Query 027199
Match_columns 226
No_of_seqs 252 out of 1152
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4130 Prenyl protein proteas 100.0 6.7E-48 1.5E-52 335.9 18.0 192 3-212 84-281 (291)
2 PF02517 Abi: CAAX protease se 99.7 1.6E-17 3.4E-22 123.6 9.9 87 66-172 5-91 (91)
3 TIGR03008 pepcterm_CAAX CAAX p 99.6 5.9E-15 1.3E-19 129.0 9.7 81 69-172 121-208 (222)
4 COG1266 Predicted metal-depend 99.6 2.1E-14 4.5E-19 120.5 10.1 89 66-171 124-212 (226)
5 COG4449 Predicted protease of 96.7 0.00087 1.9E-08 65.1 2.1 97 68-170 712-810 (827)
6 PF13367 PrsW-protease: Protea 86.5 18 0.00038 30.2 11.8 108 68-175 43-174 (191)
7 PHA02758 hypothetical protein; 79.4 9.2 0.0002 34.3 7.4 49 153-202 268-319 (321)
8 PF10086 DUF2324: Putative mem 71.3 53 0.0012 28.8 10.1 43 68-115 64-106 (223)
9 PF10287 DUF2401: Putative TOS 33.2 25 0.00053 31.5 1.5 21 202-224 132-152 (235)
10 PF12662 cEGF: Complement Clr- 24.1 30 0.00065 20.1 0.3 8 215-222 3-10 (24)
11 TIGR02115 potass_kdpF K+-trans 22.9 74 0.0016 18.9 1.8 23 188-210 3-25 (26)
12 PF09064 Tme5_EGF_like: Thromb 22.4 44 0.00095 21.2 0.8 12 211-222 15-26 (34)
No 1
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-48 Score=335.87 Aligned_cols=192 Identities=36% Similarity=0.640 Sum_probs=169.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccchhHHhhhHHHHHHHHhhhhHHHhhhhhhhhhHHHHH
Q 027199 3 QWQAAVFPLFLTSLMYAGSMVLKSLLLLNSWTTDMNNSGGLSLGCIKIVLWSLRAQMFAVASNILAWRNFVVAPLTEELV 82 (226)
Q Consensus 3 ~~~a~~~pl~LT~~Lf~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~rn~IvaPi~EElv 82 (226)
+++|++.|+++|+++|+||+++-.+.. + +.+ +++..+|| ++++.|++||||.|+||++||++
T Consensus 84 ~~~avlk~lllt~tLflGPl~~v~m~~-------~----~~r-~~fil~~~------~~cf~nii~~RN~iiaPLtEElv 145 (291)
T KOG4130|consen 84 FVKAVLKPLLLTLTLFLGPLLDVVMYH-------L----LNR-KSFILEDW------YHCFLNIIWFRNFIIAPLTEELV 145 (291)
T ss_pred hHHHHHHHHHHHHHHHhhhhhheeeec-------c----ccc-hhccHHHH------HHHHHHHHHHHhhhhccchHHHH
Confidence 689999999999999999999765421 1 111 24557788 88999999999999999999999
Q ss_pred HHHhhHHHHHcCCCCcchhHHHHHHHHHHhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHH
Q 027199 83 FRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVFGWYASFLFIRTGHLAAP 162 (226)
Q Consensus 83 FRg~ll~~l~~~~~~~~~ai~lssllFglaH~~h~~e~~~~~g~~~~~al~~~~~Q~~yt~lfG~~~a~ly~rTgsL~~~ 162 (226)
||+||+|..+...++..++++++|++||+||.||++|+...+..+..++++.+.+||.||++||+|.+++|+||||+|+|
T Consensus 146 fracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaflF~rTghl~~~ 225 (291)
T KOG4130|consen 146 FRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAFLFVRTGHLWCP 225 (291)
T ss_pred HHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHH
Confidence 99999999986668999999999999999999999999865557788899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhh-----cchhH-HHHHHHHHHHHHHHHHhcCCCCccccCC
Q 027199 163 LIAHIFCNYMGLPVLFA-----RNRGL-VSVAFVAGMVAFLWLLFPITRPDLYNDR 212 (226)
Q Consensus 163 il~H~~~N~~Glp~~~~-----~~~~~-~~~~~v~G~v~f~~lL~~lt~~~~y~~~ 212 (226)
|++|++||.||+|++.+ +++++ ..+.|..|+..|+.++.+.|+|+.|++.
T Consensus 226 iLvHAfCN~MGfP~l~~~~~~~~~rri~a~v~~llgv~~fllllgl~t~~~~~d~l 281 (291)
T KOG4130|consen 226 ILVHAFCNIMGFPNLHFTVVDKKARRISALVSYLLGVYFFLLLLGLITDPDTYDTL 281 (291)
T ss_pred HHHHHHHhhcCChhHHHHHcCcccchHHHHHHHHHHHHHHHHHhccccCchhhccC
Confidence 99999999999999976 23333 3567999999999999999999999885
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.74 E-value=1.6e-17 Score=123.58 Aligned_cols=87 Identities=34% Similarity=0.579 Sum_probs=76.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHhhHHHHHcCCCCcchhHHHHHHHHHHhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027199 66 ILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVF 145 (226)
Q Consensus 66 ~~~~rn~IvaPi~EElvFRg~ll~~l~~~~~~~~~ai~lssllFglaH~~h~~e~~~~~g~~~~~al~~~~~Q~~yt~lf 145 (226)
+..+...+++|+.||++|||.+++.+.+ +.++..++++|+++||+.|... ..++.+++++
T Consensus 5 ~~~~~~~~~~~~~EEl~fRg~l~~~l~~-~~~~~~a~~is~~~f~~~H~~~-------------------~~~~~~~~~~ 64 (91)
T PF02517_consen 5 IFFLVMILIAPIAEELFFRGFLFNRLRR-RFNPWFAILISSLLFALWHLPN-------------------GPQFIYAFLF 64 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHH
Confidence 3456788999999999999999999974 4677899999999999999984 1236788999
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHhhhh
Q 027199 146 GWYASFLFIRTGHLAAPLIAHIFCNYM 172 (226)
Q Consensus 146 G~~~a~ly~rTgsL~~~il~H~~~N~~ 172 (226)
|+.++++|.||||+++++++|+.+|.+
T Consensus 65 g~~~~~~~~~t~sl~~~i~~H~~~n~~ 91 (91)
T PF02517_consen 65 GLLFGYLYLRTGSLWAAIIAHALWNLV 91 (91)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence 999999999999999999999999974
No 3
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.59 E-value=5.9e-15 Score=129.00 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=67.7
Q ss_pred hhhhhhhhhHHHHHHHHhhHHHHHcCCC-------CcchhHHHHHHHHHHhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 027199 69 WRNFVVAPLTEELVFRACMIPLLLCGGF-------KINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGY 141 (226)
Q Consensus 69 ~rn~IvaPi~EElvFRg~ll~~l~~~~~-------~~~~ai~lssllFglaH~~h~~e~~~~~g~~~~~al~~~~~Q~~y 141 (226)
....+++|+.||++|||++++.+.++++ ..+.++++||++||+.|.. ..+
T Consensus 121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-----------------------~~~ 177 (222)
T TIGR03008 121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-----------------------IVA 177 (222)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 3457889999999999999999964222 2457899999999999974 123
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHhhhh
Q 027199 142 TVVFGWYASFLFIRTGHLAAPLIAHIFCNYM 172 (226)
Q Consensus 142 t~lfG~~~a~ly~rTgsL~~~il~H~~~N~~ 172 (226)
+++.|+..+++|.||||++.||++|+.+|..
T Consensus 178 ~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~l 208 (222)
T TIGR03008 178 GLIAGLAYNLLLLRTGSIMACILAHAVTNGL 208 (222)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5677999999999999999999999999985
No 4
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=120.47 Aligned_cols=89 Identities=28% Similarity=0.456 Sum_probs=76.4
Q ss_pred HHHhhhhhhhhhHHHHHHHHhhHHHHHcCCCCcchhHHHHHHHHHHhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027199 66 ILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVF 145 (226)
Q Consensus 66 ~~~~rn~IvaPi~EElvFRg~ll~~l~~~~~~~~~ai~lssllFglaH~~h~~e~~~~~g~~~~~al~~~~~Q~~yt~lf 145 (226)
...+-..+++|+.||++|||.+++.+. ++++...++++||++||+.|.... .. ...+.+++.+
T Consensus 124 ~~~~~~~i~~~l~EEl~fRg~l~~~l~-~~~~~~~a~iissllFal~H~~~~-------~~---------~~~~~~~~~~ 186 (226)
T COG1266 124 LFFLVLLILAPLAEELLFRGYLLGALA-RRFGPLLAIIISSLLFALLHLPNG-------LL---------LLYFLLYFIA 186 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HhcCcHHHHHHHHHHHHHHHhccc-------ch---------HHHHHHHHHH
Confidence 344567889999999999999999986 577888999999999999999831 00 1346788899
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHhhh
Q 027199 146 GWYASFLFIRTGHLAAPLIAHIFCNY 171 (226)
Q Consensus 146 G~~~a~ly~rTgsL~~~il~H~~~N~ 171 (226)
|...+++|.||||++.++..|+.+|.
T Consensus 187 gli~~~~~~~t~~l~~~i~~H~~~N~ 212 (226)
T COG1266 187 GLILGLLYLRTGSLWVPILLHALINL 212 (226)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999999999999996
No 5
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=96.68 E-value=0.00087 Score=65.06 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=70.9
Q ss_pred HhhhhhhhhhHHHHHHHHhhHHHHHcCCCCcchhHHHHH--HHHHHhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027199 68 AWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCP--VFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVF 145 (226)
Q Consensus 68 ~~rn~IvaPi~EElvFRg~ll~~l~~~~~~~~~ai~lss--llFglaH~~h~~e~~~~~g~~~~~al~~~~~Q~~yt~lf 145 (226)
-+|.+++-.+.||++||..++|--. ++..++..+.... ++|-+.|..+...++ ..|.+.. +.-.| +.-|.++
T Consensus 712 iL~vIl~PAl~EElvFRvvLlP~P~-E~r~~W~tl~a~~~l~LfvLyHplnA~T~y-~rg~PvF---f~PiF-L~ltglL 785 (827)
T COG4449 712 ILTVILIPALGEELVFRVVLLPGPG-EGRRPWVTLGAATGLVLFVLYHPLNALTFY-PRGAPVF---FRPIF-LLLTGLL 785 (827)
T ss_pred hhhheehhhccccceeEEEecCCCC-ccccchHhHHHHHHHHHHHHhhhhhhhhcc-ccCCcce---eccHH-HHHHHHH
Confidence 3567778889999999999999765 3434555555444 489999998887776 4444421 11122 4457788
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHhh
Q 027199 146 GWYASFLFIRTGHLAAPLIAHIFCN 170 (226)
Q Consensus 146 G~~~a~ly~rTgsL~~~il~H~~~N 170 (226)
|+-.+.-|.-|||+|+.+++|...=
T Consensus 786 GL~Ctvty~vT~SlW~iV~lHW~vV 810 (827)
T COG4449 786 GLGCTVTYRVTGSLWPIVLLHWAVV 810 (827)
T ss_pred hhhhhhhHHhccchHHHHHHHHHHH
Confidence 9999999999999999999998754
No 6
>PF13367 PrsW-protease: Protease prsW family
Probab=86.51 E-value=18 Score=30.22 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=60.9
Q ss_pred HhhhhhhhhhHHHHHHHHhhHHHH--HcCCC-CcchhHH---HHHHHHHHhhhhhHHHHHH-h------h--hhhHHHHH
Q 027199 68 AWRNFVVAPLTEELVFRACMIPLL--LCGGF-KINTIIF---LCPVFFSLAHLNHLMEIYS-A------Q--NFSLLKAS 132 (226)
Q Consensus 68 ~~rn~IvaPi~EElvFRg~ll~~l--~~~~~-~~~~ai~---lssllFglaH~~h~~e~~~-~------~--g~~~~~al 132 (226)
.+...+.+|++||.+=--.++-.. .++++ ++...++ .+++=|++..--...-... + . ...+.+.+
T Consensus 43 ~~~~~~~a~~~EE~~K~l~v~~~~~~~~~~~~~~~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~~~~~~~~~~~~R~~ 122 (191)
T PF13367_consen 43 LWGAFLIAPLVEEFAKLLPVLLLLLLRRRRFDEPMDGLVYGAAVGLGFAIMENILYILNAAEDNGGSVQGGLSTAILRGI 122 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHhhcCcchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 556788999999986332222222 12222 3333332 4666677665442211000 0 0 01123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------CCchHHHHHHHHhhhhhhh
Q 027199 133 MIVGLQLGYTVVFGWYASFLFIRT---------GHLAAPLIAHIFCNYMGLP 175 (226)
Q Consensus 133 ~~~~~Q~~yt~lfG~~~a~ly~rT---------gsL~~~il~H~~~N~~Glp 175 (226)
........+|.+.|...++...|. +-+..+++.|+++|.....
T Consensus 123 ~~~~~H~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 123 TSVPGHALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455667889999998777766322 3467899999999987554
No 7
>PHA02758 hypothetical protein; Provisional
Probab=79.38 E-value=9.2 Score=34.26 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=35.0
Q ss_pred HHhhCCchHHHHHHHHhhhhhhhhhhh--c-chhHHHHHHHHHHHHHHHHHhc
Q 027199 153 FIRTGHLAAPLIAHIFCNYMGLPVLFA--R-NRGLVSVAFVAGMVAFLWLLFP 202 (226)
Q Consensus 153 y~rTgsL~~~il~H~~~N~~Glp~~~~--~-~~~~~~~~~v~G~v~f~~lL~~ 202 (226)
-.+.|.+.++|+-|++.|.+- ..+.+ + ......+...+|.++|.+-+++
T Consensus 268 iyke~giiasiighafynagv-saf~d~ikgnpl~aiiliflglvgflyal~k 319 (321)
T PHA02758 268 IYKEGGIIASIIGHAFYNAGV-SAFADGIKGNPLLAIILIFLGLVGFLYALFK 319 (321)
T ss_pred HHhcCCchhhhhhHHHHHhHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999763 23322 2 2223467889999999877653
No 8
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=71.33 E-value=53 Score=28.77 Aligned_cols=43 Identities=21% Similarity=0.057 Sum_probs=25.3
Q ss_pred HhhhhhhhhhHHHHHHHHhhHHHHHcCCCCcchhHHHHHHHHHHhhhh
Q 027199 68 AWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLN 115 (226)
Q Consensus 68 ~~rn~IvaPi~EElvFRg~ll~~l~~~~~~~~~ai~lssllFglaH~~ 115 (226)
.+-....|.+.||. .|=.-+..+.+++.+... .++.||+.|-.
T Consensus 64 ~ly~~l~AGiFEE~-gR~i~~k~l~kk~~~~~~----~al~~GlGhGg 106 (223)
T PF10086_consen 64 ALYGGLMAGIFEET-GRYIGFKYLLKKRRDWSD----DALAYGLGHGG 106 (223)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcccchhh----HHHHHHcchHH
Confidence 44567789999994 465666666533322221 36666666653
No 9
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=33.21 E-value=25 Score=31.49 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=15.8
Q ss_pred cCCCCccccCCCCCccccccccc
Q 027199 202 PITRPDLYNDRTNNCRCLHGYCS 224 (226)
Q Consensus 202 ~lt~~~~y~~~~~~~~~~~~~~~ 224 (226)
.+.+...|.| .+|+||.+=|.
T Consensus 132 ~IpRT~QY~~--~~CSCW~sGCG 152 (235)
T PF10287_consen 132 QIPRTSQYGN--AGCSCWKSGCG 152 (235)
T ss_pred cCcchhhcCC--CCCCccCCCcc
Confidence 4566677844 89999998884
No 10
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=24.11 E-value=30 Score=20.06 Aligned_cols=8 Identities=50% Similarity=1.427 Sum_probs=7.1
Q ss_pred Cccccccc
Q 027199 215 NCRCLHGY 222 (226)
Q Consensus 215 ~~~~~~~~ 222 (226)
.|+|..||
T Consensus 3 ~C~C~~Gy 10 (24)
T PF12662_consen 3 TCSCPPGY 10 (24)
T ss_pred EeeCCCCC
Confidence 59999998
No 11
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.90 E-value=74 Score=18.95 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcccc
Q 027199 188 AFVAGMVAFLWLLFPITRPDLYN 210 (226)
Q Consensus 188 ~~v~G~v~f~~lL~~lt~~~~y~ 210 (226)
..+.++.++.++..-+-+|+.+.
T Consensus 3 ~~~l~~~L~~YL~~aLl~PErF~ 25 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPERFX 25 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHHhcC
Confidence 45567777888888888888764
No 12
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=22.36 E-value=44 Score=21.18 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=10.0
Q ss_pred CCCCCccccccc
Q 027199 211 DRTNNCRCLHGY 222 (226)
Q Consensus 211 ~~~~~~~~~~~~ 222 (226)
|..++|.|..||
T Consensus 15 n~~~~C~CPeGy 26 (34)
T PF09064_consen 15 NSPGQCFCPEGY 26 (34)
T ss_pred CCCCceeCCCce
Confidence 456799999998
Done!