Query 027202
Match_columns 226
No_of_seqs 222 out of 1079
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 100.0 2.3E-55 5E-60 372.8 21.7 197 19-226 2-211 (211)
2 PF01812 5-FTHF_cyc-lig: 5-for 100.0 3.7E-54 8E-59 357.9 16.2 181 24-222 1-186 (186)
3 PRK10333 5-formyltetrahydrofol 100.0 1.4E-53 3.1E-58 354.3 19.2 176 31-225 2-179 (182)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 1.2E-52 2.6E-57 348.2 19.9 179 24-222 1-181 (181)
5 COG0212 5-formyltetrahydrofola 100.0 2.7E-49 5.9E-54 331.0 19.5 183 21-225 2-187 (191)
6 KOG3093 5-formyltetrahydrofola 100.0 3.9E-49 8.5E-54 320.8 15.3 192 18-223 2-200 (200)
7 KOG4410 5-formyltetrahydrofola 99.7 1.1E-17 2.4E-22 144.9 10.5 183 16-226 26-236 (396)
8 PRK12420 histidyl-tRNA synthet 47.8 12 0.00027 34.7 2.1 47 176-222 295-345 (423)
9 PLN02530 histidine-tRNA ligase 46.7 14 0.00031 35.2 2.3 65 156-222 327-408 (487)
10 PRK13146 hisH imidazole glycer 45.8 6.8 0.00015 33.0 -0.0 53 154-207 40-92 (209)
11 TIGR02910 sulfite_red_A sulfit 45.7 97 0.0021 28.3 7.4 107 78-199 8-133 (334)
12 COG1332 CRISPR system related 44.8 7.5 0.00016 35.8 0.1 13 172-184 304-316 (369)
13 TIGR00443 hisZ_biosyn_reg ATP 38.0 22 0.00047 31.7 2.0 26 176-203 281-306 (314)
14 cd00773 HisRS-like_core Class 34.8 33 0.00072 29.5 2.6 27 175-202 227-253 (261)
15 PF03263 Cucumo_2B: Cucumoviru 33.0 1.7E+02 0.0037 22.0 5.6 32 18-49 12-46 (103)
16 TIGR01899 cas_TM1807_csm5 CRIS 30.4 18 0.00039 33.4 0.2 15 171-185 299-313 (365)
17 PRK01175 phosphoribosylformylg 30.1 31 0.00067 30.3 1.6 53 154-209 47-109 (261)
18 PRK12292 hisZ ATP phosphoribos 29.3 36 0.00077 31.4 1.9 30 172-204 286-315 (391)
19 PRK13152 hisH imidazole glycer 28.9 19 0.00042 29.8 0.1 52 155-207 37-88 (201)
20 PF06059 DUF930: Domain of Unk 27.9 30 0.00065 26.1 1.0 49 156-213 46-95 (101)
21 KOG4005 Transcription factor X 27.9 49 0.0011 28.9 2.3 31 13-43 57-87 (292)
22 KOG0967 ATP-dependent DNA liga 27.4 35 0.00076 33.9 1.5 47 158-207 561-611 (714)
23 PRK13181 hisH imidazole glycer 27.3 23 0.00049 29.3 0.3 50 155-207 37-87 (199)
24 PF13393 tRNA-synt_His: Histid 27.3 24 0.00052 31.0 0.4 29 171-202 280-308 (311)
25 PRK13142 hisH imidazole glycer 25.9 20 0.00043 30.1 -0.4 50 154-208 36-87 (192)
26 PRK00037 hisS histidyl-tRNA sy 24.8 41 0.00089 30.9 1.5 47 175-222 278-325 (412)
27 cd06811 PLPDE_III_yhfX_like Ty 24.8 59 0.0013 29.9 2.5 29 155-183 274-302 (382)
28 PF10001 DUF2242: Uncharacteri 24.6 32 0.00069 26.7 0.6 12 176-187 106-117 (121)
29 cd01747 GATase1_Glutamyl_Hydro 24.1 37 0.00081 29.8 1.0 53 154-206 53-106 (273)
30 PRK14004 hisH imidazole glycer 23.6 28 0.00061 29.4 0.1 50 154-206 36-86 (210)
31 cd01740 GATase1_FGAR_AT Type 1 22.6 77 0.0017 27.1 2.7 51 154-207 42-97 (238)
32 cd01742 GATase1_GMP_Synthase T 22.6 83 0.0018 25.1 2.8 45 154-206 40-84 (181)
33 PRK12295 hisZ ATP phosphoribos 22.3 76 0.0016 29.3 2.7 28 175-202 337-364 (373)
34 PRK13170 hisH imidazole glycer 22.0 28 0.00061 28.8 -0.2 46 155-206 38-84 (196)
35 KOG1515 Arylacetamide deacetyl 21.9 58 0.0012 29.7 1.8 22 180-201 111-132 (336)
36 PF12434 Malate_DH: Malate deh 21.5 1.6E+02 0.0034 16.9 2.8 12 22-33 12-23 (28)
37 PLN02832 glutamine amidotransf 21.4 36 0.00078 29.7 0.4 50 154-206 37-86 (248)
38 TIGR03800 PLP_synth_Pdx2 pyrid 21.0 33 0.00072 28.2 0.1 50 154-206 35-84 (184)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=2.3e-55 Score=372.83 Aligned_cols=197 Identities=56% Similarity=0.882 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCC--CCChHHHHHHHHhCCCCCCC
Q 027202 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD 96 (226)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~--Evdt~~li~~~~~~~~~~~~ 96 (226)
.+.+.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++ + ||||.+|++.+++
T Consensus 2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~------- 72 (211)
T PLN02812 2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ------- 72 (211)
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence 4667899999999999999999999999999999999999999999999999998 6 9999999999998
Q ss_pred CCCC-cEEEEeeEeCCCCceEEEEeCCC-CccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccc
Q 027202 97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG 174 (226)
Q Consensus 97 ~~~g-k~v~lP~v~~~~~~m~f~~~~~~-~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG 174 (226)
.| |+|+||+|...+..|.|+.|++. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||
T Consensus 73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG 150 (211)
T PLN02812 73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLG 150 (211)
T ss_pred --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCc
Confidence 89 99999999765456999999986 789999999999985421111000111134678999999999999999999
Q ss_pred cCCChhhhhhhhhc----C--CCCccEEEEEecccccc--cCC-cccCccccEEEcCCccC
Q 027202 175 RGGGSTKSLQRKEI----G--GNPSLLLCHILCRSWMK--ESY-QLLQRTCQLMLLYPRLV 226 (226)
Q Consensus 175 ~GgGyYDR~L~~~~----~--~~~~~~igla~~~Q~v~--~ip-e~hD~~ld~iit~~~~~ 226 (226)
||||||||||++++ . +..+.+|||||++|+++ .+| |+||+|||.|||+.+++
T Consensus 151 ~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~hD~~ld~iiTe~~vi 211 (211)
T PLN02812 151 RGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGVI 211 (211)
T ss_pred CCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCCCCCccccccCCEEEcCCcCC
Confidence 99999999999863 1 12366899999999999 999 99999999999999874
No 2
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=3.7e-54 Score=357.86 Aligned_cols=181 Identities=27% Similarity=0.418 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (226)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (226)
|++||++++++|++++++++.+.|+.|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v 69 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV 69 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence 89999999999999999999999999999999999999999999999998 89999999999999 99999
Q ss_pred EEeeEeCCC---CceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChh
Q 027202 104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGST 180 (226)
Q Consensus 104 ~lP~v~~~~---~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyY 180 (226)
++|++..+. ..|.|+.+.+.+++.+|.|||+||..... .......+|+|||||||||++|+|||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyY 142 (186)
T PF01812_consen 70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYY 142 (186)
T ss_dssp EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHH
T ss_pred ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHH
Confidence 999998875 35788888888999999999999986531 11122379999999999999999999999999
Q ss_pred hhhhhhhcC-CCCccEEEEEecccccccCC-cccCccccEEEcC
Q 027202 181 KSLQRKEIG-GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLY 222 (226)
Q Consensus 181 DR~L~~~~~-~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~ 222 (226)
||||+.++. ...+.+|||||++|+++.+| |+||++||+||||
T Consensus 143 DR~L~~~~~~~~~~~~igl~~~~q~~~~iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 143 DRFLARLPPGRKKPLKIGLAFDFQIVDDIPVEPHDIPLDAIITE 186 (186)
T ss_dssp HHHHHHHTS-SS--EEEEEE-GGGEES-----TTS-B-SEEEET
T ss_pred HhHHHhhhcccCCCeEEEEeehhheeCCCCCCcccccCCEEEcC
Confidence 999998864 33578999999999999999 8999999999997
No 3
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=1.4e-53 Score=354.33 Aligned_cols=176 Identities=17% Similarity=0.275 Sum_probs=157.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 027202 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED 110 (226)
Q Consensus 31 ~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~ 110 (226)
++++|++++++++...|++|+++|.+++.|+++++|++|+|++ +||||.+|++.+++ .||+|+||+|.+
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~ 70 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP 70 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence 5788999999999999999999999999999999999999999 89999999999999 899999999975
Q ss_pred C-CCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhhhhhhcC
Q 027202 111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIG 189 (226)
Q Consensus 111 ~-~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~ 189 (226)
. ...|.|+.|++.++|.+|+|||+||..... . ......+|+|||||||||++|+|||||||||||||+.++.
T Consensus 71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~------~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~ 143 (182)
T PRK10333 71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR------D-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH 143 (182)
T ss_pred CCCCEEEEEECCCCCccccCCCCCCCCCcccc------c-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc
Confidence 4 246999999998999999999999975321 1 1235678999999999999999999999999999998753
Q ss_pred CCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 190 GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 190 ~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
..+.+||+||++|+++++| |+||+|||.|||++++
T Consensus 144 -~~~~~igla~~~Q~~~~ip~e~hD~~ld~iiTe~~~ 179 (182)
T PRK10333 144 -YKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV 179 (182)
T ss_pred -cCCcEEEEeeeeEEeCCcCCCcccCcCCEEEeCCeE
Confidence 2356899999999999999 9999999999999885
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=1.2e-52 Score=348.16 Aligned_cols=179 Identities=25% Similarity=0.376 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (226)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (226)
|++||++++++|++++.+++.+.|++|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v 69 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV 69 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence 78999999999999999999999999999999999999999999999999 89999999999998 89999
Q ss_pred EEeeEeCCC-CceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202 104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS 182 (226)
Q Consensus 104 ~lP~v~~~~-~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR 182 (226)
+||++...+ ..|.|..|++.++|..|.|||+||..+.. . ......+|+|||||||||++|+|||||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~------~-~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR 142 (181)
T TIGR02727 70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST------E-PVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDR 142 (181)
T ss_pred EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc------C-cCCcccCCEEEeCceEEcCCCccccCCcchHHH
Confidence 999997653 23677778877789999999999985310 0 124567999999999999999999999999999
Q ss_pred hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcC
Q 027202 183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLY 222 (226)
Q Consensus 183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~ 222 (226)
||+.++. .+.+|||||++|+++.+| |+||++||+|||+
T Consensus 143 ~L~~~~~--~~~~igv~~~~q~~~~lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 143 FLANLKG--KTVVVGLAFDFQLVDELPREPHDVPVDAIITE 181 (181)
T ss_pred HHHhccc--CCCEEEEEecceeeCccCCCccCccCCEEeCC
Confidence 9998753 345899999999999999 9999999999996
No 5
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-49 Score=330.97 Aligned_cols=183 Identities=23% Similarity=0.343 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 027202 21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (226)
Q Consensus 21 ~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g 100 (226)
.+.|++||++++++|.++++..+...+..+++++..++.+.++++|++|+|++ +|+||.++++.+++ +|
T Consensus 2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g 70 (191)
T COG0212 2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG 70 (191)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence 35799999999999999999999999999999999999999999999999999 89999999999999 99
Q ss_pred cEEEEeeEeCCCCceEEEEeCCC--CccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCC
Q 027202 101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (226)
Q Consensus 101 k~v~lP~v~~~~~~m~f~~~~~~--~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgG 178 (226)
|+|++|++.+ ..+.|..|.+. ..+..+.|||.||..... .+ .+..+|+||||+||||++|+|||||||
T Consensus 71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~------~~--~~~~iDlvlvP~Vafd~~G~RLG~GgG 140 (191)
T COG0212 71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR------KI--PPPEIDLVLVPLVAFDKQGYRLGYGGG 140 (191)
T ss_pred CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC------cc--CCCcCCEEEeCceeECCCCccccCCCc
Confidence 9999999986 35788888887 888999999999986431 11 126799999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 179 STKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 179 yYDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
||||||+... ..++.+||+||+||+++.+| |+||+|||.|+|++++
T Consensus 141 yYDR~la~~~-~~~~~~ig~~~~~Q~v~~lP~e~hDv~ld~ivt~~~~ 187 (191)
T COG0212 141 YYDRYLANLR-GRKTPTVGIAYDCQLVDHLPREPHDVPLDAIVTEEGV 187 (191)
T ss_pred hHHHHHHhhc-cCCCCEEEEEEeeeeeccCCCCcccCcccEEEeCCce
Confidence 9999999885 34688999999999999998 9999999999999986
No 6
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-49 Score=320.78 Aligned_cols=192 Identities=32% Similarity=0.567 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCC
Q 027202 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT 97 (226)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~ 97 (226)
+.++..|+.||+.++..+++|+++.+..+|++|+++++++++|+++++|++|+||.+ +||+|..||+.+++
T Consensus 2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------- 72 (200)
T KOG3093|consen 2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------- 72 (200)
T ss_pred chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence 567889999999999999999999999999999999999999999999999999995 59999999999999
Q ss_pred CCCcEEEEeeEeCCCCceEEEEeCCCCc---cccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccc
Q 027202 98 KTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG 174 (226)
Q Consensus 98 ~~gk~v~lP~v~~~~~~m~f~~~~~~~~---l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG 174 (226)
.||.||+|+|......|.+.++...++ +..+.|||++|.+.. .+++.......+|||||||||||+.|.|||
T Consensus 73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~----~re~~~~t~~~lDLiivPGvAFd~~g~RlG 147 (200)
T KOG3093|consen 73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGG----PREDALETGHPLDLIIVPGVAFDRKGARLG 147 (200)
T ss_pred -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCC----chhhhccCCCcceEEEecccccchhhhhcc
Confidence 999999999977667899999987654 456899999998753 344443334469999999999999999999
Q ss_pred cCCChhhhhhhhhc---CCCCccEEEEEecccccccCC-cccCccccEEEcCC
Q 027202 175 RGGGSTKSLQRKEI---GGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYP 223 (226)
Q Consensus 175 ~GgGyYDR~L~~~~---~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~ 223 (226)
+|+||||+||.++. ++.++.+||+|+.+|++.+|| ++||+.+|.|||+.
T Consensus 148 hGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI~~~IPv~~~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 148 HGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILSEIPVEEHDVKLDAVVTED 200 (200)
T ss_pred CCcchHHHHHHHHHHhccccCchhhhhhhhHhhcccCCCCccceeeeEeecCC
Confidence 99999999998754 356789999999999999999 99999999999983
No 7
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.1e-17 Score=144.91 Aligned_cols=183 Identities=16% Similarity=0.185 Sum_probs=132.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHc----CCHHHH------HHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHH
Q 027202 16 DLESIFQQKRILRSQVRKTLKS----MDPSLR------SHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLS 85 (226)
Q Consensus 16 ~~~~~~~~K~~LR~~~~~~R~~----l~~~~~------~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~ 85 (226)
+-+++...|..+|.+++....+ +++.-. ...+.++|+.+.++..|+.|+.|-+-. .-.+..+..
T Consensus 26 ~~qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnp------D~pl~~~r~ 99 (396)
T KOG4410|consen 26 TTQDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNP------DRPLHEFRE 99 (396)
T ss_pred CCCCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCC------CchHHHHHH
Confidence 3356788899999999988754 333221 245778889999999999999988664 234777777
Q ss_pred HHHhCCCCCCCCCCCcEEEEeeEeCCCCceEEEEeCCCCc----ccc---CCCcc---cCCCCCCCCCCchhhhccCCCC
Q 027202 86 QILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD----LIA---NSMNI---LEPAPVDADGNEREDVMQANEP 155 (226)
Q Consensus 86 ~~~~~~~~~~~~~~gk~v~lP~v~~~~~~m~f~~~~~~~~----l~~---g~~gI---~EP~~~~~~~~~~~~~~~~~~~ 155 (226)
.++. ..|++++|...-..+ .|..+++..+ ..+ ..-|+ ..+.. +...-.
T Consensus 100 L~L~---------~~Ksll~PspRlrtg--lf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IG-----------LDs~lk 157 (396)
T KOG4410|consen 100 LALL---------ADKSLLLPSPRLRTG--LFLKVDVLADATEEIKKECLTSQGVQKYRSEIG-----------LDSGLK 157 (396)
T ss_pred HHhh---------cccceecCCchhhcc--eeeeeccCCCCcHHHHHHHHhhhhHHHhCcccc-----------cccCce
Confidence 8887 789999998754432 3555554311 100 11121 12221 112346
Q ss_pred ccEEEEecceecCCCCccccCCChhhhhhhhhc----CCCCccEEEEEecccccccCC----cccCccccEEEcCCccC
Q 027202 156 VDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEI----GGNPSLLLCHILCRSWMKESY----QLLQRTCQLMLLYPRLV 226 (226)
Q Consensus 156 iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~----~~~~~~~igla~~~Q~v~~ip----e~hD~~ld~iit~~~~~ 226 (226)
+|||+|..||+++.|+|||.|-||-|--...+. -.+.+++|.++||||+||+|| +.||+|+|+|+||||++
T Consensus 158 vDlvViGSVavs~~G~RiGkGeGfAdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrvI 236 (396)
T KOG4410|consen 158 VDLVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRVI 236 (396)
T ss_pred EEEEEEeeEEecccceeeccCCchhhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccceEE
Confidence 899999999999999999999999997765432 134678899999999999998 37999999999999963
No 8
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=47.76 E-value=12 Score=34.73 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=30.2
Q ss_pred CCChhhhhhhhhcCC-CCccEEEEEeccc-ccccCC--cccCccccEEEcC
Q 027202 176 GGGSTKSLQRKEIGG-NPSLLLCHILCRS-WMKESY--QLLQRTCQLMLLY 222 (226)
Q Consensus 176 GgGyYDR~L~~~~~~-~~~~~igla~~~Q-~v~~ip--e~hD~~ld~iit~ 222 (226)
|||=||+.+....+. ...+.||+++..- +++.+. ...+.+.|++|.+
T Consensus 295 ~GGRYD~L~~~f~~~~~~~pAvGfa~~~~~l~~~l~~~~~~~~~~dvlI~~ 345 (423)
T PRK12420 295 SGGRYDNIIGAFRGDDMNYPTVGISFGLDVIYTALSQKETISSTADVFIIP 345 (423)
T ss_pred CCccHHHHHHHhCCCCCCCCceeEEEcHHHHHHHHHhcCCCCCCceEEEEE
Confidence 899999999987431 2456899999854 333332 1233567876653
No 9
>PLN02530 histidine-tRNA ligase
Probab=46.74 E-value=14 Score=35.22 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=41.7
Q ss_pred ccEEEEecce---------ecCCC-CccccCCChhhhhhhhhcCCCCccEEEEEeccccc-cc------CCcccCccccE
Q 027202 156 VDLFLLPGLA---------FDRSG-RRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWM-KE------SYQLLQRTCQL 218 (226)
Q Consensus 156 iDlviVPglA---------FD~~G-~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v-~~------ipe~hD~~ld~ 218 (226)
+|+-+|.|+. |+..| .+-=-|||=||+.+....+ +..+.||+++....+ +. +| .|..+.|+
T Consensus 327 ~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg-~~~pAvGFa~g~~~l~~~l~~~g~~p-~~~~~~dV 404 (487)
T PLN02530 327 FDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGG-EDTPACGFGFGDAVIVELLKEKGLLP-ELPHQVDD 404 (487)
T ss_pred EecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCC-CCCCeeEEEEhHHHHHHHHHhcCCCC-CCCCCCcE
Confidence 6778888876 44333 2333489999999998742 456789998884432 21 12 25566777
Q ss_pred EEcC
Q 027202 219 MLLY 222 (226)
Q Consensus 219 iit~ 222 (226)
+|.+
T Consensus 405 lVi~ 408 (487)
T PLN02530 405 VVFA 408 (487)
T ss_pred EEEE
Confidence 6654
No 10
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.84 E-value=6.8 Score=32.96 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEeccccccc
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKE 207 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~~ 207 (226)
...|.||+||........+.=.--|+.++.+..... ...+++|+|+-.|++..
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~PvlGiC~G~q~l~~ 92 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLA-AGRPFLGICVGMQLLFE 92 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHh-CCCcEEEECHHHHHHhh
Confidence 478999999965432221111112556666554321 24578999999998753
No 11
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=45.68 E-value=97 Score=28.33 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=61.9
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC-CC-----CceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhc-
Q 027202 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVED-KN-----SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVM- 150 (226)
Q Consensus 78 vdt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~-~~-----~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~- 150 (226)
-++..+++.+.+ . .+|+.|+... ++ ....|..|++.+++.-+.-+..-|+.-- .+ +.+.++
T Consensus 8 ~~l~~ll~~L~~---------~-y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~~~~~~spK~~l-fP-~~E~L~~ 75 (334)
T TIGR02910 8 EEFNLLLQKLNK---------D-YKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFHEKSHFSPKEII-LP-ITETLFY 75 (334)
T ss_pred HHHHHHHHHHHh---------C-CEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccCCCCCCCchhhc-cC-CcceeEE
Confidence 346778888765 4 9999999852 22 3678888988777765521222222110 00 000000
Q ss_pred --------cCCCCccEEEEecceecCCCCc----cccCCChhhhhhhhhcCCCCccEEEEE
Q 027202 151 --------QANEPVDLFLLPGLAFDRSGRR----LGRGGGSTKSLQRKEIGGNPSLLLCHI 199 (226)
Q Consensus 151 --------~~~~~iDlviVPglAFD~~G~R----LG~GgGyYDR~L~~~~~~~~~~~igla 199 (226)
.....-..+|. .=++|-++-. +=-++||.|.|....+. +...||++
T Consensus 76 f~~~~~~~~~~~~~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe--~~~iV~~~ 133 (334)
T TIGR02910 76 FTEDTVQEAETDKKNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLRE--KVKFVLIE 133 (334)
T ss_pred EEcCcccccCCCCCcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHh--CcEEEEEe
Confidence 01112235566 8899988743 22278999999987653 46667664
No 12
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=44.76 E-value=7.5 Score=35.82 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=11.5
Q ss_pred ccccCCChhhhhh
Q 027202 172 RLGRGGGSTKSLQ 184 (226)
Q Consensus 172 RLG~GgGyYDR~L 184 (226)
+|||||||+-.++
T Consensus 304 ~lG~GgG~~skTi 316 (369)
T COG1332 304 HLGFGGGWRSKTI 316 (369)
T ss_pred EEecccceeeeee
Confidence 6999999997776
No 13
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=37.99 E-value=22 Score=31.69 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCChhhhhhhhhcCCCCccEEEEEeccc
Q 027202 176 GGGSTKSLQRKEIGGNPSLLLCHILCRS 203 (226)
Q Consensus 176 GgGyYDR~L~~~~~~~~~~~igla~~~Q 203 (226)
|||=||..+... + +..+.||+++..-
T Consensus 281 ~GGRYD~L~~~f-g-~~~~AvGfa~~~d 306 (314)
T TIGR00443 281 GGGRYDNLLGRF-G-RPLPATGFALNLE 306 (314)
T ss_pred CCccHHHHHHHc-C-CCCCCceEEecHH
Confidence 789999999877 3 3567799988754
No 14
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=34.82 E-value=33 Score=29.52 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=20.1
Q ss_pred cCCChhhhhhhhhcCCCCccEEEEEecc
Q 027202 175 RGGGSTKSLQRKEIGGNPSLLLCHILCR 202 (226)
Q Consensus 175 ~GgGyYDR~L~~~~~~~~~~~igla~~~ 202 (226)
-|||=||..+....+ ...+.||+++..
T Consensus 227 ~~GGRYD~L~~~f~~-~~~~avGfa~~~ 253 (261)
T cd00773 227 AGGGRYDGLLEEFGG-EDVPAVGFAIGL 253 (261)
T ss_pred eeccCHHHHHHHhCC-CCCCeEEEEEcH
Confidence 378999999987532 345778988874
No 15
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=33.03 E-value=1.7e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 027202 18 ESIFQQKRILRSQVRKTLKS---MDPSLRSHEDNA 49 (226)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~---l~~~~~~~~s~~ 49 (226)
..+.+.|+.-|+..++.|++ -||.++......
T Consensus 12 arm~Ekkk~rR~~Hk~NRkeRGhKSPSEr~Rs~lr 46 (103)
T PF03263_consen 12 ARMVEKKKQRRRSHKKNRKERGHKSPSERARSELR 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhcCCCCHHHHHHHHHH
Confidence 44566788888888888876 467766554444
No 16
>TIGR01899 cas_TM1807_csm5 CRISPR-associated RAMP protein, Csm5 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Probab=30.41 E-value=18 Score=33.41 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.6
Q ss_pred CccccCCChhhhhhh
Q 027202 171 RRLGRGGGSTKSLQR 185 (226)
Q Consensus 171 ~RLG~GgGyYDR~L~ 185 (226)
-|+|+|+||+-.++.
T Consensus 299 ~~iG~g~G~~s~t~~ 313 (365)
T TIGR01899 299 LHIGWGGGLRSKTIG 313 (365)
T ss_pred EEeecccceeeeeeE
Confidence 599999999977663
No 17
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=30.08 E-value=31 Score=30.27 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=32.9
Q ss_pred CCccEEEEecceecCCCCccccCCChhhhh-------hhhhcCCCCccEEEEEecccccc---cCC
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKSL-------QRKEIGGNPSLLLCHILCRSWMK---ESY 209 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR~-------L~~~~~~~~~~~igla~~~Q~v~---~ip 209 (226)
...|.+++||- |+ .|..++.|.-+-.++ +...- ....+++|+|.-+|++- .+|
T Consensus 47 ~~~DgLvipGG-fs-~gD~l~~g~~~~~~l~~~l~~~Ik~f~-~~gkpVLGICnG~QlLa~~GlLp 109 (261)
T PRK01175 47 SDYDCLVIPGG-FS-AGDYIRAGAIFAARLKAVLRKDIEEFI-DEGYPIIGICNGFQVLVELGLLP 109 (261)
T ss_pred hhCCEEEECCC-CC-cccccccchhhHHHHHHHHHHHHHHHH-HCCCeEEEECHHHHHHHHCCCCC
Confidence 46899999994 53 234566666443332 22221 12457899999999873 456
No 18
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=29.30 E-value=36 Score=31.40 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=22.2
Q ss_pred ccccCCChhhhhhhhhcCCCCccEEEEEecccc
Q 027202 172 RLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSW 204 (226)
Q Consensus 172 RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~ 204 (226)
.|+ |||=||..+... + +..+.||+++....
T Consensus 286 ~i~-~GGRYD~L~~~f-g-~~~pAvGfai~ldr 315 (391)
T PRK12292 286 PIA-SGGRYDDLLGRF-G-RARPATGFSLDLDR 315 (391)
T ss_pred ccc-CCcchhhHHHHc-C-CCCCCceEEeeHHH
Confidence 344 889999999887 3 35677999888543
No 19
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.85 E-value=19 Score=29.83 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=32.7
Q ss_pred CccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEeccccccc
Q 027202 155 PVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKE 207 (226)
Q Consensus 155 ~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~~ 207 (226)
.+|.+|+||.+=-.+..|.-.--|+.+......-. ...+++|+|.-.|++..
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~-~~~pvlGiC~G~Q~l~~ 88 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLV-QKKPILGICLGMQLFLE 88 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHh-CCCcEEEECHhHHHHhh
Confidence 47888889987633333443334666665543211 23568999999998753
No 20
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=27.91 E-value=30 Score=26.10 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=33.2
Q ss_pred ccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEecccccccCC-cccC
Q 027202 156 VDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQ 213 (226)
Q Consensus 156 iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD 213 (226)
=+.|-+||.||-.. |.||+--+.-.-. . -.+--++|++++-+.|| +.|+
T Consensus 46 g~~l~a~gaAFRs~-------g~WY~l~F~C~vd-~-d~~~V~sF~~~vG~~IP~s~W~ 95 (101)
T PF06059_consen 46 GNVLDAPGAAFRSR-------GKWYDLSFRCEVD-P-DATKVTSFSFKVGDPIPRSEWD 95 (101)
T ss_pred CCEEecCCcEEecC-------CeEEEEEEEEEEC-C-CceEEEEEeeccCCcCCHHHHH
Confidence 36788999999765 5788866653211 1 22345679999999999 4554
No 21
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.88 E-value=49 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCHHHH
Q 027202 13 KEHDLESIFQQKRILRSQVRKTLKSMDPSLR 43 (226)
Q Consensus 13 ~~~~~~~~~~~K~~LR~~~~~~R~~l~~~~~ 43 (226)
|...++.++.+.|.+|++++.+-.+-+...|
T Consensus 57 Kr~RL~HLS~EEK~~RrKLKNRVAAQtaRDr 87 (292)
T KOG4005|consen 57 KRRRLDHLSWEEKVQRRKLKNRVAAQTARDR 87 (292)
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHhhhhhH
Confidence 4556778888888999999988877665443
No 22
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair]
Probab=27.35 E-value=35 Score=33.88 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=32.9
Q ss_pred EEEEecceecCCCCccccCCCh----hhhhhhhhcCCCCccEEEEEeccccccc
Q 027202 158 LFLLPGLAFDRSGRRLGRGGGS----TKSLQRKEIGGNPSLLLCHILCRSWMKE 207 (226)
Q Consensus 158 lviVPglAFD~~G~RLG~GgGy----YDR~L~~~~~~~~~~~igla~~~Q~v~~ 207 (226)
|=+||--||-.+|.|.|.+||| ||---... ....+||-.|+-+.+.+
T Consensus 561 lDLv~iga~~G~GrrtG~yg~fLlacyn~dteef---qsiCKigtGFsD~~l~e 611 (714)
T KOG0967|consen 561 LDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEF---QSICKIGTGFSDEFLQE 611 (714)
T ss_pred eeeeeeeeeeccccccccccceeEEeecCchHHH---HHHHhhcCCCCHHHHHH
Confidence 5678889999999999999998 43322222 13456788888766543
No 23
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.34 E-value=23 Score=29.29 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=28.5
Q ss_pred CccEEEEeccee-cCCCCccccCCChhhhhhhhhcCCCCccEEEEEeccccccc
Q 027202 155 PVDLFLLPGLAF-DRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKE 207 (226)
Q Consensus 155 ~iDlviVPglAF-D~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~~ 207 (226)
.+|.||+||..= +..-..+ .-.|+++....... ...+++|+|+-.|++..
T Consensus 37 ~~d~lilpG~g~~~~~~~~l-~~~~~~~~i~~~~~--~~~PvlGiC~G~Qll~~ 87 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSL-RESGLDEALKEHVE--KKQPVLGICLGMQLLFE 87 (199)
T ss_pred cCCEEEECCCCCHHHHHHHH-HHCChHHHHHHHHH--CCCCEEEECHhHHHhhh
Confidence 578999999531 1111111 11355554443232 24577999999998753
No 24
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=27.33 E-value=24 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=20.7
Q ss_pred CccccCCChhhhhhhhhcCCCCccEEEEEecc
Q 027202 171 RRLGRGGGSTKSLQRKEIGGNPSLLLCHILCR 202 (226)
Q Consensus 171 ~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~ 202 (226)
..|+ |||=||..+.... +..+.||+++..
T Consensus 280 ~~ia-~GGRYD~L~~~fg--~~~~AvGfai~l 308 (311)
T PF13393_consen 280 SPIA-GGGRYDNLLEQFG--KPIPAVGFAIGL 308 (311)
T ss_dssp SESE-EEEEETTHHHHTT--SS-EEEEEEEEH
T ss_pred ceEe-cccChhHHHHHhC--CCCceEEEEEEe
Confidence 3444 6899999999872 456789988764
No 25
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.86 E-value=20 Score=30.06 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCccEEEEecc-eecCCCCccccCCChhhhhhhhhcCCCCccEEEEEeccccc-ccC
Q 027202 154 EPVDLFLLPGL-AFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWM-KES 208 (226)
Q Consensus 154 ~~iDlviVPgl-AFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v-~~i 208 (226)
...|.+|+||+ +|+.....| .-.|++|.... .. ..+++|+|--.|++ +.+
T Consensus 36 ~~~D~lIlPG~g~~~~~~~~L-~~~gl~~~i~~-~~---g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 36 DQAETIILPGVGHFKDAMSEI-KRLNLNAILAK-NT---DKKMIGICLGMQLMYEHS 87 (192)
T ss_pred ccCCEEEECCCCCHHHHHHHH-HHCCcHHHHHH-hC---CCeEEEECHHHHHHhhhc
Confidence 35799999999 777655433 22356555444 22 35679999999986 444
No 26
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=24.82 E-value=41 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=29.6
Q ss_pred cCCChhhhhhhhhcCCCCccEEEEEeccccc-ccCCcccCccccEEEcC
Q 027202 175 RGGGSTKSLQRKEIGGNPSLLLCHILCRSWM-KESYQLLQRTCQLMLLY 222 (226)
Q Consensus 175 ~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v-~~ipe~hD~~ld~iit~ 222 (226)
-|||=||..+....+ ...+.||+++...-+ ..+.+...-|.|++|.+
T Consensus 278 ~~GGRYD~L~~~f~~-~~~pavGfs~~le~l~~~l~~~~~~~~~vlI~~ 325 (412)
T PRK00037 278 CGGGRYDGLVEQFGG-PPTPAVGFAIGVERLLLLLEELGEEPVDVYVVP 325 (412)
T ss_pred eeccchhHHHHHhCC-CCCceEEEEEcHHHHHHHHHhcCCCCCCEEEEE
Confidence 488999999887642 356778998886533 33322221467766654
No 27
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=24.78 E-value=59 Score=29.95 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=21.8
Q ss_pred CccEEEEecceecCCCCccccCCChhhhh
Q 027202 155 PVDLFLLPGLAFDRSGRRLGRGGGSTKSL 183 (226)
Q Consensus 155 ~iDlviVPglAFD~~G~RLG~GgGyYDR~ 183 (226)
++-+.++-=+..-++|.=.|||||||=|=
T Consensus 274 kpam~l~s~Is~~~~G~~v~YG~~~~~~~ 302 (382)
T cd06811 274 KPAMVYVSEVSHTFGGHSYCYGGGFYRRS 302 (382)
T ss_pred cccEEEEEEEEEecCCceEeeCCcccccc
Confidence 44455666666678899999999999553
No 28
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=24.60 E-value=32 Score=26.74 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=9.6
Q ss_pred CCChhhhhhhhh
Q 027202 176 GGGSTKSLQRKE 187 (226)
Q Consensus 176 GgGyYDR~L~~~ 187 (226)
-+.|||||+...
T Consensus 106 ~~~FY~rFF~lv 117 (121)
T PF10001_consen 106 DGDFYDRFFQLV 117 (121)
T ss_pred chhHHHHHHHHH
Confidence 368999999754
No 29
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=24.10 E-value=37 Score=29.84 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=34.7
Q ss_pred CCccEEEEecceecCC-CCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 154 EPVDLFLLPGLAFDRS-GRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 154 ~~iDlviVPglAFD~~-G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
..+|-||+||=+.|.+ ..-+.-.+..|++.+.........+++|+|.-+|++-
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~ 106 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLT 106 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHH
Confidence 4678899999776654 1122233567777776654333467899999999753
No 30
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.57 E-value=28 Score=29.40 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCccEEEEeccee-cCCCCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 154 EPVDLFLLPGLAF-DRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 154 ~~iDlviVPglAF-D~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
...|.||+||..= +..-.+| .--|..+....... ...+++|+|.-.|++-
T Consensus 36 ~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~--~~~pilGiC~G~Q~l~ 86 (210)
T PRK14004 36 ENSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVE--SGKPLFGICIGFQILF 86 (210)
T ss_pred ccCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHH--cCCCEEEECHhHHHHH
Confidence 4679999999951 1111111 11245544443332 2456899999999874
No 31
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=22.65 E-value=77 Score=27.07 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCccEEEEecceecCCCCccccCCChhhh-----hhhhhcCCCCccEEEEEeccccccc
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKS-----LQRKEIGGNPSLLLCHILCRSWMKE 207 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR-----~L~~~~~~~~~~~igla~~~Q~v~~ 207 (226)
...|.||+||- |+ .|..++-|..+-.+ ++..... ...+++|+|+-+|++-.
T Consensus 42 ~~~d~liipGG-~~-~~d~l~~~~~~~~~~~~~~~l~~~~~-~g~pvlGIC~G~QlL~~ 97 (238)
T cd01740 42 DDYDGVVLPGG-FS-YGDYLRAGAIAAASPLLMEEVKEFAE-RGGLVLGICNGFQILVE 97 (238)
T ss_pred hhCCEEEECCC-CC-cccccccccccccChhHHHHHHHHHh-CCCeEEEECcHHHHHHH
Confidence 36799999996 32 34456555555333 3333221 34678999999998753
No 32
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.62 E-value=83 Score=25.14 Aligned_cols=45 Identities=7% Similarity=-0.130 Sum_probs=26.5
Q ss_pred CCccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
..+|.||+||=..+..... .=.+++.+... ..+++|+|+-.|++-
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~----~~~~~~~~~~~----~~PilGIC~G~Qll~ 84 (181)
T cd01742 40 KNPKGIILSGGPSSVYEED----APRVDPEIFEL----GVPVLGICYGMQLIA 84 (181)
T ss_pred cCCCEEEECCCcccccccc----cchhhHHHHhc----CCCEEEEcHHHHHHH
Confidence 4688999999544332211 01123333321 457899999999764
No 33
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.30 E-value=76 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.4
Q ss_pred cCCChhhhhhhhhcCCCCccEEEEEecc
Q 027202 175 RGGGSTKSLQRKEIGGNPSLLLCHILCR 202 (226)
Q Consensus 175 ~GgGyYDR~L~~~~~~~~~~~igla~~~ 202 (226)
-|||=||..+....+.+..+.||+++..
T Consensus 337 ~~GGRYD~Li~~fg~~~~~pAvGfai~~ 364 (373)
T PRK12295 337 AGGGRYDGLLTRLGAGEPIPAVGFSIWL 364 (373)
T ss_pred cCCcCHHHHHHHhCCCCCCCeeEEEEcH
Confidence 3899999988876422456788988764
No 34
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.02 E-value=28 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=29.0
Q ss_pred CccEEEEecceecC-CCCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 155 PVDLFLLPGLAFDR-SGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 155 ~iDlviVPglAFD~-~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
.+|.||+||++-.. ...+| .-.|+.+..+.. ..+++|+|.-.|++.
T Consensus 38 ~~d~iIlPG~G~~~~~~~~l-~~~~l~~~i~~~-----~~PilGIClG~Qll~ 84 (196)
T PRK13170 38 AADKLFLPGVGTAQAAMDQL-RERELIDLIKAC-----TQPVLGICLGMQLLG 84 (196)
T ss_pred CCCEEEECCCCchHHHHHHH-HHcChHHHHHHc-----CCCEEEECHHHHHHh
Confidence 56889999975433 33333 112555555442 246899999999875
No 35
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=21.88 E-value=58 Score=29.75 Aligned_cols=22 Identities=5% Similarity=-0.108 Sum_probs=13.4
Q ss_pred hhhhhhhhcCCCCccEEEEEec
Q 027202 180 TKSLQRKEIGGNPSLLLCHILC 201 (226)
Q Consensus 180 YDR~L~~~~~~~~~~~igla~~ 201 (226)
||.|+..+....++.+|.+-|-
T Consensus 111 y~~~~~~~a~~~~~vvvSVdYR 132 (336)
T KOG1515|consen 111 YDSFCTRLAAELNCVVVSVDYR 132 (336)
T ss_pred hHHHHHHHHHHcCeEEEecCcc
Confidence 9999987643234555555553
No 36
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.48 E-value=1.6e+02 Score=16.92 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 027202 22 QQKRILRSQVRK 33 (226)
Q Consensus 22 ~~K~~LR~~~~~ 33 (226)
+.|.+||+..++
T Consensus 12 ~~r~~lR~AALe 23 (28)
T PF12434_consen 12 DKRAQLRQAALE 23 (28)
T ss_pred HHHHHHHHHHHH
Confidence 345567776554
No 37
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=21.42 E-value=36 Score=29.73 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=35.0
Q ss_pred CCccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
...|.+|+|| +|+..=.+|..-.|.+|....... ...+..|+|--.|++-
T Consensus 37 ~~~DgLILPG-Gfs~~~~~L~~~~gl~~~I~~~v~--~g~PvLGiC~GmqlLa 86 (248)
T PLN02832 37 EGVSGLIIPG-GESTTMAKLAERHNLFPALREFVK--SGKPVWGTCAGLIFLA 86 (248)
T ss_pred ccCCEEEeCC-CHHHHHHHHHhhcchHHHHHHHHH--cCCCEEEEChhHHHHH
Confidence 4679999999 888654466544577776554332 2356799999999873
No 38
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=21.04 E-value=33 Score=28.24 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCccEEEEecceecCCCCccccCCChhhhhhhhhcCCCCccEEEEEecccccc
Q 027202 154 EPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK 206 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~ 206 (226)
...|.+|+|| +++..-.++-.=-++.+. +...- ....+.+|+|+-.|++.
T Consensus 35 ~~~d~liipG-G~~~~~~~l~~~~~l~~~-i~~~~-~~g~pilGIC~G~qlL~ 84 (184)
T TIGR03800 35 DEIDGLIIPG-GESTTLSRLLDKYGMFEP-LRNFI-LSGLPVFGTCAGLIMLA 84 (184)
T ss_pred ccCCEEEECC-CCHHHHHHHHHhccHHHH-HHHHH-HcCCcEEEECHHHHHHH
Confidence 3679999999 333211112111223232 22221 12457899999999874
Done!