Query 027197
Match_columns 226
No_of_seqs 128 out of 791
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 10:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027197.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027197hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54k_ f.23.5.1 (K:) Mitochon 68.0 5.5 0.0004 22.2 4.5 24 2-25 6-29 (49)
2 d2e74d2 f.23.12.1 (D:12-45) IS 4.8 2.3E+02 0.017 13.8 3.2 17 199-215 6-22 (34)
3 d1or7a2 a.177.1.1 (A:-1-111) S 4.7 1.8E+02 0.013 17.7 2.0 7 205-211 75-81 (113)
4 d1rp4a_ a.227.1.1 (A:) Endopla 3.4 2.8E+02 0.021 21.7 2.5 18 36-53 171-188 (374)
5 d2i5nh2 f.23.10.1 (H:1-36) Pho 3.2 3.3E+02 0.024 13.0 3.3 23 2-24 11-33 (36)
6 d1mkma1 a.4.5.33 (A:1-75) Tran 3.0 3E+02 0.022 15.5 1.8 27 135-161 17-43 (75)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.8 4.3E+02 0.031 15.4 2.4 18 74-91 47-64 (75)
8 d1q90a3 f.23.23.1 (A:248-292) 2.7 4.6E+02 0.034 13.6 2.2 7 217-223 24-30 (45)
9 d2vqca1 a.4.5.78 (A:4-73) F-11 2.6 3.6E+02 0.026 15.0 1.7 16 207-222 5-20 (70)
10 d2oara1 f.16.1.1 (A:10-118) Ga 2.5 6.9E+02 0.05 15.4 3.6 12 211-222 82-93 (109)
No 1
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=67.97 E-value=5.5 Score=22.25 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIRK 25 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (226)
|+|--.+++.|..||.+++..+-.
T Consensus 6 dKYGn~vL~~Ga~fc~avW~yv~T 29 (49)
T d1v54k_ 6 DKYGNAVLASGATFCVAVWVYMAT 29 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcEEEecccchhhhhhhheee
Confidence 688888999999999999887753
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.85 E-value=2.3e+02 Score=13.75 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027197 199 QLVSAFWFFKIARMVKY 215 (226)
Q Consensus 199 ~~ln~~Wf~~i~~~~~k 215 (226)
++||+.||-.+...+..
T Consensus 6 qfmnlltfgt~tg~alg 22 (34)
T d2e74d2 6 QFMNLLAFGTVTGVALG 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHh
Confidence 56788887776554433
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=4.70 E-value=1.8e+02 Score=17.71 Aligned_cols=7 Identities=43% Similarity=1.350 Sum_probs=4.9
Q ss_pred HHHHHHH
Q 027197 205 WFFKIAR 211 (226)
Q Consensus 205 Wf~~i~~ 211 (226)
|+++|.+
T Consensus 75 wl~~I~~ 81 (113)
T d1or7a2 75 WLYRIAV 81 (113)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6677776
No 4
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.40 E-value=2.8e+02 Score=21.66 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 027197 36 NRLVSTTHAALAVTLTSL 53 (226)
Q Consensus 36 ~r~vS~iHa~v~~~~~~~ 53 (226)
.|++|.+||.+++=++.-
T Consensus 171 yrlISGlHsSIs~Hl~~~ 188 (374)
T d1rp4a_ 171 YRLVSGFHASIGTHLSKE 188 (374)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 589999999998877753
No 5
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.20 E-value=3.3e+02 Score=13.04 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 027197 2 DYYILKLVVVAVVSWTAAFLFIR 24 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (226)
|.-++-|-.-.+.+|+.+-+..|
T Consensus 11 diaqlvwyaqwlviwtvvllylr 33 (36)
T d2i5nh2 11 DIAQLVWYAQWLVIWTVVLLYLR 33 (36)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455566666778887766654
No 6
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.99 E-value=3e+02 Score=15.52 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=20.2
Q ss_pred cchhhhHHHHHHHhCCCCChhHHHHHH
Q 027197 135 SSPFLHCREMLKELGYRDTGLNLTADV 161 (226)
Q Consensus 135 Stpfl~~r~~l~~~g~~~s~~~~~n~~ 161 (226)
+.+.+..+.+-+..|...+..+++..-
T Consensus 17 ~~~~~s~~eia~~~~~~~st~~rll~t 43 (75)
T d1mkma1 17 NPGDVSVSEIAEKFNMSVSNAYKYMVV 43 (75)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 346688899999999888777765543
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.85 E-value=4.3e+02 Score=15.38 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027197 74 MQTLAWTLAYLIYDLVCC 91 (226)
Q Consensus 74 ~~~~~is~GYfl~Dl~~~ 91 (226)
....-+.++|.+||-..-
T Consensus 47 ~v~PPfi~~Y~iy~W~~~ 64 (75)
T d1ppjg_ 47 RVAPPFVAFYLVYTWGTQ 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHH
Confidence 345577899999987643
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.67 E-value=4.6e+02 Score=13.64 Aligned_cols=7 Identities=29% Similarity=0.084 Sum_probs=2.7
Q ss_pred hhccccc
Q 027197 217 LAKWTSK 223 (226)
Q Consensus 217 ~~~~~~~ 223 (226)
++||+-+
T Consensus 24 LKKKQfE 30 (45)
T d1q90a3 24 LKKKQFE 30 (45)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 9
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=2.59 E-value=3.6e+02 Score=14.96 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhcccc
Q 027197 207 FKIARMVKYKLAKWTS 222 (226)
Q Consensus 207 ~~i~~~~~k~~~~~~~ 222 (226)
|+|...+.|.+.+|++
T Consensus 5 y~maeimykil~~k~e 20 (70)
T d2vqca1 5 YKMAEIMYKILEKKGE 20 (70)
T ss_dssp HHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHcCc
Confidence 5677777777766654
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.54 E-value=6.9e+02 Score=15.36 Aligned_cols=12 Identities=17% Similarity=-0.058 Sum_probs=5.7
Q ss_pred HHHHHHhhcccc
Q 027197 211 RMVKYKLAKWTS 222 (226)
Q Consensus 211 ~~~~k~~~~~~~ 222 (226)
.....+++||++
T Consensus 82 vk~~n~~~~k~~ 93 (109)
T d2oara1 82 VLPYNTLRKKGE 93 (109)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHhhcCC
Confidence 334455554444
Done!