyla 99.4 1E-12 3.5E-17 88.4 10.4 64 106-170 6-79 (114)
363 2xs2_A Deleted in azoospermia- 99.4 2.7E-13 9.2E-18 89.3 7.2 70 106-177 7-79 (102)
364 2j8a_A Histone-lysine N-methyl 99.4 5.1E-13 1.8E-17 89.6 7.8 75 109-187 3-95 (136)
365 3v4m_A Splicing factor U2AF 65 99.4 1.9E-12 6.6E-17 85.5 8.0 72 107-178 4-91 (105)
366 2voo_A Lupus LA protein; RNA-b 99.4 1.1E-11 3.7E-16 91.0 12.4 113 54-177 63-180 (193)
367 3u1l_A PRE-mRNA-splicing facto 99.4 2E-12 6.9E-17 97.3 8.3 64 106-171 132-204 (240)
368 1owx_A Lupus LA protein, SS-B, 99.4 5.4E-12 1.8E-16 84.5 9.4 74 4-80 16-93 (121)
369 3s6e_A RNA-binding protein 39; 99.3 5.5E-12 1.9E-16 84.3 8.8 74 105-178 4-87 (114)
370 3ue2_A Poly(U)-binding-splicin 99.3 4.3E-12 1.5E-16 85.4 8.1 73 107-179 19-104 (118)
371 2dnr_A Synaptojanin-1; RRM dom 99.3 8.6E-12 2.9E-16 78.4 8.4 75 3-83 4-86 (91)
372 3tht_A Alkylated DNA repair pr 99.3 6.2E-12 2.1E-16 99.5 9.2 66 105-172 15-82 (345)
373 1owx_A Lupus LA protein, SS-B, 99.3 4.3E-11 1.5E-15 80.1 9.2 74 103-178 13-90 (121)
374 1jmt_A Splicing factor U2AF 35 99.2 4.4E-12 1.5E-16 83.6 3.6 65 113-177 20-99 (104)
375 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.1E-10 7.2E-15 74.7 9.7 63 118-187 27-89 (100)
376 1ufw_A Synaptojanin 2; RNP dom 99.1 1.2E-10 4.1E-15 73.5 6.3 72 3-80 12-92 (95)
377 3dxb_A Thioredoxin N-terminall 99.0 7.9E-10 2.7E-14 82.9 7.6 76 6-81 124-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 99.0 1.9E-09 6.6E-14 67.7 7.9 68 107-179 6-81 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.9 1.6E-08 5.5E-13 65.1 8.5 71 5-78 20-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 4E-09 1.4E-13 66.6 5.4 66 106-176 13-87 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 7.8E-07 2.7E-11 56.8 11.5 71 4-80 6-81 (104)
382 3dxb_A Thioredoxin N-terminall 98.6 8E-08 2.8E-12 71.9 7.9 59 121-179 142-208 (222)
383 2l9w_A U4/U6 snRNA-associated- 98.5 9.5E-07 3.2E-11 56.9 8.7 68 107-176 20-92 (117)
384 1wey_A Calcipressin 1; structu 98.5 1.6E-06 5.5E-11 55.6 8.8 76 5-83 4-84 (104)
385 1uw4_A UPF3X; nonsense mediate 98.1 1.2E-05 4.2E-10 50.7 6.8 66 7-72 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 98.0 2.3E-05 7.8E-10 49.5 6.7 55 6-66 16-70 (100)
387 1wey_A Calcipressin 1; structu 97.9 2.9E-05 9.9E-10 49.8 6.2 71 108-180 5-80 (104)
388 3ctr_A Poly(A)-specific ribonu 97.9 2.1E-05 7.2E-10 49.8 4.7 54 7-66 7-60 (101)
389 1wwh_A Nucleoporin 35, nucleop 97.8 0.00012 4.1E-09 48.3 8.0 70 6-80 24-94 (119)
390 1whv_A Poly(A)-specific ribonu 97.8 0.00018 6E-09 45.4 8.1 59 104-167 12-70 (100)
391 1uw4_A UPF3X; nonsense mediate 97.8 0.00028 9.4E-09 44.5 8.6 67 109-175 2-74 (91)
392 1wwh_A Nucleoporin 35, nucleop 97.7 0.00028 9.6E-09 46.5 8.0 68 105-176 21-88 (119)
393 2dhx_A Poly (ADP-ribose) polym 97.5 0.0007 2.4E-08 43.2 8.0 63 107-174 7-74 (104)
394 2l08_A Regulator of nonsense t 97.5 0.0001 3.4E-09 46.8 3.7 75 6-80 9-93 (97)
395 3ctr_A Poly(A)-specific ribonu 97.4 0.00025 8.4E-09 44.9 4.5 54 109-167 7-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 97.1 0.00027 9.2E-09 58.0 3.4 55 6-63 53-107 (464)
397 3p3d_A Nucleoporin 53; structu 97.0 0.0017 5.9E-08 43.4 5.9 74 5-80 6-96 (132)
398 2l08_A Regulator of nonsense t 97.0 0.0017 5.9E-08 41.1 5.4 69 108-176 9-83 (97)
399 3p3d_A Nucleoporin 53; structu 96.8 0.0013 4.3E-08 44.1 3.9 69 108-178 7-93 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.3 0.011 3.6E-07 48.7 3.3 56 107-164 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.5 0.096 3.3E-06 43.8 7.0 56 6-67 440-495 (507)
402 4eyt_A Telomerase associated p 93.3 0.84 2.9E-05 28.1 8.5 71 2-79 8-78 (129)
403 3d45_A Poly(A)-specific ribonu 92.0 0.73 2.5E-05 38.5 8.4 57 108-169 440-496 (507)
404 2g0c_A ATP-dependent RNA helic 89.6 2.1 7.1E-05 25.3 6.9 68 8-81 2-75 (76)
405 4eyt_A Telomerase associated p 81.6 7 0.00024 24.0 7.6 58 107-168 11-68 (129)
406 4e8u_A Putative uncharacterize 72.2 6.5 0.00022 27.5 4.7 56 8-63 14-81 (172)
407 3ts2_A Protein LIN-28 homolog 55.0 1.9 6.6E-05 29.5 -0.6 28 21-53 2-29 (148)
408 2e5p_A Protein PHF1, PHD finge 53.7 6.8 0.00023 22.5 1.6 21 31-56 28-48 (68)
409 3h7h_B Transcription elongatio 51.2 13 0.00043 23.8 2.8 36 32-69 40-75 (106)
410 3lpe_A Putative transcription 50.4 41 0.0014 20.6 6.4 33 33-67 40-72 (92)
411 3j21_T 50S ribosomal protein L 46.6 47 0.0016 20.2 5.7 54 10-63 26-81 (86)
412 2m0o_A PHD finger protein 1; t 44.7 11 0.00038 22.3 1.6 12 45-56 54-65 (79)
413 2eqj_A Metal-response element- 41.6 14 0.00047 21.3 1.7 12 44-55 40-51 (66)
414 1vq8_S 50S ribosomal protein L 40.5 60 0.0021 19.7 4.9 53 10-62 25-79 (85)
415 2e5q_A PHD finger protein 19; 40.0 5.7 0.0002 22.4 -0.1 14 43-56 33-46 (63)
416 2exu_A Transcription initiatio 36.1 17 0.00059 26.1 1.9 28 43-70 147-174 (200)
417 4hcz_A PHD finger protein 1; p 34.6 21 0.00072 19.9 1.6 12 45-56 31-42 (58)
418 2ns6_A Mobilization protein A; 32.8 84 0.0029 22.2 5.0 44 11-54 75-126 (185)
419 4a17_R RPL23A, 60S ribosomal p 32.1 1.1E+02 0.0038 20.8 5.2 54 10-63 90-145 (150)
420 2zkr_s 60S ribosomal protein L 32.0 1.2E+02 0.0041 20.7 5.4 54 10-63 96-151 (156)
421 3u5e_X 60S ribosomal protein L 31.4 1.2E+02 0.004 20.4 5.2 53 10-62 82-136 (142)
422 3iz5_X 60S ribosomal protein L 29.7 1E+02 0.0034 21.0 4.7 54 10-63 92-147 (152)
423 3u5e_X 60S ribosomal protein L 27.9 1.4E+02 0.0048 20.1 5.6 54 112-165 82-138 (142)
424 2v94_A RPS24, 30S ribosomal pr 27.8 85 0.0029 20.0 3.9 45 16-61 37-89 (107)
425 4bby_A Alkyldihydroxyacetoneph 27.6 52 0.0018 28.4 3.8 53 13-65 350-408 (658)
426 4a17_R RPL23A, 60S ribosomal p 26.9 1.5E+02 0.0052 20.1 5.6 53 113-165 91-146 (150)
427 3p8b_B Transcription antitermi 26.6 56 0.0019 22.0 3.1 34 33-68 33-66 (152)
428 1xn9_A 30S ribosomal protein S 26.5 60 0.0021 20.4 3.0 46 16-62 28-81 (101)
429 3fut_A Dimethyladenosine trans 25.8 66 0.0023 24.2 3.7 32 6-38 110-141 (271)
430 2lfv_A Protein DAMX; cell divi 30.6 16 0.00053 23.3 0.0 62 7-72 26-91 (106)
431 2lsl_A Telomerase associated p 30.5 16 0.00053 22.7 0.0 22 147-168 78-99 (137)
432 2xk0_A Polycomb protein PCL; t 24.3 45 0.0016 19.2 1.9 13 44-56 40-52 (69)
433 1ywx_A 30S ribosomal protein S 24.3 76 0.0026 20.0 3.1 44 16-60 28-79 (102)
434 2ns6_A Mobilization protein A; 24.3 1.8E+02 0.0061 20.4 5.5 47 110-156 72-127 (185)
435 2cfx_A HTH-type transcriptiona 24.3 1.5E+02 0.0053 19.3 7.1 47 122-168 78-124 (144)
436 2od0_A Hypothetical protein VP 23.8 73 0.0025 19.9 3.1 28 18-50 4-31 (105)
437 2k5n_A Putative cold-shock pro 23.7 32 0.0011 20.2 1.2 11 44-54 13-23 (74)
438 1cqm_A Ribosomal protein S6; a 23.5 1.2E+02 0.0043 18.7 4.1 50 14-63 10-76 (101)
439 3swz_A Steroid 17-alpha-hydrox 23.2 1.2E+02 0.0043 24.3 5.2 59 9-74 17-79 (494)
440 3fry_A Probable copper-exporti 23.1 1.1E+02 0.0036 17.0 5.9 55 6-64 6-60 (73)
441 3uzu_A Ribosomal RNA small sub 23.0 41 0.0014 25.4 2.1 32 7-38 115-146 (279)
442 1nz8_A Transcription antitermi 22.1 1.6E+02 0.0054 18.7 5.1 24 44-67 61-89 (119)
443 3lpe_A Putative transcription 22.1 1.4E+02 0.0048 18.1 6.6 33 135-168 40-72 (92)
444 3u5c_Y RP50, 40S ribosomal pro 22.1 77 0.0026 21.1 3.0 45 16-61 33-85 (135)
445 2kcm_A Cold shock domain famil 22.0 36 0.0012 20.0 1.2 12 43-54 10-21 (74)
446 1c9o_A CSPB, cold-shock protei 21.3 38 0.0013 19.2 1.2 11 44-54 12-22 (66)
447 3cam_A Cold-shock domain famil 21.0 39 0.0013 19.3 1.2 11 44-54 12-22 (67)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.6e-35 Score=217.84 Aligned_cols=179 Identities=15% Similarity=0.204 Sum_probs=143.5
Q ss_pred CCCCceEEEcCCC-CCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++++|||+||| +.+|+++|+++|+.||.|..|.+..+ .+|||||+|.+.++|++|++.|||..+.|++|.|.++.
T Consensus 1 g~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 1 GADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp -CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3578999999999 79999999999999999999999765 37999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCC--------CCCCC--CC--------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCe--eEEEEe
Q 027194 82 GGRGRSSSDRHS--------SHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVF 141 (226)
Q Consensus 82 ~~~~~~~~~~~~--------~~~~~--~~--------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~ 141 (226)
.....+...... .+... .. ......+..+|||+|||+.+++++|+++|+.||.| ..+.++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 654322110000 00000 00 00112456789999999999999999999999998 888888
Q ss_pred eCCC--CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 142 RDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 142 ~~~~--~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
.+.. .|+|||+|.+.++|.+|+..|||.++.|......+.++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 7642 36999999999999999999999999997655544443
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.5e-35 Score=220.86 Aligned_cols=163 Identities=23% Similarity=0.353 Sum_probs=141.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.|+++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..+++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCEEEEEeCCHHH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDD 158 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~ 158 (226)
...... ......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++
T Consensus 93 ~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSL-----------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHH-----------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cccccc-----------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 543211 112345799999999999999999999999999999987764 3599999999999
Q ss_pred HHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 159 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 159 A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
|.+|++.|||..+.|+ .|.+..+.+
T Consensus 156 a~~Ai~~lng~~~~g~----~i~V~~a~~ 180 (213)
T 4f02_A 156 AERAIEKMNGMLLNDR----KVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHTTCEETTE----ECEEEECCC
T ss_pred HHHHHHHhCCCEECCE----EEEEEEcCC
Confidence 9999999999999995 556665544
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.5e-34 Score=205.50 Aligned_cols=155 Identities=23% Similarity=0.398 Sum_probs=138.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999999999999999999999999999965 56778999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~ 157 (226)
+... .....+|+|.|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 23456799999999999999999999999999999988763 359999999999
Q ss_pred HHHHHHHHcCCcccccceeee
Q 027194 158 DMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 158 ~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+|.+|++.|||..+.|+.+..
T Consensus 142 ~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSSCC
T ss_pred HHHHHHHHhcCCccCCCccce
Confidence 999999999999999965433
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=205.83 Aligned_cols=158 Identities=25% Similarity=0.411 Sum_probs=139.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (226)
++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999965 35678999999999999999999999999999999999986433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHH
Q 027194 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMK 160 (226)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~ 160 (226)
. ....+..+|+|+|||..+++++|+++|+.||.|..+.+..+..+ |+|||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 12235678999999999999999999999999999999887543 48999999999999
Q ss_pred HHHHHcCCcccccceeeeEEEEeee
Q 027194 161 HAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
+|+..|||..+.|+ .+.+..+
T Consensus 144 ~A~~~l~g~~~~g~----~i~v~~a 164 (166)
T 3md3_A 144 NAMDSMQGQDLNGR----PLRINWA 164 (166)
T ss_dssp HHHHHHTTCEETTE----ECEEEES
T ss_pred HHHHHhCCCccCCc----EEEEEec
Confidence 99999999999995 5555544
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.2e-33 Score=204.78 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=136.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.++++|.+|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 789999999999999999999999999999999954 56788999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYD 157 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~ 157 (226)
+... ..+..+|+|.|||..+++++|+++|+.||.|..+.+..+... |+|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4331 234568999999999999999999999999999999887633 59999999999
Q ss_pred HHHHHHHHcCCccccc
Q 027194 158 DMKHAIKKLDDSEFRN 173 (226)
Q Consensus 158 ~A~~a~~~l~~~~~~g 173 (226)
+|.+|+..|||..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999987
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8.5e-34 Score=210.55 Aligned_cols=167 Identities=14% Similarity=0.292 Sum_probs=138.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5678999999999999999999999999999999965 46778999999999999999999 4999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~ 156 (226)
........ .....+..+|||.|||..+++++|+++|+.||.|..+.++.+..+ |+|||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 65432211 112235578999999999999999999999999999999987643 5999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeecCCC
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 189 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~~ 189 (226)
++|.+|+.. +|..+.|+ .+.+..+.+..
T Consensus 157 ~~A~~A~~~-~~~~~~G~----~i~v~~a~~k~ 184 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGH----NCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHHC-SCCEETTE----ECEEEECC---
T ss_pred HHHHHHHHh-CCcEECCE----EEEEEecCChh
Confidence 999999996 89999994 56666655533
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=6.4e-33 Score=217.08 Aligned_cols=179 Identities=18% Similarity=0.260 Sum_probs=145.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 2 SSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
...++++|||+|||+++|+++|+ ++|..||.|..|.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35889999999999999999966 89999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCC---------------------------------------C------------------------
Q 027194 78 ELAHGGRGRSSSDRHS---------------------------------------S------------------------ 94 (226)
Q Consensus 78 ~~~~~~~~~~~~~~~~---------------------------------------~------------------------ 94 (226)
.++............. .
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987544200000000 0
Q ss_pred -----CCCCC------------------------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 027194 95 -----HSSGR------------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 145 (226)
Q Consensus 95 -----~~~~~------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 145 (226)
....+ .......+..+|||+|||..+++++|+++|+.||.|..+.+..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 00000 000122356789999999999999999999999999999998665
Q ss_pred CCEEEEEeCCHHHHHHHHHHcCCcccc-cceeeeEEEEeee
Q 027194 146 GTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 185 (226)
Q Consensus 146 ~~~a~v~f~~~~~A~~a~~~l~~~~~~-g~~~~~~i~~~~~ 185 (226)
.|+|||+|.+.++|.+|+..|||..+. |+ .|++...
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~~a 280 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNN----AMKISFA 280 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC----EEEEEEe
Confidence 469999999999999999999999999 84 5555544
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=6.5e-33 Score=210.69 Aligned_cols=177 Identities=17% Similarity=0.235 Sum_probs=143.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++++|||+|||+ .+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 36789999999999 99999999999999999999998765 7999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCC------CCC--------CC--CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC
Q 027194 82 GGRGRSSSDRHSS------HSS--------GR--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (226)
Q Consensus 82 ~~~~~~~~~~~~~------~~~--------~~--~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 144 (226)
............. +.. .. .......+..+|||.|||..+++++|+++|..|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 6532221110000 000 00 0011124578999999999999999999999999 9999998653
Q ss_pred CCCEEEEEeCCHHHHHHHHHHcCCcccc-cceeeeEEEEeeec
Q 027194 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREYD 186 (226)
Q Consensus 145 ~~~~a~v~f~~~~~A~~a~~~l~~~~~~-g~~~~~~i~~~~~~ 186 (226)
..++|||+|.+.++|.+|+..|||..+. |+ .+++...+
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~----~l~v~~a~ 226 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENH----HLRVSFSK 226 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSC----BCEEEECS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCC----eEEEEEec
Confidence 3579999999999999999999999999 85 45555443
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.8e-32 Score=203.68 Aligned_cols=177 Identities=22% Similarity=0.384 Sum_probs=142.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
..+++|||+|||+++|+++|+++|..| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 56666554 56899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCC-CCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CC
Q 027194 73 HRLRVELAHGGRGRSSSDRHSSHS-SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 147 (226)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~ 147 (226)
+.|.|.++................ ..........+..+|||+|||..+++++|+++|..||.|..+.+..+.. .|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999987654332211111111 1111222345778999999999999999999999999999999998864 35
Q ss_pred EEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecCC
Q 027194 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (226)
Q Consensus 148 ~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 188 (226)
+|||+|.+.++|.+|+..|||..+.| ..+.+..+.++
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999 56666666553
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.1e-32 Score=204.96 Aligned_cols=170 Identities=17% Similarity=0.255 Sum_probs=139.5
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 5 ASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 5 ~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.+++|||+|||+ .+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999998765 799999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCC------CC----------CCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCC
Q 027194 84 RGRSSSDRHSS------HS----------SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG 146 (226)
Q Consensus 84 ~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~ 146 (226)
........... +. ..........+..+|+|.|||..+++++|+++|..|| .|..+.++.+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32221110000 00 0000111224578999999999999999999999999 99999986643 5
Q ss_pred CEEEEEeCCHHHHHHHHHHcCCcccc-cceee
Q 027194 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (226)
Q Consensus 147 ~~a~v~f~~~~~A~~a~~~l~~~~~~-g~~~~ 177 (226)
|+|||+|.+.++|.+|+..|||..+. |+.+.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 79999999999999999999999999 85443
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-32 Score=206.56 Aligned_cols=171 Identities=20% Similarity=0.326 Sum_probs=140.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999965 46789999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHH
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~ 157 (226)
......... ...........+|||.|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.+
T Consensus 107 ~~~~~~~~~--------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPII--------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHH--------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhh--------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 332100000 00000123457899999999999999999999999999999998854 359999999999
Q ss_pred HHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 158 DMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 158 ~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
+|.+|+..|||..++|+ .|.+....+
T Consensus 179 ~A~~A~~~l~g~~~~g~----~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQ----YLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSSS----BCEEEECSS
T ss_pred HHHHHHHHccCCEeCCc----EEEEEEecC
Confidence 99999999999999995 555555544
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.7e-32 Score=198.35 Aligned_cols=150 Identities=23% Similarity=0.439 Sum_probs=132.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
+++++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.++++|.+|+ .+||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 468999999999999999999999999 6 67777665 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CE
Q 027194 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TT 148 (226)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~ 148 (226)
+.|.|.++..... .....+|+|+|||..+++++|+++|+.||.|..+.+..++.. |+
T Consensus 78 ~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998654321 123567999999999999999999999999999999888643 59
Q ss_pred EEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 149 a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
|||+|.+.++|.+|+..|||..++|+.+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 9999999999999999999999999544
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.3e-32 Score=199.16 Aligned_cols=151 Identities=17% Similarity=0.340 Sum_probs=132.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---C--CCCceEEEEEcCHHHHHHHHHhcCCCCCC---CceEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---P--RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 76 (226)
++++|||+|||+++|+++|+++|+.||.|..|.+..+ + .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6789999999999999999999999999999999653 2 67899999999999999999999998776 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEe
Q 027194 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (226)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f 153 (226)
+.++..... ......+|||+|||..+++++|+++|+.||.|..+.+..+..+ |+|||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 887654322 1235668999999999999999999999999999999888653 5899999
Q ss_pred CCHHHHHHHHHHcCCccccc
Q 027194 154 TNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 154 ~~~~~A~~a~~~l~~~~~~g 173 (226)
.+.++|.+|+..|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999987764
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.8e-33 Score=203.53 Aligned_cols=162 Identities=17% Similarity=0.244 Sum_probs=137.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
..++++|||+|||+++|+++|+++|..||.+..+.+ ..++.++|||||+|.++++|.+|++ |||..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997765323 3457889999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~ 160 (226)
..... ....+..+|||+|||..+++++|+++|+.||.|..+ .......|+|||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 65322 122466789999999999999999999999988877 333445679999999999999
Q ss_pred HHHHHcCCcccccceeeeEEEEeeecC
Q 027194 161 HAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
+|+..|||..+.| ..+.+..+.+
T Consensus 151 ~A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 151 KNLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHHhCCCEECC----eEEEEEecCC
Confidence 9999999999999 4666666544
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=8.4e-33 Score=200.14 Aligned_cols=158 Identities=17% Similarity=0.371 Sum_probs=137.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999965 478899999999999999999994 67889999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~ 156 (226)
.... ...+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 4321 112456899999999999999999999999999999987753 36999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
++|.+|++ ++|..+.|+ .+.+..+.+
T Consensus 140 ~~a~~A~~-~~~~~~~g~----~i~V~~a~p 165 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDR----KIEIKRAEP 165 (167)
T ss_dssp HHHHHHHH-CSEECSSSS----CEEEEECCC
T ss_pred HHHHHHHh-CCCEEeCCe----EEEEeecCC
Confidence 99999998 899999995 555555543
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.5e-31 Score=207.57 Aligned_cols=166 Identities=15% Similarity=0.249 Sum_probs=139.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++++|||+|||+.+|+++|+++|..|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 5779999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCC-----CCEEEEEeCC
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~a~v~f~~ 155 (226)
+....... .....+..+|||.|||.. +++++|+++|+.||.|..+.++.+.. .|+|||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432211 122346678999999999 99999999999999999999987654 4699999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 156 ~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
.++|.+|+ .|||..+.| ..+.+..+.+
T Consensus 264 ~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 99999999 999999999 5666666544
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.3e-30 Score=201.85 Aligned_cols=151 Identities=24% Similarity=0.320 Sum_probs=136.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|||+++|+++|+++|..|| |..+.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 4689999999999999999999999999 998888 4678999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A 159 (226)
...+|||+|||..+++++|+++|..||.|..+.++.+..+ |+|||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 3357999999999999999999999999999999887643 5999999999999
Q ss_pred HHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 160 KHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
..|+..|+|..+.|+ .+.+....+
T Consensus 151 ~~A~~~l~~~~~~g~----~i~v~~a~~ 174 (284)
T 3smz_A 151 ARAKSDLLGKPLGPR----TLYVHWTDA 174 (284)
T ss_dssp HHHHHHHTTCEETTE----ECEEEECCG
T ss_pred HHHHHHhCCCEeCCc----EEEEEECCC
Confidence 999999999999994 555555544
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.1e-30 Score=202.15 Aligned_cols=141 Identities=26% Similarity=0.388 Sum_probs=127.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 4567999999999999999999999999999999974 489999999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMK 160 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~ 160 (226)
..+|||+|||..+++++|+++|..||.|..+.++.+.. .|+|||+|.+.++|.
T Consensus 96 ------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 96 ------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp ------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred ------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 45799999999999999999999999999999988754 359999999999999
Q ss_pred HHHHHcCCcccc
Q 027194 161 HAIKKLDDSEFR 172 (226)
Q Consensus 161 ~a~~~l~~~~~~ 172 (226)
+|+..||+..+.
T Consensus 152 ~A~~~l~~~~~~ 163 (261)
T 3sde_A 152 KALERCGDGAFL 163 (261)
T ss_dssp HHHHHHHHSCEE
T ss_pred HHHHHhcCCeEE
Confidence 999999554443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-30 Score=202.98 Aligned_cols=164 Identities=19% Similarity=0.252 Sum_probs=143.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+.+|+++|+++|..||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999864 5678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCH
Q 027194 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNY 156 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~ 156 (226)
...... .......+|||+|||..+ ++++|+++|+.||.|..+.+..+..+ |+|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 653321 122456789999999996 99999999999999999999887543 5999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 157 ~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
++|.+|+..|||..+.|+ .+.+....+
T Consensus 237 ~~A~~A~~~l~g~~~~g~----~l~v~~a~~ 263 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGS----HLRVSFCAP 263 (284)
T ss_dssp HHHHHHHHHHTTCEETTE----ECEEEECCS
T ss_pred HHHHHHHHHhCCCccCCe----EEEEEEecC
Confidence 999999999999999994 666666655
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.2e-30 Score=203.67 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=133.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+..+ ..++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 57899999999999999999999999999999999764 3358999999999999999996 9999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC---CCCEEEEEeCCHHH
Q 027194 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~---~~~~a~v~f~~~~~ 158 (226)
...+|||+|||..+++++|+++|..|| .|..+.++.+. ..|+|||+|.+.++
T Consensus 116 ------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 ------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp ------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred ------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 245799999999999999999999999 99999998765 45799999999999
Q ss_pred HHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 159 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 159 A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
|..|+..|||..+.| ..+.+....+
T Consensus 172 a~~A~~~l~g~~~~g----~~l~v~~a~~ 196 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEG----YTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 999999999999999 4555555544
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=1.3e-24 Score=147.32 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.+.+|||+|||+++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..+.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3578999999999999999999999999999999654 456899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHH
Q 027194 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 124 (226)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~-----------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE-----------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc-----------cccccCCCCceEeCCCCCCccccc
Confidence 321111 011122345799999999998763
No 22
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.89 E-value=4.4e-23 Score=139.90 Aligned_cols=106 Identities=29% Similarity=0.464 Sum_probs=95.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
...++++|||+|||+.+|+++|+++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999999888889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC
Q 027194 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 134 (226)
+... ..+++...++++|.++|+.||.
T Consensus 84 ~~~~---------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA---------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH---------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh---------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 4322 1466777889999999999984
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=132.57 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..+.|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999965 47789999999999999999999999999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.6e-21 Score=139.55 Aligned_cols=139 Identities=16% Similarity=0.082 Sum_probs=101.5
Q ss_pred CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCC
Q 027194 42 PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (226)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 121 (226)
..++|||||+|.+.++|++|+..+++....+..+.+........... ............+..+|||+|||..++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~nl~~~~~ 83 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVDNLTYRTS 83 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEESCCTTCC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEeCCCCCCC
Confidence 36789999999999999999988876444333333322111000000 000011112234677999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecCCCC
Q 027194 122 WQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRD 190 (226)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~~~ 190 (226)
+++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.|+ .|.+..+.+.+.
T Consensus 84 ~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~~~~ 152 (158)
T 2kn4_A 84 PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS----EEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEECCCCCC
Confidence 999999999999999999987753 46999999999999999999999999994 667777665433
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=4.3e-22 Score=141.28 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=108.5
Q ss_pred CCCCceEEEEEcCHHHHHHHHHhc-CCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC
Q 027194 42 PRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120 (226)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 120 (226)
...+|+++|+|.+.++|++|++.+ ||..+.| .|.+.++........... ............+.++|||+|||+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 356899999999999999999999 9999999 999998754221111000 00111122334567899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
++++|+++|..||.|..+.++.+ ..|||||+|.+.++|..|+..|||..+.|+ .+.+....+
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~ 147 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGC----RVRVELSNG 147 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSS----CCEEEECCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEcCC
Confidence 99999999999999999999887 467999999999999999999999999995 455555544
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=130.25 Aligned_cols=100 Identities=43% Similarity=0.640 Sum_probs=83.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (226)
++|||+|||+++|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|++|+..|||..+.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999876 7999999999999999999999999999999999999865533
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEecCCC
Q 027194 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 117 (226)
....... .......++||+||+
T Consensus 79 ~~~~~~~---------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPP---------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCC---------CSCCCCSCCCSCCCC
T ss_pred ccCCCCC---------ccccCCCceecCCCC
Confidence 2211111 112345679999986
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=129.77 Aligned_cols=83 Identities=60% Similarity=1.066 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++++|||+|||+++|+++|+++|..||.|..|.+..++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=129.66 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=78.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
|...++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999966 57888999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 027194 79 LAHGGRGR 86 (226)
Q Consensus 79 ~~~~~~~~ 86 (226)
++......
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99865543
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=5.4e-22 Score=128.60 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=71.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcC-CCCCCCceEEEEEc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELA 80 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 80 (226)
+++|||+|||+++|+++|+++|+.|| .|.+|.+.. ++.++|||||+|.+.++|++|++.++ +..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999865 47889999999999999999999774 56799999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75443
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=128.47 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC--CCCCCceEEEEE
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 79 (226)
+..++++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.|++ ..+.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999999864 89999999999999999998864 789999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976544
No 31
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.86 E-value=1.1e-21 Score=132.75 Aligned_cols=79 Identities=54% Similarity=0.976 Sum_probs=68.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee-eeEEEEee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVRVRE 184 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~-~~~i~~~~ 184 (226)
...++|||.|||+.+++++|+++|..||.|..+.++.+ +||||+|.+.++|.+|++.|||..+.|+.+ ..++++..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45689999999999999999999999999999999876 799999999999999999999999999765 35677777
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
+.+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 655
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=125.67 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCC--CCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~ 80 (226)
..|+++|||+|||+.+|+++|+++|++||.|..+.+.+ .+|+|||+|.+.++|.+|+..|++.. +.|++|.|.++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 36899999999999999999999999999999999974 48999999999999999999999876 78999999999
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
+..
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 753
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=123.42 Aligned_cols=82 Identities=29% Similarity=0.506 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 57899999999999999999999999999999999664 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=124.33 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999965 567899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976554
No 35
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=130.24 Aligned_cols=82 Identities=18% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
..++++|||+|||+.+++++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..+.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4678999999999999999876 799999999999998888999999999999999999999999999999999999
Q ss_pred EccCCC
Q 027194 79 LAHGGR 84 (226)
Q Consensus 79 ~~~~~~ 84 (226)
++....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997543
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=128.86 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.|.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred cC
Q 027194 81 HG 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=125.84 Aligned_cols=84 Identities=26% Similarity=0.456 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC------CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
+.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 468899999999999999999999999999999999652 26789999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 027194 77 VELAHGGRGR 86 (226)
Q Consensus 77 v~~~~~~~~~ 86 (226)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999765543
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=123.48 Aligned_cols=82 Identities=24% Similarity=0.530 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 467899999999999999999999999999999999653 6789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976544
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=5.5e-21 Score=120.17 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
-.+..|||+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.++++|.+|++.||+..+.|++|.|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578899999999999999999999999999999974 6999999999999999999999999999999999876
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=123.99 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.++|||+|||+.+|+++|+++|+.||.|..|.+..+ ..++|||||+|.+.++|++|+..||+..+.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999764 3468999999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 6543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=7.7e-21 Score=124.57 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
|+++|||+|||+.+++++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999654 6779999999999999999999999999999999999997
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=125.58 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCC--eeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCC----CCCCce
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGHR 74 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 74 (226)
...++|||+|||+++|+++|+++|++||. |..|++.+ ++.++|||||+|.+.++|++|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 56789999999999999999999999995 67888855 4788999999999999999999999997 488999
Q ss_pred EEEEEccC
Q 027194 75 LRVELAHG 82 (226)
Q Consensus 75 i~v~~~~~ 82 (226)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=126.04 Aligned_cols=83 Identities=34% Similarity=0.584 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 57899999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
......
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=125.46 Aligned_cols=82 Identities=37% Similarity=0.577 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76544
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.9e-21 Score=127.57 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC--CCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~ 80 (226)
..++++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.|+ +..+.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999864 8999999999999999999887 46899999999999
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 765543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=124.27 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86554
No 47
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=2.9e-21 Score=126.87 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=76.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 1 ~~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
|+..++++|||+|||+++++++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999999 9999999999999987777899999999999999999999999999999999
Q ss_pred EEEccCCC
Q 027194 77 VELAHGGR 84 (226)
Q Consensus 77 v~~~~~~~ 84 (226)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987543
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=124.21 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 76544
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=124.43 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec-CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999999999999999999999999999965 46778999999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6554
No 50
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=122.67 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhc--CCCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~ 80 (226)
..|+++|||+|||+.+|+++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|++.| ++..+.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998754 899999999999999999976 467799999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 76544
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=123.07 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEE-EEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.++++|||+|||+++|+++|+++|+.||.|..+ .+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 8854 467899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976543
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-21 Score=125.33 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCC--CCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~ 79 (226)
..|+++|||+|||+ ++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|..|++.||+. .+.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 36899999999999 9999999999999999999999753 699999999999999999998865 48999999999
Q ss_pred ccCCC
Q 027194 80 AHGGR 84 (226)
Q Consensus 80 ~~~~~ 84 (226)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97543
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=122.67 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.+.++|||+|||+++++++|+ ++|+.||.|..|.+..+...+|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999987654489999999999999999999999999999999999
Q ss_pred ccCCC
Q 027194 80 AHGGR 84 (226)
Q Consensus 80 ~~~~~ 84 (226)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97544
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=9.4e-21 Score=121.32 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46889999999999999999999999999999999854 467799999999999999999999999999999999998
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.2e-20 Score=120.22 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
+++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467799999999999999999999999999999999999875
Q ss_pred C
Q 027194 83 G 83 (226)
Q Consensus 83 ~ 83 (226)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=122.51 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+..+ ..++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 367899999999999999999999999999999999764 3478999999999999999999999999999999999997
Q ss_pred CCCCC
Q 027194 82 GGRGR 86 (226)
Q Consensus 82 ~~~~~ 86 (226)
.....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 65543
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=121.67 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4788999999999999999999999999999999965 4677899999999999999999999999999999999998
Q ss_pred cC
Q 027194 81 HG 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 58
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=122.96 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCC--CCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~ 81 (226)
.|+++|||+|||+.+|+++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|++.|++. .+.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 6789999999999999999999999999999999875 3899999999999999999988654 5899999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6543
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.1e-20 Score=121.52 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec-CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..||+..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999965 56778999999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=122.26 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++++++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57899999999999999999999999999999999664 678999999999999999999999999999999999987
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=119.43 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..+.++|||+|||+++|+++|+++|+.||.|..|.+. +|||||+|.+.++|++|+..||+..+.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4688999999999999999999999999999999998 79999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=5.7e-20 Score=124.43 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 027194 81 HGGRGRS 87 (226)
Q Consensus 81 ~~~~~~~ 87 (226)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765543
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.4e-20 Score=122.93 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec----CCCCCceEEEEEcCHHHHHHHHHhc-CCCCCCCceEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v 77 (226)
..++++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999954 4677999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 027194 78 ELAHGGRG 85 (226)
Q Consensus 78 ~~~~~~~~ 85 (226)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99976543
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=123.18 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC----CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
..+.++|||+|||+++|+++|+++|..|| |..|.+..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999664 677999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 027194 79 LAHGGRG 85 (226)
Q Consensus 79 ~~~~~~~ 85 (226)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976544
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=122.61 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 46778999999999999999999999999999999999987
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 66
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=7.4e-20 Score=121.42 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 477999999999999999999999999999999997 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 027194 84 RGRS 87 (226)
Q Consensus 84 ~~~~ 87 (226)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5543
No 67
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=125.64 Aligned_cols=81 Identities=26% Similarity=0.336 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC--CCCCCCceEEEE
Q 027194 2 SSRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVE 78 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 78 (226)
+..++++|||+|||++ +|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+|++.|+ +..+.|++|.|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3578999999999998 9999999999999999999997 358999999999999999999886 456999999999
Q ss_pred EccCCCC
Q 027194 79 LAHGGRG 85 (226)
Q Consensus 79 ~~~~~~~ 85 (226)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9975443
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=2.7e-20 Score=126.08 Aligned_cols=83 Identities=19% Similarity=0.469 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999965 467789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 976544
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=124.42 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 70
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=6.3e-20 Score=122.42 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCC---CCceEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~ 76 (226)
..+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999966 367899999999999999999999999887 899999
Q ss_pred EEEccCCCC
Q 027194 77 VELAHGGRG 85 (226)
Q Consensus 77 v~~~~~~~~ 85 (226)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=119.88 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCC---C-CCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~---~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+++|||+|||+++|+++|+++|+.||.|..+.+..+. . ++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999996542 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=123.20 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCee-EEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce---
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--- 74 (226)
+..++++|||+|||+++|+++|+++|..||.|. .|.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 999965 4677899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 027194 75 -LRVELAHGGR 84 (226)
Q Consensus 75 -i~v~~~~~~~ 84 (226)
|.|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987543
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=124.62 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46788999999999999999999999999999999654 677899999999999999999999999999999999998
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 653
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=123.33 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcC------CCCCCCce
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g~~ 74 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|.+|+..|| +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 57899999999999999999999999999999999654 6789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 027194 75 LRVELAHGGRG 85 (226)
Q Consensus 75 i~v~~~~~~~~ 85 (226)
|.|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999876543
No 75
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-20 Score=118.75 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|.+|+..||+..+.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999998 66999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=5.5e-20 Score=122.47 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC---ceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 78 (226)
.++++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5689999999999999999999999999999999965 46678999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 027194 79 LAHGGRG 85 (226)
Q Consensus 79 ~~~~~~~ 85 (226)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9976543
No 77
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=122.53 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999965 367899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 975543
No 78
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=121.59 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC-----ceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~ 78 (226)
++.++|||+|||+++|+++|+++|..||.|..|.+..+ |||||+|.+.++|++|++.||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56899999999999999999999999999999999865 999999999999999999999999999 999999
Q ss_pred EccCCCC
Q 027194 79 LAHGGRG 85 (226)
Q Consensus 79 ~~~~~~~ 85 (226)
++.+...
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9986443
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=122.78 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
..++++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 4667899999999999999999999999999999999998
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=122.21 Aligned_cols=78 Identities=36% Similarity=0.575 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 57899999999999999999999999999999999654 577899999999999999999999999999999999998
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 81
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=118.29 Aligned_cols=78 Identities=32% Similarity=0.567 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999998 66999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=119.78 Aligned_cols=78 Identities=26% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC--CceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~ 81 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +|||||+|.+.++|++|++.||+..+. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999999743 789999999999999999999999999 9999999997
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
+..
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=122.59 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999654 6789999999999999999999 99999999999999876
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=5.6e-21 Score=123.70 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+|||+|||+++|+++|+++|+.|| .|..+.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999855 57889999999999999999999999999999999999987
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5443
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=121.16 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
..++++|||+|||+.+++++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..||+..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357899999999999999999999999999999999654 667899999999999999999999999999999999987
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3.7e-20 Score=127.62 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred ccCCC
Q 027194 80 AHGGR 84 (226)
Q Consensus 80 ~~~~~ 84 (226)
+....
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 86543
No 87
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=4.2e-19 Score=145.88 Aligned_cols=82 Identities=35% Similarity=0.623 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+.+|+++|.++|..||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86544
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=4.6e-20 Score=123.31 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
...++|||+|||+++|+++|+++|..|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..+.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899998853 35799999999999999999999999999999999999864
Q ss_pred C
Q 027194 83 G 83 (226)
Q Consensus 83 ~ 83 (226)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=121.47 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..+.++|||+|||+.+|+++|+++|..||.|..|.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 356889999999999999999999999999999999865 89999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 90
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-19 Score=118.74 Aligned_cols=82 Identities=55% Similarity=0.961 Sum_probs=71.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee-eeEEE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVR 181 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~-~~~i~ 181 (226)
++....++|||.|||+.+++++|+++|..||.|..+.++.+ +||||+|.+.++|.+|++.|||..+.|... ...|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 33456789999999999999999999999999999999887 799999999999999999999999998332 35677
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+..+.+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 777765
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=121.44 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhh-cCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCC-CCCceEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 78 (226)
..++++|||+|||+++|+++|+++|.. ||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+.. +.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999965 56778999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 027194 79 LAHGGRG 85 (226)
Q Consensus 79 ~~~~~~~ 85 (226)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9865443
No 92
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=123.48 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCe----eEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.++++|||+|||+.+|+++|+++|..||.| ..+.+. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 577999999999999999999999999998 455554 788899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 027194 80 AHGGRGR 86 (226)
Q Consensus 80 ~~~~~~~ 86 (226)
+......
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9865543
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=121.09 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
..+.++|||+|||+++|+++|+++|+.||.|.. +.+.. ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 367899999999999999999999999999999 88864 4678999999999999999999999999999
Q ss_pred CceEEEEEcc
Q 027194 72 GHRLRVELAH 81 (226)
Q Consensus 72 g~~i~v~~~~ 81 (226)
|+.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-19 Score=120.63 Aligned_cols=81 Identities=28% Similarity=0.529 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..|| |..|.+..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 999999654 677899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=122.92 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8643
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.6e-20 Score=123.16 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
..++++|||+|||+++|+++|+++|..||.|. .|.+.. ++.++|||||+|.+.++|++|+..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999998 588854 4678999999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 027194 72 GHRLRVELAHGGRG 85 (226)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (226)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999976544
No 97
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=119.28 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|||+.+|+++|+++|..||.|..|.+.. .+|||||+|.+.++|.+|++.|||..+.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5778999999999999999999999999999999984 3899999999999999999999999999999999999764
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 98
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.3e-20 Score=125.19 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999965 467899999999999999999999999999999999998
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 99
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=2.6e-20 Score=122.90 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC-c
Q 027194 4 RASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-H 73 (226)
Q Consensus 4 ~~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~ 73 (226)
..+++|||+|||+ ++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999954 47789999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q 027194 74 RLRVELAHG 82 (226)
Q Consensus 74 ~i~v~~~~~ 82 (226)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999853
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=7.2e-20 Score=122.34 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999999999999999999999999999999864 56778999999999999999999999999999999999974
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=7.3e-20 Score=122.92 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999964 4677999999999999999999999999999999999998
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 654
No 102
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=126.29 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999965 3567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 866544
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=122.17 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999654 45789999999999999999999999999999999999865
Q ss_pred C
Q 027194 83 G 83 (226)
Q Consensus 83 ~ 83 (226)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 104
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=1.7e-19 Score=118.25 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 36889999999998 99999999999999999999995 8999999999999999999999999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=121.31 Aligned_cols=81 Identities=26% Similarity=0.432 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEEe-cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc-e
Q 027194 3 SRASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-R 74 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~ 74 (226)
...+++|||+|||+.+ |+++|+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3567899999999999 789999999999999999985 3678899999999999999999999999999999 9
Q ss_pred EEEEEccCC
Q 027194 75 LRVELAHGG 83 (226)
Q Consensus 75 i~v~~~~~~ 83 (226)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998643
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.3e-19 Score=116.56 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46789999999999999999999999999999999964 47789999999999999999997 688889999999987
Q ss_pred c
Q 027194 80 A 80 (226)
Q Consensus 80 ~ 80 (226)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=3e-19 Score=122.50 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46789999999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6544
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.1e-19 Score=124.98 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 027194 81 HGGRGR 86 (226)
Q Consensus 81 ~~~~~~ 86 (226)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 765543
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.8e-20 Score=123.22 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEEecCC------CCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
.+.++|||+|||+++++++|+ ++|..||.|..|.+..+. .++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996642 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 027194 75 LRVELAHGGR 84 (226)
Q Consensus 75 i~v~~~~~~~ 84 (226)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987554
No 110
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1e-19 Score=119.19 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++++|||+|||+ .+|+++|+++|..||.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36899999999998 99999999999999999999996 8999999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=119.11 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEEe-c---CCCCCceEEEEEcCHHHHHHHHHhcC--CCCCCCceE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i 75 (226)
+.++++|||+|||+++|+++|+++|..||. |..|.+. . ++.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999986 3 35789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 027194 76 RVELAHGGRG 85 (226)
Q Consensus 76 ~v~~~~~~~~ 85 (226)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 112
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=116.16 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhc-CCCCCCCceEEEEEcc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~ 81 (226)
..++++|||+|||+.+|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..| ++..+.|++|.|.+++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 36789999999999999999999999999999999985 4799999999999999999988 9999999999999874
No 113
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=121.89 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
+++++|||+|||+.+|+++|+++|..||.|..|.+.. ++|||||+|.+.++|++|+..|||..+.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999999999873 5899999999999999999999999999999999999754
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=120.39 Aligned_cols=80 Identities=15% Similarity=0.366 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 57899999999999999999999999999999999653 788999999999999999999965 59999999999998
Q ss_pred cCCC
Q 027194 81 HGGR 84 (226)
Q Consensus 81 ~~~~ 84 (226)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 115
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.7e-19 Score=116.44 Aligned_cols=77 Identities=23% Similarity=0.490 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|++|+ .|||..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5688999999999999999999 899999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=117.42 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+.+|+++|+++|..| |.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999876 7899999999999999999999999999999999997
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=120.28 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|||+++|+++|+++|..||.|.-+ ...++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988322 1246788999999999999999999999999999999999999765
Q ss_pred CC
Q 027194 84 RG 85 (226)
Q Consensus 84 ~~ 85 (226)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=5.1e-20 Score=116.74 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEEe-cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc-eEEE
Q 027194 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (226)
Q Consensus 6 ~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 77 (226)
+++|||+|||+.+ |+++|+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 779999999999999999985 3678899999999999999999999999999999 8876
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=121.48 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|+.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 467899999999999999999999999999999999653 67789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876544
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.7e-19 Score=120.51 Aligned_cols=77 Identities=32% Similarity=0.580 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++++|||+|||+++|+++|+++|+.||.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 89999999999999999999999999999999999876
Q ss_pred CC
Q 027194 83 GR 84 (226)
Q Consensus 83 ~~ 84 (226)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 121
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=118.03 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC-CCCCCceEEEEEc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~ 80 (226)
+.+.++|||+|||+++|+++|+++|..||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 489999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 76543
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=118.08 Aligned_cols=79 Identities=28% Similarity=0.498 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
..+++|||+|||+++|+++|+++|..||.|. +.+.. +.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999997 55543 467999999999999999999999999999999999998754
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 123
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=119.19 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=71.5
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC-----CCce
Q 027194 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (226)
Q Consensus 2 ~~~~~~~l~v--~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-----~g~~ 74 (226)
+..|+++||| +||++.+|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4678999999 77999999999999999999999998863 389999999999999999999999987 6899
Q ss_pred EEEEEccCC
Q 027194 75 LRVELAHGG 83 (226)
Q Consensus 75 i~v~~~~~~ 83 (226)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998643
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-20 Score=121.21 Aligned_cols=81 Identities=33% Similarity=0.701 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred cCCC
Q 027194 81 HGGR 84 (226)
Q Consensus 81 ~~~~ 84 (226)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 125
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=1.3e-19 Score=148.88 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
.+.++|||+|||+.+++++|.++|..||.|..|.|+.+.. .|||||+|.+.++|..||..|||..|.|+.+.+.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999987653 46999999999999999999999999996555444
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=128.18 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++|||+|||+++|+++|+++|..|| .|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999964 478899999999999999999999999999999999999
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-20 Score=118.85 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999965 467899999999999999999999999999999998865
Q ss_pred c
Q 027194 80 A 80 (226)
Q Consensus 80 ~ 80 (226)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=3.8e-19 Score=126.83 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999654 667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86544
No 129
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=5e-19 Score=126.52 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 130
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=117.06 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 367899999999999999999999999999999999653 7788999999999999999999 47789999999999
Q ss_pred ccCCCC
Q 027194 80 AHGGRG 85 (226)
Q Consensus 80 ~~~~~~ 85 (226)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976544
No 131
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=124.25 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeE--EEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCC----CCCCc
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~ 73 (226)
+.++++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred eEEEEEccCCCC
Q 027194 74 RLRVELAHGGRG 85 (226)
Q Consensus 74 ~i~v~~~~~~~~ 85 (226)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 132
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=1.3e-19 Score=113.10 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++ +|+..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999954 46789999999999999999998 9999999999999875
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=9.5e-20 Score=119.34 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.+.++|||+|||+.+|+++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999877 567788999999999999999999999999999999999998654
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=119.42 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec----CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.+.++|||+|||+++|+++|+++|+.|| |..|.+.. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8643
No 135
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=6e-20 Score=118.85 Aligned_cols=78 Identities=33% Similarity=0.612 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
++|||+|||+++++++|+++|+.||.|..|.+..+ +.++|||||+|.+.+ |.+|+..|||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999654 778999999999999 99999999999999999999998754
Q ss_pred CC
Q 027194 84 RG 85 (226)
Q Consensus 84 ~~ 85 (226)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 136
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.1e-20 Score=119.88 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEe---cCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|..||.|..+.+. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999765553 35677999999999999999999999999999999999998
Q ss_pred cC
Q 027194 81 HG 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=6.9e-20 Score=119.77 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|..||.|..+.+.. ++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4568999999999999999999999999998766643 5677899999999999999999999999999999999987
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2.1e-19 Score=124.84 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999964 4688999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=4.5e-19 Score=119.01 Aligned_cols=75 Identities=31% Similarity=0.651 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 5 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
++++|||+|||++ +|+++|+++|..||.|..|.+. +|||||+|.+.++|++|+..||+..+.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999999754
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-19 Score=118.64 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..+++|||+|||+++|+++|+++|..||.|..|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 5689999999999999999999999999999999998753
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=113.12 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|++|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999888 9999999999986
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=117.89 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++++|||+|||+++|+++|+++|..|+.|.-+.-..++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 36789999999999999999999999886544443344677889999999999999999999999999999999999976
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=126.94 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
+.++++|||+|||+++|+++|+.+|..||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 468899999999999999999999999998875 555668899999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 027194 75 LRVELAHGGR 84 (226)
Q Consensus 75 i~v~~~~~~~ 84 (226)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997544
No 144
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.3e-19 Score=116.23 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999987 77754 578899999999999999999996 999999999999998
Q ss_pred cCC
Q 027194 81 HGG 83 (226)
Q Consensus 81 ~~~ 83 (226)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 643
No 145
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=124.34 Aligned_cols=78 Identities=35% Similarity=0.633 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+.+|+++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 357899999999999999999999999999999999654 77899999999999999999999999999999999987
Q ss_pred c
Q 027194 80 A 80 (226)
Q Consensus 80 ~ 80 (226)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 146
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=119.24 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|+.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999664 67899999999999999999996 9999999999999987
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6544
No 147
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=113.98 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|..| .|..|.+.. ++.++|||||+|.+.++|++|+. ||+..+.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 568999999999999999999999999 999999965 46778999999999999999999 99999999999999987
Q ss_pred CC
Q 027194 82 GG 83 (226)
Q Consensus 82 ~~ 83 (226)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=7.1e-19 Score=124.61 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|+..|||..+.|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 5899999999999999999999999999999999998653
No 149
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=118.68 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCC--------CCc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--------~g~ 73 (226)
.+.++|||+|||+++|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5679999999999999999999999999999999965 467789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 027194 74 RLRVELAHG 82 (226)
Q Consensus 74 ~i~v~~~~~ 82 (226)
+|.|.++.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999864
No 150
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=120.12 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..+.++|||+|||+++|+++|+++|..||.| ..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3578999999999999999999999999999 7888854 578899999999999999999996 99999999999999
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 151
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=119.24 Aligned_cols=77 Identities=30% Similarity=0.479 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC---CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
..++|||+|||+++|+++|+++|..||.|..|.+..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999653 678999999999999999999 799999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=8.2e-19 Score=112.92 Aligned_cols=78 Identities=32% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
++++++|||+|||+++|+++|+++|..| .|..+.+. .++|||||+|.+.++|++|+..|||..+.|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3578999999999999999999999999 99999885 6689999999999999999999999999999999999864
Q ss_pred CC
Q 027194 83 GR 84 (226)
Q Consensus 83 ~~ 84 (226)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 33
No 153
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-19 Score=119.62 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998877222 2357889999999999999999999 99999999999999987
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 154
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.3e-18 Score=119.27 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999999954 5788999999999999999999 699999999999999987
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 155
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.2e-19 Score=126.50 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.++++|||+|||+.+|+++|+.+|..||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677899999999999999999999999999999999998
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 75443
No 156
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=115.54 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|..||.+ .|.|.. ++.++|||||+|.+.++|++|++ +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999954 888854 57789999999999999999996 89999999999999986
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 157
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=3.9e-19 Score=110.96 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999965 36789999999999999999999 5899999999999875
No 158
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=108.49 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=67.1
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhhhc-CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 4 ~~~~~-l~v~nlp~~~t~~~----l~~~f~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
.|+.+ |||+|||..+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|++|++.|||..+.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999988 55899999 599988 33 99999999999999999999999999999999
Q ss_pred EEccCCCC
Q 027194 78 ELAHGGRG 85 (226)
Q Consensus 78 ~~~~~~~~ 85 (226)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99976543
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=4.2e-19 Score=120.56 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
.+.++|||+|||+++|+++|+++|..||. |..|.|.. ++.++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88888854 47788999999999999999999 99999999999999
Q ss_pred Ecc
Q 027194 79 LAH 81 (226)
Q Consensus 79 ~~~ 81 (226)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 885
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.6e-18 Score=117.14 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce-----EEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-----LRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~ 78 (226)
+..++|||+|||+++|+++|+++|..||.|..|.+..+ |||||+|.+.++|++|++.|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999755 99999999999999999999999999998 7777
Q ss_pred EccCC
Q 027194 79 LAHGG 83 (226)
Q Consensus 79 ~~~~~ 83 (226)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76543
No 161
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=4.4e-19 Score=122.85 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88888864 37789999999999999999999 99999999999999
Q ss_pred Ecc
Q 027194 79 LAH 81 (226)
Q Consensus 79 ~~~ 81 (226)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=2e-18 Score=125.34 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999965 47789999999999999999999999999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 4
No 163
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=111.26 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|| ++|+++|+++|..||.|..|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57789999996 89999999999999999999995 56899999999999999999999999999999999999765
Q ss_pred CC
Q 027194 84 RG 85 (226)
Q Consensus 84 ~~ 85 (226)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=112.12 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-EecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..+++|||+|||+++|+++|+++|..||.|..|. +..+. ..+.|||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999995 65543 245599999999999999999999999999999999875
Q ss_pred C
Q 027194 83 G 83 (226)
Q Consensus 83 ~ 83 (226)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=111.91 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
...++|||+|||+++|+++|+++|..||.|..|.+... ..+ ||||+|.+.++|.+|+. |||..+.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 46789999999999999999999999999999833221 112 99999999999999999 9999999999999987644
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=119.60 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-E--ecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-L--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|..||.|..+. + ..++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999999999999999999999987633 3 3467889999999999999999999 9999999999999987
Q ss_pred c
Q 027194 81 H 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=114.60 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++|||+|||+++|+++|+++|..| .|..|.|.. ++.++|||||+|.+.++|++|+. +|+..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999964 47889999999999999999995 99999999999998875
No 168
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=8.2e-19 Score=117.11 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
..+.++|||+|||+++|+++|+++|..||. |..|.+..+ +.++|||||+|.+.++|++|+. +|+..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357889999999999999999999999998 899998553 7789999999999999999999 9999999999999
Q ss_pred EEcc
Q 027194 78 ELAH 81 (226)
Q Consensus 78 ~~~~ 81 (226)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 169
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=5.3e-18 Score=121.95 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=69.3
Q ss_pred EEEcCHHHHHHHHHhcCCCCCC--CceEEEEEccCCCCCCCCCCCC-CCCCCCCCCCCCCCcceEEecCCCCCCCHHHHH
Q 027194 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRHS-SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (226)
Q Consensus 50 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (226)
.+|.+.++|..|+..+++.... |+.+...++............. .............+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999986665 6666665533211100000000 000011122234567899999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 127 DHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 127 ~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
++|..||.|..|.++.+..+ |||||+|.+.++|..|+..|||..|.|+ .|.+....+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a~~ 151 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ----TIQVDWCFV 151 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECEEEESEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE----EEEEEEecC
Confidence 99999999999999988643 5999999999999999999999999995 455555543
No 170
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=9.5e-18 Score=110.16 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=68.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
.+++|||+|||..+++++|+++|+.||.|..+.+..++.+ |||||+|.+.++|.+|++.|||..+.| ..|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 4568999999999999999999999999999999987654 499999999999999999999999999 46666
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
..++|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 66654
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=3.5e-18 Score=109.70 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
+++.++|||+|||+++|+++|+++|..| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999998744 899999999999999999 89999999
Q ss_pred CceEEEEE
Q 027194 72 GHRLRVEL 79 (226)
Q Consensus 72 g~~i~v~~ 79 (226)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 172
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2.6e-18 Score=119.34 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=70.4
Q ss_pred CceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHH
Q 027194 45 PGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (226)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 124 (226)
-.++|++|++...+..|+..++|....|+.- +. .........+.++|||+|||..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~-------------------~~~~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS-------------------YGRPPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp --------------------------------CC-------------------SCCSCSSGGGCCCEEEECCCSSCHHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CC-------------------cCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 3578999999999999999998866554421 00 011123345677899999999999999
Q ss_pred HHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 125 LKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 125 l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
|+++|+.||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.|+ .+.+...++
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~----~l~V~~a~~ 126 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARY 126 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS----CCEEEECCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEECCC
Confidence 999999999999999987643 46999999999999999999999999995 555555554
No 173
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.2e-18 Score=130.09 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++|||+|||+++|+++|+++|..|| .|..|.|.. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 578899999999999999999999999999999999999
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=1.6e-17 Score=117.34 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEEccCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (226)
.+|||+||++.+|+++|+++|+.||.|..|.+... .++|||||+|.+.++|++|++.|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 45789999999999999999999999999998543 357899999999999999999999999965 999999998654
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-19 Score=119.24 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCe----eEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (226)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999975 5787754 578899999999999999999995 999999999999
Q ss_pred EEcc
Q 027194 78 ELAH 81 (226)
Q Consensus 78 ~~~~ 81 (226)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 176
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=110.69 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=68.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
....+|||+|||..+++++|+++|+.||.|..+.+..+. ..|||||+|.+.++|.+|++.|||..+.|+ .+.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~----~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK----AIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS----BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE----EEEE
Confidence 456789999999999999999999999999999998876 336999999999999999999999999995 4555
Q ss_pred eeecCC
Q 027194 183 REYDHR 188 (226)
Q Consensus 183 ~~~~~~ 188 (226)
..+.+.
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 555543
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=1.4e-18 Score=120.62 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 67888854 4788999999999999999999 699999999999999987
Q ss_pred CCC
Q 027194 82 GGR 84 (226)
Q Consensus 82 ~~~ 84 (226)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=109.91 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
+.++++|||+|||+++|+++|+++|..||.|..|.+..+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999754 689999999999999865331 3455899999998875
Q ss_pred CCC
Q 027194 83 GRG 85 (226)
Q Consensus 83 ~~~ 85 (226)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.2e-17 Score=110.58 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCC-----CCCHHHHHHHhhhcCCeeEEEEecC----CCCCceEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
+..++++|+|.||.. +-++++|+++|++||.|..|.+..+ +.++|+|||+|.+.++|.+|+..|||..+.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999999963 2478999999999999999999654 4779999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 027194 73 HRLRVELAH 81 (226)
Q Consensus 73 ~~i~v~~~~ 81 (226)
+.|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999985
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=4.5e-18 Score=115.99 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCee--EEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++|++ +++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 566 888854 47889999999999999999999 588999999999988
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 181
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-19 Score=122.98 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
..++++|||+|||+.+|+++|+++|+.||.|.. |.+.. ++.++|||||+|.+.++|++|+..||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 77754 3678999999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 027194 72 GHRLRVELAHGGRG 85 (226)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (226)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999876543
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=107.74 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=62.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCC--CCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~~ 81 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|++ +++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999764 79999999999999984 44544 459999999986
Q ss_pred CC
Q 027194 82 GG 83 (226)
Q Consensus 82 ~~ 83 (226)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 43
No 183
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.2e-17 Score=113.91 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCce-EEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEEccCCC
Q 027194 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (226)
Q Consensus 8 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (226)
.|||+||++.+|+++|+++|+.||.|..|.+... .+|+ |||+|.+.++|++|++.|||..|.| +.|.|++++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4569999999999999999999999999988653 3677 9999999999999999999999988 999999998654
No 184
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=1.1e-17 Score=111.80 Aligned_cols=79 Identities=30% Similarity=0.559 Sum_probs=69.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
+...++|||+|||+.+++++|+++|..|| .|..+.+......|||||+|.+.++|.+|++.|||..+.| +.|++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34567899999999999999999999999 8999998766677899999999999999999999999999 566666
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
.+..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 6543
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3e-17 Score=111.44 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCce--EEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCce-EEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEEE
Q 027194 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (226)
Q Consensus 5 ~~~~--l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (226)
|+++ |||+|||+.+|+++|+++|+.||.|..|.+... .|+ |||+|.+.++|..|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 568999999999999999999999999999642 485 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 027194 80 AHGGR 84 (226)
Q Consensus 80 ~~~~~ 84 (226)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.4e-18 Score=113.15 Aligned_cols=78 Identities=23% Similarity=0.498 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+. ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999965 46778999999999999999999 9999999999999886
Q ss_pred CC
Q 027194 82 GG 83 (226)
Q Consensus 82 ~~ 83 (226)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 187
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=3.9e-17 Score=112.21 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=65.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
..+.++|||.|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+.|+.+..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34677999999999999999999999999999999987753 469999999999999999999999999965433
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=109.74 Aligned_cols=74 Identities=34% Similarity=0.547 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC------CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
..++++|||+|||+++|+++|+++|+.||.|. +.+..+ +.++|||||+|.+.++|++|++.|++ ++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 36789999999999999999999999999999 666442 57899999999999999999998832 5556555
Q ss_pred EEE
Q 027194 77 VEL 79 (226)
Q Consensus 77 v~~ 79 (226)
+..
T Consensus 82 ~~~ 84 (114)
T 2dnl_A 82 CVS 84 (114)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.4e-17 Score=122.67 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4668999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 027194 81 HGGRG 85 (226)
Q Consensus 81 ~~~~~ 85 (226)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76544
No 190
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=2.9e-17 Score=111.80 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++++|||+|| ++|+++|+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 69999999999999999999996 56899999999999999999999999999999999999754
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-16 Score=105.28 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
....+.++|||.|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|.+|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999876543 5799999999999999999999999999 5667
Q ss_pred EeeecCCCCC
Q 027194 182 VREYDHRRDG 191 (226)
Q Consensus 182 ~~~~~~~~~~ 191 (226)
+....+.+.+
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 7777664443
No 192
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.6e-17 Score=118.15 Aligned_cols=79 Identities=25% Similarity=0.479 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
..++++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 35678999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred cc
Q 027194 80 AH 81 (226)
Q Consensus 80 ~~ 81 (226)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 193
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=106.71 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=72.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+...+..+|||+|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR---- 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB----
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc----
Confidence 3445678999999999999999999999999999999987654 46999999999999999999999999995
Q ss_pred EEEEeeecCCCCC
Q 027194 179 YVRVREYDHRRDG 191 (226)
Q Consensus 179 ~i~~~~~~~~~~~ 191 (226)
.+.+..+.+.+..
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 84 ELRVQVARYGRRD 96 (103)
T ss_dssp CCEEEECSSCCSC
T ss_pred EEEEEECCcCCCC
Confidence 5566666554433
No 194
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-16 Score=103.27 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....+.++|||+|||..+++++|+++|..||.|..+.++.+.. .++|||+|.+.++|.+|+..|||..+.| ..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3445678999999999999999999999999999999987754 5699999999999999999999999999 566
Q ss_pred EEeeecCCCC
Q 027194 181 RVREYDHRRD 190 (226)
Q Consensus 181 ~~~~~~~~~~ 190 (226)
.+....+...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 6676665433
No 195
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=105.58 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeC--CCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....+.++|||+|||..+++++|+++|..||.|..+.+..+ ...+||||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK----PL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS----BC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc----EE
Confidence 34457789999999999999999999999999999999877 2335999999999999999999999999995 55
Q ss_pred EEeeecCCC
Q 027194 181 RVREYDHRR 189 (226)
Q Consensus 181 ~~~~~~~~~ 189 (226)
.+....+..
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 556655533
No 196
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-16 Score=102.81 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=72.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
...+..+|||+|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 345678999999999999999999999999999999988654 3699999999999999999999999999 5677
Q ss_pred EeeecCCCC
Q 027194 182 VREYDHRRD 190 (226)
Q Consensus 182 ~~~~~~~~~ 190 (226)
+....+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 777766433
No 197
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-17 Score=105.38 Aligned_cols=78 Identities=8% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC--cccccceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~--~~~~g~~~~~~i~~ 182 (226)
+.+.++|||+|||+.+++++|+++|+.||.|..+.++.+ .|||||+|.+.++|..|++.|++ ..+.| +.+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 346778999999999999999999999999999999876 47999999999999999998864 78899 46666
Q ss_pred eeecCC
Q 027194 183 REYDHR 188 (226)
Q Consensus 183 ~~~~~~ 188 (226)
....++
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 666553
No 198
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=3.1e-17 Score=122.82 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
..++|||+|||+.+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|.|++|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4678999999999999999999999999999999653 45689999999999999999999999999999999999864
No 199
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=102.93 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||.|||..+++++|+++|+.||.|..+.+..+.. .++|||+|.+.++|.+|+..|||..+.|+ .++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR----PMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS----CCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc----EEE
Confidence 3567899999999999999999999999999999988754 46999999999999999999999999995 556
Q ss_pred EeeecCCCCC
Q 027194 182 VREYDHRRDG 191 (226)
Q Consensus 182 ~~~~~~~~~~ 191 (226)
+....+...+
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 6666554443
No 200
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=1.5e-16 Score=99.99 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=64.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
....|+|+||++.+++++|+++|.+||.|..+.+.. ..|||||+|.+.++|.+|++.||+..+.|+ .|++..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr----~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANT----TIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTE----EEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCc----EEEEEEC
Confidence 345799999999999999999999999999999866 468999999999999999999999999995 5555443
No 201
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=3.1e-17 Score=123.43 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCC----
Q 027194 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---- 70 (226)
.++++|||+|||..+ ++++|+.+|+.||.|..|.|.. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 7999999999999999999984 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCCCC
Q 027194 71 --------DGHRLRVELAHGGRG 85 (226)
Q Consensus 71 --------~g~~i~v~~~~~~~~ 85 (226)
.|+.|.|.|+...+.
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp STTGGGGGGSCCCEEEECC----
T ss_pred cccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 202
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-16 Score=102.67 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+..+|||+|||..+++++|+++|..||.|..+.+..+. ..+||||+|.+.++|.+|+..|||..+.| ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 466789999999999999999999999999999998776 34699999999999999999999999999 4667
Q ss_pred EeeecCCCCC
Q 027194 182 VREYDHRRDG 191 (226)
Q Consensus 182 ~~~~~~~~~~ 191 (226)
+....+....
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 7776664443
No 203
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=5.7e-16 Score=104.62 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|.+|++.|||..+.| ..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3346689999999999999999999999999999999987644 499999999999999999999999999 56
Q ss_pred EEEeeecCCCCC
Q 027194 180 VRVREYDHRRDG 191 (226)
Q Consensus 180 i~~~~~~~~~~~ 191 (226)
+++....+...+
T Consensus 97 l~V~~a~~~~~~ 108 (115)
T 2cpz_A 97 LKVQLKRSKNDS 108 (115)
T ss_dssp CEEECCCCSCCC
T ss_pred EEEEEcCCCCcC
Confidence 677776654443
No 204
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=107.07 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCC-----------CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 4 RASRTLYVGNLPGDI-----------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~-----------t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
.++++|+|.||.... ++++|+++|+.||.|..|.| .+..++|||||+|.+.++|.+|+..|||..+.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 579999999994332 25899999999999999966 555689999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 027194 73 HRLRVELAHGGR 84 (226)
Q Consensus 73 ~~i~v~~~~~~~ 84 (226)
++|.|.++.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999986543
No 205
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-16 Score=101.15 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=68.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+.++|||+|||..+++++|+++|..||.|..+.+. .+||||+|.+.++|.+|+..|||..+.|+ .+++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----NINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCc----EEEEEE
Confidence 3467799999999999999999999999999999988 46999999999999999999999999995 566666
Q ss_pred ecCCCCC
Q 027194 185 YDHRRDG 191 (226)
Q Consensus 185 ~~~~~~~ 191 (226)
..+....
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 6554443
No 206
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=1.2e-15 Score=103.02 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
....+.++|||+|||..+++++|+++|..||.|..+.++.+... +||||+|.+.++|.+|++.|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----R 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34457789999999999999999999999999999999987643 599999999999999999999999999 4
Q ss_pred EEEEeeecCCCC
Q 027194 179 YVRVREYDHRRD 190 (226)
Q Consensus 179 ~i~~~~~~~~~~ 190 (226)
.|.+....+...
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 666676655433
No 207
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=102.92 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=70.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+..+|||+|||..+++++|+++|..||.|..+.++.++. .+||||+|.+.++|.+|++ ||+..+.|+ .
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~----~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK----K 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC----B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe----E
Confidence 345678999999999999999999999999999999987753 4699999999999999999 999999995 5
Q ss_pred EEEeeecCCCCC
Q 027194 180 VRVREYDHRRDG 191 (226)
Q Consensus 180 i~~~~~~~~~~~ 191 (226)
+.+....+....
T Consensus 81 l~V~~a~~~~~~ 92 (99)
T 2dgs_A 81 VEVKRAEPRDSK 92 (99)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCccc
Confidence 566666554433
No 208
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-16 Score=103.57 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=72.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||+|||..+++++|+++|..||.|..+.++.+... +||||+|.+.++|.+|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 3456789999999999999999999999999999999887643 499999999999999999999999999 56
Q ss_pred EEEeeecCCCCC
Q 027194 180 VRVREYDHRRDG 191 (226)
Q Consensus 180 i~~~~~~~~~~~ 191 (226)
+.+....+...+
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 667766654433
No 209
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=104.41 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=72.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
..+.++|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+.| ..+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 34677899999999999999999999999999999977643 4699999999999999999999999999 577
Q ss_pred EEeeecCCCCC
Q 027194 181 RVREYDHRRDG 191 (226)
Q Consensus 181 ~~~~~~~~~~~ 191 (226)
.+..+.+...+
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 77777665444
No 210
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=4.4e-17 Score=118.20 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccC
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (226)
.+.++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999887 66788999999999999999999999999999999999999864
No 211
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-16 Score=103.48 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=68.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
..+..+|||.|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+.|+. +
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~----l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ----I 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC----C
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE----E
Confidence 44677999999999999999999999999999999988753 469999999999999999999999999954 4
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
++....+
T Consensus 85 ~v~~a~~ 91 (102)
T 1x5s_A 85 RVDQAGK 91 (102)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
Confidence 5555544
No 212
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-16 Score=100.67 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
...+.++|||+|||..+++++|+++|+.||.|..+.+..+ ||||+|.+.++|.+|+..|||..+.| ..+.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456789999999999999999999999999999999855 99999999999999999999999999 577777
Q ss_pred eecCCCCC
Q 027194 184 EYDHRRDG 191 (226)
Q Consensus 184 ~~~~~~~~ 191 (226)
...+....
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 77664443
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=1.5e-16 Score=107.38 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=67.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
...+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+.|+ .|.+..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~----~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR----KVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEE
Confidence 3557999999999999999999999999999999887653 5999999999999999999999999994 556665
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
..+
T Consensus 80 a~~ 82 (115)
T 4f25_A 80 FKS 82 (115)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 214
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=105.72 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+..+|||+|||+.+++++|+++|+.||.|..+.++.++.+ |||||+|.+.++|.+|++.|||..+.|+ .|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr----~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN----IIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe----EEE
Confidence 35678999999999999999999999999999999988764 5999999999999999999999999995 555
Q ss_pred Eeeec
Q 027194 182 VREYD 186 (226)
Q Consensus 182 ~~~~~ 186 (226)
+..+.
T Consensus 80 V~~a~ 84 (110)
T 3s8s_A 80 AQLDI 84 (110)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 55554
No 215
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4.7e-17 Score=117.06 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
++++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999965 47889999999999999999999 89999999999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=102.88 Aligned_cols=85 Identities=7% Similarity=0.097 Sum_probs=74.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
.+.++|||+|||..+++++|+++|..||.|. .+.++.++.+ +||||+|.+.++|.+|++.|||..+.|+.+...+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4677999999999999999999999999999 9999988644 5999999999999999999999999998765568
Q ss_pred EEeeecCCCC
Q 027194 181 RVREYDHRRD 190 (226)
Q Consensus 181 ~~~~~~~~~~ 190 (226)
++..+++.+.
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 8887766543
No 217
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-16 Score=103.02 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=70.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCCEEEEEeCCHHHHHHHHHHc-CCcccccceee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSR 177 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~a~v~f~~~~~A~~a~~~l-~~~~~~g~~~~ 177 (226)
...+.++|||+|||..+++++|+++|..||.|..+.++.+. ..+||||+|.+.++|.+|+..| |+..+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 44567899999999999999999999999999999998772 3469999999999999999999 99999995
Q ss_pred eEEEEeeecCCC
Q 027194 178 AYVRVREYDHRR 189 (226)
Q Consensus 178 ~~i~~~~~~~~~ 189 (226)
.+.+....+..
T Consensus 88 -~l~v~~a~~~~ 98 (107)
T 2cph_A 88 -RLVLEWADSEV 98 (107)
T ss_dssp -BCEEEECCCCC
T ss_pred -EEEEEeCCCCC
Confidence 55556655533
No 218
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=7.3e-16 Score=101.98 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
.+..+.++|||+|||..+++++|+++|..|| |..+.++.+..+ |||||+|.+.++|.+|+ .|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 4455778999999999999999999999996 999999988653 59999999999999999 899999999 5
Q ss_pred EEEEeeecCCCCC
Q 027194 179 YVRVREYDHRRDG 191 (226)
Q Consensus 179 ~i~~~~~~~~~~~ 191 (226)
.|.+....+....
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2dng_A 84 SLRVDIAEGRKQD 96 (103)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 6667766654443
No 219
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=102.89 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=69.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-------CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 567899999999999999999999999999999987654 3699999999999999999999999999 56
Q ss_pred EEEeeecCCCC
Q 027194 180 VRVREYDHRRD 190 (226)
Q Consensus 180 i~~~~~~~~~~ 190 (226)
+.+....+...
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 66776655433
No 220
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=101.31 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=67.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
..++|||+|||..+++++|+++|..||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..+.|+ .+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ----EIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe----EEE
Confidence 35689999999999999999999999999999998776 457999999999999999999999999995 555
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+....+
T Consensus 79 v~~a~~ 84 (88)
T 4a8x_A 79 ATAVLA 84 (88)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 555544
No 221
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-16 Score=103.09 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=70.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-----CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.+..+.++|||+|||..+++++|+++|..|| |..+.++.+.. .+||||+|.+.++|.+|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3445678999999999999999999999999 99999987754 469999999999999999 899999999
Q ss_pred eEEEEeeecCCCCC
Q 027194 178 AYVRVREYDHRRDG 191 (226)
Q Consensus 178 ~~i~~~~~~~~~~~ 191 (226)
..+.+....+....
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 46666666554433
No 222
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=6.5e-17 Score=116.88 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
+.++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4677899999999999999999999999999999999987
No 223
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.1e-16 Score=118.39 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (226)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 027194 81 HGGR 84 (226)
Q Consensus 81 ~~~~ 84 (226)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 224
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-16 Score=101.81 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
.....++|||+|||..+++++|+++|..||.|. +.++.+...+||||+|.+.++|..|+..|||..+.|+ .+.+.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD----TLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS----CCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEE
Confidence 345577999999999999999999999999987 6777777788999999999999999999999999995 45555
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
...+
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 5544
No 225
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.3e-15 Score=100.84 Aligned_cols=76 Identities=9% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
.+.++|||.|||..+++++|+++|..||.|..+.++++ ||||+|.+.++|.+|+..|||..+.| ..+.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 45678999999999999999999999999999998744 99999999999999999999999999 46666666
Q ss_pred cCCC
Q 027194 186 DHRR 189 (226)
Q Consensus 186 ~~~~ 189 (226)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5533
No 226
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-16 Score=100.89 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCcceEEecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCC-CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...++|||+|||..+++++|+ ++|..||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+.| ..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 456789999999999999999 9999999999999987654 5799999999999999999999999999 567
Q ss_pred EEeeecCC
Q 027194 181 RVREYDHR 188 (226)
Q Consensus 181 ~~~~~~~~ 188 (226)
++..+.+.
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 77776553
No 227
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-16 Score=103.69 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
.+.++|||+|||..+++++|+++|..||.|..+.+..+ .+||||+|.+.++|.+|+..|||..+.| ..+.+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 46779999999999999999999999999999999877 5799999999999999999999999999 56666766
Q ss_pred cCCCCC
Q 027194 186 DHRRDG 191 (226)
Q Consensus 186 ~~~~~~ 191 (226)
++....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 654433
No 228
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=103.33 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCcceEEecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCc--ccccceeeeEEEE
Q 027194 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (226)
Q Consensus 106 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~--~~~g~~~~~~i~~ 182 (226)
.+..+|||+|||+ .+++++|+++|..||.|..+.++.++ ++|||+|.+.++|..|++.||+. .+.|+ .|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr----~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGK----PVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTE----ECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCc----EEEE
Confidence 4678999999999 99999999999999999999998765 69999999999999999999865 48894 5566
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
..+..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 66553
No 229
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-15 Score=102.56 Aligned_cols=84 Identities=10% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcC------Cccccc
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLD------DSEFRN 173 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~------~~~~~g 173 (226)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345678999999999999999999999999999999987754 4699999999999999999999 999999
Q ss_pred ceeeeEEEEeeecCCCCC
Q 027194 174 AFSRAYVRVREYDHRRDG 191 (226)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~ 191 (226)
..+.+....+....
T Consensus 91 ----~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 ----RQLKVDLAVTRDEA 104 (111)
T ss_dssp ----CEEEEECCCCCCCC
T ss_pred ----EEEEEEECCCCccC
Confidence 46677776654443
No 230
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-15 Score=99.76 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
....+..+|||.|||..+++++|+++|..||.|..+.+..++.+ ++|||+|.+.++|.+|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 44567889999999999999999999999999999999887653 599999999999999999999999999 4
Q ss_pred EEEEeeec
Q 027194 179 YVRVREYD 186 (226)
Q Consensus 179 ~i~~~~~~ 186 (226)
.+.+..++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 56665543
No 231
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.7e-16 Score=114.18 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC--ceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 78 (226)
.++++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 46678999999999999999999999999988 999998
Q ss_pred Ec
Q 027194 79 LA 80 (226)
Q Consensus 79 ~~ 80 (226)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 232
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.8e-16 Score=100.70 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=68.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc--cceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~--g~~~~~~i~~ 182 (226)
..+.++|||.|||..+++++|+++|+.||.|..+.+..+ .+||||+|.+.++|.+|++.|||..+. |+ .+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~----~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDR----RLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC----BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc----EEEE
Confidence 345678999999999999999999999999999998876 569999999999999999999999999 74 5555
Q ss_pred eeecCC
Q 027194 183 REYDHR 188 (226)
Q Consensus 183 ~~~~~~ 188 (226)
..+.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 665543
No 233
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-15 Score=100.36 Aligned_cols=78 Identities=9% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHc--CCcccccceeeeEEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL--DDSEFRNAFSRAYVR 181 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l--~~~~~~g~~~~~~i~ 181 (226)
...+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .|+|||+|.+.++|..|++.| ++..+.| ..+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEE
Confidence 3456789999999999999999999999999999988876 579999999999999999977 4677899 4566
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+....+
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 666654
No 234
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=5.5e-16 Score=103.13 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=70.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccc---cccee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFS 176 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~---~g~~~ 176 (226)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|+..|||..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~-- 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR-- 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc--
Confidence 345678999999999999999999999999999999988654 46999999999999999999999987 774
Q ss_pred eeEEEEeeecCCCCC
Q 027194 177 RAYVRVREYDHRRDG 191 (226)
Q Consensus 177 ~~~i~~~~~~~~~~~ 191 (226)
.+.+....+...+
T Consensus 87 --~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 --PIQVKPADSESRG 99 (106)
T ss_dssp --CCEEEECCCCSCC
T ss_pred --eEEEEECCccccc
Confidence 5556666554433
No 235
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-15 Score=99.71 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=71.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...+..+|||+|||..+++++|+++|..||.|..+.+..+..+ ++|||+|.+.++|.+|+..|||..+.| ..+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3456778999999999999999999999999999999987632 599999999999999999999999999 466
Q ss_pred EEeeecCCC
Q 027194 181 RVREYDHRR 189 (226)
Q Consensus 181 ~~~~~~~~~ 189 (226)
.+....+..
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 666665543
No 236
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-16 Score=99.69 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=67.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+.++|||+|||..+++++|+++|..||.|..+.+..+ ||||+|.+.++|.+|+..|||..+.| ..+.+..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 346678999999999999999999999999999999855 99999999999999999999999999 4666666
Q ss_pred ecCC
Q 027194 185 YDHR 188 (226)
Q Consensus 185 ~~~~ 188 (226)
..+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6554
No 237
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.6e-16 Score=115.08 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCC---CceEEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~ 79 (226)
+.++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999965 4667899999999999999999999998776 49999998
Q ss_pred c
Q 027194 80 A 80 (226)
Q Consensus 80 ~ 80 (226)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 238
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-16 Score=101.71 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||+|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK----P 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC----B
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe----E
Confidence 345678999999999999999999999999999999988763 35999999999999999999999999995 5
Q ss_pred EEEeeecCC
Q 027194 180 VRVREYDHR 188 (226)
Q Consensus 180 i~~~~~~~~ 188 (226)
+.+....+.
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 566666553
No 239
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.5e-17 Score=108.39 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.4
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcC----HHH----HHHHHH--hcCCCC
Q 027194 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (226)
Q Consensus 7 ~~l~v~nl----p~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 69 (226)
..|||+|| |+.+++.+|+++|+.||+|..|.+.. +|.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999965 47889999999996 333 888988 789999
Q ss_pred CCCceEEEEEcc
Q 027194 70 FDGHRLRVELAH 81 (226)
Q Consensus 70 ~~g~~i~v~~~~ 81 (226)
|.|++|.|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 240
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=116.78 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999965 467899999999999999999995 8999999999999987
Q ss_pred CCCC
Q 027194 82 GGRG 85 (226)
Q Consensus 82 ~~~~ 85 (226)
+...
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6544
No 241
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-16 Score=101.67 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=68.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
+.++|||+|||..+++++|+++|..||.|..+ .++.++. .+||||+|.+.++|.+|+..|||..+.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 56789999999999999999999999999998 8887643 4699999999999999999999999999 4666
Q ss_pred EeeecCCC
Q 027194 182 VREYDHRR 189 (226)
Q Consensus 182 ~~~~~~~~ 189 (226)
+....+..
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 66665533
No 242
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-15 Score=100.53 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=69.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...+.++|||.|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR----PM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE----EC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC----EE
Confidence 3456789999999999999999999999999999999887653 4999999999999999999999999995 55
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
.+.....
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 5555543
No 243
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=1.4e-15 Score=100.99 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCccccc---ceeeeE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRN---AFSRAY 179 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g---~~~~~~ 179 (226)
.+.++|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|.+|+..|||..+.| +.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~---- 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS---- 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc----
Confidence 45789999999999999999999999999999999988642 599999999999999999999999987 53
Q ss_pred EEEeeecCC
Q 027194 180 VRVREYDHR 188 (226)
Q Consensus 180 i~~~~~~~~ 188 (226)
+.+..+.+.
T Consensus 89 l~V~~a~~~ 97 (105)
T 2dnh_A 89 LVVKFADTD 97 (105)
T ss_dssp CEEEESCSS
T ss_pred EEEEECccC
Confidence 444555443
No 244
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-15 Score=100.82 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=70.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcc-cccceeee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSRA 178 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~-~~g~~~~~ 178 (226)
...+.++|||+|||..+++++|+++|.. ||.|..+.++.+.. .+||||+|.+.++|.+|+..|||.. +.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~---- 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK---- 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE----
Confidence 3456788999999999999999999999 99999999998763 2499999999999999999999999 9995
Q ss_pred EEEEeeecCCC
Q 027194 179 YVRVREYDHRR 189 (226)
Q Consensus 179 ~i~~~~~~~~~ 189 (226)
.+.+..+.+..
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 45555554433
No 245
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=102.63 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=67.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecCC
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 188 (226)
++|||+|||..+++++|+++|+.||.|..+.+..+ ..++|||+|.+.++|.+|+..|||..+.|+ .+.+....+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGS----RVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSC----CCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCc----EEEEEEccCC
Confidence 47999999999999999999999999999999888 667999999999999999999999999995 4556665543
No 246
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.7e-16 Score=115.70 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=69.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (226)
.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..+ +..+.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999965 4677899999999999999999855 56899999999998654
Q ss_pred C
Q 027194 84 R 84 (226)
Q Consensus 84 ~ 84 (226)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 247
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-15 Score=103.13 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
.......+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|.+|+..|||..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 34456789999999999999999999999999999999888653 5999999999999999999999999994
Q ss_pred EEEEeeecCCC
Q 027194 179 YVRVREYDHRR 189 (226)
Q Consensus 179 ~i~~~~~~~~~ 189 (226)
.|.+..+.+..
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 66677665543
No 248
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.8e-16 Score=103.89 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCcceEEecCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCC-------CCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 105 RRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~-------~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
.....+|||+|||+.+++++|+ ++|..||.|..+.+..+.. .|||||+|.+.++|.+|++.|||..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456789999999999999999 9999999999999987754 2699999999999999999999999999
Q ss_pred eeeeEEEEeeecCCC
Q 027194 175 FSRAYVRVREYDHRR 189 (226)
Q Consensus 175 ~~~~~i~~~~~~~~~ 189 (226)
..+++..+.+..
T Consensus 91 ---r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 ---RTLKASLGTTKY 102 (111)
T ss_dssp ---EEEEEESCCCCS
T ss_pred ---EEEEEEeccccc
Confidence 577777776644
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.1e-15 Score=100.96 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 106 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
...++|||+|||.. +++++|+++|..||.|..+.+ ..+||||+|.+.++|..|+..|||..+.|+ .+.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQ----TLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTE----ECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEE
Confidence 35579999999999 999999999999999999988 356999999999999999999999999994 566666
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
..+
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 250
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=3.2e-16 Score=103.75 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.6
Q ss_pred CCCCceEEEcCC--CCCCC--------HHHHHHHhhhcCCeeEEEEecC-----CCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 3 ~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
+.|+++|.|.|+ |..+. .++|++.|++||.|..|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 579999999998 44443 3689999999999999999654 25789999999999999999999999
Q ss_pred CCCCCceEEEEEcc
Q 027194 68 YDFDGHRLRVELAH 81 (226)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (226)
..+.|++|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999874
No 251
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=99.00 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=66.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
....+.++|||.|||..+++++|+++|..||.|..+.+..++. .++|||+|.+.++|.+|++.|||..+.|+.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445678999999999999999999999999999999988654 4699999999999999999999999999543
No 252
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=4.7e-16 Score=103.70 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
...+.++|||+|||..+++++|+++|..||.|..+.+. .|||||+|.+.++|.+|+..|||..+.| ..+.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34567899999999999999999999999999999988 5799999999999999999999999999 566666
Q ss_pred eecCCCC
Q 027194 184 EYDHRRD 190 (226)
Q Consensus 184 ~~~~~~~ 190 (226)
...+...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 6655433
No 253
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-15 Score=98.18 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
..+.++|||+|||..+++++|+++|..| |.|..+.+.+ +||||+|.+.++|.+|+..|||..+.| ..+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3467899999999999999999999999 8999888753 499999999999999999999999999 57777
Q ss_pred eeecCCCC
Q 027194 183 REYDHRRD 190 (226)
Q Consensus 183 ~~~~~~~~ 190 (226)
..+.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 77765443
No 254
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=98.11 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||+|||..+++++|+++|+.||.|..+.+..+..+ |+|||+|.+.++|..|+..|||..+.|+ .+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR----QIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe----EEE
Confidence 35678999999999999999999999999999999887543 5999999999999999999999999995 455
Q ss_pred Eeeec
Q 027194 182 VREYD 186 (226)
Q Consensus 182 ~~~~~ 186 (226)
+..+.
T Consensus 80 v~~a~ 84 (87)
T 3bs9_A 80 TNWAT 84 (87)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 55443
No 255
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-15 Score=102.83 Aligned_cols=83 Identities=7% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
..+.++|||+|||..+++++|+++|..||.| ..+.+......+||||+|.+.++|..|+..|||..+.|+ .+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK----IL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC----BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc----EE
Confidence 3467899999999999999999999999988 667777666778999999999999999999999999995 55
Q ss_pred EEeeecCCCCC
Q 027194 181 RVREYDHRRDG 191 (226)
Q Consensus 181 ~~~~~~~~~~~ 191 (226)
.+..+.+...+
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 66666554443
No 256
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=7.7e-16 Score=100.55 Aligned_cols=77 Identities=10% Similarity=0.236 Sum_probs=68.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
++++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|.+|++.|||..+.| ..+.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 356899999999999999999999999999999987754 4699999999999999999999999999 46666
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
..+.+
T Consensus 77 ~~a~~ 81 (96)
T 2x1f_A 77 GYSSN 81 (96)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 66554
No 257
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=9.4e-16 Score=99.72 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcc--cccceeeeEEEEe
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAFSRAYVRVR 183 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~--~~g~~~~~~i~~~ 183 (226)
.++.+|||+|||..+++++|+++|++||.|..+.+++. .|+|||+|.+.++|..|+..|++.. +.| ..+.+.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 46779999999999999999999999999999988764 4699999999999999999999986 678 466666
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
.+++
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 5543
No 258
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=1.4e-15 Score=96.50 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=66.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
++|||+|||..+++++|+++|..||.|..+.+..++.+ |+|||+|.+.++|..|+..|||..+.|+ .+++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR----PLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc----EEEEEe
Confidence 57999999999999999999999999999999887543 5999999999999999999999999994 556665
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
+.+
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 544
No 259
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.3e-16 Score=111.85 Aligned_cols=77 Identities=31% Similarity=0.589 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec---CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce--EEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--LRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--i~v~ 78 (226)
.+.++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 3568999999999999999999999999999999965 4667899999999999999999999999999965 8887
Q ss_pred Ec
Q 027194 79 LA 80 (226)
Q Consensus 79 ~~ 80 (226)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 260
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=1.1e-15 Score=99.07 Aligned_cols=79 Identities=19% Similarity=0.393 Sum_probs=68.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
..+.++|||+|||..+++++|+++|..||.|..+.+..+. ..++|||+|.+.++|.+|+..|||..+.|+ .+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR----EIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB----CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc----EEEE
Confidence 3467799999999999999999999999999999998753 236999999999999999999999999995 4555
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
....+
T Consensus 81 ~~a~~ 85 (92)
T 2dgv_A 81 RIDRN 85 (92)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 55544
No 261
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=9.6e-16 Score=105.46 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
....+.++|||+|||..+++++|+++|..||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---- 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---- 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 344577899999999999999999999999999999998764 346999999999999999999999999995
Q ss_pred EEEEeeecC
Q 027194 179 YVRVREYDH 187 (226)
Q Consensus 179 ~i~~~~~~~ 187 (226)
.|.+....+
T Consensus 117 ~l~V~~a~~ 125 (129)
T 2kxn_B 117 RIRVDFSIT 125 (129)
T ss_dssp CCEESCCSS
T ss_pred EEEEEEecC
Confidence 555555544
No 262
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=9.7e-16 Score=97.72 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+..+|||+|||..+++++|+++|..||.|..+.++.+.. .++|||+|.+.++|..|++.|||..+.|+.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4667899999999999999999999999999999977643 3599999999999999999999999999544
No 263
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=100.16 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+..+|||+|||..+++++|+++|..||.|..+.+..+ .+||||+|.+.++|.+|++.|||..+.|+ .+.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGK----QLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTB----CCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCc----eEEEEE
Confidence 346679999999999999999999999999999998865 57999999999999999999999999995 555566
Q ss_pred ecCC
Q 027194 185 YDHR 188 (226)
Q Consensus 185 ~~~~ 188 (226)
..+.
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 5553
No 264
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=103.10 Aligned_cols=78 Identities=8% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC--cccccceeeeEEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 181 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~--~~~~g~~~~~~i~ 181 (226)
...+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .|+|||+|.+.++|.+|++.|++ ..+.|+ .|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr----~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ----PIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB----CCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCe----EEE
Confidence 3456789999999999999999999999999999999876 47999999999999999998874 688995 555
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+..+.+
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 555544
No 265
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=2.2e-15 Score=107.29 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=69.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||.|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|.+|+..||+..+.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 46789999999999999999999999999999999988654 499999999999999999999999999 4566
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+..+.+
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 666654
No 266
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=114.95 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (226)
.++++|||+|||+.+|+++|+++|..|| .|..+.+..+. +|+|||+|.+.++|.+|+..|||..+. |++|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 99999996543 799999999999999999999999999 9999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 267
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=6.6e-16 Score=120.39 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (226)
.++++|||+|||..+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 467899999999999999999999999999999998543 689999999999999999999999999 9999999985
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.9e-16 Score=101.20 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
...+.++|||+|||..+++++|+++|..||.|..+........+||||+|.+.++|.+|+..|||..+.| ..+.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEE
Confidence 3456789999999999999999999999998732221122345799999999999999999999999999 567777
Q ss_pred eecCCCC
Q 027194 184 EYDHRRD 190 (226)
Q Consensus 184 ~~~~~~~ 190 (226)
...+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 7766433
No 269
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=101.96 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccc
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
...+.++|||+|||..+++++|+++|..||.|. .+.++.+.. .+||||+|.+.++|.+|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 588887743 46999999999999999999999999
Q ss_pred ccceeeeEEEEeeecCCCCC
Q 027194 172 RNAFSRAYVRVREYDHRRDG 191 (226)
Q Consensus 172 ~g~~~~~~i~~~~~~~~~~~ 191 (226)
.| ..+.+....+....
T Consensus 91 ~g----~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QG----SKLKVSLARKKPPM 106 (113)
T ss_dssp TT----EECEEECSSCCCCS
T ss_pred CC----CEEEEEECCCCCCC
Confidence 99 56677776654433
No 270
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=101.60 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=64.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcC-CcccccceeeeEEEE
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 182 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~-~~~~~g~~~~~~i~~ 182 (226)
.+|||+|||..+++++|+++|+.|| .|..+.++.++. .|||||+|.+.++|.+|++.++ +..+.| ..+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5799999999999999999999999 799999887654 4699999999999999999874 567899 56777
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
..+.+
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 76655
No 271
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-15 Score=99.09 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||.|||..+++++|+++|..||.|..+.++.++.+ +||||+|.+.++|.+|+.. ++..+.| ..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EE
Confidence 4457789999999999999999999999999999999988654 5999999999999999998 9999999 56
Q ss_pred EEEeeecCCCC
Q 027194 180 VRVREYDHRRD 190 (226)
Q Consensus 180 i~~~~~~~~~~ 190 (226)
+.+....+...
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 77777665443
No 272
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-15 Score=98.72 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=65.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCc--ccccceeeeEEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~--~~~g~~~~~~i~~ 182 (226)
..+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .++|||+|.+.++|..|++.|++. .+.|+ .+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr----~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQ----QAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS----BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCE----EEEE
Confidence 346789999999999999999999999999999988765 579999999999999999988765 48885 4555
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
....+
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 55544
No 273
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9e-16 Score=99.62 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=66.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC-cccccceeeeEEEEe
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVR 183 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~-~~~~g~~~~~~i~~~ 183 (226)
.+.++|||+|||..+++++|+++|..||. |..+.+. ..+||||+|.+.++|.+|+..||| ..+.| ..+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 35678999999999999999999999999 6655553 346999999999999999999999 99999 566667
Q ss_pred eecCCCCC
Q 027194 184 EYDHRRDG 191 (226)
Q Consensus 184 ~~~~~~~~ 191 (226)
...+...+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 76654443
No 274
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=1.1e-15 Score=115.59 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (226)
.++++|||+|||+.+|+++|+++|..|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999653 4799999999999999999999999999 9999999986
Q ss_pred C
Q 027194 82 G 82 (226)
Q Consensus 82 ~ 82 (226)
+
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 4
No 275
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-15 Score=99.12 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=66.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
..+.++|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|.+|+..|||..+.|+.+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 346789999999999999999999999999999999987653 5999999999999999999999999996543
No 276
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.5e-15 Score=99.19 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 105 RRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 105 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
..+.++|||+|||. .+++++|+++|..||.|..+.+. .+||||+|.+.++|..|+..|||..+.|+.+..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34677999999998 99999999999999999999885 469999999999999999999999999965544
No 277
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=2.6e-15 Score=100.01 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=67.4
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 102 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
.....+.++|||.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|.+|++.|||..+.|+.+..
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456788999999999999999999999999999999998763 249999999999999999999999999965443
No 278
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=8.9e-15 Score=100.04 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
....+.++|||+|||..+++++|+++|..||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..+.|+ .
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR----P 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc----E
Confidence 345677899999999999999999999999999999998875 346999999999999999999999999995 4
Q ss_pred EEEeeecC
Q 027194 180 VRVREYDH 187 (226)
Q Consensus 180 i~~~~~~~ 187 (226)
+.+..+.+
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 55555443
No 279
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-15 Score=97.78 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=66.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcc
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSE 170 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~ 170 (226)
.+..+.++|||+|||..+++++|+++|+.||.|.. +.+..+..+ |+|||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34557789999999999999999999999999999 999887543 599999999999999999999999
Q ss_pred cccceee
Q 027194 171 FRNAFSR 177 (226)
Q Consensus 171 ~~g~~~~ 177 (226)
+.|+.+.
T Consensus 88 ~~g~~l~ 94 (99)
T 2la6_A 88 FSGNPIK 94 (99)
T ss_dssp SSSSBCE
T ss_pred eCCcEEE
Confidence 9996544
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=98.28 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
....++|||+|||+.+++++|+++|..||.|..+ .++.+...+.|||+|.+.++|..|+..|||..+.|+ .+.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF----TLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEE
Confidence 3456789999999999999999999999999999 588888777899999999999999999999999995 44555
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
...+
T Consensus 88 ~a~~ 91 (96)
T 2e44_A 88 YIPD 91 (96)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 4443
No 281
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=5.1e-16 Score=115.33 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCe--eEEEEecC-CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc----eEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLR 76 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~----~i~ 76 (226)
.|+++|||+|||+.+|+++|+++|+.||.| ..+.+..+ +..+|+|||+|.+.++|.+|+..|||..+.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 367899999999999999999999999999 89988665 45579999999999999999999999999876 577
Q ss_pred EEEc
Q 027194 77 VELA 80 (226)
Q Consensus 77 v~~~ 80 (226)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7664
No 282
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=3.1e-15 Score=101.41 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
....+.++|||+|||..+++++|+++|..||.|..+.+..+.. .|||||+|.+.++|.+|++.|||..+.|+.+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999999999999999987643 46999999999999999999999999996443
No 283
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=2.7e-15 Score=100.45 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.|+ .
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ----T 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc----E
Confidence 345678999999999999999999999999999999987754 36999999999999999999999999994 5
Q ss_pred EEEeeecC
Q 027194 180 VRVREYDH 187 (226)
Q Consensus 180 i~~~~~~~ 187 (226)
+.+....+
T Consensus 98 l~V~~a~~ 105 (110)
T 1oo0_B 98 IQVDWCFV 105 (110)
T ss_dssp CEEEESEE
T ss_pred EEEEEccc
Confidence 55555544
No 284
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=97.30 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...+..+|||.|||..+++++|+++|..||.|..+.+..++. .++|||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR----PI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE----EC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC----EE
Confidence 345678999999999999999999999999999999988765 35999999999999999999999999995 44
Q ss_pred EEeee
Q 027194 181 RVREY 185 (226)
Q Consensus 181 ~~~~~ 185 (226)
.+...
T Consensus 88 ~V~~a 92 (95)
T 2ywk_A 88 NVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 55443
No 285
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.4e-15 Score=99.24 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
....+.++|||.|||..+++++|+++|..||.|..+.++.++. .+||||+|.+.++|.+|+..|++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3445778999999999999999999999999999999988754 46999999999999999999998 8999 4
Q ss_pred EEEEeeecC
Q 027194 179 YVRVREYDH 187 (226)
Q Consensus 179 ~i~~~~~~~ 187 (226)
.+.+..+.+
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 556666543
No 286
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=3.6e-15 Score=97.44 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCCCcceEEecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 104 SRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
...+.++|||+|||. .+++++|+++|..||.|..+.+. .|||||+|.+.++|.+|+..|||..+.|+ .+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGK----KLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTE----ECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCE----EEEE
Confidence 345678999999998 99999999999999999999884 56999999999999999999999999994 5555
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
...++
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 55443
No 287
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=3.6e-15 Score=105.35 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=68.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeec
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
....|||+||++.+++++|+++|+.||.|..+.+......++|||+|.+.++|..|++.|||..|.|.. +.+++...+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEec
Confidence 445789999999999999999999999999999987766779999999999999999999999996511 356667666
Q ss_pred CC
Q 027194 187 HR 188 (226)
Q Consensus 187 ~~ 188 (226)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 288
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.3e-15 Score=94.68 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHc-CCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l-~~~~~~g~~~ 176 (226)
..+..+|||+|||..+++++|+++|..||.|..+.+..+ .++|||+|.+.++|..|+..| +|..+.|+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 356678999999999999999999999999999999875 469999999999999999999 9999999544
No 289
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=98.56 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
..+.++|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|++.|||..+.|+ .+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~----~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR----PM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS----CC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE----EE
Confidence 446789999999999999999999999999999999887553 5999999999999999999999999995 44
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
++....+
T Consensus 99 ~V~~a~~ 105 (108)
T 2jrs_A 99 KVGHVTE 105 (108)
T ss_dssp EEECSCS
T ss_pred EEEEccc
Confidence 5554433
No 290
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=99.30 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+.++|||+|||..+++++|+++|+.||.|..+.+..++. .|||||+|.+.++|..|++.|||..+.|+.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 3567899999999999999999999999999999987754 4699999999999999999999999999544
No 291
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-14 Score=94.63 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+.++|||+|| .+++++|+++|..||.|..+.+. ...++|||+|.+.++|.+|+..|||..+.| ..+.+..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 346779999996 89999999999999999999885 456799999999999999999999999999 5777777
Q ss_pred ecCCCCC
Q 027194 185 YDHRRDG 191 (226)
Q Consensus 185 ~~~~~~~ 191 (226)
..+....
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 7664443
No 292
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.6e-15 Score=95.08 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.....+|||+|||..+++++|+++|..| .|..+.++.+.. .|+|||+|.+.++|.+|+. |||..+.| ..|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEE
Confidence 3466789999999999999999999999 999999988743 3599999999999999999 99999999 5667
Q ss_pred EeeecCC
Q 027194 182 VREYDHR 188 (226)
Q Consensus 182 ~~~~~~~ 188 (226)
+....+.
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 7666543
No 293
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=98.06 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|+. ++|..+.|+.+...
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999988653 4699999999999999999 99999999766544
No 294
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=100.64 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.....++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.|+ .+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR----KIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE----EEE
Confidence 345678999999999999999999999999999999987643 57999999999999999999999999994 555
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+....+
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 555443
No 295
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.8e-15 Score=98.77 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
...++|||+|||..+++++|+++|..||.|..+.+. ...+||||+|.+.++|..|+..|||..+.|+ .+++...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGR----NLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTE----ECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCe----EEEEEec
Confidence 356799999999999999999999999999999887 4457999999999999999999999999994 5555544
Q ss_pred c
Q 027194 186 D 186 (226)
Q Consensus 186 ~ 186 (226)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 296
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=98.28 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
....++|||.|||..+++++|+++|..||.|..+.++.+..+ ++|||+|.+.++|.+|++.|||..+.|+ .+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR----KV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE----EC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe----EE
Confidence 346678999999999999999999999999987666655433 5999999999999999999999999995 55
Q ss_pred EEeeec
Q 027194 181 RVREYD 186 (226)
Q Consensus 181 ~~~~~~ 186 (226)
++....
T Consensus 88 ~V~~a~ 93 (98)
T 2cqp_A 88 KLVLGS 93 (98)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 555543
No 297
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=9.7e-16 Score=98.84 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=62.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|.+|++.|||..+.|+. +.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~----i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN----PVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC----CEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE----EEE
Confidence 4699999999999999999999999 9999999888643 59999999999999999999999999954 444
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
....+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 44433
No 298
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-14 Score=94.01 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=68.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||.|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|+. ++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 3456778999999999999999999999999999999887653 599999999999999999 4678888 56
Q ss_pred EEEeeecCCC
Q 027194 180 VRVREYDHRR 189 (226)
Q Consensus 180 i~~~~~~~~~ 189 (226)
+.+....+..
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 7777766543
No 299
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.5e-15 Score=98.95 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=70.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|+.. ++..+.| ..+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 4567999999999999999999999999999999988754 46999999999999999997 9999999 5777
Q ss_pred EeeecCCCCC
Q 027194 182 VREYDHRRDG 191 (226)
Q Consensus 182 ~~~~~~~~~~ 191 (226)
+....+...+
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 7777664443
No 300
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.7e-15 Score=96.93 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
......++|||+|||+.+++++|+++|..||.|.. +.+..+. ..|||||+|.+.++|.+|+.. |+..++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---- 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR---- 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc----
Confidence 34456789999999999999999999999999987 7776653 346999999999999999997 99999996
Q ss_pred EEEEeeecC
Q 027194 179 YVRVREYDH 187 (226)
Q Consensus 179 ~i~~~~~~~ 187 (226)
+|.+....+
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 445544443
No 301
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-14 Score=94.42 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=65.8
Q ss_pred CCCceEEEcCCC-------CCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEE
Q 027194 4 RASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (226)
Q Consensus 4 ~~~~~l~v~nlp-------~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (226)
...++|.|.-.. ..+|+++|+++|++||.|..|.|. +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 456777777554 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEEccCCCC
Q 027194 77 VELAHGGRG 85 (226)
Q Consensus 77 v~~~~~~~~ 85 (226)
|.|+.....
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999876543
No 302
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=5.4e-16 Score=104.59 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCCceEEEcCCC--CCC---CHHHHHHHhhhcCCeeEEEEecC-------CCCCceEEEEEcCHHHHHHHHHhcCCCCCC
Q 027194 4 RASRTLYVGNLP--GDI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (226)
Q Consensus 4 ~~~~~l~v~nlp--~~~---t~~~l~~~f~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (226)
.|+++|+|.|+- .++ -+++|++.|++||.|..|.|..+ +.++|+|||+|.++++|.+|+..|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 589999999993 222 36889999999999999999653 245699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 027194 72 GHRLRVELAH 81 (226)
Q Consensus 72 g~~i~v~~~~ 81 (226)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999874
No 303
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=102.37 Aligned_cols=79 Identities=6% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCc----ccccc
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDS----EFRNA 174 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~----~~~g~ 174 (226)
..+..+|||+|||+.+++++|+++|..||.|.. |.++.+.. .|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356679999999999999999999999999966 88888763 46999999999 999999999999 99995
Q ss_pred eeeeEEEEeeecCC
Q 027194 175 FSRAYVRVREYDHR 188 (226)
Q Consensus 175 ~~~~~i~~~~~~~~ 188 (226)
.|.+....+.
T Consensus 99 ----~l~V~~a~~~ 108 (131)
T 2m2b_A 99 ----TINVEFAKGS 108 (131)
T ss_dssp ----CCCCEECCCS
T ss_pred ----EEEEEECCCC
Confidence 4555555543
No 304
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=2.5e-15 Score=98.78 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=65.1
Q ss_pred CcceEEecCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccc-ce
Q 027194 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (226)
Q Consensus 107 ~~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g-~~ 175 (226)
.+++|||+|||. .+++++|+++|+.||.|..+.++.++. .|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 999999999999999999999988775 3699999999999999999999999998 75
Q ss_pred eee
Q 027194 176 SRA 178 (226)
Q Consensus 176 ~~~ 178 (226)
+..
T Consensus 85 l~V 87 (100)
T 3ns6_A 85 LFL 87 (100)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
No 305
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=95.46 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=60.6
Q ss_pred ceEEecCCCCCC------CHHHHHHHHHhcCCeeEEEEeeC--CCCCEEEEEeCCHHHHHHHHHHcCCcccccc-ee
Q 027194 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FS 176 (226)
Q Consensus 109 ~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~-~~ 176 (226)
++|||+|||..+ ++++|+++|+.||.|..+.+... ...|||||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 579999999999 67999999999999999988743 2347999999999999999999999999996 54
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=100.34 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
...++|||+|||..+++++|+++|..||.|..+.+.. ..++|||+|.+.++|..|+..|||..+.|+.+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 3567899999999999999999999999999988875 45699999999999999999999999999644
No 307
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=8.3e-15 Score=94.19 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=66.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
..+|||+|||..+++++|+++|+.||.|..+.+..+.. .++|||+|.+.++|.+|+ .|||..+.| ..+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 46899999999999999999999999999999987753 459999999999999999 899999999 566666
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
..++
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 6544
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=6.9e-15 Score=100.56 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCcceEEecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeC-CCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
.+..+|||+|||+.+++++|+ ++|+.||.|..|.+... ...|||||+|.+.++|..|+..|||..+.|+. |
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~----l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP----L 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC----C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE----E
Confidence 457789999999999998866 79999999999887653 45679999999999999999999999999964 4
Q ss_pred EEeeec
Q 027194 181 RVREYD 186 (226)
Q Consensus 181 ~~~~~~ 186 (226)
.+..+.
T Consensus 103 ~V~~a~ 108 (127)
T 2a3j_A 103 VITFSE 108 (127)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 445443
No 309
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=8.4e-15 Score=100.17 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=66.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
...+|||+|||..+++++|+++|..||.|..+.+..++. .|||||+|.+.++|..|+ .|||..+.| ..+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 467999999999999999999999999999999987743 359999999999999999 799999999 46666
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
...+.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 66554
No 310
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=97.50 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=64.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcc----ccccee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE----FRNAFS 176 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~----~~g~~~ 176 (226)
.-.+|||+|||+.+|+++|+++|+.||. +..+.++.++. .|||||+|.+.++|.+|++.|||.. ++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G--- 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG--- 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT---
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC---
Confidence 3457999999999999999999999995 56788887754 4699999999999999999999974 778
Q ss_pred eeEEEEeeec
Q 027194 177 RAYVRVREYD 186 (226)
Q Consensus 177 ~~~i~~~~~~ 186 (226)
+.+.+..++
T Consensus 85 -r~i~V~~Ak 93 (95)
T 2lkz_A 85 -KTIGVDFAK 93 (95)
T ss_dssp -EEEEEEECC
T ss_pred -EEEEEEEcc
Confidence 456666554
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=93.71 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=61.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
...+|||+|||..+++++|+++|..||.|..+ +.+..++ ||||+|.+.++|.+|+. |||..+.|+ .+.+...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~----~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH----RLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE----ECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE----EEEEEEC
Confidence 45689999999999999999999999999987 3333323 99999999999999999 999999995 4555544
Q ss_pred c
Q 027194 186 D 186 (226)
Q Consensus 186 ~ 186 (226)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.7e-15 Score=97.40 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC--ccccccee
Q 027194 104 SRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFS 176 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~--~~~~g~~~ 176 (226)
...+.++|||+|||+. +++++|+++|..||.|..+.+... .++|||+|.+.++|..|++.|++ ..+.|+.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3557889999999998 999999999999999999998754 57999999999999999998864 56899644
No 313
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=103.54 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...+|||+|||+.+++++|+++|..|| .|..+.++.+..+ |||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr----~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE----KV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE----EC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe----Ee
Confidence 457999999999999999999999999 9999999988654 4999999999999999999999999995 55
Q ss_pred EEeeec
Q 027194 181 RVREYD 186 (226)
Q Consensus 181 ~~~~~~ 186 (226)
.+..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 555543
No 314
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=1.4e-14 Score=97.65 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=68.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
+.+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.++|..|+..|||..+.|+ .+.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR----YLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC----BCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEE
Confidence 44677999999999999999999999999999999886543 57999999999999999999999999995 44555
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
...+
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 5543
No 315
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=2.3e-15 Score=98.04 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||.|||..+++++|+++|..||.|..+.++.+..+ ++|||+|.+.++|.+|++.|||..+.|+ .++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr----~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR----KVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc----EEE
Confidence 45689999999999999999999999999987777665443 5999999999999999999999999995 555
Q ss_pred Eeee
Q 027194 182 VREY 185 (226)
Q Consensus 182 ~~~~ 185 (226)
+...
T Consensus 89 v~~a 92 (95)
T 2ek1_A 89 LSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 5443
No 316
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=94.13 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=66.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
...+.++|||.|||..+++++|+++|..|+ .+.++.+... +||||+|.+.++|.+|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999774 4555555433 599999999999999999999999999 56
Q ss_pred EEEeeecCCCCC
Q 027194 180 VRVREYDHRRDG 191 (226)
Q Consensus 180 i~~~~~~~~~~~ 191 (226)
|.+..+.+...+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 677777664444
No 317
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=5e-14 Score=95.51 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=64.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCE-EEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
..|||+||++.+++++|.++|+.||.|..+.++.. .|+ |||+|.+.++|..|++.|||..|.|.. +.+++..+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEecC
Confidence 35679999999999999999999999999998764 375 999999999999999999999998732 3566666655
Q ss_pred C
Q 027194 188 R 188 (226)
Q Consensus 188 ~ 188 (226)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 3
No 318
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=2.3e-14 Score=91.72 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=63.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
..+..+|||+|||..+++++|+++|+.||.|..+.++.++. .|+|||+|.+.++|.+|++ +++..+.|+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34677999999999999999999999999999999988765 3599999999999999997 58888999544
No 319
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=95.39 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
......+|||.|||+.+++++|+++|..||.+ .+.++.++.+ |||||+|.+.++|.+|++ +|+..+.|+.+..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34567899999999999999999999999954 8888887642 499999999999999995 7999999964433
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=101.17 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=67.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
...++|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|.+|+ .|||..+.| ..+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 3567999999999999999999999999999999987654 469999999999999999 899999999 4666
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+....+
T Consensus 98 V~~a~~ 103 (114)
T 2cq4_A 98 VQASQA 103 (114)
T ss_dssp EEEHHH
T ss_pred EEecCC
Confidence 666544
No 321
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=4.9e-15 Score=96.85 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeC-CCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
..+.++|||+|||..+++++|+ ++|..||.|..+.+... ...|+|||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 4567899999999999999999 99999999999988632 234799999999999999999999999999 45
Q ss_pred EEEeeecC
Q 027194 180 VRVREYDH 187 (226)
Q Consensus 180 i~~~~~~~ 187 (226)
+.+....+
T Consensus 81 l~v~~a~~ 88 (97)
T 1nu4_A 81 MRIQYAKT 88 (97)
T ss_dssp CEEEECSS
T ss_pred EEEEEccC
Confidence 66665554
No 322
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=99.65 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 102 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.....+..+|||+|||..+++++|+++|..||.|..+.++.++. .|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455788999999999999999999999999999999987643 4699999999999999999999999999544
No 323
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=98.73 Aligned_cols=71 Identities=15% Similarity=0.332 Sum_probs=60.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.....++|||+|||..+++++|+++|+.|| |..+.+..+. ..|||||+|.+.++|.+|+ .|||..+.|+.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 345678999999999999999999999999 9999998775 2569999999999999999 899999999544
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=97.10 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=64.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
....+|||+|||+.+++++|+++|..| .|..+.++.+.. .|+|||+|.+.++|.+|+ .||+..++|+ +|.+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr----~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR----YVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe----EEEE
Confidence 446799999999999999999999999 889999987654 469999999999999999 5999999994 5666
Q ss_pred eeec
Q 027194 183 REYD 186 (226)
Q Consensus 183 ~~~~ 186 (226)
....
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 325
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=4.9e-15 Score=117.19 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCC---Cc--e
Q 027194 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (226)
Q Consensus 2 ~~~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~--~ 74 (226)
++.|+++|||+| |+..+|+++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 578999999999 578999999999999999999988753 5899999999999999999999998873 45 5
Q ss_pred EEEEEcc
Q 027194 75 LRVELAH 81 (226)
Q Consensus 75 i~v~~~~ 81 (226)
|.+.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 326
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=96.47 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=67.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEE
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~ 182 (226)
+..+|||+|||..+++++|+++|..||.|..+.+..+..+ |||||+|.+.++|.+|++.|||..+.|+ .+.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR----ALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS----CBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc----EEEE
Confidence 4578999999999999999999999999999999887543 5999999999999999999999999996 4455
Q ss_pred eeecC
Q 027194 183 REYDH 187 (226)
Q Consensus 183 ~~~~~ 187 (226)
....+
T Consensus 83 ~~a~~ 87 (104)
T 1p1t_A 83 DNAAS 87 (104)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 55544
No 327
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=1.8e-14 Score=96.23 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=67.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|.+|+..+ +..+.| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 4667899999999999999999999999999999988754 469999999999999999976 588999 5667
Q ss_pred EeeecCCCC
Q 027194 182 VREYDHRRD 190 (226)
Q Consensus 182 ~~~~~~~~~ 190 (226)
+....++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 776665443
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=96.54 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+..+|||+|||..+++++|+++|..||.|..+ .......|||||+|.+.++|.+|+..|||..+.| ..+.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3467899999999999999999999999988777 3333345699999999999999999999999999 5677776
Q ss_pred ecC
Q 027194 185 YDH 187 (226)
Q Consensus 185 ~~~ 187 (226)
..+
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 655
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=91.78 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=59.8
Q ss_pred Ccce-EEecCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 107 SEYR-VLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 107 ~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
+..+ |||.|||+.+++++ |.++|+.|| .|..+ ..|+|||.|.+.++|.+|++.|+|.++.|+ .|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr----~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGN----RI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSS----CC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCc----eE
Confidence 3444 89999999999887 558999995 99888 238999999999999999999999999995 55
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
++..++.
T Consensus 77 ~v~~A~~ 83 (96)
T 2diu_A 77 IVSFTPK 83 (96)
T ss_dssp EEESSCC
T ss_pred EEEecCC
Confidence 5565544
No 330
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-14 Score=95.10 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccce----ee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF----SR 177 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~----~~ 177 (226)
..+.++|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|.+|+..|||..+.+.. ..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34668999999999999999999999999999999998863 259999999999999999999999997544 22
Q ss_pred eEEEEeeecC
Q 027194 178 AYVRVREYDH 187 (226)
Q Consensus 178 ~~i~~~~~~~ 187 (226)
..+.+....+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 4455555543
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-15 Score=97.46 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCcceEEe--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccc
Q 027194 106 RSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 106 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
.+..+||| +||++.+++++|+++|++||.|..+.+..+ .|||||+|.+.++|.+|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46678999 779999999999999999999999887653 57999999999999999999999988
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=2.2e-14 Score=97.67 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=66.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCE-EEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~ 185 (226)
+-..|+|+||++.+++++|.++|+.||.|..+.+.... .++ |||+|.+.++|..|++.|||..+.|.. +.+++..+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~--~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTE--EEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCC--cEEEEEec
Confidence 34467799999999999999999999999999887765 455 999999999999999999999998732 45666666
Q ss_pred cC
Q 027194 186 DH 187 (226)
Q Consensus 186 ~~ 187 (226)
++
T Consensus 104 k~ 105 (130)
T 3zzy_A 104 KL 105 (130)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 333
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.3e-15 Score=100.63 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHh------------hhcCCeeEEEEecC--CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 13 NLPGDIREREVEDLF------------YKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 13 nlp~~~t~~~l~~~f------------~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
|||..+++++|++.| ++||.|..|.+..+ +.++|||||+|.++++|.+|+..|||..+.|++|.|.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~ 101 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Confidence 444455666666555 99999999999654 5779999999999999999999999999999999999
Q ss_pred Ec
Q 027194 79 LA 80 (226)
Q Consensus 79 ~~ 80 (226)
++
T Consensus 102 ~s 103 (104)
T 1jmt_A 102 LS 103 (104)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 334
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=97.75 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
..+..+|||+|||+.+++++|+++|..||.| ..+.++.+. ..|||||+|.+.++|.+|+.. |+..+.|+ +|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr----~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGR----EA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE----EE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCe----EE
Confidence 3467789999999999999999999999999 788888765 346999999999999999997 99999994 55
Q ss_pred EEeeecC
Q 027194 181 RVREYDH 187 (226)
Q Consensus 181 ~~~~~~~ 187 (226)
.+....+
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 6655544
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=97.40 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=67.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.....++|||+|||+.+++++|+++|..||. |..+.++.+..+ |||||+|.+.++|.+|++ ||+..+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--- 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR--- 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE---
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe---
Confidence 3456788999999999999999999999998 888998877653 599999999999999999 999999995
Q ss_pred eEEEEeeec
Q 027194 178 AYVRVREYD 186 (226)
Q Consensus 178 ~~i~~~~~~ 186 (226)
+|.+....
T Consensus 89 -~i~V~~a~ 96 (118)
T 2db1_A 89 -YIEVFKSH 96 (118)
T ss_dssp -EEEEEEEC
T ss_pred -EEEEEECC
Confidence 55555443
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=6.8e-14 Score=101.37 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
...+.++|||.|||..+++++|+++|..||.|..|.+..+. ..++|||+|.+.++|.+|++.|||..+.|+.+...+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999998865 346999999999999999999999999997654433
No 337
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.9e-15 Score=91.64 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=62.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
++|||+|||..+++++|+++|+.||.|..+.+..++. .|+|||+|.+.++|.+|+..++ ..+.|+.+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 3699999999999999999999999999999987754 4699999999999999999999 9999975543
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=2e-14 Score=92.24 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=64.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeec
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~ 186 (226)
..++|||+|||..+++++|+++|..| .|..+.+. ...|+|||+|.+.++|.+|++.|||..+.| ..+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 45679999999999999999999999 99998885 556799999999999999999999999999 456666554
Q ss_pred C
Q 027194 187 H 187 (226)
Q Consensus 187 ~ 187 (226)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 339
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=1.1e-14 Score=90.53 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=60.7
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
+|||+|||..+++++|+++|+.||.|..+.+..++. .|+|||+|.+.++|.+|++ |||..+.|+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 489999999999999999999999999999987753 4699999999999999998 999999996554
No 340
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=96.03 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=61.0
Q ss_pred CcceEEecCCCCCC------CHHHHHHHHHhcCCeeEEEEeeC--CCCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 107 SEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 107 ~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
..++|||+|||..+ ++++|+++|+.||.|..+.+... ...|||||+|.+.++|.+|+..|||..+.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 46789999999999 78999999999999999988732 2347999999999999999999999999995
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=2.4e-14 Score=91.54 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=61.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
.+..+|||+|||..+++++|+++|..| | .|..+.+..+ .+||||+|.+.++|.+|+ .|||..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 356789999999999999999999999 8 8999888765 579999999999999999 9999999996
Q ss_pred ee
Q 027194 175 FS 176 (226)
Q Consensus 175 ~~ 176 (226)
.+
T Consensus 81 ~l 82 (87)
T 2hzc_A 81 SL 82 (87)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 342
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=1.2e-14 Score=100.46 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
++....++|||+|||+.+++++|+++|..||. |..+.++.+..+ |||||+|.+.++|.+|++ ||+..+.|+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 34456789999999999999999999999999 788999887653 599999999999999999 999999995
Q ss_pred eeEEEEeee
Q 027194 177 RAYVRVREY 185 (226)
Q Consensus 177 ~~~i~~~~~ 185 (226)
+|.+...
T Consensus 116 --~i~V~~a 122 (136)
T 2hgl_A 116 --YIEVFKS 122 (136)
T ss_dssp --EEEEEEC
T ss_pred --EEEEEEC
Confidence 5555544
No 343
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7e-14 Score=93.32 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=66.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCC----CCCEEEEEeCCHHHHHHHHHHcC--Ccccccceee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDG----SGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSR 177 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~----~~~~a~v~f~~~~~A~~a~~~l~--~~~~~g~~~~ 177 (226)
.+.++|||+|||..+++++|+++|..||. |..+.++ .+. ..|||||+|.+.++|..|+..|| +..+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~--- 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH--- 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB---
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC---
Confidence 35678999999999999999999999998 9999887 443 34699999999999999999996 5899995
Q ss_pred eEEEEeeecC
Q 027194 178 AYVRVREYDH 187 (226)
Q Consensus 178 ~~i~~~~~~~ 187 (226)
.+.+..+.+
T Consensus 83 -~l~V~~a~~ 91 (109)
T 2dis_A 83 -QIAVDWAEP 91 (109)
T ss_dssp -CCEEEESCS
T ss_pred -eEEEEEcCC
Confidence 556666554
No 344
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=98.40 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-GS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+....++|||+|||+.+++++|+++|..||.|..+.++.+ .. .|||||+|.+.++|.+|+. |||..+.|+.+..
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 4456789999999999999999999999999877444333 22 3599999999999999999 9999999965443
No 345
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=3.7e-14 Score=94.91 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 4 RASRTLYVGNLPGDI----------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
.|+++|.|.|+-... -+++|++.|++||.|..|.+..+. ++|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478899999983221 145789999999999999996553 589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 027194 74 RLRVELAH 81 (226)
Q Consensus 74 ~i~v~~~~ 81 (226)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 346
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.1e-14 Score=110.66 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhcCC-CCCC---CceEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~---g~~i~v 77 (226)
.++++|||+|||+.+|+++|+++|..||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567799999999999999999999954 4444 999999
Q ss_pred EEccCC
Q 027194 78 ELAHGG 83 (226)
Q Consensus 78 ~~~~~~ 83 (226)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=96.10 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
....++|||+|||+.+++++|+++|..||. |..+.++.+.. .|+|||+|.+.++|.+|+. +|+..++|+.+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456778999999999999999999999887 88898887654 4699999999999999999 999999996443
No 348
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=7.8e-15 Score=94.53 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=62.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
++|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.+ |..|+..|||..+.|+.+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 3699999999999999999999999999999987654 469999999999 999999999999999755443
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=5.1e-14 Score=95.67 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~ 184 (226)
..+.++|||+|+ .+++++|+++|+.||.|..+.+. ...|||||+|.+.++|..|+..|||..+.|+ .+.+..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~----~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV----QLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC----BCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEE
Confidence 356789999996 69999999999999999999886 4567999999999999999999999999995 555565
Q ss_pred ecCC
Q 027194 185 YDHR 188 (226)
Q Consensus 185 ~~~~ 188 (226)
..+.
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 5543
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=5.3e-14 Score=98.57 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeE--------EEEe-eCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.+.++|||+|||..+++++|+++|..||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 46678999999999999999999999998765 3332 34556799999999999999999999999999
Q ss_pred eeEEEEeeecCC
Q 027194 177 RAYVRVREYDHR 188 (226)
Q Consensus 177 ~~~i~~~~~~~~ 188 (226)
..+.+..+.+.
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 46666666543
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=7.4e-14 Score=89.65 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=59.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEe
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~ 183 (226)
...+.++|||+|||+.+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|.+ |++..+.+.. ..+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g--~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKG--ISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETT--EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCC--EEEEEE
Confidence 3456789999999999999999999999999999999876 56899999999999983 5666554211 455666
Q ss_pred eecC
Q 027194 184 EYDH 187 (226)
Q Consensus 184 ~~~~ 187 (226)
.+.+
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 5544
No 352
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=5.2e-14 Score=106.14 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----CEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
..++|||+||++.+++++|+++|..|| .|..|.|+.+..+ |||||+|.+.++|.+|++.||+..|.|+.+.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 456899999999999999999999999 9999999988654 49999999999999999999999999965543
No 353
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=6.9e-14 Score=92.04 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=63.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEe----eCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEE
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~----~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~ 181 (226)
.+..+|||+|||..+++++|+++|..||.|.. .++ .....|||||+|.+.++|.+|++ |||..+.|+ .+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----EIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB----CCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc----EEE
Confidence 35679999999999999999999999997765 222 23456799999999999999999 999999995 556
Q ss_pred EeeecC
Q 027194 182 VREYDH 187 (226)
Q Consensus 182 ~~~~~~ 187 (226)
+....+
T Consensus 89 V~~a~~ 94 (101)
T 1fj7_A 89 LEKPKG 94 (101)
T ss_dssp EECCSC
T ss_pred EEEcCC
Confidence 666554
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=5.1e-14 Score=95.87 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
.......+|||+|||+.+++++|+++|+.| .|. .|.++.++. .|||||+|.+.++|.+|++ +++..++|+.+.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 344567889999999999999999999999 666 788877654 4699999999999999999 578999996544
Q ss_pred e
Q 027194 178 A 178 (226)
Q Consensus 178 ~ 178 (226)
.
T Consensus 115 V 115 (126)
T 2hgm_A 115 V 115 (126)
T ss_dssp C
T ss_pred E
Confidence 3
No 355
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=2.5e-14 Score=88.87 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=60.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
+|||+|||..+++++|+++|+.||.|..+.+..++. .|+|||+|.+.++|.+|+. +++..+.|+.+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEE
Confidence 489999999999999999999999999999887644 4699999999999999999 5899999976543
No 356
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=1.1e-14 Score=100.97 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=60.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
.....+|||.|||+.+++++|+++|..|| |..+.++.++. .|||||+|.+.++|.+|+ .+|+..+.|+.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 34567899999999999999999999999 66888887754 469999999999999999 799999999644
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=90.97 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=61.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccc--ccceeeeEEEEee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~--~g~~~~~~i~~~~ 184 (226)
+.++|||+|||..+++++|+++|..||.|..+.++.+ ..|||||+|.+.++|.+ +++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC----EEEEEEe
Confidence 4678999999999999999999999999999998866 56799999999999975 455444 45 5667776
Q ss_pred ecCCCCC
Q 027194 185 YDHRRDG 191 (226)
Q Consensus 185 ~~~~~~~ 191 (226)
..++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 6654443
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-15 Score=101.89 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=68.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCC----CCEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
.+..+|||+|||..+++++|+++|..||.|.. +.++.++. .+||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999988 77777643 4699999999999999999999999999
Q ss_pred ceeeeEEEEeeecCCCC
Q 027194 174 AFSRAYVRVREYDHRRD 190 (226)
Q Consensus 174 ~~~~~~i~~~~~~~~~~ 190 (226)
+ .+.+..+.+...
T Consensus 85 ~----~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 N----PIKVSFATRRAD 97 (116)
Confidence 5 556666555433
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.4e-14 Score=94.82 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
....+|||+|||+.+++++|+++|..||.| ..+.++.+.. .|||||+|.+.++|.+|++. |+..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR---- 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR---- 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe----
Confidence 456799999999999999999999999975 5788877653 25999999999999999996 99999995
Q ss_pred EEEEeee
Q 027194 179 YVRVREY 185 (226)
Q Consensus 179 ~i~~~~~ 185 (226)
+|.+...
T Consensus 96 ~i~V~~a 102 (123)
T 2dha_A 96 YIELFRS 102 (123)
T ss_dssp EECCEEE
T ss_pred EEEEEEC
Confidence 5555544
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.1e-13 Score=88.81 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=65.4
Q ss_pred CCCCcceEEecCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 104 SRRSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
.+.+..+|+|.||..... +++|+++|..||.|..+.|......|+|||+|.+.++|.+|+..|||..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345678999999944332 579999999999999997754455789999999999999999999999999
Q ss_pred cceeeeEEEEeeecC
Q 027194 173 NAFSRAYVRVREYDH 187 (226)
Q Consensus 173 g~~~~~~i~~~~~~~ 187 (226)
|+ .|.+....+
T Consensus 91 gr----~l~v~~a~~ 101 (112)
T 2dit_A 91 GR----QITAQAWDG 101 (112)
T ss_dssp TE----ECEEEECCS
T ss_pred Cc----EEEEEEeCC
Confidence 94 566666555
No 361
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=4.5e-13 Score=88.50 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=61.8
Q ss_pred CCCcceEEecCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCC-----CCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 105 RRSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 105 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
..++.+|+|.|+.. .-++++|+++|+.||.|..+.|+.++ ..|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35677899999963 22689999999999999999998764 347999999999999999999999999996
Q ss_pred eee
Q 027194 175 FSR 177 (226)
Q Consensus 175 ~~~ 177 (226)
.+.
T Consensus 85 ~i~ 87 (105)
T 2pe8_A 85 VVK 87 (105)
T ss_dssp ECE
T ss_pred EEE
Confidence 443
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=88.35 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-------CCCEEEEEeCCHHHHHHHHHHc---CCcc
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKL---DDSE 170 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~a~v~f~~~~~A~~a~~~l---~~~~ 170 (226)
...++|||+|||..+++++|+++|..||.|. +.++.+. ..|||||+|.+.++|.+|++.| +|..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 3567899999999999999999999999999 7666543 3579999999999999999988 5553
No 363
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=2.7e-13 Score=89.34 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=62.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
...++|||+|||..+++++|+++|..||.|..+.+..+..+ |||||+|.+.++|.+|+. ++..+.|+.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 35678999999999999999999999999999999987632 599999999999999999 88888885443
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=5.1e-13 Score=89.58 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=63.9
Q ss_pred ceEEecCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----EEEEEeCC----HHH----HHHHHH--HcCCcc
Q 027194 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN----YDD----MKHAIK--KLDDSE 170 (226)
Q Consensus 109 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~----~~~----A~~a~~--~l~~~~ 170 (226)
+.|+|+|| |+.++++.|+++|+.||.|..+.++.|+.+| ||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999885 99999996 433 889988 789999
Q ss_pred cccceeeeEEEEeeecC
Q 027194 171 FRNAFSRAYVRVREYDH 187 (226)
Q Consensus 171 ~~g~~~~~~i~~~~~~~ 187 (226)
+.| +.|++..++.
T Consensus 83 I~G----r~irV~ln~~ 95 (136)
T 2j8a_A 83 IMG----FKFEVILNKH 95 (136)
T ss_dssp ETT----EEEEEEECCT
T ss_pred ecC----cEEEEEECcc
Confidence 999 5666665543
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.9e-12 Score=85.48 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=60.2
Q ss_pred CcceEEecCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCC------CCCEEEEEeCCHHHHHHHHHHcCCcc
Q 027194 107 SEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (226)
Q Consensus 107 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~------~~~~a~v~f~~~~~A~~a~~~l~~~~ 170 (226)
++.+|.|.|+ |..+. +++|++.|++||.|..+.|+.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5668889997 33332 36899999999999999998764 34799999999999999999999999
Q ss_pred cccceeee
Q 027194 171 FRNAFSRA 178 (226)
Q Consensus 171 ~~g~~~~~ 178 (226)
+.|+.+.+
T Consensus 84 f~GR~i~v 91 (105)
T 3v4m_A 84 FANRVVVT 91 (105)
T ss_dssp ETTEECEE
T ss_pred eCCCEEEE
Confidence 99965543
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=1.1e-11 Score=91.04 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=78.2
Q ss_pred CHHHHHHHHHhc--CCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHh
Q 027194 54 EARDAEDAIRGR--DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR 131 (226)
Q Consensus 54 ~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 131 (226)
+.+.+..|+... ....+.+....|......+. + .. . ..........+|||+|||..+++++|+++|+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~-p--~~----~---~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 132 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPL-P--EV----T---DEYKNDVKNRSVYIKGFPTDATLDDIKEWLED 132 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCC-C--CC----C---HHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCC-c--cc----c---hhhhhccccCEEEecCCCCcCCHHHHHHHHhc
Confidence 667778888766 44444544445543311000 0 00 0 00001124578999999999999999999999
Q ss_pred cCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 132 AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 132 ~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
||.|..+.+..+.. .|+|||+|.+.++|.+|+..++ ..+.|+.+.
T Consensus 133 ~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~ 180 (193)
T 2voo_A 133 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLL 180 (193)
T ss_dssp SCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECE
T ss_pred CCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEE
Confidence 99999999987654 3699999999999999998654 589996543
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=2e-12 Score=97.27 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCcceEEecCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccc
Q 027194 106 RSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (226)
Q Consensus 106 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~ 171 (226)
....+|||+||+..+ ++++|+++|+.||.|..|.|+.. .|+|||+|.+.++|..|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 467799999999998 79999999999999999999865 46999999999999999999999999
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.4e-12 Score=84.50 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcC-HHHHHHHHHhcC--CCCCCCceEEEEE
Q 027194 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (226)
Q Consensus 4 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (226)
.+.+.|||+||++. ++.++|+++|+.||.|..|.+..+. ..|||+|.+ +++|..|+..+| +..|.|..+.+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 57899999999999 9999999999999999999997653 479999999 899999999995 6888898888876
Q ss_pred c
Q 027194 80 A 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=5.5e-12 Score=84.29 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=61.3
Q ss_pred CCCcceEEecCCCCCC----------CHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 105 RRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
+.++.+|.+.|+=... -+++|++.|++||.|..+.+..+...|+|||+|.+.++|.+|+..|||.+++|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3466788888873222 136889999999999999998877778999999999999999999999999996
Q ss_pred eeee
Q 027194 175 FSRA 178 (226)
Q Consensus 175 ~~~~ 178 (226)
.+.+
T Consensus 84 ~i~v 87 (114)
T 3s6e_A 84 MITA 87 (114)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 5543
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=4.3e-12 Score=85.39 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=60.7
Q ss_pred CcceEEecCCCC--CC---CHHHHHHHHHhcCCeeEEEEeeCCCC--------CEEEEEeCCHHHHHHHHHHcCCccccc
Q 027194 107 SEYRVLVTGLPS--SA---SWQDLKDHMRRAGDVCFSQVFRDGSG--------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (226)
Q Consensus 107 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~a~v~f~~~~~A~~a~~~l~~~~~~g 173 (226)
++.+|+|.|+-. .+ -+++|++.|++||.|..+.|+.+..+ |++||+|.+.++|.+|+..|||.++.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 22 25889999999999999999877532 699999999999999999999999999
Q ss_pred ceeeeE
Q 027194 174 AFSRAY 179 (226)
Q Consensus 174 ~~~~~~ 179 (226)
+.+.+.
T Consensus 99 R~i~v~ 104 (118)
T 3ue2_A 99 RKVVAE 104 (118)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 665443
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=8.6e-12 Score=78.38 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 3 SRASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 3 ~~~~~~l~v~nlp----~~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
+.|.-||+|.-.| ..+-+ .+|.+.|..||.|..+++.. +.+||+|.+.++|.+|++ |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 5678889887766 23444 67899999999999999984 449999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 027194 75 LRVELAHGG 83 (226)
Q Consensus 75 i~v~~~~~~ 83 (226)
|+|.++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998654
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=6.2e-12 Score=99.54 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=59.2
Q ss_pred CCCcceEEecC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccc
Q 027194 105 RRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (226)
Q Consensus 105 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~ 172 (226)
..++.+|||+| |++.+++++|+++|++||.|..+.+.. ..|||||+|.+.++|.+|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45778999999 578999999999999999999887654 5579999999999999999999999984
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4.3e-11 Score=80.10 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=65.1
Q ss_pred CCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCC-HHHHHHHHHHcC--Ccccccceeee
Q 027194 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNAFSRA 178 (226)
Q Consensus 103 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~-~~~A~~a~~~l~--~~~~~g~~~~~ 178 (226)
..-.+++.|+|.||+.. ++.++|+++|+.||.|.+|.+..+.. .|||+|.+ ..+|..|+..|+ +..+.|..+..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 45568899999999999 99999999999999999999988876 79999999 899999999994 77888854443
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=4.4e-12 Score=83.63 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=53.4
Q ss_pred ecCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCC---CCEEEEEeCCHHHHHHHHHHcCCcccccceee
Q 027194 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~ 177 (226)
+.||+..+++++|++.| ++||.|..+.+..+.. .|+|||+|.+.++|.+|+..|||..+.|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34566666776666555 9999999999987753 47999999999999999999999999996554
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-10 Score=74.72 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEEEEeeecC
Q 027194 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (226)
Q Consensus 118 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 187 (226)
..+++++|+++|.+||.|..+.++ ....|||||+|.+.++|..|++.+++ +.|+ .+.+....+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~----~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDN----PLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSS----BCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCC----eEEEEEccC
Confidence 468999999999999999999987 35568999999999999999998655 4564 455555544
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.2e-10 Score=73.53 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 3 SRASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 3 ~~~~~~l~v~nlp~~-----~t~----~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
+.|.-||+|.-++.. +-+ .+|.+.|..||.|..+++..+ -+||+|.+.++|.+|++ |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 578889999877743 333 568899999999999999844 39999999999999999 999999999
Q ss_pred eEEEEEc
Q 027194 74 RLRVELA 80 (226)
Q Consensus 74 ~i~v~~~ 80 (226)
.|+|.+.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999874
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=7.9e-10 Score=82.92 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=62.7
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHhhhcCCeeEEEEec-------CCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc
Q 027194 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (226)
Q Consensus 6 ~~~l~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (226)
+..+.+.|+-. .-.+++|.+.|..||.|..+.+.. ++.++|++||+|.+.++|.+|+..|||..+.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555522 234678999999999999999953 237789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 027194 74 RLRVELAH 81 (226)
Q Consensus 74 ~i~v~~~~ 81 (226)
+|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=67.70 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=54.3
Q ss_pred CcceEEecCCC----CCCCH----HHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeee
Q 027194 107 SEYRVLVTGLP----SSASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (226)
Q Consensus 107 ~~~~l~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~ 178 (226)
++.+|+|.-.+ ..+-. .+|.+.|..||.|..+++..+. +||+|.+.++|.+|+. |||..+.|+.++.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 55567766655 23333 6789999999999999998874 9999999999999999 9999999954443
Q ss_pred E
Q 027194 179 Y 179 (226)
Q Consensus 179 ~ 179 (226)
.
T Consensus 81 ~ 81 (91)
T 2dnr_A 81 A 81 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.6e-08 Score=65.09 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=66.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc-----CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
..++|-|-|||-.+++..|+.++.++ |.+..|.+..+ -+=|+|+|.|...|-+|.-.|+|..|.|++|.+.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 37899999999999999999999999 99999999866 5789999999999999988899999999999995
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4e-09 Score=66.59 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCcceEEecCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 106 RSEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 106 ~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
+++.+|+|.-++.. +.. .+|.+.|..||.|..+++..+. +||+|.+.++|.+|+. |||..+.|+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 46667888777632 322 5688999999999999998884 9999999999999999 99999999544
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.8e-07 Score=56.84 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhh---c--CCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEE
Q 027194 4 RASRTLYVGNLPGDIREREVEDLFYK---Y--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (226)
Q Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~f~~---~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (226)
....+|.|.|||+.++++.|.-+|+. - |.|..+... .+-|+|+|.+.+.|++.|+ -..+.|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 35689999999999999999999997 2 589999887 3889999999999999998 45788889999997
Q ss_pred Ec
Q 027194 79 LA 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 80 P~ 81 (104)
T 2dhx_A 80 PA 81 (104)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=8e-08 Score=71.90 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCC--------CEEEEEeCCHHHHHHHHHHcCCcccccceeeeE
Q 027194 121 SWQDLKDHMRRAGDVCFSQVFRDGSG--------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (226)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~ 179 (226)
.+++|.+.|..||.|..+.|..+... |++||+|.+.++|.+|+..|||..++|+.+.+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~ 208 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 208 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEE
Confidence 46789999999999999999755432 699999999999999999999999999766543
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=9.5e-07 Score=56.92 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=60.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
...+|-+-|||..+++..|+.+...+ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|.|+.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 34568888999999999999999999 9999888877764 69999999999999999999999999543
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.6e-06 Score=55.64 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 5 ASRTLYVGNLPGDI-R----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 5 ~~~~l~v~nlp~~~-t----~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
-.++|+|+||+..+ . .+.++.+|..|+++....+. ++-.-..|.|.++++|.+|-..|++..+.|..++|.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 35789999998864 3 25678999999999998887 4456889999999999999999999999999999999
Q ss_pred ccCC
Q 027194 80 AHGG 83 (226)
Q Consensus 80 ~~~~ 83 (226)
++..
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9743
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.10 E-value=1.2e-05 Score=50.69 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-----CCCCceEEEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
+.|-|++||+.+|++++.+.++....+.-..+... ...-.-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 47889999999999999999999987766666432 2234689999999999999999999987743
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.01 E-value=2.3e-05 Score=49.46 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=47.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (226)
.++++| ++|+.+-..||.++|+.||.|.--.+. -..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 567778 999999999999999999966655555 4799999999999999999763
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=2.9e-05 Score=49.82 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=56.5
Q ss_pred cceEEecCCCCCC-C----HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccceeeeEE
Q 027194 108 EYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (226)
Q Consensus 108 ~~~l~v~nl~~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~~~~i 180 (226)
.++|+|.||+..+ . .+.++++|..|+.......++.= .-..|.|.++++|.+|...||+..+.|+.+++|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3479999998766 2 25778999999987776655542 2678999999999999999999999997665554
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.86 E-value=2.1e-05 Score=49.77 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=45.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (226)
.+++| ++|+.+-..||.++|++||.|.--.+. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 56777 999999999999999999954444444 4799999999999999999764
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=0.00012 Score=48.30 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=58.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCC-ceEEEEEc
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~~ 80 (226)
.+-|.|-+.|+.. .+.|...|..||.|...... ....+..|.|.+..+|++||. .||..+.| ..|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678899999985 67788899999999988772 346899999999999999999 79999974 66777664
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.80 E-value=0.00018 Score=45.45 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcC
Q 027194 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (226)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~ 167 (226)
.+.....++| ++|..+...+|.++|+.||.| .|.++.+- .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3345566777 999999999999999999953 45555553 89999999999999999764
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=0.00028 Score=44.46 Aligned_cols=67 Identities=15% Similarity=0.361 Sum_probs=56.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC------CEEEEEeCCHHHHHHHHHHcCCcccccce
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~a~v~f~~~~~A~~a~~~l~~~~~~g~~ 175 (226)
++|.|.+||+.+|++++.+.+.....+....+..+... .-|+|.|.+.+++..-.+.++|..+.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 36889999999999999999999988877777665532 26999999999999999999999987543
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00028 Score=46.53 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
......|.|.+.|... ...+...|..||.|..... ..+..+-.|.|.+..+|++||. .||..+.|..+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~m 88 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIM 88 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEE
Confidence 3456788899998775 5678899999999998776 2334599999999999999999 69999986443
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.0007 Score=43.25 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=50.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHh---c--CCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCcccccc
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~~~~g~ 174 (226)
...+|.|.|||..+.++.|.-+|+. . |.|..+.... ..|+|+|.+.+.|++.+++ ....+.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4567999999999999999999986 2 3677776654 4899999999999999983 35566663
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.49 E-value=0.0001 Score=46.79 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=54.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecC-----CCCCceEEEEEcCHHHHHHHHHhcCCCCCCCc-----eE
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RL 75 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-----~i 75 (226)
+-.|.|+.|||.+|++++.+.+...-.+.-..+... ...-.-|||.|.+.+++....+.++|..|-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457889999999999998888876655432222221 12235899999999999999999999777432 34
Q ss_pred EEEEc
Q 027194 76 RVELA 80 (226)
Q Consensus 76 ~v~~~ 80 (226)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45555
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00025 Score=44.91 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=45.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcC
Q 027194 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (226)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~ 167 (226)
..++| ++|..+...+|.++|+.||. ..|.++.+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 456666653 89999999999999999765
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.11 E-value=0.00027 Score=57.99 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=42.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
.++|+|. .|..+++.+|.++|+.||+|..+.+.++. .-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789996 79999999999999999999999997643 3699999999999998776
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.01 E-value=0.0017 Score=43.40 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEEec--------------CC--CCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--------------PP--RPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~--------------~~--~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
...-|.|-+.|+.. ...+-+.|+.||.|.+ +.+.. -+ ...++..|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 45567788997764 5577789999998865 22111 01 135789999999999999999 899
Q ss_pred CCCCCceEEEEEc
Q 027194 68 YDFDGHRLRVELA 80 (226)
Q Consensus 68 ~~~~g~~i~v~~~ 80 (226)
..|.|.-|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987777654
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.0017 Score=41.12 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=52.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC------CEEEEEeCCHHHHHHHHHHcCCccccccee
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~a~v~f~~~~~A~~a~~~l~~~~~~g~~~ 176 (226)
..+|.|..||+.+|++++.+.+...-.+.+.....+... .-|+|.|.+.++...-.+.++|..+-+...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 446999999999999999888877655544333332221 158999999999999999999999976443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.80 E-value=0.0013 Score=44.08 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=49.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEE-EEee--------------CC---CCCEEEEEeCCHHHHHHHHHHcCCc
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFR--------------DG---SGTTGIVDYTNYDDMKHAIKKLDDS 169 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~--------------~~---~~~~a~v~f~~~~~A~~a~~~l~~~ 169 (226)
...|.|.+.|..... .+.+.|++||.|... .... .+ ...+..|+|.++.+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 446788899766554 567889999987652 1110 01 23488999999999999999 7999
Q ss_pred ccccceeee
Q 027194 170 EFRNAFSRA 178 (226)
Q Consensus 170 ~~~g~~~~~ 178 (226)
.+.|..+.+
T Consensus 85 ii~G~mIGV 93 (132)
T 3p3d_A 85 VFNGVLLGV 93 (132)
T ss_dssp EETTEECEE
T ss_pred EeCcEEEEE
Confidence 999964433
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.34 E-value=0.011 Score=48.68 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=41.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHH
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~ 164 (226)
....|+|. .|...++.+|.+.|++||.|..+.+..+. +-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 45578887 68899999999999999999998777543 3599999999998887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.52 E-value=0.096 Score=43.77 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=45.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
+.+++|+ +|+.+...+|.++|+.||.|.-..+- ...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHHh
Confidence 3577775 99999999999999999965443333 57899999999999999998753
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.28 E-value=0.84 Score=28.05 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEE
Q 027194 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (226)
Q Consensus 2 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (226)
|-+.+|-|.|-|||.-+-..++.-.....|---.|.+. -|.|+|.|.+.+.-..|++.|-+.. +..+.++.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnhn--nnklqiei 78 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNHN--NNKLQIEI 78 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEETT--TTEEEEEE
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhcC--CCEEEEEE
Confidence 34678999999999999999988778788877777776 6899999999999999988753322 34555554
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.96 E-value=0.73 Score=38.46 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCCc
Q 027194 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (226)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~~ 169 (226)
...++|+ +|..+...+|.++|+.||.+ .+.++.+ ..|+|.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHhC
Confidence 4466665 88899999999999999953 4555444 38999999999999999987543
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.57 E-value=2.1 Score=25.34 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhhcC-----CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCceEEEEEcc
Q 027194 8 TLYVGNL-PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (226)
Q Consensus 8 ~l~v~nl-p~~~t~~~l~~~f~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (226)
+++|..- ...+.+.+|..++..-+ .|-.|.+. ..|.||+..... |..++..|++..+.|+.+.++.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 4666422 34478888888887655 44556665 579999887654 677888899999999999988753
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.59 E-value=7 Score=23.96 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=46.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC
Q 027194 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
..+-+.|-|+|..+-..++.-.....|.--+|....+ .|.+.|.+.++..-|+.+|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHHHh
Confidence 3456778899999988888888888888777877654 699999999999999987543
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.17 E-value=6.5 Score=27.53 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=38.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--hhcCCeeEEEEecCCCCCceEEEEEcCH-HHHHHHHH
Q 027194 8 TLYVGNLPGD---------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEA-RDAEDAIR 63 (226)
Q Consensus 8 ~l~v~nlp~~---------~t~~~l~~~f--~~~G~v~~~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 63 (226)
.+.|-|+|.. .+..+|.+.| ..|.++.-..+.-.....|+|.|+|... .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4567798872 4567899977 8998887666654444578999999754 34444544
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=54.97 E-value=1.9 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHHHhhhcCCeeEEEEecCCCCCceEEEEEc
Q 027194 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (226)
Q Consensus 21 ~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (226)
+++.++|...|.|+-.... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4556677777777755444 899999976
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.70 E-value=6.8 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=14.2
Q ss_pred CCeeEEEEecCCCCCceEEEEEcCHH
Q 027194 31 GPIAHIDLKIPPRPPGYAFVEFEEAR 56 (226)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (226)
|.|..|.. .++.|+|.|+|..
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~s 48 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTTE
T ss_pred eEEEEEec-----CCcEEEEEEccCC
Confidence 55555543 3789999998854
No 409
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=51.25 E-value=13 Score=23.78 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=27.3
Q ss_pred CeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCC
Q 027194 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (226)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (226)
.|.++-.. ...+||.|||=.+..++..|+..+.+..
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 35555443 3459999999999999999999776654
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=50.40 E-value=41 Score=20.59 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=24.8
Q ss_pred eeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCC
Q 027194 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (226)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (226)
|..+.+. ...+||.||++...++...++....|
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 4444443 24699999999999999888886665
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.61 E-value=47 Score=20.19 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=38.0
Q ss_pred EEcCCCCCCCHHHHHHHhhhc-C-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
|+-.+++.++..+|++.++.+ | .|..|+-...+...-=|||.+....+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 444678899999999888864 4 56666655444445579999988877766544
No 412
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.72 E-value=11 Score=22.26 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.9
Q ss_pred CceEEEEEcCHH
Q 027194 45 PGYAFVEFEEAR 56 (226)
Q Consensus 45 ~g~afV~f~~~~ 56 (226)
++.|+|.|.|..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 789999998753
No 413
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=41.55 E-value=14 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=10.0
Q ss_pred CCceEEEEEcCH
Q 027194 44 PPGYAFVEFEEA 55 (226)
Q Consensus 44 ~~g~afV~f~~~ 55 (226)
.+|.|+|.|+|.
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 379999999874
No 414
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=40.52 E-value=60 Score=19.66 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=36.8
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (226)
|+-.+++.++..+|++.++. || .|..|+-.......--|||.+....+|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 34467889999999988875 45 6666666544433457999998777655443
No 415
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.01 E-value=5.7 Score=22.44 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.7
Q ss_pred CCCceEEEEEcCHH
Q 027194 43 RPPGYAFVEFEEAR 56 (226)
Q Consensus 43 ~~~g~afV~f~~~~ 56 (226)
..++.|+|.|+|..
T Consensus 33 ~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 33 SSKQSCLVTFEDNS 46 (63)
T ss_dssp STTSEEEEEETTSC
T ss_pred cCCCEEEEEEccCc
Confidence 34789999998754
No 416
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=36.13 E-value=17 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=24.3
Q ss_pred CCCceEEEEEcCHHHHHHHHHhcCCCCC
Q 027194 43 RPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (226)
Q Consensus 43 ~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (226)
.-+||.|||=.+..++..|++.+.+.+.
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 4699999999999999999998887543
No 417
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=34.56 E-value=21 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.7
Q ss_pred CceEEEEEcCHH
Q 027194 45 PGYAFVEFEEAR 56 (226)
Q Consensus 45 ~g~afV~f~~~~ 56 (226)
++.|+|.|.|..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 679999998754
No 418
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=32.84 E-value=84 Score=22.15 Aligned_cols=44 Identities=9% Similarity=-0.055 Sum_probs=29.5
Q ss_pred EcCCCCCCCHHHH--------HHHhhhcCCeeEEEEecCCCCCceEEEEEcC
Q 027194 11 VGNLPGDIREREV--------EDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (226)
Q Consensus 11 v~nlp~~~t~~~l--------~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (226)
+-.||..++.++- +++|..+|-+.++-|..++.....|-|.|.+
T Consensus 75 ~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~ 126 (185)
T 2ns6_A 75 EFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISE 126 (185)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECC
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEee
Confidence 4489999998773 3445566888888887544445577776544
No 419
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=32.15 E-value=1.1e+02 Score=20.76 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=36.4
Q ss_pred EEcCCCCCCCHHHHHHHhhhc-C-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
|+--++..++..+|.+.++.+ | .|..|+........-=|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 334577889999999888753 4 66666664443335579999987776665433
No 420
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.99 E-value=1.2e+02 Score=20.73 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.8
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
|+--++..++..+|.+.++. || .|..|+-.......--|||.+....+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 34457888999999988875 45 66666654433334569999988776555444
No 421
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.44 E-value=1.2e+02 Score=20.43 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=36.0
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEEecCCCCCceEEEEEcCHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (226)
|+--++..++..+|.+.++. || .|..|+........-=|||.+....+|....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 34457788999999888875 34 6666666444333456999998777666543
No 422
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=29.74 E-value=1e+02 Score=21.02 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=36.7
Q ss_pred EEcCCCCCCCHHHHHHHhhhc-C-CeeEEEEecCCCCCceEEEEEcCHHHHHHHHH
Q 027194 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (226)
Q Consensus 10 ~v~nlp~~~t~~~l~~~f~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (226)
|+--++..++..+|.+.++.+ | .|..|+........-=|||.+....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344567888999998877753 4 66666665444445579999988877665443
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=27.94 E-value=1.4e+02 Score=20.06 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=37.4
Q ss_pred EecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHH
Q 027194 112 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 112 ~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~ 165 (226)
++..++...+.-+|++.++. |+ .|..+..+..+.+. -|+|.+..-.+|......
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 33345668888888888875 66 67777776665443 699999877777665543
No 424
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.81 E-value=85 Score=19.96 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhh-hcCC---eeEEEEecC----CCCCceEEEEEcCHHHHHHH
Q 027194 16 GDIREREVEDLFY-KYGP---IAHIDLKIP----PRPPGYAFVEFEEARDAEDA 61 (226)
Q Consensus 16 ~~~t~~~l~~~f~-~~G~---v~~~~~~~~----~~~~g~afV~f~~~~~a~~a 61 (226)
+..+..+|++.+. .|+. +.-|.=..+ +.+.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567778775555 3442 222221222 456678876 7888887654
No 425
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.64 E-value=52 Score=28.37 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHhh----hcCCeeEEEEec--CCCCCceEEEEEcCHHHHHHHHHhc
Q 027194 13 NLPGDIREREVEDLFY----KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGR 65 (226)
Q Consensus 13 nlp~~~t~~~l~~~f~----~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l 65 (226)
..+...+--||..+|- .+|.|..+.+.. -+....++++.|.+.++|..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 4455555567888884 678898888843 3444678899999999999988765
No 426
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.88 E-value=1.5e+02 Score=20.10 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=36.8
Q ss_pred ecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCC-EEEEEeCCHHHHHHHHHH
Q 027194 113 VTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (226)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~A~~a~~~ 165 (226)
+..++...+.-+|++.++. |+ .|..+..+..+.+. -|+|.+..-.+|......
T Consensus 91 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 91 VFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 3335667888888888875 66 67777776665533 699999877777665543
No 427
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.58 E-value=56 Score=22.04 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=25.8
Q ss_pred eeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCC
Q 027194 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (226)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (226)
|..+.+.. ..+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 45554432 36899999999999999999877763
No 428
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.55 E-value=60 Score=20.41 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhhh-cC---CeeEEEEec----CCCCCceEEEEEcCHHHHHHHH
Q 027194 16 GDIREREVEDLFYK-YG---PIAHIDLKI----PPRPPGYAFVEFEEARDAEDAI 62 (226)
Q Consensus 16 ~~~t~~~l~~~f~~-~G---~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~ 62 (226)
+..+..+|++.+.. |+ .+.-|.=.. .+.+.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56777888766653 33 222222122 2455677766 67777666543
No 429
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.79 E-value=66 Score=24.16 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=24.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 38 (226)
...+.|+|||+.++..-|..++.. +.+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999987 55554443
No 430
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.61 E-value=16 Score=23.34 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=36.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC-C-ceE--EEEEcCHHHHHHHHHhcCCCCCCC
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP-P-GYA--FVEFEEARDAEDAIRGRDGYDFDG 72 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~-g~a--fV~f~~~~~a~~a~~~l~~~~~~g 72 (226)
.+|.|... .++++|..+...++ +..+.+..+-.. + -|. |=.|.+.++|..|+..|....-..
T Consensus 26 YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 34444433 34566777777776 445666543211 2 222 224899999999999876544333
No 431
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=30.52 E-value=16 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.7
Q ss_pred CEEEEEeCCHHHHHHHHHHcCC
Q 027194 147 TTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 147 ~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
|.|.+.|.+.++..-|+.+|-+
T Consensus 78 gqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 78 GQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 5799999999988888876543
No 432
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=24.31 E-value=45 Score=19.24 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=10.4
Q ss_pred CCceEEEEEcCHH
Q 027194 44 PPGYAFVEFEEAR 56 (226)
Q Consensus 44 ~~g~afV~f~~~~ 56 (226)
.++.|+|.|+|..
T Consensus 40 ~~~~ClV~FeD~S 52 (69)
T 2xk0_A 40 TSDQYLIRFDDQS 52 (69)
T ss_dssp CSSCEEEEETTCC
T ss_pred CCceEEEEecCCc
Confidence 3789999998754
No 433
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.29 E-value=76 Score=19.98 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhhh-cCC---eeEEEEec----CCCCCceEEEEEcCHHHHHH
Q 027194 16 GDIREREVEDLFYK-YGP---IAHIDLKI----PPRPPGYAFVEFEEARDAED 60 (226)
Q Consensus 16 ~~~t~~~l~~~f~~-~G~---v~~~~~~~----~~~~~g~afV~f~~~~~a~~ 60 (226)
+..+..+|++.+.. |+. +.-|.=.. .+.+.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888766553 342 22222122 2455677766 777777755
No 434
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=24.28 E-value=1.8e+02 Score=20.42 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=30.3
Q ss_pred eEEecCCCCCCCHHH--------HHHHHHhcCCeeEEEEee-CCCCCEEEEEeCCH
Q 027194 110 RVLVTGLPSSASWQD--------LKDHMRRAGDVCFSQVFR-DGSGTTGIVDYTNY 156 (226)
Q Consensus 110 ~l~v~nl~~~~~~~~--------l~~~f~~~g~v~~~~~~~-~~~~~~a~v~f~~~ 156 (226)
.=++-.||..++.++ +++.|..+|-+..+-|.. +..+..|.|.|.+.
T Consensus 72 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 72 KEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 344567999998754 334455677777777765 33334788887654
No 435
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.27 E-value=1.5e+02 Score=19.31 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC
Q 027194 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
.+++.+.+..+..|..|....+.....+.|...+.++....+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 56788888899999999988877766888999999999999887765
No 436
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=23.82 E-value=73 Score=19.88 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCHHHHHHHhhhcCCeeEEEEecCCCCCceEEE
Q 027194 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFV 50 (226)
Q Consensus 18 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV 50 (226)
.+.+.|.++|+.+|.|..-.+. -|||+-
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l~ 31 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGLF 31 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEEE
Confidence 3567799999999999887775 456655
No 437
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=23.71 E-value=32 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.5
Q ss_pred CCceEEEEEcC
Q 027194 44 PPGYAFVEFEE 54 (226)
Q Consensus 44 ~~g~afV~f~~ 54 (226)
.+||+||+=.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 48999998654
No 438
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=23.46 E-value=1.2e+02 Score=18.71 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHhhhc--------CCeeEEEE--------ecCCCCCc-eEEEEEcCHHHHHHHHH
Q 027194 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (226)
Q Consensus 14 lp~~~t~~~l~~~f~~~--------G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~a~~ 63 (226)
|.|+++++++..+...+ |.|..+.- ...+..+| |.++.|.-...+.+-++
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 46777888877666544 45555443 12333445 78888877666655554
No 439
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.20 E-value=1.2e+02 Score=24.30 Aligned_cols=59 Identities=27% Similarity=0.358 Sum_probs=40.1
Q ss_pred EEEcCCCCCC---C-HHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHhcCCCCCCCce
Q 027194 9 LYVGNLPGDI---R-EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (226)
Q Consensus 9 l~v~nlp~~~---t-~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (226)
-+||||+.-. . ...+.++...||+|..+.+- +.-+|...+++.++.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4678775432 1 35577888899999888763 455677889999999886 3444454444
No 440
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.09 E-value=1.1e+02 Score=17.00 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=41.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCceEEEEEcCHHHHHHHHHh
Q 027194 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (226)
Q Consensus 6 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (226)
..++.|.++.-..=...|...+.. ..|..+.+.. ..+.+.|+|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---cCCEEEEEECCHHHHHHHHHH
Confidence 356788888777778889999988 8888888853 257788888866677777774
No 441
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.97 E-value=41 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCCeeEEEE
Q 027194 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (226)
Q Consensus 7 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~~ 38 (226)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999999999976545554444
No 442
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=22.14 E-value=1.6e+02 Score=18.71 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=19.4
Q ss_pred CCceEEEEEcCHH-----HHHHHHHhcCC
Q 027194 44 PPGYAFVEFEEAR-----DAEDAIRGRDG 67 (226)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~a~~~l~~ 67 (226)
..||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6799999998776 77777876665
No 443
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.11 E-value=1.4e+02 Score=18.09 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.1
Q ss_pred eeEEEEeeCCCCCEEEEEeCCHHHHHHHHHHcCC
Q 027194 135 VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (226)
Q Consensus 135 v~~~~~~~~~~~~~a~v~f~~~~~A~~a~~~l~~ 168 (226)
+..+.+ .....||.||++...++...++....|
T Consensus 40 i~~v~v-P~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILA-SESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEE-CTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEE-ecccCCEEEEEEecchhHHHHHHCCCC
Confidence 344433 334778999999999998888876655
No 444
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=22.09 E-value=77 Score=21.11 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhh-hcCCeeE-EEE--ec----CCCCCceEEEEEcCHHHHHHH
Q 027194 16 GDIREREVEDLFY-KYGPIAH-IDL--KI----PPRPPGYAFVEFEEARDAEDA 61 (226)
Q Consensus 16 ~~~t~~~l~~~f~-~~G~v~~-~~~--~~----~~~~~g~afV~f~~~~~a~~a 61 (226)
+..+..+|++.+. -|+.-.+ |-+ .. .+.+.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4678889987775 4552222 222 22 2455677777 7788777653
No 445
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.01 E-value=36 Score=19.99 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=9.2
Q ss_pred CCCceEEEEEcC
Q 027194 43 RPPGYAFVEFEE 54 (226)
Q Consensus 43 ~~~g~afV~f~~ 54 (226)
..+||+||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 348999998654
No 446
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=21.27 E-value=38 Score=19.21 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=8.3
Q ss_pred CCceEEEEEcC
Q 027194 44 PPGYAFVEFEE 54 (226)
Q Consensus 44 ~~g~afV~f~~ 54 (226)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999998543
No 447
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=21.01 E-value=39 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.3
Q ss_pred CCceEEEEEcC
Q 027194 44 PPGYAFVEFEE 54 (226)
Q Consensus 44 ~~g~afV~f~~ 54 (226)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999998543
Done!