RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027202
(226 letters)
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 138 bits (350), Expect = 3e-41
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
++ KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E
Sbjct: 4 AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
++T +++ I Q G K ++PR +++HM M I S ++ L S NI
Sbjct: 62 IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
+P G+ RE+ + DL +PGL FD+ G RLGRG G
Sbjct: 113 QPGE----GDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKG 151
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 137 bits (348), Expect = 5e-41
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 15 HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
H + ++K LR Q+ + + S+ + I + E + ++ + +S
Sbjct: 4 HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62
Query: 75 LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
EV+T ++ + K K++ VP+ + M IS+ D L MN+
Sbjct: 63 -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
EP P + + A+E DL ++PG+A+ G R+G GGG
Sbjct: 113 EPIP------ALTEEVNADEI-DLQIVPGVAYTERGERIGYGGG 149
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 134 bits (339), Expect = 9e-40
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + + L ++ + + K + P ++++ + IS E+ T +
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
+ Q + +G K++ +P+ M+ + D L +LEP
Sbjct: 60 IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI----- 105
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
E+ + ++ DL ++PG+ FD +G R+G GGG
Sbjct: 106 -EKTKEVNPSQI-DLMIVPGVCFDVNGFRVGFGGG 138
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 116 bits (292), Expect = 1e-32
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR +V ++ R + + P FK S+++ Y EVD + L
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
++L+ K+L +P+VE + ++ + S L + I+EP
Sbjct: 61 FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE----- 103
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
+ + + VD +PG+AFD G RLG G G
Sbjct: 104 ---GERVNPED-VDFIAVPGVAFDLEGYRLGFGKG 134
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 101 bits (255), Expect = 2e-27
Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 32/155 (20%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + R + +D S A+ +L + + + Y E++ L
Sbjct: 3 KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
+ + Y+P+V K H L +LEP
Sbjct: 58 MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT----- 95
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
DL ++PGLAFDR G RLG G G
Sbjct: 96 ----PPEDPRVL-DLVVVPGLAFDREGYRLGHGQG 125
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 86.6 bits (215), Expect = 2e-21
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 38/161 (23%)
Query: 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
K LR Q+ + ++ +SH D I + ++ + + Y E
Sbjct: 23 QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
V + L+ + + P+V ++ + I N EP
Sbjct: 81 VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEP- 121
Query: 138 PVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
N+ D FL+P + F++ RLG G G
Sbjct: 122 ---------------NQI-DCFLIPLVGFNKDNYRLGFGKG 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.009
Identities = 42/293 (14%), Positives = 87/293 (29%), Gaps = 107/293 (36%)
Query: 2 SQSNDSSNPEEKEHDLES----IFQQKR------ILRSQVR--KTLKSMDPS---LRSHE 46
S+S+ SSN + + H +++ + + K +L + V+ K + + S L +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTR 273
Query: 47 DNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVP 106
+ + A ++ + L + LL + L D +P
Sbjct: 274 FKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----------LP 319
Query: 107 RVEDKNS--HMRMF------HISSID-----------DLIANSMNILEPA---------- 137
R + + + +++ D +I +S+N+LEPA
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 138 --PVDAD-----------GNEREDVMQ-ANEPVDLFL-----------LPGLAFDRSGRR 172
P A + DVM N+ L +P + + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 173 LGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRL 225
+L R + + Y + + L+ P L
Sbjct: 440 ENE-----YALHRSIV------------------DHYNIPKTFDSDDLIPPYL 469
Score = 30.2 bits (67), Expect = 0.60
Identities = 23/193 (11%), Positives = 60/193 (31%), Gaps = 52/193 (26%)
Query: 67 CAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDD 125
C + + + + + + I+ +A + T + + + K M + F +++
Sbjct: 35 CKDVQ-DMPKSILSKEEIDHIIMSKDA--VSGTLRLFWT--LLSKQEEMVQKF----VEE 85
Query: 126 LIANSMNIL---------EPAPVDADGNEREDVMQ-ANEPVDLFLLP----------GLA 165
++ + L +P+ + E+ D + N+ + + L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 166 FDRSGRRLG-RG-GGSTKS------LQRKEIGGNPSLLLCHILCRSWMK-----ESYQLL 212
R + + G GS K+ ++ I W+ +L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKIF---WLNLKNCNSPETVL 199
Query: 213 QRTCQLMLLYPRL 225
+ L L ++
Sbjct: 200 E---MLQKLLYQI 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.12
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 32 RKTLKSMDPSLRSHEDNAIQKIVLEA 57
++ LK + SL+ + D++ + ++A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.56
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAP-----WF--KSSQRLCAYISCSALREVDTSKL 83
+ D + +I IV+ P F + +R +RE + S +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR---------IRE-NYSAM 1691
Query: 84 LSQILQIPNADGDTKTRK 101
+ + DG KT K
Sbjct: 1692 IFE----TIVDGKLKTEK 1705
Score = 27.3 bits (60), Expect = 5.9
Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 80/197 (40%)
Query: 9 NPEEK-------------EHDLESIFQQKRILRSQVRKTLKSMDPSLRS----HEDNAIQ 51
NP E+ IF+ + + K K ++ S E +
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 52 K-------I---------VLEAPWFKSSQRLCA------YISCSALR---EV----DTSK 82
+ L++ + A Y +AL +V +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVE 1784
Query: 83 LLSQILQIPNADGDTKTRKKLY---VPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPV 139
++ R VPR E S+ M IA + P V
Sbjct: 1785 VVFY-------------RGMTMQVAVPRDELGRSNYGM---------IA-----INPGRV 1817
Query: 140 DADGNEREDVMQANEPV 156
A ++ E + E V
Sbjct: 1818 AASFSQ-EALQYVVERV 1833
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport
protein, galactofuranose; HET: GZL; 1.20A {Escherichia
coli}
Length = 306
Score = 26.9 bits (60), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 120 ISSIDDLIANSMNILEPAPVDADGNER--EDVMQANEPV 156
I ++ +A ++ + APV A G E ++ A PV
Sbjct: 48 IKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPV 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,246,095
Number of extensions: 179658
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 17
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)