Query 027195
Match_columns 226
No_of_seqs 172 out of 1173
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.6E-56 3.5E-61 382.5 20.8 218 5-225 36-256 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 5.8E-53 1.3E-57 356.4 16.3 202 9-225 81-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.3E-38 2.8E-43 254.5 18.2 175 23-220 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 3E-31 6.6E-36 217.5 15.0 166 24-222 1-179 (226)
5 PHA02813 hypothetical protein; 99.8 7.4E-19 1.6E-23 149.9 11.9 137 47-216 35-177 (354)
6 PHA02869 C4L/C10L-like gene fa 99.8 9.6E-19 2.1E-23 151.1 9.9 135 48-217 45-187 (418)
7 COG3128 PiuC Uncharacterized i 99.8 8.6E-18 1.9E-22 131.1 10.8 166 23-222 2-182 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.7 3.2E-18 6.9E-23 123.9 5.7 91 106-220 1-100 (100)
9 KOG3710 EGL-Nine (EGLN) protei 99.1 9.7E-10 2.1E-14 88.8 12.4 170 24-223 54-241 (280)
10 PF03336 Pox_C4_C10: Poxvirus 98.8 1.6E-08 3.4E-13 86.7 8.8 124 65-216 38-164 (339)
11 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.8 1.2E-08 2.6E-13 69.0 4.8 52 103-158 10-65 (70)
12 COG3751 EGL-9 Predicted prolin 98.8 1.4E-07 2.9E-12 78.5 11.9 101 105-223 137-242 (252)
13 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.6 2.4E-08 5.1E-13 71.7 2.7 90 104-220 2-97 (98)
14 TIGR02408 ectoine_ThpD ectoine 98.2 4.9E-05 1.1E-09 64.9 13.6 181 24-219 29-247 (277)
15 PF09859 Oxygenase-NA: Oxygena 98.2 6.3E-06 1.4E-10 63.8 6.5 101 106-221 64-172 (173)
16 PHA02866 Hypothetical protein; 98.1 1.1E-05 2.4E-10 68.0 7.0 104 83-216 59-164 (333)
17 PF13759 2OG-FeII_Oxy_5: Putat 97.9 2.9E-05 6.3E-10 56.1 5.9 88 108-215 4-98 (101)
18 KOG3844 Predicted component of 97.9 0.0002 4.3E-09 62.8 11.3 168 22-223 34-219 (476)
19 PF05721 PhyH: Phytanoyl-CoA d 97.7 5.4E-05 1.2E-09 60.5 5.5 166 25-210 6-206 (211)
20 TIGR01762 chlorin-enz chlorina 97.6 0.0014 3E-08 56.3 12.5 180 24-221 15-249 (288)
21 TIGR02466 conserved hypothetic 97.5 0.00053 1.1E-08 55.8 7.8 90 106-215 98-194 (201)
22 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.4 0.00098 2.1E-08 53.4 8.3 158 25-210 2-177 (194)
23 PF12851 Tet_JBP: Oxygenase do 97.0 0.0024 5.3E-08 50.6 6.6 79 116-220 86-170 (171)
24 PRK15401 alpha-ketoglutarate-d 96.5 0.23 4.9E-06 40.8 14.7 160 21-210 16-196 (213)
25 PHA02923 hypothetical protein; 96.1 0.036 7.8E-07 47.2 8.1 97 83-217 44-142 (315)
26 COG3826 Uncharacterized protei 95.4 0.045 9.8E-07 43.5 5.8 101 106-221 126-234 (236)
27 KOG3200 Uncharacterized conser 94.7 0.11 2.4E-06 41.0 6.2 96 18-124 7-108 (224)
28 PF06822 DUF1235: Protein of u 94.6 0.12 2.6E-06 43.5 6.5 101 82-216 32-132 (266)
29 PHA02985 hypothetical protein; 92.1 0.48 1E-05 39.7 6.1 99 82-216 39-137 (271)
30 PLN02485 oxidoreductase 92.0 1.1 2.4E-05 39.2 8.7 91 105-223 185-289 (329)
31 COG3145 AlkB Alkylated DNA rep 90.8 6.4 0.00014 31.8 11.2 99 67-188 71-170 (194)
32 PLN03001 oxidoreductase, 2OG-F 90.1 2.2 4.7E-05 36.2 8.4 88 105-222 117-214 (262)
33 PLN02984 oxidoreductase, 2OG-F 90.0 3 6.4E-05 36.8 9.5 88 105-222 201-299 (341)
34 PLN02904 oxidoreductase 87.8 4.4 9.6E-05 35.9 9.1 87 105-221 209-305 (357)
35 PLN00417 oxidoreductase, 2OG-F 87.8 4.2 9.1E-05 35.9 8.9 89 105-222 204-302 (348)
36 PLN02639 oxidoreductase, 2OG-F 87.5 5.4 0.00012 35.0 9.4 89 105-222 191-289 (337)
37 PLN02299 1-aminocyclopropane-1 86.5 3.5 7.5E-05 36.0 7.6 89 105-222 159-257 (321)
38 KOG0143 Iron/ascorbate family 86.1 4.8 0.0001 35.2 8.2 88 105-220 177-274 (322)
39 PLN02912 oxidoreductase, 2OG-F 86.0 4 8.7E-05 36.0 7.8 88 105-222 198-295 (348)
40 PLN02750 oxidoreductase, 2OG-F 85.8 7.6 0.00016 34.2 9.5 91 104-222 193-293 (345)
41 PLN02254 gibberellin 3-beta-di 85.7 7 0.00015 34.6 9.3 88 105-221 211-308 (358)
42 COG4340 Uncharacterized protei 85.7 1.4 3E-05 35.3 4.2 52 140-209 148-201 (226)
43 PTZ00273 oxidase reductase; Pr 85.6 4.6 0.0001 35.0 8.0 88 105-222 178-276 (320)
44 PLN02276 gibberellin 20-oxidas 85.5 6.2 0.00013 35.0 8.8 88 104-221 206-303 (361)
45 PLN02216 protein SRG1 85.1 5 0.00011 35.6 8.0 88 105-221 211-308 (357)
46 PLN02515 naringenin,2-oxogluta 84.6 4.6 9.9E-05 35.8 7.5 90 105-222 196-295 (358)
47 PLN02365 2-oxoglutarate-depend 83.0 5.8 0.00013 34.2 7.4 102 92-220 132-248 (300)
48 PF14033 DUF4246: Protein of u 83.0 5.1 0.00011 37.2 7.4 87 118-220 364-477 (501)
49 TIGR00568 alkb DNA alkylation 82.9 8.9 0.00019 30.3 7.8 86 83-188 74-159 (169)
50 PLN02758 oxidoreductase, 2OG-F 82.7 8.5 0.00018 34.1 8.4 88 105-221 212-310 (361)
51 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 82.4 0.88 1.9E-05 36.8 2.0 56 135-209 124-179 (195)
52 PF02668 TauD: Taurine catabol 82.1 1.1 2.5E-05 36.8 2.6 37 174-218 220-258 (258)
53 PLN02403 aminocyclopropanecarb 81.7 7.8 0.00017 33.5 7.7 88 106-222 155-253 (303)
54 PLN02947 oxidoreductase 81.6 13 0.00027 33.3 9.1 87 105-221 226-322 (374)
55 PLN02997 flavonol synthase 80.6 6.1 0.00013 34.5 6.7 88 105-222 184-281 (325)
56 PLN02393 leucoanthocyanidin di 79.9 8.2 0.00018 34.2 7.4 89 105-222 214-312 (362)
57 PLN02156 gibberellin 2-beta-di 78.5 25 0.00055 30.8 9.9 89 105-222 179-279 (335)
58 COG3491 PcbC Isopenicillin N s 77.8 15 0.00034 31.8 8.0 92 102-222 172-273 (322)
59 cd00250 CAS_like Clavaminic ac 77.4 3 6.5E-05 34.9 3.7 40 174-221 219-261 (262)
60 KOG4459 Membrane-associated pr 76.4 0.46 9.9E-06 42.9 -1.6 70 134-220 364-433 (471)
61 KOG3959 2-Oxoglutarate- and ir 76.2 3.5 7.7E-05 34.3 3.6 95 23-125 72-175 (306)
62 PLN02704 flavonol synthase 75.9 8.1 0.00018 33.8 6.1 87 106-222 201-297 (335)
63 PLN03178 leucoanthocyanidin di 72.8 13 0.00029 32.9 6.7 88 105-222 212-309 (360)
64 COG5285 Protein involved in bi 68.2 16 0.00034 31.5 5.8 86 116-214 132-223 (299)
65 PLN03002 oxidoreductase, 2OG-F 59.1 36 0.00078 29.8 6.7 92 105-222 183-285 (332)
66 PRK09965 3-phenylpropionate di 58.3 15 0.00033 26.2 3.6 49 139-210 4-52 (106)
67 cd03528 Rieske_RO_ferredoxin R 57.5 14 0.00031 25.6 3.3 48 141-210 4-51 (98)
68 PRK09553 tauD taurine dioxygen 52.8 10 0.00023 32.1 2.2 33 118-156 95-127 (277)
69 KOG1971 Lysyl hydroxylase [Pos 52.4 11 0.00025 33.8 2.4 79 132-221 278-356 (415)
70 cd03474 Rieske_T4moC Toluene-4 48.8 22 0.00048 25.3 3.1 27 175-210 26-52 (108)
71 cd03530 Rieske_NirD_small_Baci 46.5 29 0.00063 24.1 3.4 25 177-210 28-52 (98)
72 TIGR02410 carnitine_TMLD trime 45.6 23 0.0005 31.3 3.3 38 174-220 312-349 (362)
73 TIGR02409 carnitine_bodg gamma 41.8 28 0.00062 30.8 3.3 38 175-220 314-353 (366)
74 PF00355 Rieske: Rieske [2Fe-2 40.4 27 0.00059 24.1 2.4 29 174-211 26-54 (97)
75 cd04338 Rieske_RO_Alpha_Tic55 40.3 35 0.00075 25.6 3.1 55 135-211 15-70 (134)
76 cd03542 Rieske_RO_Alpha_HBDO R 38.3 30 0.00065 25.6 2.5 51 140-210 3-53 (123)
77 TIGR02409 carnitine_bodg gamma 37.7 34 0.00073 30.3 3.1 37 116-158 186-222 (366)
78 PF05118 Asp_Arg_Hydrox: Aspar 37.4 93 0.002 24.1 5.3 76 104-215 80-155 (163)
79 cd04337 Rieske_RO_Alpha_Cao Ca 36.3 43 0.00093 24.9 3.1 55 135-210 15-69 (129)
80 cd03535 Rieske_RO_Alpha_NDO Ri 36.1 29 0.00064 25.5 2.1 53 138-210 3-55 (123)
81 cd03478 Rieske_AIFL_N AIFL (ap 35.5 43 0.00093 23.1 2.8 26 176-210 25-50 (95)
82 cd00250 CAS_like Clavaminic ac 34.7 49 0.0011 27.5 3.5 37 115-157 94-130 (262)
83 cd05568 PTS_IIB_bgl_like PTS_I 33.8 71 0.0015 21.1 3.7 22 24-45 62-83 (85)
84 PRK02963 carbon starvation ind 32.9 48 0.001 29.0 3.1 33 175-215 267-302 (316)
85 PLN00139 hypothetical protein; 32.5 52 0.0011 28.7 3.4 37 115-157 111-147 (320)
86 TIGR02377 MocE_fam_FeS Rieske 32.0 67 0.0015 22.6 3.4 22 180-210 32-53 (101)
87 KOG4176 Uncharacterized conser 31.6 3.6E+02 0.0078 23.7 8.4 111 84-220 191-303 (323)
88 cd03472 Rieske_RO_Alpha_BPDO_l 31.1 40 0.00086 25.1 2.1 54 136-210 7-61 (128)
89 cd08788 CARD_NOD2_2_CARD15 Cas 30.7 23 0.00051 24.3 0.7 15 28-42 25-39 (81)
90 cd03536 Rieske_RO_Alpha_DTDO T 30.3 52 0.0011 24.2 2.6 25 177-210 29-53 (123)
91 cd03477 Rieske_YhfW_C YhfW fam 27.9 54 0.0012 22.8 2.2 25 177-210 26-50 (91)
92 cd03480 Rieske_RO_Alpha_PaO Ri 27.9 87 0.0019 23.5 3.6 65 135-221 15-84 (138)
93 PRK09553 tauD taurine dioxygen 27.8 73 0.0016 26.9 3.5 40 173-220 232-272 (277)
94 PF07350 DUF1479: Protein of u 27.6 31 0.00066 31.3 1.1 37 174-219 318-355 (416)
95 PF13621 Cupin_8: Cupin-like d 27.5 67 0.0015 26.0 3.1 45 170-223 204-249 (251)
96 PHA02577 2 DNA end protector p 27.5 11 0.00024 29.6 -1.4 50 105-157 34-83 (181)
97 PF02668 TauD: Taurine catabol 26.8 42 0.0009 27.4 1.8 37 116-158 96-132 (258)
98 PF11191 DUF2782: Protein of u 26.8 1.1E+02 0.0023 22.0 3.7 43 174-218 62-105 (105)
99 COG2146 {NirD} Ferredoxin subu 26.5 1.1E+02 0.0024 22.0 3.7 14 197-210 43-56 (106)
100 cd03548 Rieske_RO_Alpha_OMO_CA 26.1 1.1E+02 0.0023 22.9 3.8 55 135-211 12-66 (136)
101 cd03479 Rieske_RO_Alpha_PhDO_l 24.5 96 0.0021 23.5 3.3 52 137-210 21-74 (144)
102 PF04194 PDCD2_C: Programmed c 23.8 92 0.002 24.2 3.1 28 82-118 57-84 (164)
103 cd03531 Rieske_RO_Alpha_KSH Th 23.4 99 0.0021 22.3 3.0 23 179-210 31-53 (115)
104 TIGR02410 carnitine_TMLD trime 22.6 76 0.0017 28.0 2.7 35 117-157 179-213 (362)
105 cd03469 Rieske_RO_Alpha_N Ries 22.5 93 0.002 22.2 2.8 23 179-210 31-53 (118)
106 cd03467 Rieske Rieske domain; 22.0 1.5E+02 0.0033 20.3 3.7 14 197-210 39-52 (98)
107 cd05567 PTS_IIB_mannitol PTS_I 21.8 1.1E+02 0.0024 20.8 2.9 21 23-43 66-86 (87)
108 PF03754 DUF313: Domain of unk 21.5 61 0.0013 23.8 1.6 12 29-40 50-61 (114)
109 PF01448 ELM2: ELM2 domain; I 21.3 2.1E+02 0.0046 17.5 4.2 26 16-46 28-53 (55)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.6e-56 Score=382.55 Aligned_cols=218 Identities=37% Similarity=0.687 Sum_probs=186.6
Q ss_pred CCCCCceeecccEEEeeCccEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCceeccCCCeEeeceeecCCCCCchhH
Q 027195 5 QAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGT 84 (226)
Q Consensus 5 ~~~~~~l~~~p~~~ls~~P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~ 84 (226)
..+.+.+....+|+||++|+|++|+||||++||++||+++++.+.++++....+. ....+++|+|+++|+...+ +++
T Consensus 36 ~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g-~~~~s~~RTS~~~~l~~~~--dpv 112 (310)
T PLN00052 36 VAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSG-KSVMSEVRTSSGMFLDKRQ--DPV 112 (310)
T ss_pred ccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCC-ccccCCCEEecceeecCCC--CHH
Confidence 4566778888889999999999999999999999999999999999988753211 2245679999999998655 479
Q ss_pred HHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCC-
Q 027195 85 LDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNA- 163 (226)
Q Consensus 85 ~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~- 163 (226)
+++|++||++++++|..+.|++||+||++||+|++|+|++........+++|++|+|+||||+++||+|+||.......
T Consensus 113 v~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~ 192 (310)
T PLN00052 113 VSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQ 192 (310)
T ss_pred HHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccccccc
Confidence 9999999999999999999999999999999999999998643222346899999999999999999999998642111
Q ss_pred CCCCCcccc--cceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEecccccccC
Q 027195 164 DGSYDYQKC--IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY 225 (226)
Q Consensus 164 ~~~~~~~~~--~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~~~ 225 (226)
.++..+++| .+++|+|++|+||||+|++++|+.|++++|+||||++|+||++++|||.++++
T Consensus 193 ~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~ 256 (310)
T PLN00052 193 PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256 (310)
T ss_pred ccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence 122345555 48999999999999999999999999999999999999999999999998764
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-53 Score=356.40 Aligned_cols=202 Identities=42% Similarity=0.799 Sum_probs=181.7
Q ss_pred Cceeeccc--EEEeeCccEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCceeccCCCeEeeceeecCCCCCchhHHH
Q 027195 9 DSVTNIPF--QVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLD 86 (226)
Q Consensus 9 ~~l~~~p~--~~ls~~P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~ 86 (226)
|++.++|+ |+|||+|++++||||||++||++|+.++++.+.++++....+++......+|+|+++|+.... +++++
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~ 158 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVS 158 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCC--CHHHH
Confidence 89999998 699999999999999999999999999999999999975555444455668999999999843 57999
Q ss_pred HHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCC--CC--CCCCCCCeEEEEEEEecCcCCCccccCCCCCCCC
Q 027195 87 LIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDP--QE--YGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN 162 (226)
Q Consensus 87 ~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~--~~--~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~ 162 (226)
+|++||++++++|.+..|.|||++|+.||+|.+|+|++.. .. .....++|++|+|+||+|+++||+|+||...
T Consensus 159 ~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~--- 235 (289)
T KOG1591|consen 159 RIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLG--- 235 (289)
T ss_pred HHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCC---
Confidence 9999999999999999999999999999999999999953 11 2235789999999999999999999999843
Q ss_pred CCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEecccccccC
Q 027195 163 ADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY 225 (226)
Q Consensus 163 ~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~~~ 225 (226)
..++|+|++|+|++|+|+.++|..|+++.|++|||..|.||++++|+|.++|.
T Consensus 236 ----------~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 236 ----------MKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ----------CcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 12499999999999999999999999999999999999999999999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=1.3e-38 Score=254.52 Aligned_cols=175 Identities=31% Similarity=0.601 Sum_probs=148.4
Q ss_pred ccEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCceeccCCCeEeeceeecCCCCCchhHHHHHHHHHHHHcCCC---
Q 027195 23 PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLP--- 99 (226)
Q Consensus 23 P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~~~~--- 99 (226)
|.|++++||||++||++|++++++.+.++.+....+.. ...+++|+|..+|+...+ .++++++|.+||..+++++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~ 78 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNP-NHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGL 78 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCc-cccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchh
Confidence 78999999999999999999999977777776433221 134679999999998753 1378999999999999998
Q ss_pred CCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEee
Q 027195 100 RINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 179 (226)
Q Consensus 100 ~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P 179 (226)
....|.+|++||.+|++|.+|+|...... .++|.+|+++||||+++||+|.|+.... .....|+|
T Consensus 79 ~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~-----------~~~~~v~P 143 (178)
T smart00702 79 PLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL-----------MVCATVKP 143 (178)
T ss_pred hccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC-----------ccceEEeC
Confidence 67899999999999999999999986431 2689999999999999999999997431 13469999
Q ss_pred eeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 180 RQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 180 ~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
++|++|+|++.. ++++|++|||++|.||++++|+|
T Consensus 144 ~~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 144 KKGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCcEEEEeCCC------CCccccCCcceeCCEEEEEEEEC
Confidence 999999999742 27999999999999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.97 E-value=3e-31 Score=217.49 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=126.2
Q ss_pred cEEEecCCCCHHHHHHHHHHhhc-CCccceEeccCCceeccCCCeEeeceeecCCCCCchhHHHHHHHHHHHHc------
Q 027195 24 RALYFPNFATPEQCKSIINMAKL-NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT------ 96 (226)
Q Consensus 24 ~i~~~~~fLs~~Ec~~li~~a~~-~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~------ 96 (226)
.|++|+||||++||+++++..++ .+.+..+.. |. ..+++|++.++-.++ ++.+.|.++|.+.+
T Consensus 1 Mi~~I~~vLs~eec~~~~~~le~~~~~dg~~ta--G~---~~~~vKnN~ql~~d~-----~~a~~l~~~i~~~L~~~~l~ 70 (226)
T PRK05467 1 MLLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA--GA---QAAQVKNNQQLPEDS-----PLARELGNLILDALTRNPLF 70 (226)
T ss_pred CeeeecccCCHHHHHHHHHHHHhcCCccCCcCc--Cc---cchhcccccccCCCC-----HHHHHHHHHHHHHHhcCchh
Confidence 47899999999999999999976 565555442 22 245688877664332 46666666666543
Q ss_pred ---CCCCCCCCcceEEecCCCCccccCcCCCCCCCCCC-CCCCeEEEEEEEecCc--CCCccccCCCCCCCCCCCCCCcc
Q 027195 97 ---MLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGP-QKSQRVASFLVYLTDL--EEGGETMFPFENGMNADGSYDYQ 170 (226)
Q Consensus 97 ---~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~-~~~~R~~T~liYLnd~--~~GG~T~Fp~~~~~~~~~~~~~~ 170 (226)
.+|... .+++|+||.+|++|++|+|+......+. ...+|.+|+++||||+ ++||||+|+...
T Consensus 71 ~sa~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~----------- 138 (226)
T PRK05467 71 FSAALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY----------- 138 (226)
T ss_pred hhhcccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC-----------
Confidence 334333 5689999999999999999986432111 1235689999999987 489999998643
Q ss_pred cccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 171 KCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 171 ~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
....|+|++|++|+|++ .++|+|+||++|+||+++.|+++.
T Consensus 139 --g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~ 179 (226)
T PRK05467 139 --GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSL 179 (226)
T ss_pred --CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHH
Confidence 34789999999999997 799999999999999999999874
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.79 E-value=7.4e-19 Score=149.89 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=103.7
Q ss_pred CCccceEecc-CCceeccCCCeEeeceeecCCCCCchhHHHHHHHHHHHHc-CCC----CCCCCcceEEecCCCCccccC
Q 027195 47 NLRPSTLALR-KGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT-MLP----RINGEAFNILRYKIGQKYNSH 120 (226)
Q Consensus 47 ~l~~s~v~~~-~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~-~~~----~~~~E~~qv~rY~~G~~y~~H 120 (226)
.+.+|.+... .|. ....++.|+++++.++.. +.+.++|+..+.+-+ +.+ .+.+|.++++||.+|++|.+|
T Consensus 35 ~~~~s~i~~~~~~g-e~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H 110 (354)
T PHA02813 35 IWEESKVFDHEKGG-EVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNH 110 (354)
T ss_pred CccccceeccccCc-eEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcc
Confidence 4667776652 232 346788999999999853 245555555554433 332 467899999999999999999
Q ss_pred cCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCC
Q 027195 121 YDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTS 200 (226)
Q Consensus 121 ~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~ 200 (226)
.|+..... ...+.+|+|+|||++++||+|.|.... ..+|. .|++|+|. ...
T Consensus 111 ~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~--------------~tsI~--~g~dlLFd---------h~l 161 (354)
T PHA02813 111 RDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD--------------NTIFS--TKNDVLFD---------KTL 161 (354)
T ss_pred cCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC--------------CceEe--ecceEEEe---------ccc
Confidence 99876431 134899999999999999999998642 12455 99999996 589
Q ss_pred cccCCCCccceEEEEE
Q 027195 201 IHGSCPVVKGEKWVAT 216 (226)
Q Consensus 201 ~H~g~PV~~G~K~i~~ 216 (226)
.|+|++|++|.||||.
T Consensus 162 ~Heg~~V~sG~KyVa~ 177 (354)
T PHA02813 162 NHSSDIITDGEKNIAL 177 (354)
T ss_pred ccCCcEeccCeEEEEE
Confidence 9999999999999874
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.78 E-value=9.6e-19 Score=151.10 Aligned_cols=135 Identities=23% Similarity=0.229 Sum_probs=102.6
Q ss_pred CccceEecc-CCceeccCCCeEeeceeecCCCCCchhHHHHHHHHHHHHc-----CC--CCCCCCcceEEecCCCCcccc
Q 027195 48 LRPSTLALR-KGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT-----ML--PRINGEAFNILRYKIGQKYNS 119 (226)
Q Consensus 48 l~~s~v~~~-~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~-----~~--~~~~~E~~qv~rY~~G~~y~~ 119 (226)
+.+|.+... +|. .......|.|++..+.. .+.+.|.+||+.++ +. ..+.+|.++++||.+|++|++
T Consensus 45 ~~~s~i~~~~~g~-e~~~~~~~ksKqii~e~-----~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~ 118 (418)
T PHA02869 45 CEDSKIFFPEKRT-ELLSIKDRKSKQIVFEN-----SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFAR 118 (418)
T ss_pred cccceeeccccCc-eeEeeccccceeEEech-----HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccc
Confidence 456666542 232 12344568898888764 35555666665532 43 456789999999999999999
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCC
Q 027195 120 HYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPT 199 (226)
Q Consensus 120 H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~ 199 (226)
|.|+..... .....+|+|+|||++++||+|.|... ...+|.|++| |+|. ..
T Consensus 119 H~Dg~~~rs----~e~s~~tLLLYLNd~~~GGET~f~~~--------------~~~sI~pksg--LLFd---------h~ 169 (418)
T PHA02869 119 HRDFSTVFS----KNIICVHLLLYLEQPETGGETVIYID--------------NNTSVKLKTD--HLFD---------KT 169 (418)
T ss_pred cccCceecC----CCEEEEEEEEEEeccCCCCceEEEeC--------------CCceEecCCC--eEec---------cc
Confidence 999876432 45578899999999999999999872 3577999999 8996 58
Q ss_pred CcccCCCCccceEEEEEe
Q 027195 200 SIHGSCPVVKGEKWVATK 217 (226)
Q Consensus 200 ~~H~g~PV~~G~K~i~~~ 217 (226)
..|+|++|++|.||||+.
T Consensus 170 l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 170 IEHESITVESGRKCVALF 187 (418)
T ss_pred cccCCcEeecCeEEEEEE
Confidence 999999999999999864
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.75 E-value=8.6e-18 Score=131.10 Aligned_cols=166 Identities=22% Similarity=0.265 Sum_probs=114.1
Q ss_pred ccEEEecCCCCHHHHHHHHHHhhc-CCccceEeccCCceeccCCCeEeeceeecCCCCCchhHHHHHHHHHHH-------
Q 027195 23 PRALYFPNFATPEQCKSIINMAKL-NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAK------- 94 (226)
Q Consensus 23 P~i~~~~~fLs~~Ec~~li~~a~~-~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~------- 94 (226)
+..+.|+.+||+++|.++.+..+. .+....+. ..-.....|++.+.-.+. ++...+..-|.+
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat-----~g~q~a~vk~n~qlp~~s-----~l~~~vg~~il~al~~~pl 71 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRAT-----QGPQGAQVKNNLQLPQDS-----ALARELGNEILQALTAHPL 71 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhccccccccc-----cCcchhhhhccccCCccc-----HHHHHHHHHHHHHHHhchh
Confidence 457889999999999999988753 22222111 111223345544433222 333444333322
Q ss_pred HcC--CCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCe---EEEEEEEecCcC--CCccccCCCCCCCCCCCCC
Q 027195 95 VTM--LPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQR---VASFLVYLTDLE--EGGETMFPFENGMNADGSY 167 (226)
Q Consensus 95 ~~~--~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R---~~T~liYLnd~~--~GG~T~Fp~~~~~~~~~~~ 167 (226)
+++ +|. ..++.+|.+|..|+.|.+|.|+...... +..+.| .+++-++|+|++ +|||++.....
T Consensus 72 ff~aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~h-p~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-------- 141 (229)
T COG3128 72 FFAAALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIH-PGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-------- 141 (229)
T ss_pred HHHhhccc-ccCCchhhhccCCCcccccccCcccccC-CCCCceeEeeeeeeeecCCccccCCceEEEeccc--------
Confidence 122 333 3567899999999999999999865421 122334 456778999985 79999987754
Q ss_pred CcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 168 DYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 168 ~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
....|+-.+|++|+|++ .++|++.||+.|.|+....|+++-
T Consensus 142 -----g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qsl 182 (229)
T COG3128 142 -----GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSL 182 (229)
T ss_pred -----cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHH
Confidence 35788888999999997 899999999999999999998763
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.73 E-value=3.2e-18 Score=123.93 Aligned_cols=91 Identities=32% Similarity=0.545 Sum_probs=70.6
Q ss_pred ceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcC---CCccccCCCCCCCCCCCCCCcccccceEEe----
Q 027195 106 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE---EGGETMFPFENGMNADGSYDYQKCIGLKVK---- 178 (226)
Q Consensus 106 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~---- 178 (226)
+|+.+|.+|++|++|+|... ...+.+|+++|||++. +||+|+|.... .. +.....+.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~--------~~~~~~~~~~~~ 64 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DS--------DDVSREVEDFDI 64 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--T--------SSTCEEEGGGSE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cC--------CCcceEEEeccc
Confidence 58999999999999999864 3579999999999887 99999998642 00 00223333
Q ss_pred -eeeccEEEEeecCCCCCCCCCCcccCCCC-ccceEEEEEeccc
Q 027195 179 -PRQGDGLLFYSLLPNGTIDPTSIHGSCPV-VKGEKWVATKWIR 220 (226)
Q Consensus 179 -P~~G~al~f~n~~~~g~~d~~~~H~g~PV-~~G~K~i~~~W~~ 220 (226)
|+.|++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 65 ~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 65 VPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp E-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred cCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 99999999986 4899999999 8899999999985
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=99.14 E-value=9.7e-10 Score=88.85 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=113.2
Q ss_pred cEEEecCCCCHHHHHHHHHHhhc-----CCccceEeccCCceeccCCCeEeeceeecCCCCCc-hh---HHHHHHHHHHH
Q 027195 24 RALYFPNFATPEQCKSIINMAKL-----NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDE-SG---TLDLIEEKIAK 94 (226)
Q Consensus 24 ~i~~~~~fLs~~Ec~~li~~a~~-----~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~-~~---~~~~i~~ri~~ 94 (226)
.+.+++|||-.+--+.+.+..+. .+.+..+.. +.. ...+++|.....|+...+-. .. +...|..-+.+
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~--~~~-~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h 130 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVS--PDA-FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILH 130 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceecc--CcC-CcchhhccCCceEecCCCCCccceeeecccchhhhhh
Confidence 56789999998877766666553 355555543 111 13457999999999876521 11 11112222222
Q ss_pred H---cCCCCCCCCcceEEecCC-CCccccCcCCCCCCCCCCCCCCeEEEEEEEecC---cC-CCccc-cCCCCCCCCCCC
Q 027195 95 V---TMLPRINGEAFNILRYKI-GQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTD---LE-EGGET-MFPFENGMNADG 165 (226)
Q Consensus 95 ~---~~~~~~~~E~~qv~rY~~-G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd---~~-~GG~T-~Fp~~~~~~~~~ 165 (226)
. .+-....-..--|+.|.- |-.|-.|+|.-. +..|.+|+|.|||. +. .||.+ .||....
T Consensus 131 ~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~----- 198 (280)
T KOG3710|consen 131 CNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGST----- 198 (280)
T ss_pred hccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCC-----
Confidence 1 111111223456889964 668999999853 45799999999994 43 46655 5775432
Q ss_pred CCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEecccccc
Q 027195 166 SYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQE 223 (226)
Q Consensus 166 ~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~ 223 (226)
.-..|.|+-+++||||+ |.+-.|++.|+.. +||.++.|+-...
T Consensus 199 -------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda~ 241 (280)
T KOG3710|consen 199 -------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDAK 241 (280)
T ss_pred -------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEeccc
Confidence 34679999999999999 6889999999995 7999999986643
No 10
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.83 E-value=1.6e-08 Score=86.72 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCeEeeceeecCCCCCchhHHHHHHHHHHHHcCC---CCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEE
Q 027195 65 QGIRTSSGVFISAAEDESGTLDLIEEKIAKVTML---PRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFL 141 (226)
Q Consensus 65 ~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~~~---~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l 141 (226)
...|.|++..+... ..+.+.++|++.|..-+.- .....+.+.+++|..|++|+.|.|..... .....-.+++
T Consensus 38 ~~~r~sk~iv~~~~-~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~Lv 112 (339)
T PF03336_consen 38 HEFRKSKQIVIEDS-LNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLV 112 (339)
T ss_pred ccccccceEEEecc-chHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEE
Confidence 33788888776643 3457888888877654321 23456789999999999999999944332 2356789999
Q ss_pred EEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEE
Q 027195 142 VYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 216 (226)
Q Consensus 142 iYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~ 216 (226)
+|||.+.+||+|.+.-..+ ..-.| ..++-++|. ....|+..+|.+|.|+||.
T Consensus 113 LyL~~~~~GGktkiyi~~~------------~~tvI--~~~~DvLFd---------Ksl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPN------------DNTVI--STSEDVLFD---------KSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCC------------Cceee--eccccEEEe---------ccccccceEeccCeEEEEE
Confidence 9999999999999763221 22224 347778884 6899999999999999864
No 11
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.76 E-value=1.2e-08 Score=69.03 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEec----CcCCCccccCCCC
Q 027195 103 GEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLT----DLEEGGETMFPFE 158 (226)
Q Consensus 103 ~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----d~~~GG~T~Fp~~ 158 (226)
.+.+++++|..|++|++|+|...... ..+|.+|+||||| +...||++.|...
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 56789999999999999999876431 4789999999999 4467898888764
No 12
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=78.53 Aligned_cols=101 Identities=25% Similarity=0.247 Sum_probs=77.4
Q ss_pred cceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCc---CCCccc-cCCCCCCCCCCCCCCcccccceEEeee
Q 027195 105 AFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGET-MFPFENGMNADGSYDYQKCIGLKVKPR 180 (226)
Q Consensus 105 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GG~T-~Fp~~~~~~~~~~~~~~~~~~~~v~P~ 180 (226)
..|+..|.+|.+|..|-|.+.. ...|.+|.++|+|.. +-||++ .|+....... .+ ....+|.|+
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~-----~~-~~~~ti~P~ 204 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNT-----AA-DSFKTIAPV 204 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccccc-----cc-ccccccCCC
Confidence 5799999999999999998864 467999999999974 679999 7776542100 00 124679999
Q ss_pred eccEEEEeecCCCCCCCCCCcccCCCCcc-ceEEEEEecccccc
Q 027195 181 QGDGLLFYSLLPNGTIDPTSIHGSCPVVK-GEKWVATKWIRDQE 223 (226)
Q Consensus 181 ~G~al~f~n~~~~g~~d~~~~H~g~PV~~-G~K~i~~~W~~~~~ 223 (226)
-+++++|.+-. ..+.|.+.+|.. ..|..++.|+|...
T Consensus 205 fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 205 FNSLVFFKSRP------SHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred CceEEEEEecC------CccceeccccccccceEEEeeEEecCC
Confidence 99999998721 247888888543 58999999999765
No 13
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.61 E-value=2.4e-08 Score=71.69 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=56.3
Q ss_pred CcceEEecC---CCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeee
Q 027195 104 EAFNILRYK---IGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPR 180 (226)
Q Consensus 104 E~~qv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~ 180 (226)
+.+++++|. .+..+.+|+|.. .+++|++++ .++|++.|.... ..+.|.|.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-------------~~~~v~~~ 54 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-------------EWVDVPPP 54 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-------------EEEE----
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-------------cccCccCc
Confidence 468999999 888999999974 467999999 667888887632 35677777
Q ss_pred eccEEEEeec-CC--CCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 181 QGDGLLFYSL-LP--NGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 181 ~G~al~f~n~-~~--~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
.+.++++.-- .. .+......+|+++++.+|.|++++.|++
T Consensus 55 ~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 55 PGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 7666665421 11 2334678999999999999999999986
No 14
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.19 E-value=4.9e-05 Score=64.87 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=92.7
Q ss_pred cEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCce--eccCCCeEeeceeecCCCCCchhHH------HHHHHHHHHH
Q 027195 24 RALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGET--VDNTQGIRTSSGVFISAAEDESGTL------DLIEEKIAKV 95 (226)
Q Consensus 24 ~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~--~~~~~~~R~s~~~~l~~~~~~~~~~------~~i~~ri~~~ 95 (226)
.-+++++||+++||+.|.+.++..+....+.. .+.. .......|.....+.. ++++ .+|...++++
T Consensus 29 Gyvvl~~vls~eev~~lr~~i~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~-----~~~~~~l~~~p~l~~~~~~L 102 (277)
T TIGR02408 29 GFLLLENLFSDDEVAALLAEVERMTRDPAIVR-DEEAITEPGSNAVRSIFEVHVL-----SPILARLVRDPRVANAARQI 102 (277)
T ss_pred CEEECcccCCHHHHHHHHHHHHHHHhcccccC-CCcceecCCCCceEEEeccccc-----CHHHHHHHcChHHHHHHHHH
Confidence 34778999999999999998876332211100 0000 0011123321111111 1222 2234445566
Q ss_pred cCCCCCCCCcceEEecC-CCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCC-CccccCCCCCCCC-CC--------
Q 027195 96 TMLPRINGEAFNILRYK-IGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEE-GGETMFPFENGMN-AD-------- 164 (226)
Q Consensus 96 ~~~~~~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~-GG~T~Fp~~~~~~-~~-------- 164 (226)
+|-+....-..-+.+.. .|+.+.||.|...-.........+.+|+.|+|.|+.+ -|.+.|-...-+. ..
T Consensus 103 lG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~~ 182 (277)
T TIGR02408 103 LGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPRD 182 (277)
T ss_pred cCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccch
Confidence 66543221111123333 2457889999753211000112368999999999864 3767664321111 00
Q ss_pred ---CCC-----Ccc---------cc-cceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc-eEEEEEecc
Q 027195 165 ---GSY-----DYQ---------KC-IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG-EKWVATKWI 219 (226)
Q Consensus 165 ---~~~-----~~~---------~~-~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G-~K~i~~~W~ 219 (226)
... +.. +. .-+.+.-++|++|||.. .++|++.|-.+. .|+++-.=+
T Consensus 183 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l~l~y 247 (277)
T TIGR02408 183 NYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNVFMVF 247 (277)
T ss_pred hhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeEEEEE
Confidence 000 000 00 12356679999999974 899999998875 566554433
No 15
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=6.3e-06 Score=63.81 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=75.3
Q ss_pred ceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCc---CCCccccCCCCCCCCCCCCCCcccccceEEeeeec
Q 027195 106 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQG 182 (226)
Q Consensus 106 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G 182 (226)
.-+++|++|++=..|.|-.-...+ -+-+++.||++ +.|||.+......+.. .....+.+.+|
T Consensus 64 plllrY~~gdyn~LHqdlyGe~vF-------PlQvv~lLs~Pg~DftGGEFVltEQrPR~Q--------SR~~V~~L~qG 128 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEHVF-------PLQVVILLSEPGEDFTGGEFVLTEQRPRMQ--------SRAMVLPLRQG 128 (173)
T ss_pred hhhheeCCCCccccccCCCCCccc-------CeEEEEEcCCCCCcccCceEEEEEecCCcc--------CccccCCcCCC
Confidence 468999999999999986422111 24677789986 6899999876554321 14678999999
Q ss_pred cEEEEeecC-C----CCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 183 DGLLFYSLL-P----NGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 183 ~al~f~n~~-~----~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
+|+||..-. | .|-.-..+-|++.+|.+|+++.+-.=||+
T Consensus 129 da~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 129 DALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 999998432 2 13344678999999999999999887765
No 16
>PHA02866 Hypothetical protein; Provisional
Probab=98.08 E-value=1.1e-05 Score=68.00 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCC
Q 027195 83 GTLDLIEEKIAKVT--MLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENG 160 (226)
Q Consensus 83 ~~~~~i~~ri~~~~--~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~ 160 (226)
++..+++ |+..+. .-+.-..+-+.+.+|..|.+|.-|+|....+ ....+-+++++||+.+..||+|.++-.+.
T Consensus 59 ~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~ 133 (333)
T PHA02866 59 QVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED----RHRGREYTLVLHLSSPKNGGKTDVCVGDK 133 (333)
T ss_pred HHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec----cCCceEEEEEEEEeccccCCceEEEeCCC
Confidence 5777766 443321 2223356778999999999999999875432 23457899999999999999999984221
Q ss_pred CCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEE
Q 027195 161 MNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 216 (226)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~ 216 (226)
..+ ..-+=++| |....|+..-|.+|.|.+|-
T Consensus 134 --------------t~i--~~~~DvLF---------DKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 134 --------------TVI--STADDFLL---------EKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred --------------ceE--eeccceee---------eccccccceeeecCcEEEEE
Confidence 112 22234666 46899999999999998764
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.92 E-value=2.9e-05 Score=56.10 Aligned_cols=88 Identities=24% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCC--C----CCcccccceEEeeee
Q 027195 108 ILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADG--S----YDYQKCIGLKVKPRQ 181 (226)
Q Consensus 108 v~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~--~----~~~~~~~~~~v~P~~ 181 (226)
+..|..|++-.+|.= ....++.++||+.++..|.+.|........-. . ..........++|+.
T Consensus 4 ~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---T
T ss_pred EEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCC
Confidence 356778888888841 23479999999988888888887653321110 0 011223568899999
Q ss_pred ccEEEEeecCCCCCCCCCCcccCCCCccc-eEEEE
Q 027195 182 GDGLLFYSLLPNGTIDPTSIHGSCPVVKG-EKWVA 215 (226)
Q Consensus 182 G~al~f~n~~~~g~~d~~~~H~g~PV~~G-~K~i~ 215 (226)
|++|||++ .+.|++.|-... .|+++
T Consensus 73 G~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 73 GDLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TEEEEEET---------TSEEEE----SSS-EEEE
T ss_pred CEEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 99999997 899999999875 66665
No 18
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.88 E-value=0.0002 Score=62.78 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=105.8
Q ss_pred CccE-EEecCCCCHHHHHHHHHHhhc--CCccceEeccCCceeccCCCeEee---ceeecCCCCCc------hhHHHHHH
Q 027195 22 MPRA-LYFPNFATPEQCKSIINMAKL--NLRPSTLALRKGETVDNTQGIRTS---SGVFISAAEDE------SGTLDLIE 89 (226)
Q Consensus 22 ~P~i-~~~~~fLs~~Ec~~li~~a~~--~l~~s~v~~~~g~~~~~~~~~R~s---~~~~l~~~~~~------~~~~~~i~ 89 (226)
.|+- +++++|+++...+.+.+.... ++..-. ..-+|.. +-+-++.-+.+ +.+.+...
T Consensus 34 gPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~-----------tDlyr~~QtgdL~nl~~le~p~lf~~r~~Lyke~r 102 (476)
T KOG3844|consen 34 GPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKE-----------TDLYRVLQTGDLANLEGLEFPALFSFRDSLYKEAR 102 (476)
T ss_pred CCCcceeeeccCCHHHHHHHHHHHhhccchhhhc-----------chhhheeccccccccccccchhHHHHHHHHHHHHH
Confidence 3543 689999998777777755543 222211 0112221 11222221111 12333444
Q ss_pred HHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcC----CCcccc-CCCCCCCCCC
Q 027195 90 EKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE----EGGETM-FPFENGMNAD 164 (226)
Q Consensus 90 ~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~----~GG~T~-Fp~~~~~~~~ 164 (226)
..++.++|.-....-++.+..|..|.+--.|-|-. +.|.+++++||-+.. -||++. ||......
T Consensus 103 ~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~-- 171 (476)
T KOG3844|consen 103 GEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQ-- 171 (476)
T ss_pred HHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccccccC--
Confidence 55666665433334468899999999999997754 679999999999864 488886 44322110
Q ss_pred CCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccce-EEEEEecccccc
Q 027195 165 GSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE-KWVATKWIRDQE 223 (226)
Q Consensus 165 ~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~-K~i~~~W~~~~~ 223 (226)
.+..-.++.|+-...++|.-. +.+.|.+.-|.+-. |..++.|+|...
T Consensus 172 -----P~s~~asl~P~~Nql~fFeVs-------p~SFH~V~Ev~sde~RlSIsGWfH~p~ 219 (476)
T KOG3844|consen 172 -----PKSVAASLEPQWNQLVFFEVS-------PISFHDVEEVLSDEPRLSISGWFHFPQ 219 (476)
T ss_pred -----ccchhhccCcccceEEEEEec-------ccchhhHHHHhccCcceeEeeeecCCc
Confidence 111235589999999999753 79999999999764 599999998653
No 19
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.75 E-value=5.4e-05 Score=60.46 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=84.4
Q ss_pred EEEecCCCCHHHHHHHHHHhhcC----Ccc---ceEeccCCceeccCCCeEeeceeecCCCCC-chhHH-H-HHHHHHHH
Q 027195 25 ALYFPNFATPEQCKSIINMAKLN----LRP---STLALRKGETVDNTQGIRTSSGVFISAAED-ESGTL-D-LIEEKIAK 94 (226)
Q Consensus 25 i~~~~~fLs~~Ec~~li~~a~~~----l~~---s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~-~~~~~-~-~i~~ri~~ 94 (226)
.++++|+|+++||+.|.+..+.. ... ..... .+.. ......++..... ...+. . .+.+.+.+
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFF-DESF-------FGDYTEQLAKSPNFYDLFLHPPRILDLVRA 77 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEE-STSC-------CCTCCCCGCCCHHHHHHHHTHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccc-cccc-------ccccccccccchhhHHHHhhHHHHHHHHHH
Confidence 57899999999999999888652 110 11110 0000 0001111111000 00111 2 45666677
Q ss_pred HcCCCCC----CCCcce-EEecC-CCCcc-ccCcCCCCCCCCCCCCCCeEEEEEEEecCcC-CCccccCCCCCCCCCC--
Q 027195 95 VTMLPRI----NGEAFN-ILRYK-IGQKY-NSHYDAFDPQEYGPQKSQRVASFLVYLTDLE-EGGETMFPFENGMNAD-- 164 (226)
Q Consensus 95 ~~~~~~~----~~E~~q-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GG~T~Fp~~~~~~~~-- 164 (226)
++|-... ....++ +.+-. +|... .||.|...... ....+.+|+.|+|.|+. +.|.+.+-...-+...
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~ 154 (211)
T PF05721_consen 78 LLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEP 154 (211)
T ss_dssp HHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEE
T ss_pred hhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCccc
Confidence 7776532 112221 23332 36665 99999765421 01578999999999984 5566665432211100
Q ss_pred --CCC----Cc---------ccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 165 --GSY----DY---------QKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 165 --~~~----~~---------~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
... .. .....+.+..++|++|||. .+++|++.|-.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 155 HEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTSD 206 (211)
T ss_dssp ECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-SS
T ss_pred ccccccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCCc
Confidence 000 00 1124578999999999997 4999999996643
No 20
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.61 E-value=0.0014 Score=56.31 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=93.7
Q ss_pred cEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCceeccCCCeEeeceeecCCCCCchhHH------HHHHHHHHHHcC
Q 027195 24 RALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTL------DLIEEKIAKVTM 97 (226)
Q Consensus 24 ~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~------~~i~~ri~~~~~ 97 (226)
..++++++||++|++.|.+.++..+....... ... .....|.+...-+ . ++.+ .+|...+++++|
T Consensus 15 Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~~~---~--~~~~~~l~~~~~l~~~~~~llG 85 (288)
T TIGR01762 15 GFIGPFTLYSPEEMKETWKRIRLRLLDRSAAP--YQD--LGGTNIANYDRHL---D--DDFLASHICRPEICHRVESILG 85 (288)
T ss_pred CEEeCcCCCCHHHHHHHHHHHHHHhhcccccc--ccC--CCCceeEeeeecc---c--CHHHHHHhcCHHHHHHHHHHhC
Confidence 34678999999999999998864332111000 000 0011122111101 0 1112 333444556666
Q ss_pred CCCCCCCcceEEecCCCCccccCcCCCCCCCCCC--------CCCCeEEEEEEEecCcC-CCccccCCCCCCCC--CC--
Q 027195 98 LPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGP--------QKSQRVASFLVYLTDLE-EGGETMFPFENGMN--AD-- 164 (226)
Q Consensus 98 ~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~--------~~~~R~~T~liYLnd~~-~GG~T~Fp~~~~~~--~~-- 164 (226)
-+.-..-..-+.+...++.+.||.|.......+. ....+.+|+.|.|.|+. +-|.+.|-...-+. .+
T Consensus 86 ~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~~ 165 (288)
T TIGR01762 86 PNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDET 165 (288)
T ss_pred CcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCcc
Confidence 5443222223445554455899999653211110 11247899999999985 44555542211110 00
Q ss_pred C-------------------CC----------C--c--ccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc-
Q 027195 165 G-------------------SY----------D--Y--QKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG- 210 (226)
Q Consensus 165 ~-------------------~~----------~--~--~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G- 210 (226)
. ++ + . .+...+.+.-++|++++|. ..++|++.|-++.
T Consensus 166 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N~S~~ 236 (288)
T TIGR01762 166 RRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPNSGES 236 (288)
T ss_pred cccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCCCCCC
Confidence 0 00 0 0 0012356777899999997 4899999999874
Q ss_pred -eEEEE-Eecccc
Q 027195 211 -EKWVA-TKWIRD 221 (226)
Q Consensus 211 -~K~i~-~~W~~~ 221 (226)
.|+++ ..|+..
T Consensus 237 ~~R~~~~~ry~~~ 249 (288)
T TIGR01762 237 QMRMGFASRYVPS 249 (288)
T ss_pred ceEEEEEEEEcCC
Confidence 35544 446544
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.49 E-value=0.00053 Score=55.79 Aligned_cols=90 Identities=20% Similarity=0.080 Sum_probs=62.0
Q ss_pred ceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCC-C-----CCCCcccccceEEee
Q 027195 106 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNA-D-----GSYDYQKCIGLKVKP 179 (226)
Q Consensus 106 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~-~-----~~~~~~~~~~~~v~P 179 (226)
.=+.++.+|++-..|. . .+..+|..+||+.+..+|.+.|........ . .......+..+.|+|
T Consensus 98 ~W~ni~~~Gg~h~~H~---H--------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P 166 (201)
T TIGR02466 98 AWVNILPQGGTHSPHL---H--------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPP 166 (201)
T ss_pred EeEEEcCCCCccCceE---C--------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECC
Confidence 3367788999888884 1 245899999999988888888864321100 0 000001123467999
Q ss_pred eeccEEEEeecCCCCCCCCCCcccCCCCcc-ceEEEE
Q 027195 180 RQGDGLLFYSLLPNGTIDPTSIHGSCPVVK-GEKWVA 215 (226)
Q Consensus 180 ~~G~al~f~n~~~~g~~d~~~~H~g~PV~~-G~K~i~ 215 (226)
+.|++|+|++ .+.|++.|-.. ++|+++
T Consensus 167 ~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 167 QEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 9999999997 89999999885 467655
No 22
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=97.39 E-value=0.00098 Score=53.43 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=74.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhc--CCccceEeccCCceeccC-------------CCeEeece-eecCCCCCc-hhHHHH
Q 027195 25 ALYFPNFATPEQCKSIINMAKL--NLRPSTLALRKGETVDNT-------------QGIRTSSG-VFISAAEDE-SGTLDL 87 (226)
Q Consensus 25 i~~~~~fLs~~Ec~~li~~a~~--~l~~s~v~~~~g~~~~~~-------------~~~R~s~~-~~l~~~~~~-~~~~~~ 87 (226)
+++++||||++|.++|++.... .+...... .+...... ..++-+.. .+-...-.+ -+.+..
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~ 79 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP--MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSR 79 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC--CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc--CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHH
Confidence 6789999999999999998863 11111111 01110000 01111110 000000000 123444
Q ss_pred HHHHHHHHcC-CCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCC
Q 027195 88 IEEKIAKVTM-LPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGS 166 (226)
Q Consensus 88 i~~ri~~~~~-~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~ 166 (226)
+.+++....+ .+........+..|..|+.-.+|.|.... ..+..++|+.+ |+..+|-.....
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~----- 142 (194)
T PF13532_consen 80 LLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS----- 142 (194)
T ss_dssp HHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG-----
T ss_pred HHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc-----
Confidence 4455554444 22222345677889999999999998732 13567777775 233333221100
Q ss_pred CCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 167 YDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 167 ~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
.....+.|.-..|+++++.. ...... |++.|+..+
T Consensus 143 ---~~~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 ---DDDEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp ---GTS-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred ---CCCccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 00145789999999999963 333345 999998874
No 23
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.00 E-value=0.0024 Score=50.61 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=60.4
Q ss_pred ccccCcCCCCCCCCCCCCCCeEEEEEEEecCc-CCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCC
Q 027195 116 KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNG 194 (226)
Q Consensus 116 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g 194 (226)
....|.|.... +--+++++-|.-. +.||..++|..+.. -.+++|.+..|++|+|-.
T Consensus 86 ~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~~----------~~g~~~~~~~GtVl~~~~----- 142 (171)
T PF12851_consen 86 CTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDPN----------ILGVAFAYQPGTVLIFCA----- 142 (171)
T ss_pred CccceecCCCC--------CCCeEEEEecCCccccCceEeccccccc----------cCCEEEecCCCcEEEEcc-----
Confidence 35577776542 2347777777644 89999999973211 158999999999999975
Q ss_pred CCCCCCcccCCCCcc-----ceEEEEEeccc
Q 027195 195 TIDPTSIHGSCPVVK-----GEKWVATKWIR 220 (226)
Q Consensus 195 ~~d~~~~H~g~PV~~-----G~K~i~~~W~~ 220 (226)
....|+..||.. |+|+.+.-+.|
T Consensus 143 ---~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ---KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ---cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 578999999997 99999988876
No 24
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=96.48 E-value=0.23 Score=40.78 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=90.7
Q ss_pred eCccEEEecCCCCHHHHHHHHHHhhc-----CCccceEeccCCce-----------e--ccCCCeEeeceeecCCCCCch
Q 027195 21 WMPRALYFPNFATPEQCKSIINMAKL-----NLRPSTLALRKGET-----------V--DNTQGIRTSSGVFISAAEDES 82 (226)
Q Consensus 21 ~~P~i~~~~~fLs~~Ec~~li~~a~~-----~l~~s~v~~~~g~~-----------~--~~~~~~R~s~~~~l~~~~~~~ 82 (226)
..|.++++++|+ .++.++|++..+. .+..- .. ..|.. . .....||-|...-... ....
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~-~~-~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~-~pwp 91 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHM-VT-PGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTG-KPWP 91 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccce-ec-CCCCcceeEEeccccceEecCCCCcccCCcCCCCC-CCCC
Confidence 568899999996 8888888766654 12221 11 11110 0 0012344432110111 0011
Q ss_pred h---HHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCC
Q 027195 83 G---TLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFEN 159 (226)
Q Consensus 83 ~---~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~ 159 (226)
+ .+..|.++++...+.+.-..+..-|..|.+|+.-.+|.|..... ...-++++.+ |..-.|....
T Consensus 92 ~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~ 159 (213)
T PRK15401 92 AMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGG 159 (213)
T ss_pred CchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecc
Confidence 2 57778888888777644444667899999999999999974221 1233555553 3333443211
Q ss_pred CCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 160 GMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
... .....+|.-..|++||+-. .. ...+|++-|+..|
T Consensus 160 ~~~--------~~~~~~l~L~~Gdllvm~G-----~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 160 LKR--------SDPLQRILLEHGDVVVWGG-----PS-RLRYHGILPLKAG 196 (213)
T ss_pred cCC--------CCceEEEEeCCCCEEEECc-----hH-hheeccCCcCCCC
Confidence 000 0134789999999999953 22 3567999888764
No 25
>PHA02923 hypothetical protein; Provisional
Probab=96.08 E-value=0.036 Score=47.19 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHcCCC--CCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCC
Q 027195 83 GTLDLIEEKIAKVTMLP--RINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENG 160 (226)
Q Consensus 83 ~~~~~i~~ri~~~~~~~--~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~ 160 (226)
.+.+.|++.|-.-+... ......+-+..|++|.+ .|. . ....-..+++||+.+..||+|.|+...
T Consensus 44 di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~- 110 (315)
T PHA02923 44 DISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPE- 110 (315)
T ss_pred HHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCC-
Confidence 47777777775543321 22344588999999985 111 0 133678999999999999999988632
Q ss_pred CCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEe
Q 027195 161 MNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATK 217 (226)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~ 217 (226)
..| ..-+=++| |....|+..-|.+|.|.||-.
T Consensus 111 --------------t~i--~~~~DvLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 --------------TVI--TSSEDIMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred --------------CeE--eeccceee---------ecccccceeeeecCcEEEEEE
Confidence 122 22233666 468999999999999998755
No 26
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.045 Score=43.47 Aligned_cols=101 Identities=22% Similarity=0.210 Sum_probs=72.0
Q ss_pred ceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCc---CCCccccCCCCCCCCCCCCCCcccccceEEeeeec
Q 027195 106 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQG 182 (226)
Q Consensus 106 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G 182 (226)
.-+++|++|++=-.|.|-.-... =-+-+.|-|+++ +.|||.+......+. +.....|.-.+|
T Consensus 126 pLlLqYgpgD~NcLHQDLYGelv-------FPLQvailLsePg~DfTGGEF~lvEQRPR~--------QSr~~vvpLrqG 190 (236)
T COG3826 126 PLLLQYGPGDYNCLHQDLYGELV-------FPLQVAILLSEPGTDFTGGEFVLVEQRPRM--------QSRPTVVPLRQG 190 (236)
T ss_pred ceeEEecCCccchhhhhhhhcee-------eeeeEEEeccCCCCcccCceEEEEeccccc--------ccCCceeeccCC
Confidence 46899999999999988642211 124566779987 479998876544332 114567888999
Q ss_pred cEEEEeecCC--C---CCCCCCCcccCCCCccceEEEEEecccc
Q 027195 183 DGLLFYSLLP--N---GTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 183 ~al~f~n~~~--~---g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
++++|-..+. + |-...-+-|++.-+.+|+++.+-+=|++
T Consensus 191 ~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 191 DGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred ceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 9999975432 2 3334567899999999999988877765
No 27
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.11 Score=41.01 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=55.9
Q ss_pred EEeeCccEEEecCCCCHHHHHHHHHHhhcCCccceEec------cCCceeccCCCeEeeceeecCCCCCchhHHHHHHHH
Q 027195 18 VLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLAL------RKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEK 91 (226)
Q Consensus 18 ~ls~~P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~------~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~r 91 (226)
++...|.+++|+||+++||-..+++..+..-++-.... +-|.- . -....+. .+-+ +-++++...
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGv---v-----h~~glip-eelP-~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGV---V-----HKTGLIP-EELP-PWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCc---c-----ccCCcCc-cccC-HHHHHHHHH
Confidence 45667899999999999999999998875322221111 00110 0 0111222 1212 234555555
Q ss_pred HHHHcCCCCCCCCcceEEecCCCCccccCcCCC
Q 027195 92 IAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF 124 (226)
Q Consensus 92 i~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~ 124 (226)
|.. +|+=.+.....-|..|.+||.--||.|+-
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 553 23322233456788899999999999984
No 28
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=94.58 E-value=0.12 Score=43.46 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCC
Q 027195 82 SGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGM 161 (226)
Q Consensus 82 ~~~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~ 161 (226)
..+++.|++++.+ +.-.++.+++..|+.|+-++.-.+ ...+..++|+-|+.+..||..++......
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~----------~~~~~sr~lvCi~sakkGG~iii~~~~~~ 97 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQ----------DNSSLSRILVCIQSAKKGGCIIIRNTISN 97 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceecccc----------CCCcceeEEEEeeccccCCeEEEeecccC
Confidence 4567777776633 444567899999999987753211 12457899999999999999988654321
Q ss_pred CCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEE
Q 027195 162 NADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 216 (226)
Q Consensus 162 ~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~ 216 (226)
....++|..|.||+-. +....-+.+|++|.-.++.
T Consensus 98 -----------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~ 132 (266)
T PF06822_consen 98 -----------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIV 132 (266)
T ss_pred -----------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEE
Confidence 3578999999999986 4677888899999776654
No 29
>PHA02985 hypothetical protein; Provisional
Probab=92.12 E-value=0.48 Score=39.72 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCC
Q 027195 82 SGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGM 161 (226)
Q Consensus 82 ~~~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~ 161 (226)
..+++.|++++.+ +.-..+.+++..|+.|+.|..- ...|+..+|+-+..+..||..+-......
T Consensus 39 ~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~~------------~~~~~SkilICiqsAkkGG~iIi~~~~~~ 102 (271)
T PHA02985 39 KIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQN------------IPSRLSKIIICIQSAKKGGCIIIINNITN 102 (271)
T ss_pred hHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEee------------CCCCceeEEEEEeecccCCEEEEeccccc
Confidence 4677777777733 3334567889988888554221 23467899999999999999987442111
Q ss_pred CCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEE
Q 027195 162 NADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 216 (226)
Q Consensus 162 ~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~ 216 (226)
..-.++|..|.||+-. +.+-..+.+|.+|.-.++.
T Consensus 103 -----------~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~ 137 (271)
T PHA02985 103 -----------NKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIV 137 (271)
T ss_pred -----------CceEEecCCCeEEEec---------chhhceEEEecCCcEEEEE
Confidence 3578999999999986 4788888899999766554
No 30
>PLN02485 oxidoreductase
Probab=91.99 E-value=1.1 Score=39.17 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=56.4
Q ss_pred cceEEecCCCC----------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccc
Q 027195 105 AFNILRYKIGQ----------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIG 174 (226)
Q Consensus 105 ~~qv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~ 174 (226)
.+++++|.+.. .-.+|+|.. .+|+| +.|...||-=+.... ...
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~~~GLqV~~~~-------------g~W 237 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLV--NQDDDITALQVRNLS-------------GEW 237 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC------------eEEEE--eccCCCCeeeEEcCC-------------CcE
Confidence 47899997632 145677763 47776 344444564444321 146
Q ss_pred eEEeeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccccc
Q 027195 175 LKVKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQE 223 (226)
Q Consensus 175 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~ 223 (226)
+.|.|..|.+||--- ...+|. =..++|++.+.....||.+..+++-..
T Consensus 238 i~V~p~pg~~vVNiGD~L~~~TnG~-~~St~HRVv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 238 IWAIPIPGTFVCNIGDMLKIWSNGV-YQSTLHRVINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred EECCCCCCcEEEEhHHHHHHHHCCE-eeCCCceecCCCCCCeEEEEEEecCCC
Confidence 899999999887421 111221 246899998665557999988876543
No 31
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=90.82 E-value=6.4 Score=31.85 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=61.6
Q ss_pred eEeeceeecCCCCCchhHHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecC
Q 027195 67 IRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTD 146 (226)
Q Consensus 67 ~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd 146 (226)
+|.+...-+..... +.+-.+...+....|.+....|..-+..|.+|+.-.+|.|..... ...-++++.+=.+.
T Consensus 71 y~y~~~~p~~~~p~--p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSLg~~~ 143 (194)
T COG3145 71 YRYSLRSPLTGKPW--PPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSLGAPC 143 (194)
T ss_pred ccccccccCCCCCC--CccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEecCCCe
Confidence 55554444333211 233445556666788888888889999999999999999976431 11124555443333
Q ss_pred cC-CCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEe
Q 027195 147 LE-EGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFY 188 (226)
Q Consensus 147 ~~-~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~ 188 (226)
.+ -||... - ....++.-..|++|++-
T Consensus 144 ~F~~~~~~r-~---------------~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 144 IFRLRGRRR-R---------------GPGLRLRLEHGDVVVMG 170 (194)
T ss_pred EEEeccccC-C---------------CCceeEEecCCCEEEec
Confidence 32 133222 1 14688999999999996
No 32
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.07 E-value=2.2 Score=36.17 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred cceEEecCCC------CccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIG------QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+- -...+|+|.. .+|+|+. +++ ||-=+... ...+.|.
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~v--~GLqV~~~--------------g~Wi~V~ 167 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DDV--EGLQLLKD--------------AEWLMVP 167 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CCC--CceEEeeC--------------CeEEECC
Confidence 4788999762 1256787753 5788754 333 55333321 1578999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|..||--- ...+|. =..++|++.-.....||.+..+++-.
T Consensus 168 p~p~a~vVNiGD~l~~~tng~-~~S~~HRVv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 168 PISDAILIIIADQTEIITNGN-YKSAQHRAIANANKARLSVATFHDPA 214 (262)
T ss_pred CCCCcEEEEccHHHHHHhCCc-cccccceEEcCCCCCEEEEEEEEcCC
Confidence 99998887421 112222 24688999755556799998887643
No 33
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.04 E-value=3 Score=36.76 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=55.0
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++++|.+.. ...+|+|.. .+|+|+- ++ .||=-+... ...+.|.
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q-d~--v~GLQV~~~--------------g~Wv~V~ 251 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ-DE--VGGLEVMKD--------------GEWFNVK 251 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe-CC--CCCeeEeeC--------------CceEECC
Confidence 58999997632 245777763 4788854 33 355334321 1579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCC-CCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSC-PVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~-PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|.. ..++|++. +-....||.+..+++-.
T Consensus 252 p~pgalVVNiGD~Le~wTNg~~-kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 252 PIANTLVVNLGDMMQVISDDEY-KSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred CCCCeEEEECChhhhhhcCCee-eCCCCccccCCCCCCeEEEEEEecCC
Confidence 99999888531 1122221 46899994 33345799998887644
No 34
>PLN02904 oxidoreductase
Probab=87.81 E-value=4.4 Score=35.90 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=53.7
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+.. .-.+|+|.. .+|+|+ .|+ ||-=+.... ...+.|+
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~GLQV~~~~-------------g~Wi~V~ 259 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QGLQIMDCN-------------KNWVCVP 259 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--CeeeEEeCC-------------CCEEECC
Confidence 47889998631 244777763 588885 453 453333221 1479999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
|..|.+||--- ...+|. =..++|++......+||.+..++.-
T Consensus 260 p~pgalVVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 260 YIEGALIVQLGDQVEVMSNGI-YKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred CCCCeEEEEccHHHHHHhCCe-eeccCCcccCCCCCCEEEEEEeecC
Confidence 99999888421 011221 1478999964445689999887653
No 35
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.80 E-value=4.2 Score=35.89 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=55.6
Q ss_pred cceEEecCCC------CccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIG------QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+- -...+|+|.. .+|+| +.|...||-=+... ...+.|.
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------------g~Wi~V~ 255 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLL--LPDKDVEGLQFLKD--------------GKWYKAP 255 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEE--EecCCCCceeEeEC--------------CeEEECC
Confidence 3789999652 1245788763 47877 44433455333321 1579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|. =..++|++.+.....||.+..+++-.
T Consensus 256 p~pg~lVVNiGD~Le~~Tng~-~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 256 IVPDTILINVGDQMEIMSNGI-YKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred CCCCcEEEEcChHHHHHhCCe-ecccceEEecCCCCCEEEEEEEecCC
Confidence 99999888521 011222 24789999765566899998887643
No 36
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.48 E-value=5.4 Score=34.99 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=54.8
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+-. ...+|+|.. .+|+|+ .|...||-=++.. + ..+.|.
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~GLQV~~~--g------------~Wi~V~ 242 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILL--QDQQVAGLQVLKD--G------------KWVAVN 242 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEE--ecCCcCceEeecC--C------------eEEecc
Confidence 57888897631 145777763 477774 3433455444421 1 579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|. =..++|++-......||.+..+++-.
T Consensus 243 p~pg~lVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 243 PHPGAFVINIGDQLQALSNGR-YKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred CCCCeEEEechhHHHHHhCCe-eeccCcccccCCCCCEEEEEEEecCC
Confidence 99999888421 011222 14689998543346799998887643
No 37
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=86.50 E-value=3.5 Score=35.98 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=56.1
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+-. ...+|+|.. .+|+| +.|...||-=+... ...+.|+
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------------g~Wi~V~ 210 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSGLQLLKD--------------GEWVDVP 210 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCCcCcccC--------------CeEEECC
Confidence 37899998621 255788763 47777 44433455444321 1578999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|.. ..+.|++.....+.||.+..+++-.
T Consensus 211 p~pg~lvVNiGD~l~~~Tng~~-kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 211 PMRHSIVVNLGDQLEVITNGKY-KSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred CCCCeEEEEeCHHHHHHhCCce-ecccceeecCCCCCEEEEEEEecCC
Confidence 99998887421 1122322 4789999754567899998887643
No 38
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=86.10 E-value=4.8 Score=35.19 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=57.7
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
-+++.+|.+.- -..+|+|.. .+|+| |.|...||--+|.. + ...+.|+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~-d------------g~Wi~V~ 229 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTK-D------------GKWIDVP 229 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEec-C------------CeEEECC
Confidence 67888898742 277888763 36777 55545578777751 1 1579999
Q ss_pred eeeccEEEEe----ecCCCCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 179 PRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 179 P~~G~al~f~----n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
|.+|..||=- ....||. =...+|++..-...+|+.+..++-
T Consensus 230 P~p~a~vVNiGD~l~~lSNG~-ykSv~HRV~~n~~~~R~Sia~F~~ 274 (322)
T KOG0143|consen 230 PIPGAFVVNIGDMLQILSNGR-YKSVLHRVVVNGEKERISVAFFVF 274 (322)
T ss_pred CCCCCEEEEcccHHhHhhCCc-ccceEEEEEeCCCCceEEEEEEec
Confidence 9997776631 0112232 247799999888778887766654
No 39
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.97 E-value=4 Score=36.01 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=54.9
Q ss_pred cceEEecCCC------CccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIG------QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+- -.-.+|+|.. .+|+|+- | ..||-=++.. ...+.|+
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~--------------g~Wi~V~ 248 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKD--------------GKWIAVN 248 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEEC--------------CcEEECC
Confidence 5788999872 1245777763 4788743 4 2355444421 1579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|. =..++|++.....+.||.+..+++-.
T Consensus 249 p~pgalvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 249 PIPNTFIVNLGDQMQVISNDK-YKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred CcCCeEEEEcCHHHHHHhCCE-EEcccccccCCCCCCEEEEEEEecCC
Confidence 99999887421 112222 24789998544456799998887644
No 40
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.84 E-value=7.6 Score=34.18 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=55.6
Q ss_pred CcceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEE
Q 027195 104 EAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 177 (226)
Q Consensus 104 E~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v 177 (226)
..+++++|.+-. ...+|+|.. .+|+|+ .|. .||-=++.... ...+.|
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~--qd~-v~GLQV~~~~~------------g~Wi~V 245 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLA--QDD-VGGLQISRRSD------------GEWIPV 245 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC------------eEEEEe--cCC-CCceEEeecCC------------CeEEEc
Confidence 358899997631 255787763 577773 342 45544432111 147999
Q ss_pred eeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 178 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 178 ~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
+|..|..||--- ...+|. =..++|++.......||.+..+++-.
T Consensus 246 ~p~pg~~vVNiGD~L~~~Tng~-~~St~HRVv~~~~~~R~Si~~F~~P~ 293 (345)
T PLN02750 246 KPIPDAFIINIGNCMQVWTNDL-YWSAEHRVVVNSQKERFSIPFFFFPS 293 (345)
T ss_pred cCCCCeEEEEhHHHHHHHhCCe-eecccceeccCCCCCEEEEEEeecCC
Confidence 999998887320 112222 24789999755456799998887654
No 41
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=85.75 E-value=7 Score=34.64 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=54.5
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+.. ...+|+|.. .+|+|+. ++ .||-=++... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q-d~--v~GLQV~~~~-------------~~Wi~V~ 262 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ-SN--TSGLQVFREG-------------VGWVTVP 262 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec-CC--CCCceEECCC-------------CEEEEcc
Confidence 46788898631 256777763 5888864 33 3554444321 1479999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
|..|.+||--- ...+|. =..++|++-.-....||.+..++.-
T Consensus 263 p~pgalVVNiGD~lq~~SNg~-~kS~~HRVv~~~~~~R~Sia~F~~P 308 (358)
T PLN02254 263 PVPGSLVVNVGDLLHILSNGR-FPSVLHRAVVNKTRHRISVAYFYGP 308 (358)
T ss_pred cCCCCEEEEhHHHHHHHhCCe-eccccceeecCCCCCEEEEEEEecC
Confidence 99999998431 112232 2478999954334578988877653
No 42
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.74 E-value=1.4 Score=35.32 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=32.1
Q ss_pred EEEEecCc--CCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCcc
Q 027195 140 FLVYLTDL--EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK 209 (226)
Q Consensus 140 ~liYLnd~--~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~ 209 (226)
+.|.+-|= -.||+|..+...... .+..---..|.+++-. |.+.+|.+||+.-
T Consensus 148 I~I~~vDR~NI~gGet~lY~~~~~~----------p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 148 IIIMLVDRQNIDGGETDLYAPDGAS----------PGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEEeeeccccCceEEEEccCCCC----------cceEEeccCCcEEEec--------cchhcccccceec
Confidence 34445553 379999987643211 2333334556665543 6899999999874
No 43
>PTZ00273 oxidase reductase; Provisional
Probab=85.57 E-value=4.6 Score=35.05 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=53.4
Q ss_pred cceEEecCCCC-------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEE
Q 027195 105 AFNILRYKIGQ-------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 177 (226)
Q Consensus 105 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v 177 (226)
.+++++|.+.. .-.+|+|.. .+|+|+ .|. .||-=++... ...+.|
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~-~~GLqV~~~~-------------g~Wi~V 229 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QDS-VGGLQVRNLS-------------GEWMDV 229 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cCC-CCceEEECCC-------------CCEEeC
Confidence 47889997631 134677653 578874 342 3553344321 146899
Q ss_pred eeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 178 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 178 ~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
+|..|.+||--- ...+|. =..++|++... ..+||.+..+++-.
T Consensus 230 ~p~pg~lvVNvGD~l~~~TnG~-~kSt~HRVv~~-~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 230 PPLEGSFVVNIGDMMEMWSNGR-YRSTPHRVVNT-GVERYSMPFFCEPN 276 (320)
T ss_pred CCCCCeEEEEHHHHHHHHHCCe-eeCCCccccCC-CCCeEEEEEEEcCC
Confidence 999999887521 112222 14689999743 35799988877644
No 44
>PLN02276 gibberellin 20-oxidase
Probab=85.49 E-value=6.2 Score=35.01 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=55.3
Q ss_pred CcceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEE
Q 027195 104 EAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 177 (226)
Q Consensus 104 E~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v 177 (226)
.-+++.+|.+.. .-.+|+|.. .+|+|+- | ..||-=+... ...+.|
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~--------------g~Wi~V 256 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVD--------------NKWRSV 256 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEEC--------------CEEEEc
Confidence 357888897641 245777753 5788753 4 3455444421 157999
Q ss_pred eeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 178 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 178 ~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
+|..|.+||--- ...+|. =..++|++..-....||.+..+++-
T Consensus 257 ~p~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 257 RPRPGALVVNIGDTFMALSNGR-YKSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred CCCCCeEEEEcHHHHHHHhCCc-cccccceeecCCCCCEEEEEEEecC
Confidence 999999998531 111222 2478999854445689999888764
No 45
>PLN02216 protein SRG1
Probab=85.12 E-value=5 Score=35.56 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+-. ...+|+|.. .+|+|+--++ .||-=+... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~GLQV~~~--------------g~Wi~V~ 262 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEGLQIKKD--------------GKWVSVK 262 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCceeEEEC--------------CEEEECC
Confidence 47888997631 245777753 5777744343 456444321 1579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
|..|.+||--- ...+|. =..++|++.......||.+..++.-
T Consensus 263 p~pgalvVNiGD~L~~~TNG~-~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 263 PLPNALVVNVGDILEIITNGT-YRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccCceeecCCCCCEEEEEEEecC
Confidence 99998888421 112222 2478999854445679998887654
No 46
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=84.58 E-value=4.6 Score=35.82 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=54.2
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+-. ...+|+|.. .+|+|+- |. .||-=+..... ...+.|+
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q--d~-v~GLQV~~~~~------------~~Wi~Vp 248 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ--DQ-VGGLQATRDGG------------KTWITVQ 248 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec--CC-CCceEEEECCC------------CeEEECC
Confidence 46788887621 255787763 5788744 32 35533332211 0378999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|.. ..++|++-....+.||.+..+++-.
T Consensus 249 p~pgalVVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Si~~F~~P~ 295 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYLSNGRF-KNADHQAVVNSNCSRLSIATFQNPA 295 (358)
T ss_pred CCCCeEEEEccHHHHHHhCCee-eeecceEECCCCCCEEEEEEEecCC
Confidence 99998887421 1123322 4789998655556899998887643
No 47
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=83.04 E-value=5.8 Score=34.19 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHcCC-CCCC----CCcceEEecCCC-----C-ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCC
Q 027195 92 IAKVTML-PRIN----GEAFNILRYKIG-----Q-KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENG 160 (226)
Q Consensus 92 i~~~~~~-~~~~----~E~~qv~rY~~G-----~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~ 160 (226)
++..+|+ +... ...+++++|.+- . .-.+|+|.. .+|+|+. |...||-=+.....
T Consensus 132 la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~GLqV~~~~~- 196 (300)
T PLN02365 132 LAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGGLEVMDPSS- 196 (300)
T ss_pred HHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCceEEEECCC-
Confidence 3334577 4322 235789999542 1 245677653 4788743 43345533333211
Q ss_pred CCCCCCCCcccccceEEeeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 161 MNADGSYDYQKCIGLKVKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
...+.|.|..|.+||--- ...+|. =..++|++......+||.+..++.
T Consensus 197 -----------g~Wi~V~p~pga~vVNiGD~l~~~TNG~-~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 197 -----------GEFVPVDPLPGTLLVNLGDVATAWSNGR-LCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred -----------CeEEecCCCCCeEEEEhhHHHHHHhCCc-eecccceeEcCCCCCEEEEEEEec
Confidence 147899999999888421 111222 247899997554557999888764
No 48
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=83.02 E-value=5.1 Score=37.23 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=53.8
Q ss_pred ccCcCCCCCCCCCCCCCCeEEEEEEEecCc-CCCccccCCCCCC-CC------C---C-CC----CCccc---c--cceE
Q 027195 118 NSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENG-MN------A---D-GS----YDYQK---C--IGLK 176 (226)
Q Consensus 118 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GG~T~Fp~~~~-~~------~---~-~~----~~~~~---~--~~~~ 176 (226)
.||+++.. +.+-.+|.|.|+... -....+.|-.... .. . + .+ ++... + .--+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 68888864 356789999999843 2334555644331 11 0 0 00 11111 1 1236
Q ss_pred EeeeeccEEEEeecCCCCCCCCCCcccCCCCc------cceEEEEEeccc
Q 027195 177 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVV------KGEKWVATKWIR 220 (226)
Q Consensus 177 v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~------~G~K~i~~~W~~ 220 (226)
|.-+.|++|+|+| ...|.+.|.. .|.+-+++.|+=
T Consensus 437 v~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLv 477 (501)
T PF14033_consen 437 VETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLV 477 (501)
T ss_pred EEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEec
Confidence 8889999999999 5678777654 487778888764
No 49
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=82.93 E-value=8.9 Score=30.26 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCC
Q 027195 83 GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN 162 (226)
Q Consensus 83 ~~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~ 162 (226)
+.+..|.++++...+.+....+..-|..|.+|+.-.+|.|.... ....-++++.+ |-.-+|-.....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~-----~~~~pI~SvSL-------G~~r~F~~~~~~- 140 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEP-----DLRAPLLSVSL-------GLPAIFLIGGLK- 140 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccc-----cCCCCEEEEeC-------CCCEEEEecCCc-
Confidence 46788888999888875555667788999999999999995221 11223444432 222233221100
Q ss_pred CCCCCCcccccceEEeeeeccEEEEe
Q 027195 163 ADGSYDYQKCIGLKVKPRQGDGLLFY 188 (226)
Q Consensus 163 ~~~~~~~~~~~~~~v~P~~G~al~f~ 188 (226)
.+.....+.-..|++||+.
T Consensus 141 -------~~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 141 -------RNDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred -------CCCceEEEEeCCCCEEEEC
Confidence 0013578999999999995
No 50
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.67 E-value=8.5 Score=34.14 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=53.9
Q ss_pred cceEEecCCC----C--ccccCcCCCCCCCCCCCCCCeEEEEEEEecCc-CCCccccCCCCCCCCCCCCCCcccccceEE
Q 027195 105 AFNILRYKIG----Q--KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENGMNADGSYDYQKCIGLKV 177 (226)
Q Consensus 105 ~~qv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v 177 (226)
-+++.+|.+- . .-.+|+|.. .+|+|+ .|. ..||-=++.. ...+.|
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~GLQV~~~--------------g~Wi~V 263 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVGLQILKD--------------NTWVPV 263 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCCeeeeeC--------------CEEEeC
Confidence 4678888752 1 145777763 578874 443 4556434321 157899
Q ss_pred eeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 178 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 178 ~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
.|..|.+||--- ...+|. =..++|++.......||.+..+++-
T Consensus 264 ~p~pgalVVNiGD~L~~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~P 310 (361)
T PLN02758 264 HPVPNALVINIGDTLEVLTNGK-YKSVEHRAVTNKEKDRLSIVTFYAP 310 (361)
T ss_pred CCCCCeEEEEccchhhhhcCCe-eecccceeecCCCCCEEEEEEEecC
Confidence 999998887531 112222 2478999975444579998887653
No 51
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=82.43 E-value=0.88 Score=36.77 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=33.2
Q ss_pred CeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCcc
Q 027195 135 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK 209 (226)
Q Consensus 135 ~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~ 209 (226)
.-++..+|--+++ +||+|........ ......--..|+.+++. |.+.+|.+.||..
T Consensus 124 d~v~~~li~r~Ni-~GG~s~i~~~~~~----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 124 DFVFIHLINRHNI-EGGESQIYDNDKE----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp SEEEEEEEEEESE-EE--EEEEETTSS----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred CEEEEEEEcCCCc-cCceEEEEeCCCC----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 3567777777677 7888877543211 12344555678888885 6899999999984
No 52
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=82.06 E-value=1.1 Score=36.83 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=29.0
Q ss_pred ceEEeeeeccEEEEeecCCCCCCCCCCcccCCCC--ccceEEEEEec
Q 027195 174 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPV--VKGEKWVATKW 218 (226)
Q Consensus 174 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV--~~G~K~i~~~W 218 (226)
.+.+.-++|++|||.| .+++|+..+. ..|.|+..+.|
T Consensus 220 ~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 220 TYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp EEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred cccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 4677888999999998 6999999998 56899999988
No 53
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=81.68 E-value=7.8 Score=33.51 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=52.2
Q ss_pred ceEEecCCC----Cc--cccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEee
Q 027195 106 FNILRYKIG----QK--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 179 (226)
Q Consensus 106 ~qv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P 179 (226)
+++++|.+- .. ..+|+|.. .+|+| +.+...|| +.... . ...+.|.|
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL--~q~~~v~G-LqV~~-~------------g~Wi~V~p 206 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILL--LQDDQVPG-LEFLK-D------------GKWVPIPP 206 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEE--EecCCCCc-eEecc-C------------CeEEECCC
Confidence 789999752 11 45788763 46766 34333345 33322 1 15788999
Q ss_pred eec-cEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 180 RQG-DGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 180 ~~G-~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
..| ..||--- ...+|. =..++|++.....+.||.+..+++-.
T Consensus 207 ~p~~~lvVNvGD~L~~~Tng~-~~S~~HRVv~~~~~~R~Si~~F~~p~ 253 (303)
T PLN02403 207 SKNNTIFVNTGDQLEVLSNGR-YKSTLHRVMADKNGSRLSIATFYNPA 253 (303)
T ss_pred CCCCEEEEEehHHHHHHhCCe-eecccceeecCCCCCEEEEEEEEcCC
Confidence 986 4444210 112222 24788999766667899998887654
No 54
>PLN02947 oxidoreductase
Probab=81.60 E-value=13 Score=33.29 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=53.6
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+.. ...+|+|.. .+|+|+- ++ .||-=+... + ..+.|+
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~--g------------~Wi~V~ 276 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEGLQIMHA--G------------RWVTVE 276 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCCeeEeEC--C------------EEEeCC
Confidence 46778887741 245677753 5888855 33 355444431 1 578999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEecccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 221 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~ 221 (226)
|..|.+||--- ...+|.. ..++|++.......||.+..++.-
T Consensus 277 p~pga~VVNvGD~Lq~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~P 322 (374)
T PLN02947 277 PIPGSFVVNVGDHLEIFSNGRY-KSVLHRVRVNSTKPRISVASLHSL 322 (374)
T ss_pred CCCCeEEEEeCceeeeeeCCEE-eccccccccCCCCCEEEEEEEecC
Confidence 99988777421 1123322 478999954445679988877653
No 55
>PLN02997 flavonol synthase
Probab=80.57 E-value=6.1 Score=34.54 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=54.7
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+-. ...+|+|.. .+|+|+. |. .||-=+... ...+.|+
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d~-v~GLQV~~~--------------g~Wi~V~ 234 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--NE-VPGLQAFKD--------------EQWLDLN 234 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--CC-CCCEEEeEC--------------CcEEECC
Confidence 47889997631 256777763 5788843 32 455444422 1578999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|.+|.+||--- ...+|. =..++|++..-....||.+..+++-.
T Consensus 235 p~pgalvVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~fF~~P~ 281 (325)
T PLN02997 235 YINSAVVVIIGDQLMRMTNGR-FKNVLHRAKTDKERLRISWPVFVAPR 281 (325)
T ss_pred CCCCeEEEEechHHHHHhCCc-cccccceeeCCCCCCEEEEEEEecCC
Confidence 99998887531 112232 24689999754445799888776644
No 56
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=79.92 E-value=8.2 Score=34.24 Aligned_cols=89 Identities=15% Similarity=0.049 Sum_probs=53.1
Q ss_pred cceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
-+++.+|.+-. .-.+|+|.. .+|+|+- +...||-=+... ...+.|.
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~GLQV~~~--------------g~W~~V~ 265 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAGLQVRRD--------------DAWITVK 265 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCcceeeEC--------------CEEEECC
Confidence 47788886521 255777763 4677633 333355434321 1478999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|. =..++|++..-...+||.+..+++-.
T Consensus 266 p~pgalVVNiGD~l~~~Tng~-~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 266 PVPDAFIVNIGDQIQVLSNAI-YKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccceecccCCCCCEEEEEEEecCC
Confidence 99998887421 011221 14689999544445799998887654
No 57
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=78.51 E-value=25 Score=30.83 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.6
Q ss_pred cceEEecCCCC------c--cccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceE
Q 027195 105 AFNILRYKIGQ------K--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLK 176 (226)
Q Consensus 105 ~~qv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~ 176 (226)
.+++++|.+.. . -.+|+|.. .+|+|+- |. .||-=+.... ...+.
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d~-v~GLQV~~~~-------------g~Wi~ 230 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS--ND-TAGLQICVKD-------------GTWVD 230 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe--CC-CCceEEEeCC-------------CCEEE
Confidence 58899997632 1 34677753 5788744 32 3553333221 15799
Q ss_pred EeeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 177 VKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 177 v~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|.|..|.+||--- ...+|.. ..+.|++......+||.+..+++-.
T Consensus 231 Vpp~pga~VVNiGD~l~~wTNg~~-kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 231 VPPDHSSFFVLVGDTLQVMTNGRF-KSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred ccCCCCcEEEEhHHHHHHHhCCee-eccceeeecCCCCCEEEEEEeecCC
Confidence 9999999888431 1122222 5789999866666899998877543
No 58
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=77.76 E-value=15 Score=31.84 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCCcceEEecCC------CCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccce
Q 027195 102 NGEAFNILRYKI------GQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGL 175 (226)
Q Consensus 102 ~~E~~qv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~ 175 (226)
.++.++++||.. ++.-+.|.|+. .+|+| +.|. .||--+.+... ..+
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd~-~~GLqv~~~~g-------------~Wl 223 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQDD-VGGLEVRPPNG-------------GWL 223 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEE--Eecc-cCCeEEecCCC-------------Cee
Confidence 456799999984 34457888874 35555 4443 56666665432 579
Q ss_pred EEeeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 176 KVKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 176 ~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
.|.|..|..||..- ...+|. =..+.|.++--..=+||.+--++.-+
T Consensus 224 ~v~P~pgtlvVNiGdmLe~~Tng~-lrST~HRV~~~~~~~R~SipfF~~p~ 273 (322)
T COG3491 224 DVPPIPGTLVVNIGDMLERWTNGR-LRSTVHRVRNPPGVDRYSIPFFLEPN 273 (322)
T ss_pred ECCCCCCeEEEeHHHHHHHHhCCe-eccccceeecCCCccceeeeeeccCC
Confidence 99999999999752 111222 25789999877643888887776543
No 59
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=77.42 E-value=3 Score=34.93 Aligned_cols=40 Identities=28% Similarity=0.568 Sum_probs=33.6
Q ss_pred ceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCcc---ceEEEEEecccc
Q 027195 174 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK---GEKWVATKWIRD 221 (226)
Q Consensus 174 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~---G~K~i~~~W~~~ 221 (226)
.+.++-++|++|+|.| .+++|+-.+-.. +.||..+.|+..
T Consensus 219 ~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~~ 261 (262)
T cd00250 219 QLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVDR 261 (262)
T ss_pred EEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEecC
Confidence 4678888999999998 699999988764 579999999853
No 60
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=76.39 E-value=0.46 Score=42.95 Aligned_cols=70 Identities=29% Similarity=0.329 Sum_probs=54.6
Q ss_pred CCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEE
Q 027195 134 SQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKW 213 (226)
Q Consensus 134 ~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~ 213 (226)
+-+......|+||+++||+..|...+... ....++|+-|+.+-|.+- ..-.|...+|++|..-
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t----------~~a~~k~~~~re~~~~~g-------~e~~~~~~~~~kg~e~ 426 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKT----------YTAISKPECGRECAFSSG-------AENPHGVKAVTKGLEC 426 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccc----------hhhccccccccchhhhcc-------ccCccchhhhhhhhHH
Confidence 34577889999999999999998654322 357799999999999752 3557899999999877
Q ss_pred EEEeccc
Q 027195 214 VATKWIR 220 (226)
Q Consensus 214 i~~~W~~ 220 (226)
.+..|..
T Consensus 427 ~~~lw~~ 433 (471)
T KOG4459|consen 427 AVALWPT 433 (471)
T ss_pred hhhcCcc
Confidence 7777754
No 61
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=76.22 E-value=3.5 Score=34.27 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=51.2
Q ss_pred ccEEEecCCCCHHHHHHHHHHhhcC-CccceEeccC---Cc-eeccCCCeEeeceeecCCCCCchhHHHHHHHHHHHHcC
Q 027195 23 PRALYFPNFATPEQCKSIINMAKLN-LRPSTLALRK---GE-TVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTM 97 (226)
Q Consensus 23 P~i~~~~~fLs~~Ec~~li~~a~~~-l~~s~v~~~~---g~-~~~~~~~~R~s~~~~l~~~~~~~~~~~~i~~ri~~~~~ 97 (226)
|.|.+++||||.+|-..|++..+.. +..|.-.-++ |- ..-..+..|+. .|..-. ...+.+.+|+..+-+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~--~F~G~P----~~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTD--TFVGMP----EYADMVLRRMSEYPV 145 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccC--cccCCc----hHHHHHHHHhhccch
Confidence 7899999999999999999998752 2222111000 10 00011223332 233221 356777777776432
Q ss_pred CCCCCCCcce--EEecCC--CCccccCcCCCC
Q 027195 98 LPRINGEAFN--ILRYKI--GQKYNSHYDAFD 125 (226)
Q Consensus 98 ~~~~~~E~~q--v~rY~~--G~~y~~H~D~~~ 125 (226)
+.- .-++. =+-|.+ |.--.||.|...
T Consensus 146 l~g--fqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 146 LKG--FQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hhc--cCcHHHcCcccccccCCccCccccchh
Confidence 211 11111 133664 788999999653
No 62
>PLN02704 flavonol synthase
Probab=75.87 E-value=8.1 Score=33.85 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=53.1
Q ss_pred ceEEecCCCC------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEee
Q 027195 106 FNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 179 (226)
Q Consensus 106 ~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P 179 (226)
+++.+|.+.. ...+|+|.. .+|+|+- |. .||-=+... ...+.|+|
T Consensus 201 lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~GLQV~~~--------------g~Wi~V~p 251 (335)
T PLN02704 201 LKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQGLQVFRD--------------DHWFDVKY 251 (335)
T ss_pred hhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCceeEeEC--------------CEEEeCCC
Confidence 6777887621 245777763 4777744 33 445333321 15789999
Q ss_pred eeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 180 RQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 180 ~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
..|.+||--- ...+|. =..++|++.......||.+..+++-.
T Consensus 252 ~pg~lvVNvGD~L~~~TNg~-~kSt~HRVv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 252 IPNALVIHIGDQIEILSNGK-YKSVLHRTTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred CCCeEEEEechHHHHHhCCe-eecccceeecCCCCCeEEEEEEecCC
Confidence 9998877431 011221 24789999654456799998887654
No 63
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=72.77 E-value=13 Score=32.87 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=53.2
Q ss_pred cceEEecCCC----C--ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe
Q 027195 105 AFNILRYKIG----Q--KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 178 (226)
Q Consensus 105 ~~qv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~ 178 (226)
.+++.+|.+- . ...+|+|.. .+|+|+. | ..||-=+... ...+.|+
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~--------------g~Wi~V~ 262 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLYE--------------GKWVTAK 262 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeEC--------------CEEEEcC
Confidence 4678889752 1 245788763 4788843 3 2345333321 1579999
Q ss_pred eeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 179 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 179 P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
|..|.+||--- ...+|. =..++|++..-....||.+..+++-.
T Consensus 263 p~pg~lvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 263 CVPDSIVVHIGDTLEILSNGR-YKSILHRGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred CCCCeEEEEccHHHHHHhCCc-cccccceeecCCCCCeEEEEEEecCC
Confidence 99998887421 011222 24789997533345799998887654
No 64
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.15 E-value=16 Score=31.49 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=54.2
Q ss_pred ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcC-CCccccC-CCCCCCC--CCCC--CCcccccceEEeeeeccEEEEee
Q 027195 116 KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE-EGGETMF-PFENGMN--ADGS--YDYQKCIGLKVKPRQGDGLLFYS 189 (226)
Q Consensus 116 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GG~T~F-p~~~~~~--~~~~--~~~~~~~~~~v~P~~G~al~f~n 189 (226)
.=.+|.|..... ....-+..+.+=|-|.. +-|.|.+ |..-... .... ..|.+...+-|.-.+|+||+|.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 467899954332 23445778888888874 5577765 4322111 0000 1233344677888999999996
Q ss_pred cCCCCCCCCCCcccCCCCccceEEE
Q 027195 190 LLPNGTIDPTSIHGSCPVVKGEKWV 214 (226)
Q Consensus 190 ~~~~g~~d~~~~H~g~PV~~G~K~i 214 (226)
..++|++.--+.+.+-.
T Consensus 207 --------~~L~HaA~aNrT~~~R~ 223 (299)
T COG5285 207 --------GSLWHAAGANRTSADRV 223 (299)
T ss_pred --------chhhhhhhcCCCCcccc
Confidence 58999998888774433
No 65
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=59.10 E-value=36 Score=29.76 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=53.9
Q ss_pred cceEEecCCCC-------ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEE
Q 027195 105 AFNILRYKIGQ-------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 177 (226)
Q Consensus 105 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v 177 (226)
.+++++|.+.. ...+|+|.. .+|+|+ .|. .||-=+...... .+...+.|
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~-v~GLQV~~~~~~---------~~g~Wi~V 238 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLA--TDG-VMGLQICKDKNA---------MPQKWEYV 238 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEe--eCC-CCceEEecCCCC---------CCCcEEEC
Confidence 47899997631 145777763 588884 342 456444432100 00147889
Q ss_pred eeeeccEEEEee----cCCCCCCCCCCcccCCCCccceEEEEEeccccc
Q 027195 178 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 222 (226)
Q Consensus 178 ~P~~G~al~f~n----~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~ 222 (226)
.|..|..||--- ...+|.. ..++|++..- ...||.+..+++-.
T Consensus 239 pp~pg~~VVNiGD~L~~wTng~~-kSt~HRVv~~-~~~R~Sia~F~~p~ 285 (332)
T PLN03002 239 PPIKGAFIVNLGDMLERWSNGFF-KSTLHRVLGN-GQERYSIPFFVEPN 285 (332)
T ss_pred CCCCCeEEEEHHHHHHHHhCCee-ECcCCeecCC-CCCeeEEEEEecCC
Confidence 999999887421 1112221 4788998533 45799888877643
No 66
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=58.35 E-value=15 Score=26.22 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=33.3
Q ss_pred EEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 139 SFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 139 T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
+.+.-++|..+|+...|... ..+.|.-..|....|.| .+.|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~--------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS--------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC--------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34566778878877666531 12445556788777776 899999998654
No 67
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=57.51 E-value=14 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred EEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 141 LVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 141 liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
+.-++|...|+...|.... ..+.|.-..|....|.| .+.|.++|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 3445566566655554321 24555555677777776 899999998765
No 68
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=52.79 E-value=10 Score=32.12 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.2
Q ss_pred ccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCC
Q 027195 118 NSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFP 156 (226)
Q Consensus 118 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp 156 (226)
.||+|..... ..-.+++|.-+.-+.+||+|.|-
T Consensus 95 ~wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~fa 127 (277)
T PRK09553 95 NWHTDVTFIE------TPPLGAILAAKQLPSTGGDTLWA 127 (277)
T ss_pred CCeecccCee------CCCceeEEEEEecCCCCCccHhh
Confidence 4999987642 22347777777777899999994
No 69
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=52.44 E-value=11 Score=33.80 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccce
Q 027195 132 QKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 211 (226)
Q Consensus 132 ~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~ 211 (226)
....|-.|+.+||.+.++||+..|-......-....+. ..-+...=..|-+++..+ ++.|...+-+.|.
T Consensus 278 ~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~--~EiFdn~h~p~qa~LHrg---------~~~~~a~~~~~~~ 346 (415)
T KOG1971|consen 278 CVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDL--WEIFDNSHDPGQAYLHRG---------YHKHGARATIVGQ 346 (415)
T ss_pred ccchhhcceeEEecccccCCeeEeeccccccccCCCch--hhhccCcCCCccceecCc---------chhccccccCCCC
Confidence 34678999999999999999999976432110000000 011223334577788776 5667766666676
Q ss_pred EEEEEecccc
Q 027195 212 KWVATKWIRD 221 (226)
Q Consensus 212 K~i~~~W~~~ 221 (226)
.+.-..|+..
T Consensus 347 ~~~nv~~~~~ 356 (415)
T KOG1971|consen 347 PCPNVYWFPI 356 (415)
T ss_pred CCCceeeehh
Confidence 6666677643
No 70
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=48.82 E-value=22 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 175 LKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 175 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
+.++...|....|.| .+.|.++|+..|
T Consensus 26 ~~~~~~~g~~~A~~n---------~CpH~g~~L~~g 52 (108)
T cd03474 26 LLVAPEGGEFRAFQG---------ICPHQEIPLAEG 52 (108)
T ss_pred EEEEccCCeEEEEcC---------cCCCCCCCcccC
Confidence 455666777777766 789999998866
No 71
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=46.48 E-value=29 Score=24.14 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=18.4
Q ss_pred EeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 177 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 177 v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
++...|....|.| ...|.++|+..|
T Consensus 28 ~r~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 28 FRTADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred EEeCCCCEEEEcC---------cCCCCCCCccCC
Confidence 3334577777765 899999998876
No 72
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=45.58 E-value=23 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.3
Q ss_pred ceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 174 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 174 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
.+.++=++|++|+|.| .+++|+...-. |.||..-.++-
T Consensus 312 ~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d 349 (362)
T TIGR02410 312 EIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLT 349 (362)
T ss_pred EEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEc
Confidence 3567788899999999 69999999875 88888777654
No 73
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=41.81 E-value=28 Score=30.76 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=30.9
Q ss_pred eEEeeeeccEEEEeecCCCCCCCCCCcccCCCCc--cceEEEEEeccc
Q 027195 175 LKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVV--KGEKWVATKWIR 220 (226)
Q Consensus 175 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~--~G~K~i~~~W~~ 220 (226)
+..+=++|++|+|.| .+++|+...-. .|.|+..-.++.
T Consensus 314 ~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d 353 (366)
T TIGR02409 314 FTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYAD 353 (366)
T ss_pred EEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEc
Confidence 566778999999998 69999998875 578888776654
No 74
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=40.36 E-value=27 Score=24.09 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred ceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccce
Q 027195 174 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 211 (226)
Q Consensus 174 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~ 211 (226)
.+.+.-..|....|.| .+.|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 4566677788888876 8999999999884
No 75
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=40.34 E-value=35 Score=25.61 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=38.3
Q ss_pred CeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEE-eeeeccEEEEeecCCCCCCCCCCcccCCCCccce
Q 027195 135 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV-KPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 211 (226)
Q Consensus 135 ~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v-~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~ 211 (226)
.+.+..+..+.+..+|+...|.... ..+.| +-..|.+-.|.| .+.|.|.|+..|.
T Consensus 15 ~~~W~~v~~~~el~~~~~~~~~v~g-------------~~ivl~r~~~G~v~A~~n---------~CpHrga~L~~G~ 70 (134)
T cd04338 15 REEWYPLYLLKDVPTDAPLGLSVYD-------------EPFVLFRDQNGQLRCLED---------RCPHRLAKLSEGQ 70 (134)
T ss_pred ccCcEEEEEHHHCCCCCCEEEEECC-------------ceEEEEEcCCCCEEEEcC---------cCCCCcCcccCCe
Confidence 4567788889998888866554311 23333 345788888876 8999999998874
No 76
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=38.30 E-value=30 Score=25.58 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=31.7
Q ss_pred EEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 140 FLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 140 ~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
.+.-+++..++|....-...+. .-+-++...|..-.|.| .+.|++.++..|
T Consensus 3 ~v~~~~elp~~g~~~~~~~~~~-----------~i~l~r~~~g~v~A~~n---------~C~Hrg~~L~~g 53 (123)
T cd03542 3 YLAHESQIPNNNDYFTTTIGRQ-----------PVVITRDKDGELNAFIN---------ACSHRGAMLCRR 53 (123)
T ss_pred EeEEHHHCCCCCCEEEEEECCc-----------EEEEEECCCCCEEEEcc---------cCcCCCCccccc
Confidence 3455677777665433221110 12445556788888887 789999999765
No 77
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=37.72 E-value=34 Score=30.30 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=26.3
Q ss_pred ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCC
Q 027195 116 KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFE 158 (226)
Q Consensus 116 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~ 158 (226)
...+|+|..... ..-.+++|.-+....+||+|.|-+.
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d~ 222 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVDG 222 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeeeH
Confidence 456999986532 2224677777887889999999753
No 78
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=37.39 E-value=93 Score=24.11 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=44.2
Q ss_pred CcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeecc
Q 027195 104 EAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGD 183 (226)
Q Consensus 104 E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~ 183 (226)
....+.+-.+|....+|.|.... .+++.+=|..+ .+|....- .+..+.=+.|.
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~----------~lR~Hl~L~~p-~~~~~~~v----------------~~~~~~w~~G~ 132 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNL----------RLRLHLPLIVP-NPGCYIRV----------------GGETRHWREGE 132 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TT----------EEEEEEEEC---STTEEEEE----------------TTEEEB--CTE
T ss_pred hhEEEEEECCCCEECCeeCCCCc----------ceEEEEEEEcC-CCCeEEEE----------------CCeEEEeccCc
Confidence 34678888999999999997531 26666666654 22222111 34566668899
Q ss_pred EEEEeecCCCCCCCCCCcccCCCCccceEEEE
Q 027195 184 GLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVA 215 (226)
Q Consensus 184 al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~ 215 (226)
+++|.+ ...|++---....|.++
T Consensus 133 ~~~fD~---------s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 133 CWVFDD---------SFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEE-T---------TS-EEEEESSSS-EEEE
T ss_pred EEEEeC---------CEEEEEEeCCCCCEEEE
Confidence 999964 77888766555566655
No 79
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=36.35 E-value=43 Score=24.93 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=37.9
Q ss_pred CeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 135 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 135 ~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
.+.+..+..+++..+|.-+.|.-... .-+-++...|++-.|.| .+.|.|+|+..|
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~v~g~------------~l~l~r~~~g~v~A~~n---------~CpH~g~~L~~G 69 (129)
T cd04337 15 RNFWYPVEFSKDLKMDTMVPFELFGQ------------PWVLFRDEDGTPGCIRD---------ECAHRACPLSLG 69 (129)
T ss_pred hCccEEEEEHHHCCCCCeEEEEECCc------------EEEEEECCCCcEEEEeC---------cCCCCcCCcccC
Confidence 35567777788888777666643210 12345556788888876 899999999877
No 80
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=36.14 E-value=29 Score=25.52 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 138 ASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 138 ~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
+..+.-+++..++|...+....+ ..-+-++-..|..-.|.| .+.|.+.|+..|
T Consensus 3 w~~v~~~~el~~~g~~~~~~~~~-----------~~iiv~r~~~g~~~A~~n---------~CpHrg~~L~~g 55 (123)
T cd03535 3 WVFLGHESEIPNAGDYVVRYIGD-----------DSFIVCRDEDGEIRAMFN---------SCRHRGMQVCRA 55 (123)
T ss_pred CEEEEEHHHCCCCCCEEEEEECC-----------eEEEEEECCCCCEEEEcc---------cCccCCCEeecc
Confidence 34445566776666554432111 012334445777777776 789999998765
No 81
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=35.46 E-value=43 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=17.9
Q ss_pred EEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 176 KVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 176 ~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
.|.-..|....|.| .+.|.++|+..|
T Consensus 25 ~v~r~~g~~~A~~~---------~CpH~g~~L~~g 50 (95)
T cd03478 25 LLVRQGGEVHAIGA---------KCPHYGAPLAKG 50 (95)
T ss_pred EEEEECCEEEEEcC---------cCcCCCCccCCC
Confidence 33334666666665 899999998765
No 82
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=34.71 E-value=49 Score=27.51 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=26.9
Q ss_pred CccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCC
Q 027195 115 QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPF 157 (226)
Q Consensus 115 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~ 157 (226)
....+|+|..... ..--+.+|.-|....+||+|.|-+
T Consensus 94 ~~l~~HtD~~y~~------~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHE------YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCC------CCCceEEEEEeccCCCCCcceeee
Confidence 5567999987542 122466777788888999999976
No 83
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=33.84 E-value=71 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred cEEEecCCCCHHHHHHHHHHhh
Q 027195 24 RALYFPNFATPEQCKSIINMAK 45 (226)
Q Consensus 24 ~i~~~~~fLs~~Ec~~li~~a~ 45 (226)
.++.+..||+++|.+.|.+...
T Consensus 62 pvi~i~~~l~~~d~~~i~~~i~ 83 (85)
T cd05568 62 PVIVVSPILTEEDIKKIRKFIK 83 (85)
T ss_pred CEEEECCCCCHHHHHHHHHHHh
Confidence 5889999999999999988764
No 84
>PRK02963 carbon starvation induced protein; Validated
Probab=32.86 E-value=48 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=25.8
Q ss_pred eEEeeeeccEEEEeecCCCCCCCCCCcccCCCCc---cceEEEE
Q 027195 175 LKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVV---KGEKWVA 215 (226)
Q Consensus 175 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~---~G~K~i~ 215 (226)
+.++-+.|++|+|.| ++.+|+=..-. .|.|+.+
T Consensus 267 ~~fkL~pGd~vvfDN--------~RVLHGR~aF~~~~g~~R~L~ 302 (316)
T PRK02963 267 LSVPVPVGKFLLINN--------LFWLHGRDRFTPHPDLRRELM 302 (316)
T ss_pred EEEecCCceEEEEeC--------eEEeeCCCCcCCCCCCceEEE
Confidence 577888999999998 79999988764 2455553
No 85
>PLN00139 hypothetical protein; Provisional
Probab=32.51 E-value=52 Score=28.71 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=25.7
Q ss_pred CccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCC
Q 027195 115 QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPF 157 (226)
Q Consensus 115 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~ 157 (226)
....+|+|...... .-..++|.-+.-+.+||+|.|-+
T Consensus 111 ~~i~~H~E~sy~~~------pP~~~~f~C~~~p~~GGeT~~aD 147 (320)
T PLN00139 111 EFIYYHHEMVLIKE------SPKKVILFCEIPPPEGGQTPFVP 147 (320)
T ss_pred ccccccccccCccC------CCceEEEEecccCCCCCCCeeec
Confidence 34679999876432 22456666677778999999864
No 86
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=31.99 E-value=67 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=16.4
Q ss_pred eeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 180 RQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 180 ~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
..|....|.| .+.|.++|+..|
T Consensus 32 ~~g~~~A~~~---------~CpH~g~~L~~G 53 (101)
T TIGR02377 32 PDDQYYATDG---------LCTHEYAHLADG 53 (101)
T ss_pred CCCEEEEEcC---------cCCCCCCCCCCC
Confidence 3566666654 899999998766
No 87
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.60 E-value=3.6e+02 Score=23.69 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcC--CCccccCCCCCCC
Q 027195 84 TLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE--EGGETMFPFENGM 161 (226)
Q Consensus 84 ~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~--~GG~T~Fp~~~~~ 161 (226)
+.+.|.+|+-..--+|. .-+.+-+..|++|+.-.+|+|... ..+.+.| +.+|+++. =|=....-....
T Consensus 191 ~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~Pi~s-lS~lSe~~m~Fg~~~~~~~~~~- 260 (323)
T KOG4176|consen 191 LFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDPISS-LSFLSECTMEFGHGLLSDNIGN- 260 (323)
T ss_pred HHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCceEE-EEeecceeEEecccccccCccc-
Confidence 55666666655555665 456788999999999999996532 2333444 44577652 111111111000
Q ss_pred CCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccc
Q 027195 162 NADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220 (226)
Q Consensus 162 ~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~ 220 (226)
+. ...++.-+.|.+++-.+- .-....|+++|+. .|+|.-.+.+
T Consensus 261 -------~~--g~~s~p~~~g~~lvi~~~-----~ad~~~~~~~~~~--~kRisitfrk 303 (323)
T KOG4176|consen 261 -------FR--GSLSLPLRYGSVLVIRGR-----SADVAPHCIRPSR--NKRISITFRK 303 (323)
T ss_pred -------cc--cccccccccCeEEEeCCC-----cccccccccCCCC--CceEEEEEEE
Confidence 00 126667777888877642 1235678888843 3555544443
No 88
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=31.10 E-value=40 Score=25.11 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=34.2
Q ss_pred eEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccc-eEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 136 RVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIG-LKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 136 R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~-~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
+.+..+..+++..++|........+ .. +-++...|..-.|.| .+.|.++|+..|
T Consensus 7 ~~W~~v~~~~el~~~g~~~~~~~~~------------~~i~l~r~~~g~i~A~~n---------~C~Hrg~~L~~g 61 (128)
T cd03472 7 RSWLLLGHETHIPKAGDYLTTYMGE------------DPVIVVRQKDGSIRVFLN---------QCRHRGMRICRS 61 (128)
T ss_pred CCCeEeEEHHHCCCCCCEEEEEECC------------ceEEEEECCCCCEEEEhh---------hCcCCCCeeecc
Confidence 3456667788877666532111110 12 345667888888877 799999999865
No 89
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=30.67 E-value=23 Score=24.31 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.8
Q ss_pred ecCCCCHHHHHHHHH
Q 027195 28 FPNFATPEQCKSIIN 42 (226)
Q Consensus 28 ~~~fLs~~Ec~~li~ 42 (226)
-++|||.+||+.|..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999865
No 90
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=30.29 E-value=52 Score=24.17 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=18.8
Q ss_pred EeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 177 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 177 v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
++-..|..-.|.| .+.|.+.|+..|
T Consensus 29 ~r~~~g~v~A~~n---------~CpH~g~~L~~~ 53 (123)
T cd03536 29 ARDKDGEIHVSLN---------VCPHRGMRISTT 53 (123)
T ss_pred EECCCCCEEEEee---------eCCCCCCCcccc
Confidence 4556788888887 788888888643
No 91
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=27.92 E-value=54 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=18.2
Q ss_pred EeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 177 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 177 v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
++...|....|.| ...|.++++..|
T Consensus 26 ~r~~~g~~~A~~~---------~CpH~g~~l~~g 50 (91)
T cd03477 26 YRDEDGVLHTVSA---------TCTHLGCIVHWN 50 (91)
T ss_pred EECCCCCEEEEcC---------cCCCCCCCCccc
Confidence 3445777777765 789999988765
No 92
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=27.91 E-value=87 Score=23.54 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=42.1
Q ss_pred CeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEe-ee-eccEEEEeecCCCCCCCCCCcccCCCCccceE
Q 027195 135 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK-PR-QGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEK 212 (226)
Q Consensus 135 ~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~-P~-~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K 212 (226)
.+.+..+..++++..|+-+.|-... ..+.|. -. .|..-.|.| .+.|.+.|+..|..
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~~~g-------------~~i~v~r~~~dG~~~A~~n---------~CpHrga~L~~G~~ 72 (138)
T cd03480 15 REVWYPVAYVEDLDPSRPTPFTLLG-------------RDLVIWWDRNSQQWRAFDD---------QCPHRLAPLSEGRI 72 (138)
T ss_pred ccceEEEEEHHHCCCCCcEEEEECC-------------eeEEEEEECCCCEEEEEcC---------CCcCCcCccccceE
Confidence 3556777888888887655554321 233333 33 788888877 89999999998842
Q ss_pred ---EEEEecccc
Q 027195 213 ---WVATKWIRD 221 (226)
Q Consensus 213 ---~i~~~W~~~ 221 (226)
=.++..+|.
T Consensus 73 ~~~~~i~CP~Hg 84 (138)
T cd03480 73 DEEGCLECPYHG 84 (138)
T ss_pred cCCCEEEeCCCC
Confidence 245555543
No 93
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.82 E-value=73 Score=26.94 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=29.3
Q ss_pred cceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccc-eEEEEEeccc
Q 027195 173 IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG-EKWVATKWIR 220 (226)
Q Consensus 173 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G-~K~i~~~W~~ 220 (226)
..++.+=+.|++|+|.| .+++|.+..-..+ .|..-+..+.
T Consensus 232 ~~~~~~w~~GD~viwDN--------r~~~H~a~~~~~~~~R~~~R~~v~ 272 (277)
T PRK09553 232 FQVRWRWQPNDVAIWDN--------RVTQHYANADYLPQRRIMHRATIL 272 (277)
T ss_pred eEEEEecCCCCEEEEcC--------cceeEecccCCCCCceEEEEEeec
Confidence 34678888999999998 6999999765533 5555555554
No 94
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=27.64 E-value=31 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=18.3
Q ss_pred ceEEe-eeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEecc
Q 027195 174 GLKVK-PRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWI 219 (226)
Q Consensus 174 ~~~v~-P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~ 219 (226)
-+.|. -++|+.|+|+ ..+.|++.++..|..+..+.++
T Consensus 318 mv~iP~v~PGD~V~WH---------cD~iH~Vd~~h~g~~~ssV~Yi 355 (416)
T PF07350_consen 318 MVSIPDVEPGDYVFWH---------CDLIHAVDPEHNGKGDSSVMYI 355 (416)
T ss_dssp -EE---B-TT-EEEEE---------TT--EEE--BSS-SS---EEE-
T ss_pred cccCCCCCCCCeEEEe---------CCccccccccCCCCCCCCeeEe
Confidence 35565 4689999997 4899999999998877665554
No 95
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=27.50 E-value=67 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=31.3
Q ss_pred ccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCc-cceEEEEEecccccc
Q 027195 170 QKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVV-KGEKWVATKWIRDQE 223 (226)
Q Consensus 170 ~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~-~G~K~i~~~W~~~~~ 223 (226)
.++....+.-.+|++|+.+. ..+|.+.-.. .+.-..+|.|++..+
T Consensus 204 ~~~~~~~~~l~pGD~LfiP~---------gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 204 RKAPPYEVVLEPGDVLFIPP---------GWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp GG--EEEEEEETT-EEEE-T---------T-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ccCceeEEEECCCeEEEECC---------CCeEEEEEcCCCCeEEEEEEEecccc
Confidence 34456888999999999995 8999998873 344788999998754
No 96
>PHA02577 2 DNA end protector protein; Provisional
Probab=27.49 E-value=11 Score=29.65 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=35.3
Q ss_pred cceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCC
Q 027195 105 AFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPF 157 (226)
Q Consensus 105 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~ 157 (226)
..|++|+.+|--|..-+|.-.-+... -==.+-+++|||.....|.|.|..
T Consensus 34 ~h~v~kp~~Grly~F~YdAk~KdtLp---ywDrfPLI~flg~~~~~g~~l~~G 83 (181)
T PHA02577 34 GHQVVKPQPGRLYTFEYDAKHKDTLP---YWDRFPLIIFLGSGQSKAHTLMYG 83 (181)
T ss_pred ccccccCcCceEEEEEecccccCccc---ccccCcEEEEEecCCCCCcceEee
Confidence 45899999998887777765432211 111457899999988778898886
No 97
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=26.82 E-value=42 Score=27.38 Aligned_cols=37 Identities=30% Similarity=0.146 Sum_probs=24.3
Q ss_pred ccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCC
Q 027195 116 KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFE 158 (226)
Q Consensus 116 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~ 158 (226)
...+|+|..... ..--+.+|..+.....||+|.|-+.
T Consensus 96 ~l~~HtD~~~~~------~~p~~~~L~c~~~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 96 ELPWHTDGSYWP------YPPDYLALYCLRPAEEGGETTFADA 132 (258)
T ss_dssp GEEEE-TTTTST------TEESEEEEEEEEEESSSSEEEEEEH
T ss_pred ccccccccCccc------CCcceeEEEeeccCCCCCccccccH
Confidence 478999987532 2223556666666679999999653
No 98
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=26.79 E-value=1.1e+02 Score=21.96 Aligned_cols=43 Identities=28% Similarity=0.521 Sum_probs=25.0
Q ss_pred ceEEeeeeccEEEEeecCCCCCCCCCCccc-CCCCccceEEEEEec
Q 027195 174 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHG-SCPVVKGEKWVATKW 218 (226)
Q Consensus 174 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~-g~PV~~G~K~i~~~W 218 (226)
.++|.|+.| -=|+-++++|.++...-.. ..+-..-..|++-.|
T Consensus 62 ~IkV~P~~G--~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~w 105 (105)
T PF11191_consen 62 MIKVQPKAG--PPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFSW 105 (105)
T ss_pred eEEEEeCCC--CCEEEECCCCCCcccccccccCCCCCCcEEEEeeC
Confidence 589999999 4455566666543222222 222233468888777
No 99
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=26.48 E-value=1.1e+02 Score=21.97 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=10.3
Q ss_pred CCCCcccCCCCccc
Q 027195 197 DPTSIHGSCPVVKG 210 (226)
Q Consensus 197 d~~~~H~g~PV~~G 210 (226)
+-.+.|+++|...|
T Consensus 43 ~n~CpH~~~~l~~g 56 (106)
T COG2146 43 DNRCPHAGAPLSRG 56 (106)
T ss_pred eCcCCCCCCccccc
Confidence 34899999995554
No 100
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=26.05 E-value=1.1e+02 Score=22.92 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=36.6
Q ss_pred CeEEEEEEEecCcCCCccccCCCCCCCCCCCCCCcccccceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccce
Q 027195 135 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 211 (226)
Q Consensus 135 ~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~~~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~ 211 (226)
.+.+..+.-++++.+|.-..|.-.. ..+.|.-..|.+-.|.| .+.|.+.|+..|.
T Consensus 12 ~~~W~~v~~~~el~~g~~~~~~~~g-------------~~i~l~r~~g~v~A~~n---------~CpHrg~~L~~g~ 66 (136)
T cd03548 12 RNHWYPALFSHELEEGEPKGIQLCG-------------EPILLRRVDGKVYALKD---------RCLHRGVPLSKKP 66 (136)
T ss_pred ccCcEEEEEHHHCCCCCeEEEEECC-------------cEEEEEecCCEEEEEeC---------cCcCCCCccccCc
Confidence 3566777778888776544443211 23334337888888887 7999999988764
No 101
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=24.49 E-value=96 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=34.1
Q ss_pred EEEEEEEecCcCC-CccccCCCCCCCCCCCCCCcccccceE-EeeeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 137 VASFLVYLTDLEE-GGETMFPFENGMNADGSYDYQKCIGLK-VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 137 ~~T~liYLnd~~~-GG~T~Fp~~~~~~~~~~~~~~~~~~~~-v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
.+..+..+++..+ |..+.|.... ..+. ++-..|.+..|.| .+.|.|+++..|
T Consensus 21 ~W~~v~~~~eL~~~g~~~~~~~~g-------------~~i~v~r~~~G~v~A~~n---------~CpHrG~~L~~G 74 (144)
T cd03479 21 YWQPVALSSELTEDGQPVRVRLLG-------------EDLVAFRDTSGRVGLLDE---------HCPHRGASLVFG 74 (144)
T ss_pred ceEEEEEHHHCCCCCCEEEEEECC-------------cEEEEEEeCCCCEEEEcC---------cCCCCCCcccCC
Confidence 4556677888874 5444443211 2233 4457888888887 899999999876
No 102
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=23.84 E-value=92 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCcceEEecCCCCccc
Q 027195 82 SGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYN 118 (226)
Q Consensus 82 ~~~~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~ 118 (226)
+....+..+||++ .+=||+||..||.--
T Consensus 57 D~~f~~F~~rl~~---------~P~QvlRY~~gG~PL 84 (164)
T PF04194_consen 57 DKAFLKFQKRLSR---------NPEQVLRYCRGGKPL 84 (164)
T ss_pred CHHHHHHHHHHhc---------CCCeEEEECCCCeEE
Confidence 3566777777765 244999999998733
No 103
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=23.38 E-value=99 Score=22.35 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=16.6
Q ss_pred eeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 179 PRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 179 P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
-..|.+..|.| .+.|.++|+..|
T Consensus 31 ~~~g~~~a~~n---------~CpH~ga~L~~G 53 (115)
T cd03531 31 DSDGALNVLDA---------YCRHMGGDLSQG 53 (115)
T ss_pred CCCCCEEEEcC---------cCCCCCCCCccC
Confidence 34667777765 788888888776
No 104
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=22.61 E-value=76 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=24.5
Q ss_pred cccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCC
Q 027195 117 YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPF 157 (226)
Q Consensus 117 y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~ 157 (226)
-.+|+|..... ..--+++|.-|....+||+|.|-+
T Consensus 179 l~~HtD~~y~~------~pp~~~~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 179 IDMHTDGTYWD------ETPGLQLFHCLTHDGTGGETVLVD 213 (362)
T ss_pred ccccccCCCCC------CCCcceeEeeeecCCCCCceeeee
Confidence 34899986542 223466666777778999999976
No 105
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=22.49 E-value=93 Score=22.17 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=17.9
Q ss_pred eeeccEEEEeecCCCCCCCCCCcccCCCCccc
Q 027195 179 PRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 210 (226)
Q Consensus 179 P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G 210 (226)
-..|....|.| .+.|.++|+..|
T Consensus 31 ~~~g~~~a~~n---------~CpH~g~~L~~g 53 (118)
T cd03469 31 DRDGEVRAFHN---------VCPHRGARLCEG 53 (118)
T ss_pred CCCCCEEEEEE---------eCCCCCCEeeec
Confidence 34777777776 789999998865
No 106
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=22.00 E-value=1.5e+02 Score=20.30 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=11.5
Q ss_pred CCCCcccCCCCccc
Q 027195 197 DPTSIHGSCPVVKG 210 (226)
Q Consensus 197 d~~~~H~g~PV~~G 210 (226)
+..+.|.++|+..|
T Consensus 39 ~~~CpH~g~~l~~~ 52 (98)
T cd03467 39 SNRCTHQGCPLSEG 52 (98)
T ss_pred cCcCCCCCccCCcC
Confidence 45889999999876
No 107
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.85 E-value=1.1e+02 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.9
Q ss_pred ccEEEecCCCCHHHHHHHHHH
Q 027195 23 PRALYFPNFATPEQCKSIINM 43 (226)
Q Consensus 23 P~i~~~~~fLs~~Ec~~li~~ 43 (226)
..++.+.+||+.+|.+.+++.
T Consensus 66 ~~vi~v~~~l~~~ei~~i~~~ 86 (87)
T cd05567 66 AQHLSVDNFLNTPEYDELIER 86 (87)
T ss_pred CeEEEEeccCChHHHHHHHHh
Confidence 458899999999999988764
No 108
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=21.49 E-value=61 Score=23.83 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=11.2
Q ss_pred cCCCCHHHHHHH
Q 027195 29 PNFATPEQCKSI 40 (226)
Q Consensus 29 ~~fLs~~Ec~~l 40 (226)
.+|||++|+..|
T Consensus 50 ~dFLt~eE~~~i 61 (114)
T PF03754_consen 50 NDFLTEEEKRII 61 (114)
T ss_pred cccCCHHHHHHH
Confidence 689999999999
No 109
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=21.34 E-value=2.1e+02 Score=17.55 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEeeCccEEEecCCCCHHHHHHHHHHhhc
Q 027195 16 FQVLSWMPRALYFPNFATPEQCKSIINMAKL 46 (226)
Q Consensus 16 ~~~ls~~P~i~~~~~fLs~~Ec~~li~~a~~ 46 (226)
-+.|-|.| .+.+++.+.+.++..|.+
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s 53 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKS 53 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHh
Confidence 35666777 478999999999999865
Done!