Query 027199
Match_columns 226
No_of_seqs 252 out of 1152
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ans_A Neurotoxin III; NMR {An 40.8 8.8 0.0003 21.9 0.8 11 215-225 3-13 (27)
2 1mct_I Trypsin inhibitor A; co 29.2 16 0.00055 21.3 0.6 14 211-224 15-28 (28)
3 1lu0_A CMTI-I, trypsin inhibit 13.2 77 0.0026 18.5 1.2 14 211-224 15-29 (29)
4 2ko5_A Ring finger protein Z; 11.1 91 0.0031 23.2 1.3 16 204-221 21-37 (99)
5 2j5h_A Teratocarcinoma-derived 10.8 77 0.0026 20.0 0.7 11 211-221 16-26 (41)
6 2knp_A Mcocc-1; disulfide-rich 9.7 1E+02 0.0036 18.0 1.0 13 208-220 9-21 (33)
7 2po8_A Mcoti-II; oxidative fol 9.2 88 0.003 18.8 0.5 14 211-224 13-27 (34)
8 1q90_L Cytochrome B6F complex 9.2 2.2E+02 0.0075 16.9 2.3 12 9-20 13-24 (32)
9 3zsu_A TLL2057 protein, cyanoq 9.0 1.2E+02 0.004 23.7 1.3 16 64-79 47-62 (130)
10 2ljs_A Trypsin inhibitor 3; be 8.3 2.2E+02 0.0077 16.4 2.0 22 203-224 8-30 (30)
No 1
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=40.84 E-value=8.8 Score=21.94 Aligned_cols=11 Identities=45% Similarity=1.458 Sum_probs=9.9
Q ss_pred CcccccccccC
Q 027199 215 NCRCLHGYCSW 225 (226)
Q Consensus 215 ~~~~~~~~~~~ 225 (226)
-|.||-|-|-|
T Consensus 3 CCPC~~~gCpW 13 (27)
T 1ans_A 3 CCPCYWGGCPW 13 (27)
T ss_dssp SCCSTTTTCSS
T ss_pred cccccccCCcc
Confidence 58999999998
No 2
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=29.24 E-value=16 Score=21.25 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.5
Q ss_pred CCCCCccccccccc
Q 027199 211 DRTNNCRCLHGYCS 224 (226)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (226)
+=+..|.|-.|||.
T Consensus 15 DCl~~C~C~~G~CG 28 (28)
T 1mct_I 15 DCMAKCICVAGHCG 28 (28)
T ss_dssp GSSTTCCEETTEEC
T ss_pred ccccCCEecccccC
Confidence 44678999999995
No 3
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=13.19 E-value=77 Score=18.50 Aligned_cols=14 Identities=50% Similarity=1.272 Sum_probs=10.5
Q ss_pred CCCCCccccc-cccc
Q 027199 211 DRTNNCRCLH-GYCS 224 (226)
Q Consensus 211 ~~~~~~~~~~-~~~~ 224 (226)
+=+..|.|-. |||.
T Consensus 15 DCl~~C~C~~~G~CG 29 (29)
T 1lu0_A 15 DCLAECVCLEHGYCG 29 (29)
T ss_dssp GSCTTCCBCTTSBBC
T ss_pred cccCCCEEccccccC
Confidence 4467889976 9995
No 4
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=11.15 E-value=91 Score=23.21 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=10.4
Q ss_pred CCCccccCCCCCc-ccccc
Q 027199 204 TRPDLYNDRTNNC-RCLHG 221 (226)
Q Consensus 204 t~~~~y~~~~~~~-~~~~~ 221 (226)
-++..|+- -|| +||+-
T Consensus 21 ~d~s~~G~--~nCKsCWf~ 37 (99)
T 2ko5_A 21 PDATHLGP--QFCKSCWFE 37 (99)
T ss_dssp SSCCCSCC--CCCCSSCSC
T ss_pred CCccccCc--ccChhhccc
Confidence 34555544 789 89974
No 5
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=10.79 E-value=77 Score=19.97 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=8.1
Q ss_pred CCCCCcccccc
Q 027199 211 DRTNNCRCLHG 221 (226)
Q Consensus 211 ~~~~~~~~~~~ 221 (226)
..=..|+||+|
T Consensus 16 k~C~LCRC~~G 26 (41)
T 2j5h_A 16 KKCSLCRCWHG 26 (41)
T ss_dssp CCCCCCCCCSS
T ss_pred cCceEEEeecC
Confidence 33467999987
No 6
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.75 E-value=1e+02 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=10.0
Q ss_pred cccCCCCCccccc
Q 027199 208 LYNDRTNNCRCLH 220 (226)
Q Consensus 208 ~y~~~~~~~~~~~ 220 (226)
+|++--..|+||.
T Consensus 9 lfrscgggcrcwp 21 (33)
T 2knp_A 9 LFRSCGGGCRCWP 21 (33)
T ss_dssp TTCCCCSSCCEEE
T ss_pred eeeccCCceeecc
Confidence 4666678899996
No 7
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=9.22 E-value=88 Score=18.80 Aligned_cols=14 Identities=43% Similarity=1.094 Sum_probs=10.6
Q ss_pred CCCCCccccc-cccc
Q 027199 211 DRTNNCRCLH-GYCS 224 (226)
Q Consensus 211 ~~~~~~~~~~-~~~~ 224 (226)
+=+..|.|-. |||.
T Consensus 13 DCl~~CiC~~~G~CG 27 (34)
T 2po8_A 13 DCPGACICRGNGYCG 27 (34)
T ss_dssp GSCTTEEECTTSBEE
T ss_pred CcccCCeEccCcccc
Confidence 4467899975 9995
No 8
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=9.19 E-value=2.2e+02 Score=16.87 Aligned_cols=12 Identities=33% Similarity=0.359 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q 027199 9 FPLFLTSLMYAG 20 (226)
Q Consensus 9 ~pl~LT~~Lf~G 20 (226)
..+.+|.++|+|
T Consensus 13 ~al~~t~~lfiG 24 (32)
T 1q90_L 13 GALVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888877
No 9
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=9.05 E-value=1.2e+02 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.6
Q ss_pred hhHHHhhhhhhhhhHH
Q 027199 64 SNILAWRNFVVAPLTE 79 (226)
Q Consensus 64 ~~~~~~rn~IvaPi~E 79 (226)
.+|...||+|=+|+.|
T Consensus 47 ~~W~~~Rn~IhGPlg~ 62 (130)
T 3zsu_A 47 GDWQEARNIMRGPLGE 62 (130)
T ss_dssp TCHHHHHHHHHTHHHH
T ss_pred cchHHHHHHHhchHHH
Confidence 4889999999999998
No 10
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=8.32 E-value=2.2e+02 Score=16.42 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCcccc-ccccc
Q 027199 203 ITRPDLYNDRTNNCRCL-HGYCS 224 (226)
Q Consensus 203 lt~~~~y~~~~~~~~~~-~~~~~ 224 (226)
+++=+.=.+-+..|-|- ||||.
T Consensus 8 lkkckrdsdcpgecic~~~gycg 30 (30)
T 2ljs_A 8 LKKCRRDSDCPGECICKGNGYCG 30 (30)
T ss_dssp CCBCSSGGGSSTTCCBCTTSBBC
T ss_pred HHHhccccCCchhheeccCcccC
Done!