BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027200
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1B64|A Chain A, Solution Structure Of The Guanine Nucleotide Exchange
           Factor Domain From Human Elongation Factor-One Beta,
           Nmr, 20 Structures
          Length = 91

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 3/87 (3%)

Query: 140 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVD 199
           +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D
Sbjct: 8   ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 67

Query: 200 TLIEEHLLEEPINEYVQSCDIVAFNKI 226
            ++EE +      +YVQS D+ AFNKI
Sbjct: 68  -MLEEQIT--AFEDYVQSMDVAAFNKI 91


>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex
           Eef1a:eef1ba
 pdb|1G7C|B Chain B, Yeast Eef1a:eef1ba In Complex With Gdpnp
          Length = 94

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 3/87 (3%)

Query: 140 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVD 199
           V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D
Sbjct: 11  VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLD 70

Query: 200 TLIEEHLLEEPINEYVQSCDIVAFNKI 226
            L  +  +EE   ++VQS DI A  K+
Sbjct: 71  DL--QQSIEED-EDHVQSTDIAAMQKL 94


>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
           Complex
 pdb|1IJF|B Chain B, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
          Length = 90

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 3/87 (3%)

Query: 140 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVD 199
           V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D
Sbjct: 7   VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLD 66

Query: 200 TLIEEHLLEEPINEYVQSCDIVAFNKI 226
            L  +  +EE   ++VQS DI A  K+
Sbjct: 67  DL--QQSIEED-EDHVQSTDIAAMQKL 90


>pdb|2B7B|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
           Mutant In Complex With Eef1a And Gdp
 pdb|2B7C|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
           Mutant In Complex With Eef1a
          Length = 94

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 3/87 (3%)

Query: 140 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVD 199
           V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D
Sbjct: 11  VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLD 70

Query: 200 TLIEEHLLEEPINEYVQSCDIVAFNKI 226
            L  +  +EE   ++VQS DI A   +
Sbjct: 71  DL--QQSIEED-EDHVQSTDIAAMQAL 94


>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
           Factor 1 Epsilon 1
 pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
           Factor 1 Epsilon 1
          Length = 174

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 12  TGLKKLDEYLLTRSYITGYQASKDDITVYSALSK-------APSSEYVNVSRWYKHID 62
           T L  L+ YL  + Y+TGY  +  DI +Y  L +           +Y+NVSRW+ HI 
Sbjct: 93  TLLXDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVDLTVQEKEKYLNVSRWFCHIQ 150


>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
           From Silkmoth
 pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
           From Silkmoth
 pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
           From Silkmoth
 pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
           From Silkmoth
          Length = 216

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 7   NVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSE-----YVNVSRWYKHI 61
           N      L+ LD++L  + Y+ G   +  D+++ +++S   +S+     Y NV RWY+ +
Sbjct: 129 NEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETV 188

Query: 62  DA 63
            +
Sbjct: 189 KS 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,947
Number of Sequences: 62578
Number of extensions: 143780
Number of successful extensions: 338
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)