BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027197
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 9 VVVAVVSWTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTS-LSVQDWRCPVCPLAS 67
V+ ++ W + ++ + +RS+++ RLV+ TH L++ L++ + D P S
Sbjct: 9 VLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGS 68
Query: 68 NSSPLQMQTLAWTLAYLIYDLVCCLFDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVA 127
++PLQ+ L TL Y I+DL C++ Q HH +SI+GI LV +SG+E+ A
Sbjct: 69 PNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNA 128
Query: 128 ALWITEISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSARN 187
L+ +E+++P L R L+E G+ + D F A+FT R+ G L + + +
Sbjct: 129 VLFGSELTNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPT 188
Query: 188 P-IIIKAMALGLQLVSAFWFFKIARMVKYKLAK----WTSKKA 225
P +KA + + VS + F I R K K W S+++
Sbjct: 189 PKWFVKAGGVAMYAVSWCFMFSIWRFAWRKSIKKYHAWRSRRS 231
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%)
Query: 15 SWTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTS-LSVQDWRCPVCPLASNSSPLQ 73
W + ++ ++ +RS+++ RLV+ TH L++ L++ + D P S ++PLQ
Sbjct: 15 GWLSLYVSFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQ 74
Query: 74 MQTLAWTLAYLIYDLVCCLFDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITE 133
+ L TL Y I+DL C++ + HH +SI+GI LV +SG+E+ A L+ +E
Sbjct: 75 VHVLCLTLGYFIFDLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSE 134
Query: 134 ISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSARNP-IIIK 192
I++P L R L+E G+ + D F A+FT R+ G L + + + P +K
Sbjct: 135 ITNPLLQIRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVK 194
Query: 193 AMALGLQLVSAFWFFKIARMVKYKLAK 219
+ + +VS + F I R K K
Sbjct: 195 VGGVAMYVVSWCFMFSIWRFAWRKSIK 221
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%)
Query: 29 NRSFDFCNRLVSTTHAALAVTLTS-LSVQDWRCPVCPLASNSSPLQMQTLAWTLAYLIYD 87
+RS ++ RLV+ TH L++ L++ + D P S ++PLQ+ L TL Y I+D
Sbjct: 29 HRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFD 88
Query: 88 LVCCLFDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKE 147
L C++ Q HH +SI+GI L +SG+E+ A L+ +EI++P L R L+E
Sbjct: 89 LGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPLLQMRWFLRE 148
Query: 148 LGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSARNPI-IIKAMALGLQLVS---- 202
G+ + D F A+FT R+ G +L + + + P +K + + VS
Sbjct: 149 TGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPTPKWFVKVGGVAMYAVSWCFM 208
Query: 203 -AFWFFKIARMVKYKLAKWTSKK 224
+ W F + +K K W S++
Sbjct: 209 VSIWRFAWKKSIK-KYHAWRSRR 230
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 6/204 (2%)
Query: 12 AVVSWTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTS---LSVQDWRCPVCPLASN 68
+++SW +L + + R ++ RLV+ H L + LT+ W P +
Sbjct: 11 SLISWLFLYLLLCHLNSGRDSEWNCRLVTLFHGILIICLTAYIGFIAGPW--PFTHPGTE 68
Query: 69 SSPLQMQTLAWTLAYLIYDLVCCLFDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAA 128
++ Q+ TL +L Y ++D+ C++ + HH +SI GI L +SG E A
Sbjct: 69 NTYFQILTLVLSLGYFLFDMAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAV 128
Query: 129 LWITEISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSARNP 188
L+ +EI++P L R LK +G D+ D+ F +F R+ G + Y L++ P
Sbjct: 129 LFGSEITNPLLQARWFLKRMGCYDSLAGDVVDLLFILLFASVRIGVGSRMLYCELTSPKP 188
Query: 189 -IIIKAMALGLQLVSAFWFFKIAR 211
+I+K + + +S + IAR
Sbjct: 189 SLIVKVGGVAIYTLSWIFMVDIAR 212
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 29/208 (13%)
Query: 25 KIFPNRSFDFCNRLVSTTHAALAVTLTSLSV--QDWRCPVCPLASNSSPLQMQTLAWTLA 82
K+ PN+ D+ +RLVST H AL V L L + D P+ + + +++ +A T
Sbjct: 37 KLPPNKLNDWNSRLVSTVH-ALIVGLFCLYILWYDDAVNEDPVWGDPNLVKLN-VAITCG 94
Query: 83 YLIYD--LVCCLFDQRVNVDNTIHHLISIVGIG----AGLVYEKSGSELVAALWITEISS 136
YL YD L+ C + +V HHL ++ G G++ + L I+E+S+
Sbjct: 95 YLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRL-----ISELST 149
Query: 137 PFLHCREMLKELGY-RDTGLNLTADVTFAAIFTFARM-VCGPYLAYLTLSARNPIIIKAM 194
PF++ R + L Y R L + + A +F R+ V PY A + +P K +
Sbjct: 150 PFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVFGIIYSPTFEK-L 208
Query: 195 ALGLQ-----------LVSAFWFFKIAR 211
L +Q +++ W +KIAR
Sbjct: 209 GLAIQVAWIISCVCLDILNIIWMYKIAR 236
>sp|Q5UQN8|YL438_MIMIV Putative TLC domain-containing protein L438 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L438 PE=4 SV=1
Length = 200
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 77 LAWTLAYLI--YDLVCCLFDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEI 134
L TL Y + Y L+ ++ + NV +HH I IV I + + + A E+
Sbjct: 47 LMLTLVYFLSDYYLMIVKYNPKHNV-YFVHHFIGIVSIYFSYMKYYYLIKYLFAYLTFEL 105
Query: 135 SSPFLHCREMLKELGYRDTGL----NLTADVTFAAIFTFARMVCGPYLAYLTLSARNPI- 189
S+PFL+ + YR+ G+ ++ +++ F +FT R++ G YL ++T + + I
Sbjct: 106 STPFLNI-----AIKYRNQGVYNKCSIFSELAFFILFTVVRIIFGTYLWFVTSNTLSSIE 160
Query: 190 ----IIKAMALGLQLVSAFWFFKIARMVKYKLAKWTSKK 224
+ + LQ ++ +W+++I ++++ KL +K+
Sbjct: 161 YPYNYLIVLPTILQFLNYWWYYRILKILRAKLFGCINKE 199
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 33 DFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTLAYLIYDLVCCL 92
++ N++V+T + ++ +L+ + + + V +++ L L + Y ++D + +
Sbjct: 50 EWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTSTCALSDFILKFISFYFLFDALHLI 109
Query: 93 --FDQRVNVDNTIHHLISIVGIGA----GLVYEKSGSELVAALWITEISSPFLHCREMLK 146
+ Q + IHHL+ VGI + GL Y+K L+ L + EI++PF+H + LK
Sbjct: 110 IYYKQLFDWPIIIHHLV--VGILSYVYIGLYYKKVHLTLLYFL-LFEITNPFIHMKWFLK 166
Query: 147 ELGYRD 152
+L +
Sbjct: 167 DLKLEN 172
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 29 NRSFDFCNRLVSTTHAAL-AVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTLAYLIYD 87
++ ++ +R+VST H+ L + L D PL + + + + +A YLI D
Sbjct: 57 DKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPLWGDPTYVNIN-IATASGYLISD 115
Query: 88 LVCCLFDQRVNVDN--TIHHLISIVGIGAGLVYEKSGSELVAALW--ITEISSPFLHCRE 143
L+ LF+ +V D IHH G+ A +G+ A + + E+SSPF++ R
Sbjct: 116 LLIILFNWKVIGDKFFIIHHC---AGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRW 172
Query: 144 MLKELGY-RDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLS 184
+ L Y + + N+ + +F R++ P + + S
Sbjct: 173 FFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYS 214
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%)
Query: 24 RKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQ-TLAWTLA 82
K+ + ++ +R VS+ HA L V L + + V P ++ +A T
Sbjct: 39 HKLSARQKIEWNSRTVSSFHA-LVVGCFCLYILVYDDAVNADPVWGDPFMVKLNVAVTSG 97
Query: 83 YLIYDLVCCLFDQRVNVDN--TIHHLISIVG----IGAGLVYEKSGSELVAALWITEISS 136
YLI DL+ ++ + D HHL ++ +G G++ L+A E S+
Sbjct: 98 YLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIA-----EFST 152
Query: 137 PFLHCREMLKELGYRDTGL-NLTADVTFAAIFTFARMVCGPYLAYLTLSARNPIIIKAMA 195
PF++ R + LGY L N+ V F R+ P S +
Sbjct: 153 PFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFHRLG 212
Query: 196 LGLQ-----------LVSAFWFFKIAR 211
LG Q +++ W KIA+
Sbjct: 213 LGAQCAWIISSVSLDIMNVMWMIKIAK 239
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Query: 24 RKIFPNRSFDFCNRLVSTTHAALAVTLTSLSV--QDWRCPVCPLASNSSPLQMQTLAWTL 81
R++ + ++ +R VSTTHA L V L + D P+ + ++M +A T
Sbjct: 39 RQLSFGKQCEWDSRCVSTTHA-LVVGSGCLYILAYDEAVNADPIWGDPFWVKMN-VAITC 96
Query: 82 AYLIYDLVCCLFDQRVNVDNTI--HHLISIVGIGAGLVYEKSGSELVAAL-WITEISSPF 138
YL++DL+ +V D + HHL V G V + A I+E+S+PF
Sbjct: 97 GYLVHDLLLLARFWKVMRDPYMVCHHLA--VFYSYGYVLNRGVLPYFANFRLISELSTPF 154
Query: 139 LHCREMLKELGY-RDTGLNLTADVTFAAIFTFARMVCGPYL-----------AYLTLSAR 186
++ R +G R + L + A +F R+ P Y+ L
Sbjct: 155 VNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIG 214
Query: 187 NPIIIKAMALGLQLVSAFWFFKIARMVKYKLAK 219
+ + L +++ FW +KIAR YK+ K
Sbjct: 215 PQVAWIVSCVVLDILNVFWMYKIARGF-YKVVK 246
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 30 RSFDFCNRLVSTTHAALAVTLTSLS-VQDWRCPVCPLASNSSPLQMQTLAWTLAYLIYDL 88
+ ++ R+VS HA L + +S V+ ++ N S L + L+ + Y I+DL
Sbjct: 62 KKLEWDQRVVSMIHAFLVLPFCIISAVESFKYGDIFYFQNDSLLMV--LSISSGYFIWDL 119
Query: 89 VCCLFDQRVNVDNTIHHLISIVGIGAGL-VYEKSGS----ELVAALWITEISSPFLHCRE 143
+ C D ++ I H +I+G+ + + V G +VA L ITEIS+ L+ +
Sbjct: 120 IICYKDPKLVGTPMIIH--AIMGLSSNIYVALPHGRPCFVPIVAILLITEISTIPLNMKG 177
Query: 144 MLKELGYRDTGLNLTADVTFAAIFTFARMVCG-PYLAYL 181
++ + + N + F F +R + G P+ YL
Sbjct: 178 FIQVVNSKSKYYNWSLG-AFVITFLVSRCIIGLPFDIYL 215
>sp|Q96CP7|TLCD1_HUMAN TLC domain-containing protein 1 OS=Homo sapiens GN=TLCD1 PE=2 SV=1
Length = 247
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 28 PNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTLA----- 82
P R++ + N LVS H+ ++ L V W+ P ++++T AW+L+
Sbjct: 39 PLRTWRWHNLLVSFAHSIVSGIWALLCV--WQTP-------DMLVEIET-AWSLSGYLLV 88
Query: 83 -----YLIYDLVCCL--FDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEIS 135
Y I+D V + R + + +HH++++ +G+ + V L + E+S
Sbjct: 89 CFSAGYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVLTL-LVEVS 147
Query: 136 SPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSARNPIIIKAMA 195
+ FL R M+K +D L ++ R+ YL + L N +
Sbjct: 148 NIFLTIRMMMKISNAQDHLLYRVNKYVNLVMYFLFRLAPQAYLTHFFLRYVNQRTLGTFL 207
Query: 196 LGLQLV 201
LG+ L+
Sbjct: 208 LGILLM 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,307,974
Number of Sequences: 539616
Number of extensions: 2701085
Number of successful extensions: 6880
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6868
Number of HSP's gapped (non-prelim): 21
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)