Query 027198
Match_columns 226
No_of_seqs 95 out of 97
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2py8_A Hypothetical protein RB 100.0 1.1E-49 3.9E-54 329.7 13.3 116 108-224 6-128 (147)
2 3ka1_A RBCX protein; chaperone 100.0 1E-45 3.6E-50 299.5 11.9 110 109-219 7-116 (126)
3 2peq_A ORF134; helix bundle, p 100.0 2.8E-45 9.6E-50 299.6 12.9 110 108-218 6-115 (134)
4 3hyb_A RBCX protein; rubisco, 100.0 8.2E-44 2.8E-48 296.3 10.8 106 106-213 24-129 (155)
5 2l9d_A Uncharacterized protein 58.2 2.1 7.1E-05 33.9 -0.0 24 130-153 68-91 (108)
6 3zta_A MTR, anti-sigma-factor 42.0 67 0.0023 25.7 6.4 48 156-205 88-142 (146)
7 3or8_A Transcription elongatio 37.6 33 0.0011 29.1 4.2 69 32-124 27-96 (197)
8 3kat_A Nacht, LRR and PYD doma 30.0 39 0.0013 26.0 3.1 55 119-175 47-101 (107)
9 4b4s_A BCL-2-like protein 10; 26.4 60 0.002 26.8 3.9 43 104-146 2-62 (175)
10 2w9y_A CE-FAR-7, fatty acid/re 25.5 1.4E+02 0.0048 24.2 5.8 58 128-185 20-78 (140)
11 2kfd_A PRE-mRNA-processing pro 24.6 15 0.00052 27.0 -0.1 30 105-134 32-64 (69)
12 2p1h_A APAF-1, apoptotic prote 21.8 76 0.0026 22.4 3.2 37 135-171 50-87 (94)
13 4fhr_B Flagellar motor switch 20.9 1.7E+02 0.0058 24.6 5.7 55 111-165 88-144 (216)
No 1
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=100.00 E-value=1.1e-49 Score=329.68 Aligned_cols=116 Identities=24% Similarity=0.383 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHh
Q 027198 108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMITRLHLYGKWVKK 187 (226)
Q Consensus 108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~eLAlRIMeVRehla~EW~~~ 187 (226)
.|+|||++|++||||+||||||+||+|||||.|.||++|+++|||+|||+||++||+|+|+||+|||+||+|||++|.|+
T Consensus 6 ~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlRIMeVR~~ya~e~fe~ 85 (147)
T 2py8_A 6 IAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVREDIAESVLDF 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh-------hccCCCCCCCCCC
Q 027198 188 CDHAQMYKAISDENLELMRERLIE-------TVIWPSDDSNTEK 224 (226)
Q Consensus 188 l~~~m~~~~I~e~N~elMRe~L~e-------T~~~psd~~n~~~ 224 (226)
++ +|++++|+++|+++||+||.. +++||||++|+||
T Consensus 86 l~-em~~~~I~~~N~elmRq~leR~t~~~~e~~~~psd~~~~~~ 128 (147)
T 2py8_A 86 LP-GMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGES 128 (147)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCCccc
Confidence 87 999999999999999977665 4499999999987
No 2
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=100.00 E-value=1e-45 Score=299.54 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHhc
Q 027198 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMITRLHLYGKWVKKC 188 (226)
Q Consensus 109 f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~eLAlRIMeVRehla~EW~~~l 188 (226)
+.|||++|++||||+|||||++||+||||+.|.||+||+++|||+|||+||++||+|+|+||+|||+||+|||++|.+|+
T Consensus 7 a~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~~~LA~RIM~vR~hla~~v~d~l 86 (126)
T 3ka1_A 7 AKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVREHLAEMVADYL 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 027198 189 DHAQMYKAISDENLELMRERLIETVIWPSDD 219 (226)
Q Consensus 189 ~~~m~~~~I~e~N~elMRe~L~eT~~~psd~ 219 (226)
+ +|++++|+++|+++||+||.......+.+
T Consensus 87 ~-eMv~~~I~q~N~e~~Rq~Ler~t~~~~~~ 116 (126)
T 3ka1_A 87 P-EMLRAGIQQANLQQRAQQLERMTQVSEAN 116 (126)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8 99999999999999999997766443333
No 3
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=100.00 E-value=2.8e-45 Score=299.59 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHh
Q 027198 108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMITRLHLYGKWVKK 187 (226)
Q Consensus 108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~eLAlRIMeVRehla~EW~~~ 187 (226)
-|+|||++|++||||||||||++||+|||||.|.||++|+++|||+|||+||++||+|+|+||+|||+||+|||++|.++
T Consensus 6 ~~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~~~LAlRIM~VRe~ya~e~~e~ 85 (134)
T 2peq_A 6 VAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEF 85 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027198 188 CDHAQMYKAISDENLELMRERLIETVIWPSD 218 (226)
Q Consensus 188 l~~~m~~~~I~e~N~elMRe~L~eT~~~psd 218 (226)
++ +|++++|+++|+++||+||.+.+..-..
T Consensus 86 l~-~m~~~~I~~~N~~lmR~~ler~t~~~~~ 115 (134)
T 2peq_A 86 LP-EMVLSQIKQSNGNHRRSLLERLTQVDSS 115 (134)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 87 9999999999999999999998754433
No 4
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=100.00 E-value=8.2e-44 Score=296.28 Aligned_cols=106 Identities=36% Similarity=0.491 Sum_probs=98.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Q 027198 106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMITRLHLYGKWV 185 (226)
Q Consensus 106 ed~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~eLAlRIMeVRehla~EW~ 185 (226)
.+-+.|||++|++||||||||||++||+||||+.|.||++|++ |||+|||+||++||+|+|+||+|||+||+|||+++.
T Consensus 24 k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~~~LA~RIM~VRehlae~v~ 102 (155)
T 3hyb_A 24 KQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIMTVREHIAEEIA 102 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999 999999999999999999999999999999999888
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 027198 186 KKCDHAQMYKAISDENLELMRERLIETV 213 (226)
Q Consensus 186 ~~l~~~m~~~~I~e~N~elMRe~L~eT~ 213 (226)
+|++ +|++++|+++|+++||+||.+..
T Consensus 103 eflp-eMv~~~IqqaN~el~Rq~LeR~t 129 (155)
T 3hyb_A 103 EFLP-EMVVTGIQQANMEKRRQHLERMT 129 (155)
T ss_dssp GGHH-HHHHHHHHHHHHHHHHHCC----
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8886 99999999999999999996644
No 5
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=58.23 E-value=2.1 Score=33.87 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHhhccCcchHHHHHhhhhcCCCC
Q 027198 130 HQLYEMNPTQYMWFYNFVATNKPG 153 (226)
Q Consensus 130 ~QL~EtNP~~y~WL~~Fls~npl~ 153 (226)
.+|++.||.+|..+++|...|.++
T Consensus 68 ~~L~~~~P~af~fvm~FA~dN~L~ 91 (108)
T 2l9d_A 68 LKLKDTNPEGFNQLMHFATENQLN 91 (108)
T ss_dssp THHHHHCHHHHHHHHHHHHHHTEE
T ss_pred cHhhhcChHHHHHHHHHHHhCCce
Confidence 578999999999999999999985
No 6
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=42.02 E-value=67 Score=25.75 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHhccC---hhhHHHHHHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHH
Q 027198 156 KHFIRILGKVK---QDLAERVMITRLHLYGKWVKKCDHAQ----MYKAISDENLELM 205 (226)
Q Consensus 156 D~fL~aLmrE~---~eLAlRIMeVRehla~EW~~~l~~~m----~~~~I~e~N~elM 205 (226)
|.|+.-+-.+- +.-|.-|-+||.|+++.-- ||- .| -++-|++.|-.+|
T Consensus 88 dsfisvireqyhdlqaaasyittvrdhifkgts-fll-kmalqtqreviqkqnealm 142 (146)
T 3zta_A 88 DSFISVIREQYHDLQAAASYITTVRDHIFKGTS-FLL-KMALQTQREVIQKQNEALM 142 (146)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHHHHHHHH
Confidence 44554433322 4558899999999999533 332 22 3567888888776
No 7
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=37.57 E-value=33 Score=29.06 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=45.4
Q ss_pred CCcceEEeecccccchhheecccccccccccccccchhhhhhhhhhccccccccc-ccccCCCccEeecCCCCCcccchH
Q 027198 32 GGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRK-RKQRRDRRPVIVNEVGGQYEDSFE 110 (226)
Q Consensus 32 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~v~~~~r~-~~~~~~~~l~i~~~~GGq~ed~f~ 110 (226)
.-||++++-|+-|. -||.| .|+....++.++--.-..+ ....=++.|+| ||+ .|+
T Consensus 27 ~~Ge~iIRPSSkg~-dhLtv----------------TwKv~d~v~qHidI~E~~K~~~~slG~~L~i----~~~---~y~ 82 (197)
T 3or8_A 27 ERGDFVIRQSSRGD-DHLAI----------------TWKLDKDLFQHVDIQELEKENPLALGKVLVV----EGQ---RYH 82 (197)
T ss_dssp CTTCEEEEECSSCT-TEEEE----------------EEEEETTEEEEEEEEEESCSSTTSCCSEEEE----TTE---EES
T ss_pred CCCCEEEeeCCCCC-CcEEE----------------EEEECCCcEEEEEEEEcCCccccccCceEEE----CCe---EEC
Confidence 45999999988887 88876 6766666666653332211 11223556666 443 688
Q ss_pred HHHHHHHHHHHHHH
Q 027198 111 DVKKQIQNYFTYKA 124 (226)
Q Consensus 111 DtAk~L~~yFTY~A 124 (226)
|-.+.+.+|..-.|
T Consensus 83 DLDElI~~~V~pm~ 96 (197)
T 3or8_A 83 DLDQIIVEYLQNKI 96 (197)
T ss_dssp SHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999987765
No 8
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=30.05 E-value=39 Score=26.02 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccChhhHHHHHH
Q 027198 119 YFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQDLAERVMI 175 (226)
Q Consensus 119 yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~eLAlRIMe 175 (226)
+||-.-.-+|.++ .|++....-|.+++..--..--+.|+..|-..+|-|+.-+++
T Consensus 47 VLteee~e~I~ae--~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e~dp~L~~~L~~ 101 (107)
T 3kat_A 47 VLSQEQYERVLAE--NTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWE 101 (107)
T ss_dssp TSCHHHHHHHHHC--CSHHHHHHHHHHGGGGCCTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hCCHHHHHHHHhC--CCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 4455555555553 688899999999998777788899999999889999888765
No 9
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=26.37 E-value=60 Score=26.81 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=31.2
Q ss_pred Ccccch-HHHHHHHHHHHHHHH-----------------HHHHHHHhhccCcchHHHHHhh
Q 027198 104 QYEDSF-EDVKKQIQNYFTYKA-----------------VRTVLHQLYEMNPTQYMWFYNF 146 (226)
Q Consensus 104 q~ed~f-~DtAk~L~~yFTY~A-----------------VRtVL~QL~EtNP~~y~WL~~F 146 (226)
-++|.. ++|...+.+||.|++ +|-+-++|++..+..|.-+.++
T Consensus 2 ~~~d~l~~~t~~L~~DYl~y~~r~p~~p~~~p~s~~aa~LR~va~ele~~~~~~f~~~~~~ 62 (175)
T 4b4s_A 2 GSADPLRERTELLLADYLGYSAREPGTPEPAPSTPEAAVLRSAAARLRQIHRSFFSAYLGY 62 (175)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSHHHHHHHHHHHHHHHHTHHHHHTTTTC
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355665 458888889998876 7888889998888877666665
No 10
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=25.53 E-value=1.4e+02 Score=24.23 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=38.9
Q ss_pred HHHHhhccCcchHHHHHhhhhcCC-CCCHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Q 027198 128 VLHQLYEMNPTQYMWFYNFVATNK-PGDGKHFIRILGKVKQDLAERVMITRLHLYGKWV 185 (226)
Q Consensus 128 VL~QL~EtNP~~y~WL~~Fls~np-l~DGD~fL~aLmrE~~eLAlRIMeVRehla~EW~ 185 (226)
|..-+...++..=.=|.++..++. -+.=+++|++|=..+|+|..|++.+|.-+-.+.+
T Consensus 20 v~~f~~~Lt~eeK~~Lkev~kn~~~f~~e~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~ 78 (140)
T 2w9y_A 20 QLEFSSSITADEKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRLATVLEGNKKRLD 78 (140)
T ss_dssp HHHHHHHCCTTTHHHHHHHHTTCCC----TTHHHHHHHHCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 445556666665555666655432 2467889999999999999999999995555433
No 11
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=24.55 E-value=15 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=24.8
Q ss_pred cccchHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 027198 105 YEDSFEDVKKQIQNYFTYKAV---RTVLHQLYE 134 (226)
Q Consensus 105 ~ed~f~DtAk~L~~yFTY~AV---RtVL~QL~E 134 (226)
-|++|+||.+.|.+|.-|+|+ --|..||.+
T Consensus 32 kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~ 64 (69)
T 2kfd_A 32 KPSTWDLASKELGESLEYKALGDEDNIRRQIFE 64 (69)
T ss_dssp CCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHH
T ss_pred CCccHHHHHHHHccCHHHHHhhccHHHHHHHHH
Confidence 478999999999999999998 456777543
No 12
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.76 E-value=76 Score=22.44 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=24.1
Q ss_pred cCcchHHHHHhhhhcCCCCCHHHHHHHHhccCh-hhHH
Q 027198 135 MNPTQYMWFYNFVATNKPGDGKHFIRILGKVKQ-DLAE 171 (226)
Q Consensus 135 tNP~~y~WL~~Fls~npl~DGD~fL~aLmrE~~-eLAl 171 (226)
|+...+.-|.+.+.+-..+--+.|+.+|-..++ .||.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 445667777777765445556777787777665 5554
No 13
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=20.91 E-value=1.7e+02 Score=24.58 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhh--hcCCCCCHHHHHHHHhcc
Q 027198 111 DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFV--ATNKPGDGKHFIRILGKV 165 (226)
Q Consensus 111 DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fl--s~npl~DGD~fL~aLmrE 165 (226)
+++-.+.|++.--.-..++..|++.||..+.-+.+.+ =++=++=-|.-+..|+++
T Consensus 88 ~~~A~IlN~~~~~~e~~il~~L~~~d~ela~~I~~~mF~Fedl~~ld~~~iq~llr~ 144 (216)
T 4fhr_B 88 DTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLRE 144 (216)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCHHHHHHHHHHhcCHHHHhCCCHHHHHHHHHh
Confidence 4455566777777778899999999998887766532 222233345677777776
Done!