BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027197
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 22 FIRKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTL 81
++R I P+++FD N+++ A V + + +QDW + + PL + +W+
Sbjct: 275 YVRAIVPDQTFDELNQMLDNMRKAGLVDIPKM-IQDW---LVDRSIEKFPLMAKIYSWSF 330
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 22 FIRKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTL 81
++R I P+++FD N+++ A V + + +QDW + + PL + +W+
Sbjct: 275 YVRAIVPDQTFDELNQMLDNMRKAGLVDIPKM-IQDW---LVDRSIEKFPLMAKIYSWSF 330
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 22 FIRKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTL 81
++R I P+++FD N+++ A V + + +QDW + + PL + +W+
Sbjct: 281 YVRAIVPDQTFDELNQMLDNMRKAGLVDIPKM-IQDW---LVDRSIEKFPLMAKIYSWSF 336
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 145 LKELGYRDTGLNLTADVTFAAIFTFARMVCGP-YLAYLTLSARNPI 189
LK+ GY+ T N +AD+ A + F V P + TL A++P+
Sbjct: 165 LKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPL 210
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 94 DQRVNVDNTIHHLISIVGIGAGLVYEKSG--SELVAALWITEISSPFLHCRE 143
D RV + +G+G GL E+SG S+ LW+ E P HC E
Sbjct: 207 DPRVTAKRGLRATFYALGLGLGL--EESGLKSQYELLLWLKEKGFPVEHCYE 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,076,773
Number of Sequences: 62578
Number of extensions: 209725
Number of successful extensions: 529
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 8
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)