Query 027202
Match_columns 226
No_of_seqs 222 out of 1079
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 6.1E-58 2.1E-62 385.2 19.3 194 16-225 2-201 (203)
2 2jcb_A 5-formyltetrahydrofolat 100.0 1E-56 3.4E-61 377.2 14.6 185 19-225 8-193 (200)
3 1ydm_A Hypothetical protein YQ 100.0 2.6E-56 9E-61 370.8 12.6 181 23-225 1-182 (187)
4 1sou_A 5,10-methenyltetrahydro 100.0 9.1E-55 3.1E-59 363.6 14.6 175 24-225 3-178 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 4E-52 1.4E-56 345.0 13.9 166 24-225 3-169 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 2.8E-50 9.6E-55 335.2 14.1 161 22-223 26-189 (189)
7 3rrl_A Succinyl-COA:3-ketoacid 43.5 37 0.0013 28.1 5.4 64 153-222 149-219 (235)
8 3cdk_A Succinyl-COA:3-ketoacid 39.4 47 0.0016 27.4 5.5 63 154-222 150-219 (241)
9 1k6d_A Acetate COA-transferase 33.9 40 0.0014 27.3 4.1 64 154-223 147-217 (220)
10 1f0y_A HCDH, L-3-hydroxyacyl-C 21.2 22 0.00074 29.8 0.2 11 171-181 288-300 (302)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=6.1e-58 Score=385.16 Aligned_cols=194 Identities=24% Similarity=0.397 Sum_probs=167.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCC
Q 027202 16 DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG 95 (226)
Q Consensus 16 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~ 95 (226)
+|++++..|++||++++++|++++++++..+|++|+++|++++.|+++++|++|+|++ +||||.+|++.+++
T Consensus 2 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------ 73 (203)
T 3hy3_A 2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------ 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH------
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH------
Confidence 4778899999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred CCCCCcEEEEeeEeCCCCceEEEEeCCCC---ccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCc
Q 027202 96 DTKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRR 172 (226)
Q Consensus 96 ~~~~gk~v~lP~v~~~~~~m~f~~~~~~~---~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~R 172 (226)
.||+|+||+|...+..|.|+.|.+.+ .|.+|.|||+||..... ..+. .....+|||||||||||++|+|
T Consensus 74 ---~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~-~~~~~~DlvlVP~vaFD~~G~R 145 (203)
T 3hy3_A 74 ---RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEA-LSTGGLDLIFMPGLGFDKHGNR 145 (203)
T ss_dssp ---TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBG-GGTTCCSEEEECCSEECTTCCE
T ss_pred ---CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----cccc-cCccCCCEEEeCCeEECCCCce
Confidence 99999999997655579999998763 57899999999975321 0111 1345799999999999999999
Q ss_pred cccCCChhhhhhhhhcC--CCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 173 LGRGGGSTKSLQRKEIG--GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 173 LG~GgGyYDR~L~~~~~--~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
||||||||||||+.++. +..+.+|||||++|+++.+| |+||+|||+|||+.+.
T Consensus 146 LG~GgGyYDR~L~~~~~~~~~~~~~igla~~~Q~~~~lP~e~hDi~ld~iiTe~~~ 201 (203)
T 3hy3_A 146 LGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYEDSS 201 (203)
T ss_dssp ECSSSCHHHHHHHHHTTTCSSCCEEEEECCGGGBCSCCCCC--CCCCSEEECC---
T ss_pred ecCCCchHHHHHHHhhhhcCCCCeEEEEecHHhccCCCCCCcccccCCEEEeCCCc
Confidence 99999999999997642 23577899999999999999 9999999999999873
No 2
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=1e-56 Score=377.15 Aligned_cols=185 Identities=19% Similarity=0.298 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 027202 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK 98 (226)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~ 98 (226)
.+.+.|++||++++++|++++++++..+|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+++
T Consensus 8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------- 76 (200)
T 2jcb_A 8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK--------- 76 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence 5789999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CCcEEEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCC
Q 027202 99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (226)
Q Consensus 99 ~gk~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgG 178 (226)
.||+|+||++...++.|.|+.|++.++|.+|.|||+||..... . ......+|+|||||||||++|+|||||||
T Consensus 77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~------~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG 149 (200)
T 2jcb_A 77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALT------E-EVNADEIDLQIVPGVAYTERGERIGYGGG 149 (200)
T ss_dssp TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGGC------E-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCccc------c-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence 9999999999765557999999998899999999999974210 0 12345789999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 179 STKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 179 yYDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
||||||+.++ ..+||+||++|+++.+| |+||+|||+|||++++
T Consensus 150 yYDR~La~~~----~~~igla~~~Q~v~~lP~e~hDi~ld~iiTe~~~ 193 (200)
T 2jcb_A 150 YYDRYLVHYK----GKTLSLAYSFQMVEHIPVEPFDKNVEKIITEKGT 193 (200)
T ss_dssp HHHHHTTTCC----SEEEEECCGGGBCSCCCCCTTCCCCSEEEETTEE
T ss_pred hHHHHHhhcC----CCEEEEEehhhccCCCCCCccCCcCCEEEECCeE
Confidence 9999999764 26899999999999999 9999999999999875
No 3
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-56 Score=370.83 Aligned_cols=181 Identities=18% Similarity=0.269 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 027202 23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK 102 (226)
Q Consensus 23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~ 102 (226)
.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+++ .||+
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~ 69 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ 69 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence 389999999999999999999999999999999999999999999999999 89999999999999 9999
Q ss_pred EEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS 182 (226)
Q Consensus 103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR 182 (226)
|+||++...++.|.|+.|++.++|.+|.|||+||..... . ......+|+|||||||||++|+|||||||||||
T Consensus 70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR 142 (187)
T 1ydm_A 70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDR 142 (187)
T ss_dssp EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCCSTTT
T ss_pred EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCccHHHH
Confidence 999998643457999999998899999999999975310 0 113457899999999999999999999999999
Q ss_pred hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
||+.++ ..+||+||++|+++.+| |+||+|||+|||+.++
T Consensus 143 ~L~~~~----~~~igla~~~Q~~~~lP~e~hD~~ld~iiTe~~~ 182 (187)
T 1ydm_A 143 YLSEYE----GKTVSLLLECQLFAHVPRLPHDIPVHKLITEDRI 182 (187)
T ss_dssp GGGTCC----SEEEEECCGGGEESCCCCCTTCCCCSEEECSSCE
T ss_pred HHHhCC----CCEEEEEeHHHhcCCCCCccccCcCCEEEECCcE
Confidence 999764 26899999999999999 9999999999999986
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=9.1e-55 Score=363.63 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (226)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (226)
|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++.+++ . |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~v 70 (194)
T 1sou_A 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KEL 70 (194)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CCE
Confidence 99999999999999999999999999999999999999999999999999 89999999999998 8 999
Q ss_pred EEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhh
Q 027202 104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSL 183 (226)
Q Consensus 104 ~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~ 183 (226)
+||++ .+ +.|.|+.|++.++|.+|.|||+||.. . . ......+|+|||||||||++|+||||||||||||
T Consensus 71 ~lP~~-~~-~~m~f~~~~~~~~L~~g~~GI~EP~~-~-------~-~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 139 (194)
T 1sou_A 71 ILPKV-EG-NEISLYRVHSPACLGVGAFGIMEPVE-G-------E-RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139 (194)
T ss_dssp EEEEE-SS-SSEEEEEESSSCCCEECSSSCEECCS-S-------E-EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHH
T ss_pred EEEEe-cC-CeeEEEEECCCCccCCCCCCCCCCCc-c-------c-cCCCCCCCEEEECCeEECCCCceeccCCcHHHHH
Confidence 99998 33 46999999998999999999999974 1 0 0133578999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 184 QRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 184 L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
|+.++ +.+||+||++|+++.+| |+||+|||+|||+.++
T Consensus 140 L~~~~----~~~igla~~~Q~v~~lP~e~hDi~ld~iiTe~~~ 178 (194)
T 1sou_A 140 LKRVK----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNV 178 (194)
T ss_dssp HHHCC----SEEEEECCGGGBCSCCCCCSCCCCCSEEECSSCE
T ss_pred HHhcC----CCEEEEEchHhccCCCCCCcccccCCEEEECCeE
Confidence 99864 36899999999999999 9999999999999875
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=4e-52 Score=345.02 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (226)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (226)
|++||++++++|++++.++ .|.+|+++|.+++.|+++++|++|+|++ +|+||.+|++ ++ . |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~v 65 (184)
T 1wkc_A 3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-ARY 65 (184)
T ss_dssp HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CEE
T ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CCE
Confidence 9999999999999999887 7889999999999999999999999999 8999999999 76 8 999
Q ss_pred EEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhh
Q 027202 104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSL 183 (226)
Q Consensus 104 ~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~ 183 (226)
+||+|..+ .|.|+.|+ +|.+|.|||+|| ... . .....+|+|||||||||++|+||||||||||||
T Consensus 66 ~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~-------~--~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 130 (184)
T 1wkc_A 66 YLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP-------P--EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRF 130 (184)
T ss_dssp EEEEEETT--EEEEEESC---CBC-------CB-CSC-------C--BCGGGCSEEEECCSEEETTSCEECCSSCHHHHH
T ss_pred EEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc-------c--CCCCCCCEEEECcEEECCCCCEeeCCccHHHHH
Confidence 99998644 69999998 899999999999 321 0 123578999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202 184 QRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL 225 (226)
Q Consensus 184 L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~ 225 (226)
|+.+. +.+||+||++|+++.+| |+||+|||+|||++++
T Consensus 131 L~~~~----~~~igl~~~~Q~~~~lp~e~hD~~ld~iiT~~~~ 169 (184)
T 1wkc_A 131 LKEVR----AATVGVVPQALLFPALPRDPWDVPVDHLATEAGV 169 (184)
T ss_dssp HHHCC----SEEEEECCGGGEESCCCCCTTCCCCSEEEETTEE
T ss_pred HHhcC----CCEEEEEchhhccCCCCCccccCccCEEEECCEE
Confidence 99763 46899999999999999 9999999999999875
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=2.8e-50 Score=335.18 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCcc-CCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 027202 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (226)
Q Consensus 22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g 100 (226)
+.|++||++++++|++++++++...|.+|+++|.+++.|+ ++++|++|+|++ +|+||.+|++.+++ .|
T Consensus 26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g 94 (189)
T 1sbq_A 26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN 94 (189)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence 3599999999999999999999999999999999999999 999999999999 89999999999998 89
Q ss_pred c-EEEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCCh
Q 027202 101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGS 179 (226)
Q Consensus 101 k-~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGy 179 (226)
| +|+||+|... +.|.|+.|++. |. ....+|||||||||||++|+||||||||
T Consensus 95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgGy 147 (189)
T 1sbq_A 95 QIRAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKGY 147 (189)
T ss_dssp TCEEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSCH
T ss_pred CCeEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCch
Confidence 9 9999999644 46999998764 11 1136899999999999999999999999
Q ss_pred hhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCC
Q 027202 180 TKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYP 223 (226)
Q Consensus 180 YDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~ 223 (226)
|||||+.++. .+.+||+||++|+++ +| |+||+|||+|||+.
T Consensus 148 YDR~La~~~~--~~~~igla~~~Q~v~-lP~e~hDiplD~IiTe~ 189 (189)
T 1sbq_A 148 YDRYLMQLTR--QQPKIGIAYSFQKGD-FLADPWDVQLDLIINDE 189 (189)
T ss_dssp HHHHGGGCCS--CCCEEEEECGGGBCC-CCCCTTSCCCSEEEECC
T ss_pred HHHHHHhcCC--CCCEEEEechHheeC-CCCCcccCcCCEEEcCC
Confidence 9999998642 367899999999999 99 99999999999984
No 7
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=43.53 E-value=37 Score=28.06 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=44.3
Q ss_pred CCCccEEEEecceecCCCC-ccccCCChhhhhhhhhcCCCCccEEEEEecccccc--cC-CcccCcc---ccEEEcC
Q 027202 153 NEPVDLFLLPGLAFDRSGR-RLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK--ES-YQLLQRT---CQLMLLY 222 (226)
Q Consensus 153 ~~~iDlviVPglAFD~~G~-RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~--~i-pe~hD~~---ld~iit~ 222 (226)
...+|+.||-+-..|++|| .++...++|+..++.... .-++=-.++++ .+ |+.-.+| +|+||-.
T Consensus 149 a~~~DvAli~a~~aD~~GN~~~~~~~~~~~~~~a~aA~------~vIveve~iv~~g~l~p~~v~ipg~~VD~VV~~ 219 (235)
T 3rrl_A 149 AITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAK------ICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKG 219 (235)
T ss_dssp CCCEEEEEEECSEEETTCCEECCGGGCTTHHHHHHTEE------EEEEEESEEECTTSSCTTTCSBCGGGCSEEEEC
T ss_pred CCCCeEEEEEeeecCCCceEEEecCcccccHHHHHhcC------EEEEEEeeccccCccCCceEEeChHHeEEEEEC
Confidence 4579999999999999998 566666788988776431 22333344444 44 4666677 9999854
No 8
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=39.38 E-value=47 Score=27.36 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=43.1
Q ss_pred CCccEEEEecceecCCCC-ccccCCChhhhhhhhhcCCCCccEEEEEecccccc--cC-CcccCc---cccEEEcC
Q 027202 154 EPVDLFLLPGLAFDRSGR-RLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK--ES-YQLLQR---TCQLMLLY 222 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~-RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~--~i-pe~hD~---~ld~iit~ 222 (226)
-.+|+.||=+-.-|+.|| .+|...++|+..++.... .+|.-+ .++++ .+ |+.-.+ -+|+||-.
T Consensus 150 l~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk----~VIveV--n~~vp~g~l~p~~v~ipg~~VD~VV~~ 219 (241)
T 3cdk_A 150 ITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK----ITIAEA--EEIVEAGELDPDHIHTPGIYVQHVVLG 219 (241)
T ss_dssp CCEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE----EEEEEE--EEEECTTSSCTTTCSBCGGGCSEEEEC
T ss_pred CCCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC----EEEEEE--eCCCCccccCCceEEeChHHeEEEEEc
Confidence 478999999999999999 888888899977766531 233322 33443 34 344455 48888854
No 9
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=33.89 E-value=40 Score=27.32 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCccEEEEecceecCCCC-ccccCCChhhhhhhhhcCCCCccEEEEEecccccc--cC-CcccCc---cccEEEcCC
Q 027202 154 EPVDLFLLPGLAFDRSGR-RLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMK--ES-YQLLQR---TCQLMLLYP 223 (226)
Q Consensus 154 ~~iDlviVPglAFD~~G~-RLG~GgGyYDR~L~~~~~~~~~~~igla~~~Q~v~--~i-pe~hD~---~ld~iit~~ 223 (226)
..+|+.||=+-.-|++|| .+|...++|+..++.... .+|. =-.++++ .+ |+.-.+ -+|+||-.+
T Consensus 147 l~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~----~VIv--eVn~~vp~~~l~p~~v~ipg~~VD~VV~~~ 217 (220)
T 1k6d_A 147 LRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD----ITLV--EPDELVETGELQPDHIVTPGAVIDHIIVSQ 217 (220)
T ss_dssp CCEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE----EEEE--EEEEEECTTCSCGGGCCBCGGGCCEEECCC
T ss_pred CCCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC----EEEE--EEccccCccccCCceEEeChHHeEEEEecC
Confidence 468999999999999999 787778999999876531 2333 2234444 34 355555 488888544
No 10
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=21.22 E-value=22 Score=29.77 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=5.6
Q ss_pred Ccccc--CCChhh
Q 027202 171 RRLGR--GGGSTK 181 (226)
Q Consensus 171 ~RLG~--GgGyYD 181 (226)
.|||. |+||||
T Consensus 288 g~~G~k~g~Gfy~ 300 (302)
T 1f0y_A 288 NKFGKKTGEGFYK 300 (302)
T ss_dssp TCCBTTTTBSSSB
T ss_pred CCCccccCcEeee
Confidence 34444 556664
Done!