Query 027197
Match_columns 226
No_of_seqs 128 out of 791
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00724 TLC TRAM, LAG1 and 100.0 1.7E-32 3.8E-37 224.3 20.1 188 29-217 1-204 (205)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 4.6E-32 9.9E-37 219.6 18.9 178 33-211 1-198 (198)
3 KOG4561 Uncharacterized conser 100.0 2.7E-34 5.8E-39 240.5 2.2 216 7-225 30-275 (281)
4 KOG4474 Uncharacterized conser 100.0 3.8E-30 8.3E-35 211.2 13.3 203 8-211 19-231 (253)
5 KOG1607 Protein transporter of 99.3 7E-10 1.5E-14 95.1 18.4 186 32-220 87-292 (318)
6 COG5058 LAG1 Protein transport 99.0 1.5E-09 3.2E-14 92.3 10.1 205 10-219 117-369 (395)
7 PF05392 COX7B: Cytochrome C o 75.9 7.3 0.00016 26.6 4.4 35 2-36 35-79 (80)
8 PF01151 ELO: GNS1/SUR4 family 72.4 57 0.0012 27.3 20.3 141 79-224 99-249 (250)
9 KOG1608 Protein transporter of 71.6 69 0.0015 27.9 18.5 200 6-211 80-317 (374)
10 PRK00523 hypothetical protein; 45.6 79 0.0017 21.4 5.0 26 129-154 29-58 (72)
11 TIGR00796 livcs branched-chain 39.0 2.4E+02 0.0052 25.3 8.8 79 8-89 111-190 (378)
12 PF03672 UPF0154: Uncharacteri 33.2 1.2E+02 0.0026 20.0 4.4 20 135-154 28-50 (64)
13 PHA02690 hypothetical protein; 30.8 82 0.0018 21.7 3.3 42 124-174 23-64 (90)
14 COG3311 AlpA Predicted transcr 28.1 40 0.00086 22.7 1.5 29 131-159 6-34 (70)
15 PF14293 YWFCY: YWFCY protein 27.8 89 0.0019 20.4 3.0 17 191-207 16-32 (61)
16 COG3763 Uncharacterized protei 27.8 1.8E+02 0.0039 19.6 4.5 20 135-154 35-57 (71)
17 PF03511 Fanconi_A: Fanconi an 27.0 1.5E+02 0.0033 19.4 4.0 25 9-33 4-28 (64)
18 cd01403 Cyt_c_Oxidase_VIIb Cyt 23.4 8.9 0.00019 23.8 -2.1 23 2-24 7-29 (51)
19 PF14018 DUF4234: Domain of un 20.5 2.6E+02 0.0057 18.4 4.7 24 194-217 49-72 (75)
20 PF07851 TMPIT: TMPIT-like pro 20.2 6.1E+02 0.013 22.4 12.0 126 99-224 181-330 (330)
No 1
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=1.7e-32 Score=224.34 Aligned_cols=188 Identities=28% Similarity=0.369 Sum_probs=153.3
Q ss_pred CCccCchhhhHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhc----cCCCchhHH
Q 027197 29 NRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCP-VCPLASNSSPLQMQTLAWTLAYLIYDLVCCLFD----QRVNVDNTI 103 (226)
Q Consensus 29 ~~~~~w~~r~vS~iHa~v~~~~~~~~l~~~~~~-~d~~~~~~t~~~~~~~~is~GYfl~Dl~~~~~~----~~~~~~~~~ 103 (226)
+|+.||++|++|.+||.+++..+++......++ .+....++++.++...++++|||++|+..+..+ +++++++++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~~~~ 80 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKEMLV 80 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 578999999999999999999887654422222 122334668888999999999999999999843 233799999
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhhhhhhhhHhhc
Q 027197 104 HHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTL 183 (226)
Q Consensus 104 HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~~g~~~s~~~~~n~~~~~~~F~~~Ri~~~~~~~~~~~ 183 (226)
||++++.++..++..+... .....++++|+||||+|+||++++.|.++++.+..|+.+|+++|+.+|++..|+..+...
T Consensus 81 HHv~~~~~~~~~~~~~~~~-~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~~~ 159 (205)
T smart00724 81 HHIATLLLISLSYVLNFTR-LGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVT 159 (205)
T ss_pred HHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877554 344589999999999999999999999999999999999999999999999999876643
Q ss_pred cc------C-C-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027197 184 SA------R-N-P---IIIKAMALGLQLVSAFWFFKIARMVKYKL 217 (226)
Q Consensus 184 ~~------~-~-p---~~~~~~~~~l~~ln~~Wf~~i~~~~~k~~ 217 (226)
.. + . | ........++++||++|+++|+|+++|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 160 VHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred hhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 1 1 2 23345678899999999999999998875
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.6e-32 Score=219.61 Aligned_cols=178 Identities=29% Similarity=0.360 Sum_probs=144.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcc-CC--CchhHHHH
Q 027197 33 DFCNRLVSTTHAALAVTLTSLSVQDWR----CPVCPLASNSSPLQMQTLAWTLAYLIYDLVCCLFDQ-RV--NVDNTIHH 105 (226)
Q Consensus 33 ~w~~r~vS~iHa~v~~~~~~~~l~~~~----~~~d~~~~~~t~~~~~~~~is~GYfl~Dl~~~~~~~-~~--~~~~~~HH 105 (226)
||+||++|++|+++++.+|++++.+.+ ...|...+++++..+...++++|||++|+.++.... .. ..++++||
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH 80 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHH 80 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence 799999999999999999999877544 123444445566667799999999999999998743 22 38999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHhhhhhhhhhHhhc
Q 027197 106 LISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKEL-GY-RDTGLNLTADVTFAAIFTFARMVCGPYLAYLTL 183 (226)
Q Consensus 106 ~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~~-g~-~~s~~~~~n~~~~~~~F~~~Ri~~~~~~~~~~~ 183 (226)
++++.++..++..+ .+.+.+..++++|+||||+|+||++++. |. ++++.+..|+.+|+++|+.+|++..|+..+...
T Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 81 VVTLVLFYFSYFYN-FGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHhhHHH-HhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888765 4456678899999999999999999999 77 678999999999999999999999999765432
Q ss_pred cc------C--Cc---HHHHHHHHHHHHHHHHHHHHHHH
Q 027197 184 SA------R--NP---IIIKAMALGLQLVSAFWFFKIAR 211 (226)
Q Consensus 184 ~~------~--~p---~~~~~~~~~l~~ln~~Wf~~i~~ 211 (226)
.. . .+ .....+..++++||++|+++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 21 1 11 23345567789999999999987
No 3
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=240.55 Aligned_cols=216 Identities=17% Similarity=0.256 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHH---Hh-----------hCCCCccCch-hhhHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCCCc
Q 027197 7 KLVVVAVVSWTAAFLFI---RK-----------IFPNRSFDFC-NRLVSTTHAALAVTLTSLSVQDWRC-PVCPLASNSS 70 (226)
Q Consensus 7 ~~~~~~~~~~~~~~~~~---~~-----------l~~~~~~~w~-~r~vS~iHa~v~~~~~~~~l~~~~~-~~d~~~~~~t 70 (226)
.....+.+++..+|..+ +. +.++.|.||| +|++|++|+++++ +++.+++.+. ++|...++..
T Consensus 30 ~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y~lf~~~~f~yD~~~~~~~ 107 (281)
T KOG4561|consen 30 TAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS--SLYFLFGTPYFHYDKATGYSV 107 (281)
T ss_pred HHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc--ccceeecCcccchhhhhccce
Confidence 34556778888888888 32 6678999999 9999999999987 6666554332 3233322211
Q ss_pred HHHHHH-HHHHHHHHHHHHHHH-h-hccCCCchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHH
Q 027197 71 PLQMQT-LAWTLAYLIYDLVCC-L-FDQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKE 147 (226)
Q Consensus 71 ~~~~~~-~~is~GYfl~Dl~~~-~-~~~~~~~~~~~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~ 147 (226)
..+... .+.-.||++.|+..+ . .+...+.+|++||+++. ........+..+.++....+++|+||||+|+||++.+
T Consensus 108 ~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~-~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~ 186 (281)
T KOG4561|consen 108 VWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGIEFVIHHIASL-VFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDK 186 (281)
T ss_pred eecceeeccccceEecccceeEEEEeeeecCeeEEeeHHHHh-hhheeeEecCccceeeeeeheeecCCceeeHHHHHHH
Confidence 111111 011155999999744 3 34556999999999882 2333333344567888899999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHhhhhhhhhhHhhc--cc-----CCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027197 148 LGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTL--SA-----RNP----IIIKAMALGLQLVSAFWFFKIARMVKYK 216 (226)
Q Consensus 148 ~g~~~s~~~~~n~~~~~~~F~~~Ri~~~~~~~~~~~--~~-----~~p----~~~~~~~~~l~~ln~~Wf~~i~~~~~k~ 216 (226)
+|+|+|+.|.+||++++++|+++|++..|++.+.++ .+ +.| .....+.+.++++|++||+||+|+++|.
T Consensus 187 ~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~ 266 (281)
T KOG4561|consen 187 AGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKV 266 (281)
T ss_pred cCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888766554 11 122 3445567899999999999999999999
Q ss_pred hhccccccc
Q 027197 217 LAKWTSKKA 225 (226)
Q Consensus 217 ~~~~~~~~~ 225 (226)
+++.|+++.
T Consensus 267 ~~~~~~~~~ 275 (281)
T KOG4561|consen 267 LKKAKTSPP 275 (281)
T ss_pred cCcccCCCh
Confidence 988766543
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=211.17 Aligned_cols=203 Identities=25% Similarity=0.292 Sum_probs=166.2
Q ss_pred HHHHHHHH-HHHHHHHHHhhCCCCccCchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 027197 8 LVVVAVVS-WTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVCPLASNSSPLQMQTLAWTLAYLIY 86 (226)
Q Consensus 8 ~~~~~~~~-~~~~~~~~~~l~~~~~~~w~~r~vS~iHa~v~~~~~~~~l~~~~~~~d~~~~~~t~~~~~~~~is~GYfl~ 86 (226)
.++-+.++ |...|.-.|.+++-+|.++.|+.||++||++++.++...+.+++++.++.....+..+..+.++|+|||+|
T Consensus 19 i~~~~~~~~w~~~f~~~~~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~~~~~l~~fS~gYfiy 98 (253)
T KOG4474|consen 19 IVVYSALFGWGLIFFDVRWFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSLSAYQLLLFSAGYFIY 98 (253)
T ss_pred hhHHHHHhhcceeeeeeEeeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444 66666666656677799999999999999999999998887776665554334466667889999999999
Q ss_pred HHHHHhhcc--CCCchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHHhCCCCCh-hHHHHHHHH
Q 027197 87 DLVCCLFDQ--RVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKELGYRDTG-LNLTADVTF 163 (226)
Q Consensus 87 Dl~~~~~~~--~~~~~~~~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~~g~~~s~-~~~~n~~~~ 163 (226)
|+++|..++ ...+++++||++++.++..+++.++++. ++.+.+++|+||||||+|.+++..|.+++. .++++..++
T Consensus 99 D~vDm~~~~~s~~s~e~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN 177 (253)
T KOG4474|consen 99 DLVDMLMNEQSELSWEYLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLN 177 (253)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999876 4579999999999999999999988765 568899999999999999999999997654 599999999
Q ss_pred HHHHHHHhhhhhhhhhHhhccc--CCcHHH----HHHHHHHHHHHHHHHHHHHH
Q 027197 164 AAIFTFARMVCGPYLAYLTLSA--RNPIII----KAMALGLQLVSAFWFFKIAR 211 (226)
Q Consensus 164 ~~~F~~~Ri~~~~~~~~~~~~~--~~p~~~----~~~~~~l~~ln~~Wf~~i~~ 211 (226)
.++|+++|.++..|+++....+ ..|+.. ..+...+.++|...++++++
T Consensus 178 ~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~~~~~gg~~~l~~~n~~l~~rll~ 231 (253)
T KOG4474|consen 178 LITFFFFRLIPQIYLTYFLIANAPFLHWYLKLFALGGLLCLAVINTVLTLRLLA 231 (253)
T ss_pred HHHHHHHHhccceeEEEEEeeeCCCcceehhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999887765543 344322 22457899999999999998
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7e-10 Score=95.14 Aligned_cols=186 Identities=17% Similarity=0.236 Sum_probs=127.3
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHhcCCCCCCC------CC-CCCCcHHHHHHHHHHHHHHHHHHHHHhh--ccCCCchhH
Q 027197 32 FDFCNRLVSTTHAALAVTLTSLSVQDWRCPVC------PL-ASNSSPLQMQTLAWTLAYLIYDLVCCLF--DQRVNVDNT 102 (226)
Q Consensus 32 ~~w~~r~vS~iHa~v~~~~~~~~l~~~~~~~d------~~-~~~~t~~~~~~~~is~GYfl~Dl~~~~~--~~~~~~~~~ 102 (226)
.+.....=..+-=.++...|++...+.++-.| .- ..+.++..+..-.+-.|+..+-+..... .+++.++|+
T Consensus 87 ~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkDf~~m~ 166 (318)
T KOG1607|consen 87 KKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKDFWEMV 166 (318)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccHHHHHH
Confidence 34444444455555566666655444222111 11 1122333345556788998888887764 345678999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhhhhhhhh-Hh
Q 027197 103 IHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLA-YL 181 (226)
Q Consensus 103 ~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~~g~~~s~~~~~n~~~~~~~F~~~Ri~~~~~~~-~~ 181 (226)
+||++++.....+...+..-. ......+++.|.++|.+.++++..+.+ ..-.....+|+..|+..|+...|... +.
T Consensus 167 vHHvvTl~Li~lSy~~~f~R~-G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL~~~p~wil~s 243 (318)
T KOG1607|consen 167 VHHVVTLILISLSYVFNFTRV-GTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRLIYYPFWILRS 243 (318)
T ss_pred HHHHHHHHHHHHHHHhhhhcc-cceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877776553221 225689999999999999999888754 56667778999999999998888753 22
Q ss_pred hc------cc--CCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027197 182 TL------SA--RNP--IIIKAMALGLQLVSAFWFFKIARMVKYKLAKW 220 (226)
Q Consensus 182 ~~------~~--~~p--~~~~~~~~~l~~ln~~Wf~~i~~~~~k~~~~~ 220 (226)
+. .+ ..| ....+...++++||++|++.|.|++.|..++|
T Consensus 244 t~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g 292 (318)
T KOG1607|consen 244 TSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRG 292 (318)
T ss_pred hHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22 11 222 45566778999999999999999999999844
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.5e-09 Score=92.27 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHh-----h-----------CCCCccCchhhhHHHHHHHHHHHHHHHHhcCCC-C--CC------CC
Q 027197 10 VVAVVSWTAAFLFIRK-----I-----------FPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWR-C--PV------CP 64 (226)
Q Consensus 10 ~~~~~~~~~~~~~~~~-----l-----------~~~~~~~w~~r~vS~iHa~v~~~~~~~~l~~~~-~--~~------d~ 64 (226)
....++|..+|...|- + ++++..+.+...=+..--.+++..|+++.-..+ + .. -+
T Consensus 117 ~~F~lfy~ifftf~ref~md~virpf~l~~~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp 196 (395)
T COG5058 117 LCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYP 196 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCc
Confidence 3456778888887774 1 112224566666666666666667765432211 1 11 12
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhh----ccCCCchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhh
Q 027197 65 LASNSSPLQMQTLAWTLAYLIYDLVCCLF----DQRVNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLH 140 (226)
Q Consensus 65 ~~~~~t~~~~~~~~is~GYfl~Dl~~~~~----~~~~~~~~~~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~ 140 (226)
..+. ++.-+..-.+-.||-+......+. ++++-++++.||++++..+..++..+..-.+. +....+++|+|||.
T Consensus 197 ~~~~-p~lfk~fYliqaafw~qQa~ilvLqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~Gl-AI~itmDvSD~~Ls 274 (395)
T COG5058 197 VFYN-PFLFKAFYLIQAAFWAQQACILVLQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGL-AIYITMDVSDFFLS 274 (395)
T ss_pred cccC-cHHHHHHHHHHHHHHHHHHhhheeeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-eEEEEEeccHHHHH
Confidence 3323 444355556778888888554432 35567899999999998777776544322222 45788999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhhhhhhhhHhhccc---------C--------Cc--HHHHHHHHHHHHH
Q 027197 141 CREMLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYLAYLTLSA---------R--------NP--IIIKAMALGLQLV 201 (226)
Q Consensus 141 ~r~~l~~~g~~~s~~~~~n~~~~~~~F~~~Ri~~~~~~~~~~~~~---------~--------~p--~~~~~~~~~l~~l 201 (226)
+.+.++..|- .+..-....|+..|+-.|-....-+.+..+++ + .| .++.+....++.+
T Consensus 275 ~sK~lnYl~~---~l~~~iF~iFv~~wIysRHyln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlv 351 (395)
T COG5058 275 LSKTLNYLNS---VLATFIFGIFVFIWIYSRHYLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLV 351 (395)
T ss_pred HHHHHHHhhc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHH
Confidence 9999998874 55555567888999999966544333322221 0 12 1234456789999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 027197 202 SAFWFFKIARMVKYKLAK 219 (226)
Q Consensus 202 n~~Wf~~i~~~~~k~~~~ 219 (226)
|++|+..|+|.++|.+..
T Consensus 352 niyWl~lIvRvayRv~~~ 369 (395)
T COG5058 352 NIYWLFLIVRVAYRVIWE 369 (395)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999843
No 7
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=75.92 E-value=7.3 Score=26.62 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCcc---Cchh
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIRK-------IFPNRSF---DFCN 36 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~---~w~~ 36 (226)
|+|--.+++.|..||.+++..+-. |+|-.|+ ||+.
T Consensus 35 dKYGn~vL~~Ga~FC~~~W~y~~TQ~GIeWNlSPVGRVtPKeWr~ 79 (80)
T PF05392_consen 35 DKYGNAVLASGATFCVAVWTYVATQIGIEWNLSPVGRVTPKEWRE 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSS------STTTS-------
T ss_pred hhcCceeeecccchhhhhHhhhheecceeecCCcccccCchhhcc
Confidence 689899999999999999888763 7776555 5653
No 8
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=72.39 E-value=57 Score=27.34 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchhhhHHHHHHHhCCCC--Chh
Q 027197 79 WTLAYLIYDLVCCLFDQR-VNVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPFLHCREMLKELGYRD--TGL 155 (226)
Q Consensus 79 is~GYfl~Dl~~~~~~~~-~~~~~~~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpfl~~r~~l~~~g~~~--s~~ 155 (226)
+|=-+=+.|++.++..++ ....-+-||+..+...-..+..+..+... ....+.-.=-.+|..-.++...|.|+ .+.
T Consensus 99 lSK~~EllDTvflvLrkK~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~-~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~ 177 (250)
T PF01151_consen 99 LSKYYELLDTVFLVLRKKQLSFLHVYHHASTLLYCWISYKYGPGGQIW-FIAALNSFVHVIMYSYYFLSALGIRKVPRWW 177 (250)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHHhhhhhhhhhhhheeeeccccchh-HHHHHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 444444678887765443 35556899987766444444433122111 12233333445566677788888764 344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhhc-c-c-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 027197 156 NLTADVTFAAIFTFARMVCGPYLAYLTL-S-A-----RNPIIIKAMALGLQLVSAFWFFKIARMVKYKLAKWTSKK 224 (226)
Q Consensus 156 ~~~n~~~~~~~F~~~Ri~~~~~~~~~~~-~-~-----~~p~~~~~~~~~l~~ln~~Wf~~i~~~~~k~~~~~~~~~ 224 (226)
-+....+-++-|.++=.. ..+..+... . . ..|... .....+++..-++.-.+...|.+.|||++|
T Consensus 178 k~~IT~~Qi~QF~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~---~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k 249 (250)
T PF01151_consen 178 KKYITSLQIVQFVIGIVH-TVYALYYYFFPGGDCDTSGYPKFN---AILGLVYYVSYLYLFINFYIKSYIKKKKKK 249 (250)
T ss_pred HHHHhHHhhhhhHHHHHH-HHHHhheeccCCCCCCcchhHHHH---HHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 555555556665544322 222222211 1 1 122221 223344455555666777788887777765
No 9
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.59 E-value=69 Score=27.93 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----------hCCCCccCchhhhHHHHHHHHHHHHHHHHhcCCCCCCC--CCC--CCCc
Q 027197 6 LKLVVVAVVSWTAAFLFIRK-----------IFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRCPVC--PLA--SNSS 70 (226)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~w~~r~vS~iHa~v~~~~~~~~l~~~~~~~d--~~~--~~~t 70 (226)
+..|.+-.+.|-.++.+++- +++.+..+.|..--=...-+.+.++|.+++.......| .+| +|..
T Consensus 80 l~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~~lW~~yPh~ 159 (374)
T KOG1608|consen 80 LATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPTSLWEGYPHR 159 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChHHHHhcCCCc
Confidence 44556666666666666552 45555556654433334445666677765543211111 222 2222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhhc--cCC-CchhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcchh-hhHHH
Q 027197 71 P---LQMQTLAWTLAYLIYDLVCCLFD--QRV-NVDNTIHHLISIVGIGAGLVYEKSGSELVAALWITEISSPF-LHCRE 143 (226)
Q Consensus 71 ~---~~~~~~~is~GYfl~Dl~~~~~~--~~~-~~~~~~HH~v~l~~~~~~~~~~~~~~~~~~~~ll~E~Stpf-l~~r~ 143 (226)
. ..++....-++|-+.-+=..+.. +++ .+.-++|-.+.+.-+..++..+.. -++..++..|-.|-+ -|+..
T Consensus 160 ~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYllnl~--rlgLvLl~LhYftellfHi~r 237 (374)
T KOG1608|consen 160 VMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLNLN--RLGLVLLTLHYFTELLFHIAR 237 (374)
T ss_pred hhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 2 12333344455555544444332 122 233344433333333333332211 122345555544444 45665
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHHHHHhhhhhhhh----hHhhcccCCc-----------HHHHH-HHHHHHHHHHHHHH
Q 027197 144 MLKELGYRDTGLNLTADVTFAAIFTFARMVCGPYL----AYLTLSARNP-----------IIIKA-MALGLQLVSAFWFF 207 (226)
Q Consensus 144 ~l~~~g~~~s~~~~~n~~~~~~~F~~~Ri~~~~~~----~~~~~~~~~p-----------~~~~~-~~~~l~~ln~~Wf~ 207 (226)
+.--.|.+..+... ++...|++.|++....- .|.....++| ..++. .......+|.+-.|
T Consensus 238 lfyf~dek~~k~fs----lwa~vF~l~Rl~tliiaVlt~gfgla~~en~~~D~~~GNfN~l~~rl~vL~~vc~~Qa~l~w 313 (374)
T KOG1608|consen 238 LFYFSDEKYQKLFS----LWAAVFVLGRLGTLIIAVLTVGFGLAGAENQFVDISTGNFNTLAIRLAVLLSVCALQAFLMW 313 (374)
T ss_pred HheecccchhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666555554 45777888888865542 2333222211 22222 34556777887777
Q ss_pred HHHH
Q 027197 208 KIAR 211 (226)
Q Consensus 208 ~i~~ 211 (226)
+.+.
T Consensus 314 ~fI~ 317 (374)
T KOG1608|consen 314 SFIT 317 (374)
T ss_pred HHHH
Confidence 6655
No 10
>PRK00523 hypothetical protein; Provisional
Probab=45.58 E-value=79 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=20.4
Q ss_pred HHHHhhc-chhhh---HHHHHHHhCCCCCh
Q 027197 129 LWITEIS-SPFLH---CREMLKELGYRDTG 154 (226)
Q Consensus 129 ~ll~E~S-tpfl~---~r~~l~~~g~~~s~ 154 (226)
.+--|+. ||++| +|.++...|+|+|-
T Consensus 29 ~~~k~l~~NPpine~mir~M~~QMGqKPSe 58 (72)
T PRK00523 29 MFKKQIRENPPITENMIRAMYMQMGRKPSE 58 (72)
T ss_pred HHHHHHHHCcCCCHHHHHHHHHHhCCCccH
Confidence 3444566 99999 89999999998764
No 11
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=39.03 E-value=2.4e+02 Score=25.33 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCccCchhhhHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCCCcHHHHHHHHHHHHHHHH
Q 027197 8 LVVVAVVSWTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTSLSVQDWRC-PVCPLASNSSPLQMQTLAWTLAYLIY 86 (226)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~w~~r~vS~iHa~v~~~~~~~~l~~~~~-~~d~~~~~~t~~~~~~~~is~GYfl~ 86 (226)
...++.+|+..++.++ +.|+|-.|+-.+..+-+=-+....+....+.+... +..+.. +...-+.+..++.-||..+
T Consensus 111 l~i~siiff~i~~~l~--~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~-~~~~~~~f~~g~l~GY~Tm 187 (378)
T TIGR00796 111 LFIFSLIFFAVVLLLS--LNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGPILAASG-AYASQQAFSKGFLEGYLTM 187 (378)
T ss_pred HHHHHHHHHHHHHHHH--cCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCccc-ccccccHHHHHHHHHHHHH
Confidence 4557777777777764 45666667777776655444444333333433211 111111 1000024677899999999
Q ss_pred HHH
Q 027197 87 DLV 89 (226)
Q Consensus 87 Dl~ 89 (226)
|.+
T Consensus 188 D~l 190 (378)
T TIGR00796 188 DAL 190 (378)
T ss_pred HHH
Confidence 944
No 12
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=33.21 E-value=1.2e+02 Score=20.00 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.9
Q ss_pred cchhhh---HHHHHHHhCCCCCh
Q 027197 135 SSPFLH---CREMLKELGYRDTG 154 (226)
Q Consensus 135 Stpfl~---~r~~l~~~g~~~s~ 154 (226)
.||++| +|.++...|++.|-
T Consensus 28 ~NPpine~mir~M~~QMG~kpSe 50 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSE 50 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccH
Confidence 599977 89999999998764
No 13
>PHA02690 hypothetical protein; Provisional
Probab=30.75 E-value=82 Score=21.71 Aligned_cols=42 Identities=21% Similarity=0.084 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhhh
Q 027197 124 ELVAALWITEISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVC 174 (226)
Q Consensus 124 ~~~~~~ll~E~Stpfl~~r~~l~~~g~~~s~~~~~n~~~~~~~F~~~Ri~~ 174 (226)
|+-...--.|=|||.+.--| ..++...--.|.+++.++|+++
T Consensus 23 YLeAIqrhlEgs~plLR~~~---------RlLfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 23 YLEAIQRHLEGSTPLLRQMW---------RLLFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred HHHHHHHHHhcCCHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556788888876544 3457777778899999999876
No 14
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=28.14 E-value=40 Score=22.70 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHhhcchhhhHHHHHHHhCCCCChhHHHH
Q 027197 131 ITEISSPFLHCREMLKELGYRDTGLNLTA 159 (226)
Q Consensus 131 l~E~Stpfl~~r~~l~~~g~~~s~~~~~n 159 (226)
.++.+++++.++..+..+|+..+.+|+..
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr~i 34 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYRLI 34 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHHHH
Confidence 35678999999999999999888877653
No 15
>PF14293 YWFCY: YWFCY protein
Probab=27.83 E-value=89 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.743 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027197 191 IKAMALGLQLVSAFWFF 207 (226)
Q Consensus 191 ~~~~~~~l~~ln~~Wf~ 207 (226)
.+...+.+.++|+||++
T Consensus 16 ~R~iSI~~l~ih~Y~~C 32 (61)
T PF14293_consen 16 MRAISILFLVIHFYWFC 32 (61)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677889999999975
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.80 E-value=1.8e+02 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.2
Q ss_pred cchhhh---HHHHHHHhCCCCCh
Q 027197 135 SSPFLH---CREMLKELGYRDTG 154 (226)
Q Consensus 135 Stpfl~---~r~~l~~~g~~~s~ 154 (226)
-||++| +|-++...|+|+|-
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe 57 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSE 57 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchH
Confidence 599999 89999999998764
No 17
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=26.98 E-value=1.5e+02 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccC
Q 027197 9 VVVAVVSWTAAFLFIRKIFPNRSFD 33 (226)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~ 33 (226)
.+.+++|+..+=+++.++.|++..|
T Consensus 4 lLvsLfFFSLM~LlSs~l~p~~~~d 28 (64)
T PF03511_consen 4 LLVSLFFFSLMGLLSSYLAPKEGAD 28 (64)
T ss_pred hHHHHHHHHHHHHHHHhcCcccccc
Confidence 4578899999999999999987664
No 18
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=23.42 E-value=8.9 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIR 24 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (226)
|+|--..++.|..||.+++..+-
T Consensus 7 dKYGn~~l~~Ga~Fc~avw~~v~ 29 (51)
T cd01403 7 DKYGNAVLISGATFCTAVWTYVM 29 (51)
T ss_pred hhcCceEEecccchhhhhhhhee
Confidence 45666677888899999887764
No 19
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=20.50 E-value=2.6e+02 Score=18.35 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027197 194 MALGLQLVSAFWFFKIARMVKYKL 217 (226)
Q Consensus 194 ~~~~l~~ln~~Wf~~i~~~~~k~~ 217 (226)
..+...+.+++|.+|+.+.+.+..
T Consensus 49 ~ilt~gi~~i~w~~k~~~~i~~~~ 72 (75)
T PF14018_consen 49 SILTCGIYSIYWAYKLGNRINEEA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999988776544
No 20
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.20 E-value=6.1e+02 Score=22.45 Aligned_cols=126 Identities=22% Similarity=0.196 Sum_probs=60.1
Q ss_pred chhHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHhhc---chhhhH---HH---HHHHhCCCCC--------hhHHHH
Q 027197 99 VDNTIHHLISIVGIGAGLVYEKSGSEL--VAALWITEIS---SPFLHC---RE---MLKELGYRDT--------GLNLTA 159 (226)
Q Consensus 99 ~~~~~HH~v~l~~~~~~~~~~~~~~~~--~~~~ll~E~S---tpfl~~---r~---~l~~~g~~~s--------~~~~~n 159 (226)
.-.+.||-+|.+.-...+.++.+..|- -.-++..-+- --+++- |. -++.+|.++. .....-
T Consensus 181 ~WW~~HHy~s~~~s~v~Ltwp~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~ 260 (330)
T PF07851_consen 181 GWWVFHHYISTFLSGVMLTWPDGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWR 260 (330)
T ss_pred HHHHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhc
Confidence 446899999988777777666433221 1111111111 111111 11 1233454431 123444
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhhcc----c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 027197 160 DVTFAAIFTFARMVCGPYLAYLTLS----A-RNPIIIKAMALGLQLVSAFWFFKIARMVKYKLAKWTSKK 224 (226)
Q Consensus 160 ~~~~~~~F~~~Ri~~~~~~~~~~~~----~-~~p~~~~~~~~~l~~ln~~Wf~~i~~~~~k~~~~~~~~~ 224 (226)
++.|..-|+++=-++..|.-+..+. . ...|-+.++++.+.+|-+-=|...++.+..|+++++|-|
T Consensus 261 ~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~f~~l~~gN~~tt~~v~~~K~~~~~~~~ 330 (330)
T PF07851_consen 261 GLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLLFLILFLGNFFTTLKVVHQKLKKKAKMK 330 (330)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence 5666666655544454443333221 1 133655554443333333333567777888887766643
Done!