BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027199
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW19|FACE2_ARATH CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2
Length = 311
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/223 (65%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
Query: 4 WQAAVFPLFLTSLMYAGSMVLKSLLLLNSWTTDMNNSGGLSLGCIKIVLWSLRAQMFAVA 63
WQ V+PL LTSL+YAGS+VLK LL SW N G S I+ ++ A + A
Sbjct: 91 WQGVVYPLLLTSLVYAGSLVLKLFTLLESWKE--NGGGCSSFNYIRSFFQTIPASVLTSA 148
Query: 64 SNILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSA 123
SN+ WRNF+VAP+TEELVFR+CMIPLLLC GF+INT IFLCPV FSLAHLNH E+Y
Sbjct: 149 SNVSVWRNFIVAPVTEELVFRSCMIPLLLCAGFRINTAIFLCPVLFSLAHLNHFREMYIR 208
Query: 124 QNFSLLKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFARNRG 183
N S L+AS+IVGLQLGYTV+FG YASFLFIRTGHLAAPL AHIFCNYMGLPVL+A +G
Sbjct: 209 HNRSYLRASLIVGLQLGYTVIFGAYASFLFIRTGHLAAPLFAHIFCNYMGLPVLYANGKG 268
Query: 184 LVSVAFVAGMVAFLWLLFPITRPDLYNDRTNNCRCLHGYCSWN 226
LVS AF+ G+V F+ LLFP+T+P +YND TN+C C GYC WN
Sbjct: 269 LVSAAFLGGVVGFVLLLFPLTKPLMYNDSTNDCPCWLGYCLWN 311
>sp|Q9U1H8|FACE2_DROME CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3
Length = 302
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 49/225 (21%)
Query: 4 WQAAVFPLFLTSLMYAGSMVL-------KSLLLLNSWTTDMNNSGGLSLGCIKIVLWSLR 56
WQA V P LT L++ G + + +S L+ W G ++W
Sbjct: 104 WQAVVIPYSLTVLLFLGPIFVNMQNESVRSYFDLDYWR-----------GSFGSIIWV-- 150
Query: 57 AQMFAVASNILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNH 116
RN V+APL+EE VFRACM+PL+L F +F+ P+FF +AHL+H
Sbjct: 151 -------------RNHVIAPLSEEFVFRACMMPLIL-QSFSPLVAVFITPLFFGVAHLHH 196
Query: 117 LMEIYSAQNFSL---LKASMIVGL-QLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYM 172
+ A+ SL L ++++GL Q YT +FG+Y++FLF RTGH+ AP++ H FCN+M
Sbjct: 197 I-----AERLSLGVELSTALLIGLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCNHM 251
Query: 173 GLPVLFAR------NRGLVSVAFVAGMVAFLWLLFPITRPDLYND 211
GLP L R + + ++AG V +++L+ T P +Y++
Sbjct: 252 GLPDLQDLWQQDLWRRVVAIILYLAGFVGWMFLVPLATDPSIYDN 296
>sp|P57791|FACE2_MOUSE CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1
Length = 329
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 70 RNFVVAPLTEELVFRACMIPLLL-CGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSL 128
RN V+APLTEELVFRACM+P+L C G + +F CP+FF +AH +H++E + S+
Sbjct: 166 RNQVIAPLTEELVFRACMLPMLAPCTG--LGPAVFTCPLFFGVAHFHHIIEQLRFRQSSV 223
Query: 129 LKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFA 179
+ Q YT VFG Y +FLFIRTGHL P++ H FCNYMG P + A
Sbjct: 224 GSIFVSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCA 274
>sp|Q9Y256|FACE2_HUMAN CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1
Length = 329
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 70 RNFVVAPLTEELVFRACMIPLLL-CGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSL 128
RN V+APLTEELVFRACM+P+L C G + +F CP+FF +AH +H++E + S+
Sbjct: 166 RNQVIAPLTEELVFRACMLPMLAPCMG--LGPAVFTCPLFFGVAHFHHIIEQLRFRQSSV 223
Query: 129 LKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFA 179
+ Q YT VFG Y +FLFIRTGHL P++ H FCNYMG P + A
Sbjct: 224 GNIFLSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCA 274
>sp|O94448|RCE1_SCHPO Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1
Length = 271
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 64 SNILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSA 123
SN +AWRN ++ PL+EEL FR C++P+ G+ IIF+ P+ F +AH++H E A
Sbjct: 111 SNAIAWRNIIIGPLSEELTFRCCIVPICEAAGWSRLKIIFVAPLLFGMAHIHHTYEFLLA 170
Query: 124 QNFSLLKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFAR--N 181
+ + A++ +Q YT VFGWY + LF+ T L + H FCN MGLP L+ + N
Sbjct: 171 YPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFCNSMGLPTLYGKIGN 230
Query: 182 RGLVSVAF 189
R + +
Sbjct: 231 RNQTRIYY 238
>sp|B0BMW8|FACE2_RAT CAAX prenyl protease 2 OS=Rattus norvegicus GN=Rce1 PE=2 SV=1
Length = 308
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 24/111 (21%)
Query: 70 RNFVVAPLTEELVFRACMIPLLL-CGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSL 128
RN V+APLTEELVFRACM+P+L C G + +F CP+FF +AH +H++E + S+
Sbjct: 166 RNQVIAPLTEELVFRACMLPMLAPCTG--LGPAVFTCPLFFGVAHFHHIIEQLRFRQSSV 223
Query: 129 LKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFA 179
+F+ GHL P++ H FCNYMG P + A
Sbjct: 224 ---------------------GSIFLSAGHLIGPVLCHSFCNYMGFPAVCA 253
>sp|A6H7A0|FACE2_BOVIN CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1
Length = 308
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 24/111 (21%)
Query: 70 RNFVVAPLTEELVFRACMIPLLL-CGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSL 128
RN V+APLTEELVFRACM+P+L C G + +F CP+FF +AH +H+ E + S+
Sbjct: 166 RNQVIAPLTEELVFRACMLPMLAPCTG--LGPAVFTCPLFFGVAHFHHIFEQLRFRQSSV 223
Query: 129 LKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFA 179
+F+ GHL P++ H FCNYMG P + A
Sbjct: 224 ---------------------GSIFLSAGHLIGPVLCHSFCNYMGFPAVCA 253
>sp|Q03530|RCE1_YEAST CAAX prenyl protease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RCE1 PE=1 SV=1
Length = 315
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 65 NILAWRNFVVAPLTEELVFRACMIP----LLLCGGFKINTIIFLCPVFFSLAHLNHLMEI 120
NI ++RNF+ AP+TEE+ + + ++ L+ + + +FF LAH +H E
Sbjct: 142 NIWSFRNFIFAPITEEIFYTSMLLTTYLNLIPHSQLSYQQLFWQPSLFFGLAHAHHAYEQ 201
Query: 121 YSAQNFSLLKASMIVGLQLGYTVVFGWYASFLFIRT-GHLAAPLIAHIFCNYMGLPVLFA 179
+ + + + Q+ YT +FG F+F+RT G+L +I H CN MG P
Sbjct: 202 LQEGSMTTVSILLTTCFQILYTTLFGGLTKFVFVRTGGNLWCCIILHALCNIMGFPGPSR 261
Query: 180 RNRGLVSVAFVAGMVAFL 197
N V AG ++ L
Sbjct: 262 LNLHFTVVDKKAGRISKL 279
>sp|Q7LL00|YQJC_SCHPO Uncharacterized oligopeptide transporter C1840.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1840.12 PE=3 SV=2
Length = 791
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 13 LTSLMYAGSMVLKSLLLLNSWTTD----MNNS----GGLSLGCIKIV--LWSLRAQMFAV 62
TS ++ +VL L N W M NS G S K+V W L Q +
Sbjct: 352 FTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYTVSGKSYDAQKVVDSKWELVTQKYQE 411
Query: 63 ASNILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVF-FSLAHLNHLMEIY 121
S ++ F++ F + MI L F + I +C VF +S H L++ Y
Sbjct: 412 YSPVMLPIAFIINIALSLGAFSSMMISFFL--RFPTDVIQPICHVFKYSDIH-TKLLKKY 468
Query: 122 SAQNFSLLKASMIVGLQLGYTVVFGWYA----SFLFIRTGHLAAPLIAHIFCNYMGLPVL 177
++ AS+IV L LG+ GW+ S+ F+ + + A L Y+ L ++
Sbjct: 469 KRVHWGFYLASIIVSLGLGFAFTEGWHDIQIRSYGFVVSMVIGAAL-------YIPLSLI 521
Query: 178 FARNRGLVSVAFVAGMVAFLWL 199
+R+ +S+ +VA W
Sbjct: 522 ESRSSFTISMQAFFEIVAAFWF 543
>sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1
Length = 1065
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 67 LAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNF 126
+A+ N +V P+T + CM+P F + T F+ P +LA L ++ F
Sbjct: 838 IAYINTIVYPITSIPLLAYCMLP-----AFCLITNTFIIPEISNLASLCFMLL------F 886
Query: 127 SLLKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAPLIAHIFCNYMGLPVLFA 179
+ + AS I+ L+ + W+ + F G + AH+F + GL +FA
Sbjct: 887 ASIYASAILELKWSDVALEDWWRNEQFWVIGGTS----AHLFAVFQGLLKVFA 935
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.142 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,802,617
Number of Sequences: 539616
Number of extensions: 2950042
Number of successful extensions: 10511
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10471
Number of HSP's gapped (non-prelim): 43
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 59 (27.3 bits)