BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027195
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 19 LSWMPRALYFPNFATPEQCKSIINMAKLNL-RPSTLALRKGETVDNTQGIRTSSGVFISA 77
LSW PRA NF + E+C I+ A+ + + S + G++VD+ IRTS+G + +
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 73
Query: 78 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 135
ED + IE+++A+VTM+P N E +L Y GQKY HYD F DP GP+ Q
Sbjct: 74 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 136 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 192
RV + L+YLT +EEGGET+ P E + DG + +C GL VKP +GD L+FYSL P
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALMFYSLKP 188
Query: 193 NGTIDPTSIHGSCPVVKGEKWVATKWIR 220
+G+ DP S+HGSCP +KG+KW ATKWI
Sbjct: 189 DGSNDPASLHGSCPTLKGDKWSATKWIH 216
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 19 LSWMPRALYFPNFATPEQCKSIINMAKLNL-RPSTLALRKGETVDNTQGIRTSSGVFISA 77
LSW PRA NF + E+C I+ A+ + + S + G++VD+ IRTS+G + +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 78 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 135
ED + IE+++A+VTM+P N E +L Y GQKY HYD F DP GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 136 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 192
RV + L+YLT +EEGGET+ P E + DG + +C GL VKP +GD L+FYSL P
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALMFYSLKP 197
Query: 193 NGTIDPTSIHGSCPVVKGEKWVATKWIR 220
+G+ DP S+HGSCP +KG+KW ATKWI
Sbjct: 198 DGSNDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 19 LSWMPRALYFPNFATPEQCKSIINMAKLNL-RPSTLALRKGETVDNTQGIRTSSGVFISA 77
LSW PRA NF + E+C I+ A+ + + S + G++VD+ IRTS+G + +
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 74
Query: 78 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 135
ED + IE+++A+VTM+P N E +L Y GQKY HYD F DP GP+ Q
Sbjct: 75 GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 132
Query: 136 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 192
RV + L+YLT +EEGGET+ P E + DG + +C GL VKP +GD L+FYSL P
Sbjct: 133 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALMFYSLKP 189
Query: 193 NGTIDPTSIHGSCPVVKGEKWVATKWIR 220
+G+ DP S+HGSCP +KG+KW ATKWI
Sbjct: 190 DGSNDPASLHGSCPTLKGDKWSATKWIH 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 127/208 (61%), Gaps = 13/208 (6%)
Query: 19 LSWMPRALYFPNFATPEQCKSIINMAK-LNLRPSTLALRKGETVDNTQGIRTSSGVFISA 77
LSW PRA NF + E+C I+ A+ ++ S + G++VD+ IRTS+G + +
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 78 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 135
ED + IE+++A+VT +P N E +L Y GQKY HYD F DP GP+ Q
Sbjct: 83 GEDS--VISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 136 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 192
RV + L YLT +EEGGET+ P E + DG + +C GL VKP +GD L FYSL P
Sbjct: 141 RVVTXLXYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALXFYSLKP 197
Query: 193 NGTIDPTSIHGSCPVVKGEKWVATKWIR 220
+G+ DP S+HGSCP +KG+KW ATKWI
Sbjct: 198 DGSNDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 25/198 (12%)
Query: 23 PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDES 82
P + N + E+C +I ++K S LA K + + IRTSSG F+ D++
Sbjct: 39 PLIVVLGNVLSDEECDELIELSK-----SKLARSKVGSSRDVNDIRTSSGAFL----DDN 89
Query: 83 GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLV 142
IE++I+ + +P +GE +IL Y++ Q+Y +HYD F + + R+++ +
Sbjct: 90 ELTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYF-AEHSRSAANNRISTLVX 148
Query: 143 YLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIH 202
YL D+EEGGET FP + L V PR+G + F + +++ ++H
Sbjct: 149 YLNDVEEGGETFFP---------------KLNLSVHPRKGXAVYFEYFYQDQSLNELTLH 193
Query: 203 GSCPVVKGEKWVATKWIR 220
G PV KGEKW+AT+W+R
Sbjct: 194 GGAPVTKGEKWIATQWVR 211
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 187 FYSLLPNGTIDPTSIHGSCPVVKGE-------KWVATKWIRDQE 223
+YS+ + + P S+H VV+ E K VAT W+R +E
Sbjct: 415 YYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 458
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 187 FYSLLPNGTIDPTSIHGSCPVVKGE-------KWVATKWIRDQE 223
+YS+ + + P S+H VV+ E K VAT W+R +E
Sbjct: 396 YYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 439
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 187 FYSLLPNGTIDPTSIHGSCPVVKGE-------KWVATKWIRDQE 223
+YS+ + + P S+H VV+ E K VAT W+R +E
Sbjct: 236 YYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 279
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 187 FYSLLPNGTIDPTSIHGSCPVVKGE-------KWVATKWIRDQE 223
+YS+ + + P S+H VV+ E K VAT W+R +E
Sbjct: 236 YYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 279
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 187 FYSLLPNGTIDPTSIHGSCPVVKGE-------KWVATKWIRDQE 223
+YS+ + + P S+H VV+ E K VAT W+R +E
Sbjct: 396 YYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 439
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 75 ISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDP-----QEY 129
++A ++ L ++++ + + +N E + Y Q +N D Q+Y
Sbjct: 123 VAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASY--NQIFNMQQSLLDAIVDTAQKY 180
Query: 130 GPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDY 169
P + V + L+ LT + + GE F + ++G +
Sbjct: 181 HPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTF 220
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 142 VYLTDLEEGGETMFPFEN---GMNADGSYDYQKCIGLKVKPRQGDGLL 186
VY LEE GE PF N + A+GSY Q+ L ++P G G +
Sbjct: 331 VYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYI 378
>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
Length = 311
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 11 VTNIPFQVL-----SWMPRALYFPNFATPEQCKSIINMAKL-NLRPSTLALRKGETVDNT 64
+ NIP +V+ M R PN ++C S+ NMA L +P + GE D
Sbjct: 139 IYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIEHKPEEFLIYTGEDGDAF 198
Query: 65 QGIRTSSGVFISAAEDESG 83
+ + IS A +G
Sbjct: 199 HAMNLGADGVISVASHTNG 217
>pdb|2IJQ|A Chain A, Crystal Structure Of Protein Rrnac1037 From Haloarcula
Marismortui, Pfam Duf309
pdb|2IJQ|B Chain B, Crystal Structure Of Protein Rrnac1037 From Haloarcula
Marismortui, Pfam Duf309
Length = 161
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 111 YKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFE--NGMNADGSYD 168
Y G+ + SH D F+ + Y + + FL + + G F FE +GM +
Sbjct: 43 YNSGEFHESH-DCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101
Query: 169 YQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 211
Q G+ D L + + N DP+++HG + GE
Sbjct: 102 LQYFRGVPNDYYGVDLLDVRTTVTNALSDPSALHGWQIRLDGE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,524,831
Number of Sequences: 62578
Number of extensions: 313479
Number of successful extensions: 700
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 17
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)