Query 027197
Match_columns 226
No_of_seqs 128 out of 791
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_K IHQ, cytochrome C oxida 81.8 2.9 9.8E-05 25.6 4.5 35 2-36 11-55 (56)
2 2y69_K Cytochrome C oxidase po 75.0 5.2 0.00018 26.3 4.5 35 2-36 35-79 (80)
3 3idw_A Actin cytoskeleton-regu 5.4 3E+02 0.01 17.7 1.6 16 208-223 56-71 (72)
4 2o7g_A Probable RNA polymerase 5.0 3.8E+02 0.013 17.5 2.2 18 204-221 76-93 (112)
5 2k9p_A Pheromone alpha factor 4.8 5.8E+02 0.02 16.5 2.8 24 150-175 45-68 (80)
6 3m31_A Endoplasmic oxidoreduct 4.7 4.1E+02 0.014 22.9 2.5 18 36-53 185-202 (388)
7 1h3l_A RNA polymerase sigma fa 4.7 4E+02 0.014 16.3 2.0 18 204-221 65-82 (87)
8 3k6g_D Telomeric repeat-bindin 4.4 2.6E+02 0.0088 15.8 0.7 18 208-225 12-29 (42)
9 4ezc_A UREA transporter 1; mem 3.9 1.3E+03 0.044 19.6 5.1 30 10-53 235-264 (384)
10 3bya_B Glutamate [NMDA] recept 3.9 5.3E+02 0.018 12.7 2.1 15 211-225 11-25 (26)
No 1
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=81.82 E-value=2.9 Score=25.60 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCcc---Cchh
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIRK-------IFPNRSF---DFCN 36 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~---~w~~ 36 (226)
|+|--.+++.|..||.+++..+-. |+|-.|+ ||++
T Consensus 11 dKYGn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtPkeWr~ 55 (56)
T 1v54_K 11 DKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWRE 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCCCCCC-
T ss_pred hhcCceeeecchhhhHhhHhhhheeeceeeccCcccccCchhhcc
Confidence 688889999999999999887763 7775554 5653
No 2
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.96 E-value=5.2 Score=26.33 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCcc---Cchh
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIRK-------IFPNRSF---DFCN 36 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~---~w~~ 36 (226)
|+|--.+++.|..||.+++..+-. |+|-.|+ ||++
T Consensus 35 dKYGn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtPKeWr~ 79 (80)
T 2y69_K 35 DKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWRE 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCCCCCC-
T ss_pred hhcCceeeecchhHHHhhHHHhheecceeecCCcccccCcccccc
Confidence 688889999999999999888763 7775555 5653
No 3
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=5.36 E-value=3e+02 Score=17.69 Aligned_cols=16 Identities=6% Similarity=0.192 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhccccc
Q 027197 208 KIARMVKYKLAKWTSK 223 (226)
Q Consensus 208 ~i~~~~~k~~~~~~~~ 223 (226)
+++|.+.+++.++++.
T Consensus 56 rVmk~l~~k~~r~~~~ 71 (72)
T 3idw_A 56 RVMKHLDKKFGRENIA 71 (72)
T ss_dssp HHHHHHHHHTTC----
T ss_pred HHHHHHHHHhCcCcCC
Confidence 6778888888776654
No 4
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=5.01 E-value=3.8e+02 Score=17.46 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027197 204 FWFFKIARMVKYKLAKWT 221 (226)
Q Consensus 204 ~Wf~~i~~~~~k~~~~~~ 221 (226)
-|.++|.+.......+|+
T Consensus 76 ~wl~~i~~n~~~d~~R~~ 93 (112)
T 2o7g_A 76 TWLLAIARHVVADHIRHV 93 (112)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 477777775544444333
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=4.82 E-value=5.8e+02 Score=16.54 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=18.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhh
Q 027197 150 YRDTGLNLTADVTFAAIFTFARMVCG 175 (226)
Q Consensus 150 ~~~s~~~~~n~~~~~~~F~~~Ri~~~ 175 (226)
.|+|+.+..|+...++.. .|.+..
T Consensus 45 krrspiF~lN~~~L~l~i--irs~l~ 68 (80)
T 2k9p_A 45 SRKTPIFIINQVSLFLII--LHSALY 68 (80)
T ss_dssp CSCCCHHHHHHHHHHHHH--HHHHHH
T ss_pred cccChhhHHHHHHHHHHH--HHHHHH
Confidence 567999999999888874 666653
No 6
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} SCOP: a.227.1.1 PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Probab=4.67 E-value=4.1e+02 Score=22.85 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 027197 36 NRLVSTTHAALAVTLTSL 53 (226)
Q Consensus 36 ~r~vS~iHa~v~~~~~~~ 53 (226)
.|++|.+||.+++=++.-
T Consensus 185 yrLISGlHaSIs~Hl~~~ 202 (388)
T 3m31_A 185 YRLVSGFHASIGTHLSKE 202 (388)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 689999999999988863
No 7
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=4.67 E-value=4e+02 Score=16.34 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027197 204 FWFFKIARMVKYKLAKWT 221 (226)
Q Consensus 204 ~Wf~~i~~~~~k~~~~~~ 221 (226)
-|.++|.+.......+|+
T Consensus 65 ~wl~~i~~n~~~d~~R~~ 82 (87)
T 1h3l_A 65 AWLYRILTNTFINSYRKK 82 (87)
T ss_dssp HHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 366777775444443333
No 8
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=4.45 E-value=2.6e+02 Score=15.83 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhccccccc
Q 027197 208 KIARMVKYKLAKWTSKKA 225 (226)
Q Consensus 208 ~i~~~~~k~~~~~~~~~~ 225 (226)
..+|.+.|.+++.+.+.+
T Consensus 12 ~tLk~AFK~Ls~sqD~eA 29 (42)
T 3k6g_D 12 MTLKAAFKTLSGAQDSEA 29 (42)
T ss_dssp HHHHHHHHHHHCCTTHHH
T ss_pred HHHHHHHHHhccCCCcHH
Confidence 456788888887776654
No 9
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=3.92 E-value=1.3e+03 Score=19.58 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccCchhhhHHHHHHHHHHHHHHH
Q 027197 10 VVAVVSWTAAFLFIRKIFPNRSFDFCNRLVSTTHAALAVTLTSL 53 (226)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~w~~r~vS~iHa~v~~~~~~~ 53 (226)
..|.++..+++.-++. ..+||++.+..|..
T Consensus 235 ~tG~lil~gi~i~S~~--------------~al~Al~Gs~~g~~ 264 (384)
T 4ezc_A 235 WTGGIFLGAILLSSPL--------------MCLHAAIGSLLGII 264 (384)
T ss_dssp HHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCHH--------------HHHHHHHHHHHHHH
Confidence 3555666666655433 56678777777764
No 10
>3bya_B Glutamate [NMDA] receptor subunit zeta-1 peptide; calmodulin, EF hand motif, NR1, N-methyl-D-aspartate recepto glutamate, central nervous system; 1.85A {Homo sapiens} PDB: 2hqw_B
Probab=3.86 E-value=5.3e+02 Score=12.69 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=8.2
Q ss_pred HHHHHHhhccccccc
Q 027197 211 RMVKYKLAKWTSKKA 225 (226)
Q Consensus 211 ~~~~k~~~~~~~~~~ 225 (226)
..+...+++++.+|+
T Consensus 11 tslass~krrrsskv 25 (26)
T 3bya_B 11 STLASSFKRRRSSKX 25 (26)
T ss_pred HHHHHHHHHhhhccc
Confidence 344445556666665
Done!