BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027204
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 130  ETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREI 189
            ETEKLRSD+E++R  +  E  K    + L L  E  ++R EL     E   +    D+  
Sbjct: 961  ETEKLRSDVERLR--MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 190  H 190
            H
Sbjct: 1019 H 1019


>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
           Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
           Aeruginosa
          Length = 342

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 149 IDKVTAGQRLDLNLERGRI--RDELANQNAETTNLTNKL 185
           ID   AG+ L + LERGRI  R  L   N E  +LT ++
Sbjct: 217 IDAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRI 255


>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Chaps
 pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Chaps
 pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Cymal-5
 pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
           Complex With Cymal-5
          Length = 482

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 77  ITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEK 133
           I EVL D LE +      +G +   ++  E N   F+S      E  F +LQ+ETE+
Sbjct: 147 INEVLADFLERMDELCDERGRI--PDLYSELNKWSFESICLVLYEKRFGLLQKETEE 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,197,449
Number of Sequences: 62578
Number of extensions: 173963
Number of successful extensions: 753
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 18
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)