Query 027204
Match_columns 226
No_of_seqs 134 out of 344
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnu_B Keratin, type II cytosk 94.1 0.62 2.1E-05 36.1 10.8 54 123-177 51-104 (129)
2 3tnu_A Keratin, type I cytoske 94.0 0.53 1.8E-05 36.7 10.1 53 124-177 54-106 (131)
3 3iv1_A Tumor susceptibility ge 93.2 0.53 1.8E-05 34.1 8.0 57 139-200 10-66 (78)
4 3gp4_A Transcriptional regulat 92.7 2 6.8E-05 33.6 11.7 47 22-77 25-72 (142)
5 2dfs_A Myosin-5A; myosin-V, in 89.8 11 0.00039 38.8 16.7 8 109-116 962-969 (1080)
6 3ol1_A Vimentin; structural ge 88.8 5.1 0.00018 30.6 10.4 47 104-151 17-63 (119)
7 3na7_A HP0958; flagellar bioge 88.6 10 0.00036 32.1 18.2 73 121-198 89-161 (256)
8 3mov_A Lamin-B1; LMNB1, B-type 88.0 1.2 3.9E-05 33.2 6.0 77 119-196 9-88 (95)
9 1gk4_A Vimentin; intermediate 87.2 6.5 0.00022 28.2 9.8 73 124-197 3-78 (84)
10 3lay_A Zinc resistance-associa 86.7 4.5 0.00015 33.2 9.4 74 100-196 67-140 (175)
11 3hd7_A Vesicle-associated memb 86.4 7.7 0.00026 28.2 13.0 25 130-154 6-30 (91)
12 3gpv_A Transcriptional regulat 85.5 3.6 0.00012 32.3 8.0 41 28-77 46-86 (148)
13 3ghg_A Fibrinogen alpha chain; 85.0 8.6 0.00029 36.8 11.5 18 172-189 141-158 (562)
14 3ghg_A Fibrinogen alpha chain; 84.8 8.7 0.0003 36.8 11.4 14 104-117 61-74 (562)
15 1g6u_A Domain swapped dimer; d 84.1 3.3 0.00011 26.3 5.7 37 109-145 2-43 (48)
16 1x8y_A Lamin A/C; structural p 82.1 6.5 0.00022 28.4 7.5 33 165-197 45-80 (86)
17 3lay_A Zinc resistance-associa 81.3 15 0.00052 30.0 10.3 75 64-152 67-143 (175)
18 3trt_A Vimentin; cytoskeleton, 80.6 12 0.0004 25.9 8.6 54 88-142 17-76 (77)
19 3vp9_A General transcriptional 79.2 12 0.0004 27.7 8.1 34 167-200 55-88 (92)
20 3i00_A HIP-I, huntingtin-inter 78.6 21 0.0007 27.5 10.3 28 125-152 18-45 (120)
21 2v71_A Nuclear distribution pr 76.9 31 0.0011 28.6 11.1 21 125-145 59-79 (189)
22 4h22_A Leucine-rich repeat fli 76.0 21 0.00072 26.9 8.8 54 87-141 10-63 (103)
23 3he5_A Synzip1; heterodimeric 75.5 13 0.00044 23.7 6.3 17 181-197 32-48 (49)
24 4dzn_A Coiled-coil peptide CC- 75.5 3.1 0.00011 24.5 3.2 18 186-203 8-25 (33)
25 1r8d_A Transcription activator 75.4 9.2 0.00032 28.0 6.8 37 30-75 34-70 (109)
26 4dzn_A Coiled-coil peptide CC- 75.1 4 0.00014 24.1 3.6 20 124-143 11-30 (33)
27 3oja_A Leucine-rich immune mol 74.9 31 0.001 31.3 11.6 43 52-94 305-350 (487)
28 3tnu_A Keratin, type I cytoske 74.2 27 0.00093 26.7 10.5 40 104-143 14-59 (131)
29 1q06_A Transcriptional regulat 72.5 21 0.00073 27.2 8.5 40 29-77 31-70 (135)
30 3mq9_A Bone marrow stromal ant 72.3 56 0.0019 29.4 16.2 26 175-200 442-470 (471)
31 1ez3_A Syntaxin-1A; three heli 71.6 28 0.00096 25.7 9.1 31 167-197 48-78 (127)
32 2kog_A Vesicle-associated memb 70.7 4.3 0.00015 31.2 4.0 30 131-160 35-65 (119)
33 3na7_A HP0958; flagellar bioge 69.9 49 0.0017 27.9 15.0 24 123-146 54-77 (256)
34 1r8e_A Multidrug-efflux transp 69.8 27 0.00092 29.1 9.2 37 30-75 38-74 (278)
35 1gs9_A Apolipoprotein E, APOE4 68.9 43 0.0015 26.8 10.8 21 176-196 139-159 (165)
36 3swk_A Vimentin; cytoskeleton, 68.6 30 0.001 24.8 10.1 41 110-151 3-43 (86)
37 3he5_B Synzip2; heterodimeric 68.5 13 0.00044 23.9 5.2 18 138-155 29-46 (52)
38 2vz4_A Tipal, HTH-type transcr 68.4 11 0.00036 27.7 5.7 37 30-75 33-69 (108)
39 3okq_A BUD site selection prot 68.3 43 0.0015 26.6 9.7 59 84-148 18-80 (141)
40 3hh0_A Transcriptional regulat 67.7 13 0.00044 29.0 6.3 44 23-75 28-72 (146)
41 1nfn_A Apolipoprotein E3; lipi 67.4 50 0.0017 26.9 10.1 21 134-154 104-124 (191)
42 2e7s_A RAB guanine nucleotide 66.4 22 0.00077 28.0 7.4 30 130-159 68-97 (135)
43 1deq_A Fibrinogen (alpha chain 65.7 82 0.0028 28.9 12.5 16 103-118 63-78 (390)
44 1gmj_A ATPase inhibitor; coile 65.0 35 0.0012 24.7 7.6 37 105-145 38-74 (84)
45 2jml_A DNA binding domain/tran 64.3 6.1 0.00021 27.4 3.4 45 23-76 30-76 (81)
46 3trt_A Vimentin; cytoskeleton, 64.2 32 0.0011 23.6 9.5 11 190-200 66-76 (77)
47 3ol1_A Vimentin; structural ge 63.8 27 0.00091 26.5 7.3 12 191-202 87-98 (119)
48 2yy0_A C-MYC-binding protein; 63.6 10 0.00034 25.1 4.1 24 121-144 18-41 (53)
49 3s84_A Apolipoprotein A-IV; fo 62.9 74 0.0025 27.4 19.4 20 178-197 167-186 (273)
50 2v4h_A NF-kappa-B essential mo 62.8 48 0.0017 25.2 9.1 25 121-145 75-99 (110)
51 1gs9_A Apolipoprotein E, APOE4 62.5 58 0.002 26.0 10.4 63 133-203 92-159 (165)
52 3jsv_C NF-kappa-B essential mo 62.3 38 0.0013 25.1 7.5 25 121-145 53-77 (94)
53 3he5_B Synzip2; heterodimeric 62.2 13 0.00046 23.9 4.3 11 106-116 9-19 (52)
54 1fxk_A Prefoldin; archaeal pro 62.0 41 0.0014 24.1 10.1 18 184-201 83-100 (107)
55 1d7m_A Cortexillin I; coiled-c 61.9 45 0.0016 24.6 12.2 78 90-182 15-94 (101)
56 1grj_A GREA protein; transcrip 61.5 38 0.0013 26.7 8.1 57 130-186 10-70 (158)
57 2p4v_A Transcription elongatio 60.8 37 0.0013 26.8 7.9 55 130-186 10-70 (158)
58 2l7b_A Apolipoprotein E, APO-E 60.2 27 0.00091 30.9 7.6 25 173-197 250-274 (307)
59 1t3j_A Mitofusin 1; coiled coi 59.7 24 0.00083 26.2 6.1 25 131-155 38-62 (96)
60 1s94_A S-syntaxin; three helix 59.5 56 0.0019 25.8 8.9 29 168-196 80-108 (180)
61 3vem_A Helicase protein MOM1; 59.3 58 0.002 24.9 9.3 18 127-144 37-54 (115)
62 1go4_E MAD1 (mitotic arrest de 59.1 9.9 0.00034 28.5 3.9 23 123-145 20-42 (100)
63 3qao_A LMO0526 protein, MERR-l 58.8 24 0.0008 30.0 6.8 45 22-75 26-71 (249)
64 2c5k_T Syntaxin TLG1, T-snare 57.8 20 0.00068 26.3 5.4 54 93-146 36-92 (95)
65 1deq_A Fibrinogen (alpha chain 57.8 1.1E+02 0.0039 27.9 12.4 12 174-185 146-157 (390)
66 3fxd_A Protein ICMQ; helix bun 57.7 8.7 0.0003 26.0 3.0 20 64-83 4-23 (57)
67 3a7p_A Autophagy protein 16; c 56.8 75 0.0026 25.5 9.1 24 124-147 70-93 (152)
68 2yy0_A C-MYC-binding protein; 56.3 23 0.0008 23.3 5.0 23 124-146 28-50 (53)
69 2zhg_A Redox-sensitive transcr 56.1 18 0.00062 28.4 5.3 41 27-76 39-79 (154)
70 2zqm_A Prefoldin beta subunit 55.7 56 0.0019 23.7 10.0 37 167-203 71-107 (117)
71 3ra3_B P2F; coiled coil domain 55.4 20 0.00069 20.3 3.8 22 178-199 5-26 (28)
72 3swk_A Vimentin; cytoskeleton, 55.2 19 0.00065 25.9 4.8 12 191-202 67-78 (86)
73 3s84_A Apolipoprotein A-IV; fo 54.9 1E+02 0.0035 26.5 17.6 12 106-117 65-76 (273)
74 3r2p_A Apolipoprotein A-I; amp 53.0 86 0.0029 25.0 10.8 19 178-196 146-164 (185)
75 1tu3_F RAB GTPase binding effe 52.5 19 0.00065 25.7 4.2 49 94-154 6-54 (79)
76 4gkw_A Spindle assembly abnorm 52.0 64 0.0022 25.5 7.6 25 127-151 23-47 (167)
77 3s4r_A Vimentin; alpha-helix, 49.7 71 0.0024 23.1 11.3 21 182-202 72-92 (93)
78 3sja_C Golgi to ER traffic pro 48.9 42 0.0014 23.2 5.4 41 104-144 10-54 (65)
79 3tnu_B Keratin, type II cytosk 48.3 86 0.003 23.7 11.3 23 121-143 35-57 (129)
80 2lem_A Apolipoprotein A-I; lip 47.5 1.2E+02 0.004 24.9 9.4 99 97-198 77-175 (216)
81 2a01_A Apolipoprotein A-I; fou 47.2 1.3E+02 0.0043 25.2 10.5 14 179-192 201-214 (243)
82 3ilw_A DNA gyrase subunit A; D 46.7 39 0.0013 31.8 6.6 31 117-147 411-441 (470)
83 1t3j_A Mitofusin 1; coiled coi 46.3 85 0.0029 23.2 7.2 21 134-154 30-50 (96)
84 3gee_A MNME, tRNA modification 45.5 91 0.0031 28.7 9.0 26 134-161 169-194 (476)
85 3r2p_A Apolipoprotein A-I; amp 45.3 1.1E+02 0.0039 24.3 13.9 13 105-117 87-99 (185)
86 1wt6_A Myotonin-protein kinase 45.1 83 0.0029 22.6 8.5 18 184-201 56-73 (81)
87 1cxz_B Protein (PKN); protein- 45.0 82 0.0028 22.8 6.8 15 136-150 21-35 (86)
88 3ku8_A GYRA14, DNA gyrase subu 44.1 21 0.00072 28.7 3.8 13 64-76 108-120 (156)
89 2g3q_A Protein YBL047C; endocy 44.0 19 0.00066 22.0 2.9 21 55-75 6-26 (43)
90 3oja_A Leucine-rich immune mol 43.8 1.8E+02 0.0062 26.1 15.3 13 184-196 453-465 (487)
91 1ik9_A DNA repair protein XRCC 43.6 1.4E+02 0.0048 24.8 10.8 52 123-181 154-205 (213)
92 1vg5_A RSGI RUH-014, rhomboid 43.0 48 0.0017 23.1 5.2 24 53-76 29-52 (73)
93 2zxe_G FXYD10, phospholemman-l 42.7 32 0.0011 24.4 4.1 24 201-225 16-39 (74)
94 2jp3_A FXYD domain-containing 42.5 28 0.00095 24.3 3.7 24 201-225 14-37 (67)
95 3s4r_A Vimentin; alpha-helix, 42.1 67 0.0023 23.3 6.1 11 106-116 55-65 (93)
96 2jee_A YIIU; FTSZ, septum, coi 42.1 93 0.0032 22.3 7.8 13 127-139 32-44 (81)
97 4gkw_A Spindle assembly abnorm 41.2 1.3E+02 0.0045 23.7 14.7 74 121-203 59-135 (167)
98 1cii_A Colicin IA; bacteriocin 41.0 2.4E+02 0.0083 26.8 12.7 105 76-193 321-428 (602)
99 2p2u_A HOST-nuclease inhibitor 40.9 1.4E+02 0.0047 23.9 9.3 32 123-154 17-48 (171)
100 1zhc_A Hypothetical protein HP 40.7 90 0.0031 21.7 7.2 33 106-143 6-38 (76)
101 3lpx_A GYRA, DNA gyrase, A sub 40.2 53 0.0018 31.1 6.5 13 64-76 419-431 (500)
102 1jcd_A Major outer membrane li 40.1 77 0.0026 20.8 6.0 30 174-203 9-41 (52)
103 3mq7_A Bone marrow stromal ant 40.1 1.3E+02 0.0043 23.2 11.1 32 172-203 74-108 (121)
104 1z96_A DNA-damage, UBA-domain 39.0 38 0.0013 19.9 3.7 21 55-75 6-26 (40)
105 2f23_A Anti-cleavage anti-GREA 38.5 1.1E+02 0.0039 23.8 7.4 26 161-186 45-70 (156)
106 1zvu_A Topoisomerase IV subuni 38.1 53 0.0018 32.5 6.3 65 64-178 382-446 (716)
107 2l7b_A Apolipoprotein E, APO-E 37.6 2.1E+02 0.0071 25.0 12.0 27 134-160 112-138 (307)
108 2v66_B Nuclear distribution pr 37.5 1.3E+02 0.0045 22.7 8.2 30 125-154 20-49 (111)
109 1ify_A HHR23A, UV excision rep 37.5 22 0.00074 22.7 2.4 23 54-76 9-31 (49)
110 1m1j_A Fibrinogen alpha subuni 37.2 2.7E+02 0.0092 26.2 13.2 17 172-188 142-158 (491)
111 1nfn_A Apolipoprotein E3; lipi 37.2 1.6E+02 0.0056 23.7 9.3 23 133-155 92-114 (191)
112 3sjb_C Golgi to ER traffic pro 36.4 1.1E+02 0.0037 22.5 6.4 39 104-142 27-69 (93)
113 2jo1_A Phospholemman; FXYD1, N 36.1 36 0.0012 24.0 3.5 24 201-225 13-36 (72)
114 1mul_A NS2, HU-2, DNA binding 35.8 65 0.0022 22.5 5.1 34 53-86 3-37 (90)
115 3i00_A HIP-I, huntingtin-inter 35.7 1.4E+02 0.0049 22.6 10.1 17 101-117 16-32 (120)
116 1owf_B IHF-beta, integration H 35.0 54 0.0019 23.2 4.5 34 52-85 2-37 (94)
117 2k48_A Nucleoprotein; viral pr 34.2 1.5E+02 0.0051 22.3 8.5 66 74-139 34-99 (107)
118 1owf_A IHF-alpha, integration 34.2 54 0.0019 23.5 4.5 35 51-85 3-38 (99)
119 3swy_A Cyclic nucleotide-gated 34.0 93 0.0032 19.9 5.1 32 122-153 12-43 (46)
120 3oa7_A Head morphogenesis prot 33.7 76 0.0026 26.6 5.7 36 109-145 32-67 (206)
121 2o97_B NS1, HU-1, DNA-binding 33.5 79 0.0027 22.1 5.2 34 53-86 3-37 (90)
122 1gd2_E Transcription factor PA 33.0 89 0.0031 21.6 5.2 19 127-145 48-66 (70)
123 1l8d_A DNA double-strand break 32.9 1.4E+02 0.0047 21.5 9.6 11 134-144 29-39 (112)
124 2inr_A DNA topoisomerase 4 sub 32.7 1.4E+02 0.0047 28.4 8.0 75 52-178 421-498 (514)
125 1ci6_A Transcription factor AT 32.3 1.1E+02 0.0038 20.4 6.2 17 127-143 42-58 (63)
126 3ra3_A P1C; coiled coil domain 32.0 41 0.0014 19.0 2.6 19 126-144 4-22 (28)
127 1m1j_B Fibrinogen beta chain; 31.9 3.2E+02 0.011 25.5 14.5 8 31-38 42-49 (464)
128 1bb1_B Designed, thermostable 31.4 85 0.0029 18.7 4.7 22 179-200 8-29 (36)
129 3r4h_A Coiled coil helix CC-TE 31.2 55 0.0019 19.3 3.2 19 185-203 7-25 (34)
130 1hjb_A Ccaat/enhancer binding 31.0 1.2E+02 0.0041 21.9 5.8 27 179-205 49-75 (87)
131 2np2_A HBB; protein-DNA comple 31.0 90 0.0031 22.7 5.3 36 50-85 8-49 (108)
132 3swf_A CGMP-gated cation chann 30.7 1E+02 0.0034 21.8 5.1 35 123-157 15-49 (74)
133 3a5t_A Transcription factor MA 30.6 11 0.00036 28.7 0.0 27 47-75 12-38 (107)
134 2dgc_A Protein (GCN4); basic d 30.3 61 0.0021 21.8 3.9 24 123-146 38-61 (63)
135 2dai_A Ubadc1, ubiquitin assoc 30.3 1.1E+02 0.0036 21.8 5.4 61 26-93 5-65 (83)
136 2a01_A Apolipoprotein A-I; fou 30.3 2.4E+02 0.0081 23.5 12.3 15 140-154 125-139 (243)
137 1ez3_A Syntaxin-1A; three heli 29.9 1.6E+02 0.0055 21.4 7.8 25 128-152 49-73 (127)
138 1b8z_A Protein (histonelike pr 29.9 74 0.0025 22.2 4.5 33 54-86 4-37 (90)
139 2dg6_A Putative transcriptiona 29.7 38 0.0013 28.3 3.4 47 22-77 23-71 (222)
140 3qne_A Seryl-tRNA synthetase, 29.7 3E+02 0.01 25.7 9.8 12 127-138 52-63 (485)
141 1gu4_A CAAT/enhancer binding p 29.5 1.1E+02 0.0036 21.7 5.2 23 122-144 43-65 (78)
142 1go4_E MAD1 (mitotic arrest de 29.4 58 0.002 24.3 3.9 24 122-145 12-35 (100)
143 2wt7_B Transcription factor MA 29.4 1.6E+02 0.0056 21.3 10.6 79 52-145 7-85 (90)
144 1wle_A Seryl-tRNA synthetase; 29.4 2.7E+02 0.0091 26.1 9.4 9 32-40 19-27 (501)
145 1p71_A DNA-binding protein HU; 27.9 80 0.0027 22.3 4.4 32 54-85 4-36 (94)
146 1np3_A Ketol-acid reductoisome 27.8 2.9E+02 0.0099 23.7 10.8 13 58-70 211-223 (338)
147 3kqg_A Langerin, C-type lectin 27.7 64 0.0022 24.8 4.2 37 106-147 5-41 (182)
148 3m9b_A Proteasome-associated A 27.3 96 0.0033 26.8 5.5 22 182-203 70-91 (251)
149 3rhi_A DNA-binding protein HU; 27.3 73 0.0025 22.5 4.1 34 53-86 6-40 (93)
150 2cly_B ATP synthase D chain, m 27.2 2E+02 0.0068 22.8 7.1 56 145-200 65-122 (160)
151 3c4i_A DNA-binding protein HU 27.1 83 0.0028 22.5 4.4 32 54-85 4-36 (99)
152 1wji_A Tudor domain containing 26.2 61 0.0021 21.8 3.3 22 54-75 10-31 (63)
153 2ekk_A UBA domain from E3 ubiq 26.1 29 0.001 21.7 1.5 22 55-76 11-32 (47)
154 3j21_W 50S ribosomal protein L 25.9 1.6E+02 0.0056 20.2 6.3 17 131-147 44-60 (72)
155 2iie_A Integration HOST factor 25.8 2.1E+02 0.0072 23.3 7.2 45 56-100 8-54 (204)
156 2iub_A CORA, divalent cation t 25.7 3.3E+02 0.011 23.7 15.9 26 55-80 161-188 (363)
157 3v86_A De novo design helix; c 25.6 95 0.0033 17.4 3.7 13 103-115 3-15 (27)
158 2lf0_A Uncharacterized protein 25.1 1.4E+02 0.0049 22.9 5.5 28 124-151 38-65 (123)
159 3vlc_E Golgi to ER traffic pro 25.0 52 0.0018 24.3 2.9 36 104-143 34-70 (94)
160 1t2k_D Cyclic-AMP-dependent tr 24.7 1.5E+02 0.0052 19.4 5.9 24 180-203 36-59 (61)
161 2xcs_B DNA gyrase subunit B, D 24.3 1.4E+02 0.0047 29.5 6.6 31 117-147 632-662 (692)
162 3mq9_A Bone marrow stromal ant 24.2 3.8E+02 0.013 23.8 16.1 18 171-188 445-462 (471)
163 4dci_A Uncharacterized protein 24.1 2.7E+02 0.0091 22.0 7.9 6 136-141 43-48 (150)
164 3zcc_A HAMP, osmolarity sensor 24.0 1.6E+02 0.0056 19.5 9.0 36 122-157 37-72 (114)
165 1dkg_A Nucleotide exchange fac 23.7 1.4E+02 0.0048 24.4 5.7 31 127-157 58-88 (197)
166 3o0z_A RHO-associated protein 22.9 3E+02 0.01 22.2 15.4 79 125-203 58-141 (168)
167 2ic6_A Nucleocapsid protein; h 22.6 2.1E+02 0.0072 20.3 7.4 45 95-139 25-69 (78)
168 4etp_A Kinesin-like protein KA 22.5 1.4E+02 0.0049 27.0 6.0 20 127-146 15-34 (403)
169 2p22_A Suppressor protein STP2 22.4 3.1E+02 0.011 22.2 11.2 33 168-200 51-83 (174)
170 2dak_A Ubiquitin carboxyl-term 22.3 59 0.002 21.6 2.6 22 55-76 11-32 (63)
171 2ve7_C Kinetochore protein NUF 22.2 48 0.0016 28.3 2.6 15 188-202 191-205 (250)
172 1q08_A Zn(II)-responsive regul 22.1 2E+02 0.0068 19.8 8.2 26 51-76 3-28 (99)
173 1whc_A RSGI RUH-027, UBA/UBX 3 21.9 76 0.0026 21.2 3.1 21 56-76 12-32 (64)
174 3geh_A MNME, tRNA modification 21.9 4.3E+02 0.015 24.0 9.3 13 55-67 102-114 (462)
175 3arc_J Photosystem II reaction 21.9 98 0.0033 19.3 3.3 15 205-219 10-24 (40)
176 4etp_A Kinesin-like protein KA 21.8 3.2E+02 0.011 24.6 8.2 11 128-138 9-19 (403)
177 3vkg_A Dynein heavy chain, cyt 21.7 1E+03 0.034 27.8 20.4 18 170-187 2057-2074(3245)
178 3n2f_G Na+/K+ ATPase gamma sub 21.5 75 0.0026 18.7 2.6 24 201-225 7-30 (31)
179 2cpw_A CBL-interacting protein 21.5 53 0.0018 22.1 2.2 21 56-76 22-42 (64)
180 2ic9_A Nucleocapsid protein; h 21.3 2.5E+02 0.0086 20.7 6.2 45 95-139 25-69 (96)
181 3hd7_B Syntaxin-1A; membrane p 21.1 2.5E+02 0.0085 20.5 14.1 29 169-197 49-77 (109)
182 2wvr_A Geminin; DNA replicatio 20.9 2.7E+02 0.0093 23.3 6.8 31 184-214 126-158 (209)
183 2crn_A Ubash3A protein; compac 20.9 81 0.0028 21.2 3.1 21 56-76 12-32 (64)
184 1d7m_A Cortexillin I; coiled-c 20.7 2.6E+02 0.0088 20.5 8.5 26 167-192 37-62 (101)
185 1m1j_A Fibrinogen alpha subuni 20.5 5.4E+02 0.018 24.2 12.2 37 169-205 111-150 (491)
186 1sfc_A VAMP 2, protein (synapt 20.5 2.5E+02 0.0084 20.3 8.8 24 131-154 32-55 (96)
187 4aj5_1 SKA3, spindle and kinet 20.3 2.7E+02 0.0093 20.7 10.2 16 164-179 55-70 (101)
188 2bwb_A Ubiquitin-like protein 20.2 1.4E+02 0.0046 18.7 3.9 15 56-70 10-24 (46)
189 2voy_D Sarcoplasmic/endoplasmi 20.1 74 0.0025 17.9 2.3 21 203-223 3-24 (26)
No 1
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.14 E-value=0.62 Score=36.12 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=23.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHH
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAE 177 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~k 177 (226)
++..+++....|.+.+..+++....++...++-+ .++..+..++|.+++.+-.+
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i-~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRGELALKDARNKL-AELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHH
Confidence 3344444444455555555544444444443322 23333344444444444333
No 2
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.00 E-value=0.53 Score=36.68 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHH
Q 027204 124 FSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAE 177 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~k 177 (226)
+..+++....|.+.+..+++....++...++-+ .++..+..++|.+++.+-.+
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i-~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMI-GSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443322 23333444445554444333
No 3
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=93.15 E-value=0.53 Score=34.07 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027204 139 EKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEAAK 200 (226)
Q Consensus 139 e~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs~K 200 (226)
|+|+.++++.+...++++.- -.++.+++..=..+|.++-++++.|-+.|.+.|+..|
T Consensus 10 DKLRrrl~E~~~q~qaEl~s-----LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNA-----LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788877777775542 1357788888888999999999999999999998766
No 4
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=92.70 E-value=2 Score=33.64 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred cccccC-CCCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHH
Q 027204 22 QGFNLN-YSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (226)
Q Consensus 22 ~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~al 77 (226)
.|.--| .+...|||.++ .-.++.+.+++.|.+.|||-++...++...
T Consensus 25 ~GLl~p~~r~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 25 IGLIPPIHRNESGVRKFG---------AEDLRWILFTRQMRRAGLSIEALIDYLALF 72 (142)
T ss_dssp HTSSCCCCBCTTSCBCBC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCeeeC---------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 354334 45668999887 345889999999999999999987777654
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.82 E-value=11 Score=38.77 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 027204 109 LSKFKSEV 116 (226)
Q Consensus 109 iseLR~El 116 (226)
+++|+.++
T Consensus 962 ~~~L~~~l 969 (1080)
T 2dfs_A 962 TEKLRSDV 969 (1080)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 44444443
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.80 E-value=5.1 Score=30.61 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 104 IQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDK 151 (226)
Q Consensus 104 ~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~k 151 (226)
.+.+.|..||..+..+. .+=+.+..+...++..++.++.+..+|++.
T Consensus 17 ~ye~~I~~LR~qid~~~-~e~a~l~leldn~~~~~edfk~KyE~E~~~ 63 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLT-NDKARVEVERDNLAEDIMRLREKLQEEMLQ 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666777877775433 334556666677777777777777777653
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.62 E-value=10 Score=32.14 Aligned_cols=73 Identities=10% Similarity=0.208 Sum_probs=41.3
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEA 198 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs 198 (226)
.-|+.+|..+.+.++.++..++.++.+-+.++.. +..+...........+..+.+....++..++.++.+++.
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~-----~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKR-----KSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788888887777777766554443321 112222334444555555555555555555555555553
No 8
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=88.05 E-value=1.2 Score=33.22 Aligned_cols=77 Identities=26% Similarity=0.276 Sum_probs=39.8
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHH---HHHHHHHHHHHHHHHH
Q 027204 119 SQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETT---NLTNKLDREIHALRAH 195 (226)
Q Consensus 119 ~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~---e~~~Ki~~eIa~LRte 195 (226)
.+.+.++.|++.+..|.+.+..++..+..++...++.+ .++..+..++|.+++.+-.+.+ ++..+++.||+.-|.-
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRML-TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777777776666665533 2444455556666665544433 3334566666655543
Q ss_pred H
Q 027204 196 M 196 (226)
Q Consensus 196 I 196 (226)
+
T Consensus 88 L 88 (95)
T 3mov_A 88 L 88 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.18 E-value=6.5 Score=28.15 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHH
Q 027204 124 FSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETT---NLTNKLDREIHALRAHME 197 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~---e~~~Ki~~eIa~LRteIE 197 (226)
+..+++....|.+.+..+++....++...+..+- ++..+..++|.+++.+-.+.+ ++..+++.||+.-|.-+|
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~-~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIG-RLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4455555555666666666655555554443221 233444555666665544433 344566777776665544
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=86.66 E-value=4.5 Score=33.20 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHH
Q 027204 100 KTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETT 179 (226)
Q Consensus 100 ~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~ 179 (226)
+++.+|++.+.+++.+- +.+...|+.++...+++|+..+..-+ .| .+.+..+-.+|.
T Consensus 67 nLT~EQq~ql~~I~~e~-----------r~~~~~Lr~ql~akr~EL~aL~~a~~----~D--------eakI~aL~~Ei~ 123 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDY-----------YTQTSALRQQLISKRYEYNALLTASS----PD--------TAKINAVAKEME 123 (175)
T ss_dssp -CCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHTSSS----CC--------HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhCCC----CC--------HHHHHHHHHHHH
Confidence 34556677777776664 22233344445554444444443321 12 233344444555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027204 180 NLTNKLDREIHALRAHM 196 (226)
Q Consensus 180 e~~~Ki~~eIa~LRteI 196 (226)
++..++..+-.+.+.++
T Consensus 124 ~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 124 SLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444443
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=86.40 E-value=7.7 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027204 130 ETEKLRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 130 e~e~Lk~Eie~L~~~LkeeI~kl~a 154 (226)
...+++.|++.++.-|.+-|+++..
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~ 30 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLE 30 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998854
No 12
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=85.53 E-value=3.6 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHH
Q 027204 28 YSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (226)
Q Consensus 28 ~~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~al 77 (226)
.+...|||.++ .-.+..+.+++.|.+.|||-++...++...
T Consensus 46 ~r~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 46 QRNEKGDRIFN---------EEALKYLEMILCLKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp EECTTCCEEBC---------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCCCCCeecC---------HHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 44568999887 345889999999999999999988777643
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.99 E-value=8.6 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=8.1
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 027204 172 ANQNAETTNLTNKLDREI 189 (226)
Q Consensus 172 ~~~~~kI~e~~~Ki~~eI 189 (226)
.+|..+||-++.-|++.|
T Consensus 141 edq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.79 E-value=8.7 Score=36.78 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 027204 104 IQEANLSKFKSEVQ 117 (226)
Q Consensus 104 ~~ka~iseLR~El~ 117 (226)
.++.-|.+||.++.
T Consensus 61 DltkrINELKnqLE 74 (562)
T 3ghg_A 61 DFTNRINKLKNSLF 74 (562)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHH
Confidence 44566667777664
No 15
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=84.07 E-value=3.3 Score=26.32 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhh-----hHHHhHHHHHHHHHHHHHHHHHH
Q 027204 109 LSKFKSEVQSSQEH-----HFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 109 iseLR~El~~~~k~-----e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
++.|++|+|.+.+. |.+.+.+|...|...+..|+.+|
T Consensus 2 laalkselqalkkegfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777766654 45566666555555555555544
No 16
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.13 E-value=6.5 Score=28.37 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=18.0
Q ss_pred hhhHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHH
Q 027204 165 GRIRDELANQNAET---TNLTNKLDREIHALRAHME 197 (226)
Q Consensus 165 ~r~ree~~~~~~kI---~e~~~Ki~~eIa~LRteIE 197 (226)
.++|.+++.+-.+. -++..+++.||+.-|.-+|
T Consensus 45 ~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 45 AEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33445554443333 3344567777777666555
No 17
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=81.30 E-value=15 Score=29.99 Aligned_cols=75 Identities=8% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHhHHHHHHHHHHHHHH
Q 027204 64 GVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQ--SSQEHHFSMLQRETEKLRSDIEKM 141 (226)
Q Consensus 64 Gft~~QAeai~~al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~--~~~k~e~~~lr~e~e~Lk~Eie~L 141 (226)
.+|++|-..+-++..+...+. ..+.-+..+.-.+|+..+. ..+.+.+.++..+...|+.++...
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~--------------~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQT--------------SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 588999777766655543221 1111111222223333332 123455666666666666666666
Q ss_pred HHHHHHHHHhh
Q 027204 142 RSELRYEIDKV 152 (226)
Q Consensus 142 ~~~LkeeI~kl 152 (226)
+.+++.++.+-
T Consensus 133 R~k~~~em~Ke 143 (175)
T 3lay_A 133 RVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66655555443
No 18
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=80.64 E-value=12 Score=25.94 Aligned_cols=54 Identities=9% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhHHHHHHHHHHHHHHH
Q 027204 88 VAHTFVSKGEMQKTEMIQEANLSKFKSEVQS------SQEHHFSMLQRETEKLRSDIEKMR 142 (226)
Q Consensus 88 ~~~~lvTK~dle~~~y~~ka~iseLR~El~~------~~k~e~~~lr~e~e~Lk~Eie~L~ 142 (226)
.|..++.|.- ++++.-++..+.+|...... ..+.|+..+|.....|+.||+.++
T Consensus 17 QYE~ia~knr-~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 17 QYESVAAKNL-QEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666653 33445566667777666432 124555555555555555555543
No 19
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=79.16 E-value=12 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=19.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027204 167 IRDELANQNAETTNLTNKLDREIHALRAHMEAAK 200 (226)
Q Consensus 167 ~ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs~K 200 (226)
+|.-.-+++..=..+..+-+.||+.||.++|+..
T Consensus 55 Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 55 IRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444455566778888888877643
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.57 E-value=21 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027204 125 SMLQRETEKLRSDIEKMRSELRYEIDKV 152 (226)
Q Consensus 125 ~~lr~e~e~Lk~Eie~L~~~LkeeI~kl 152 (226)
..|+.+++.|+.+++.++.+=...|..+
T Consensus 18 e~Lkreie~lk~ele~l~~E~q~~v~ql 45 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.87 E-value=31 Score=28.62 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 027204 125 SMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 125 ~~lr~e~e~Lk~Eie~L~~~L 145 (226)
..|+..+.+|+.|++..+.++
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 22
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.01 E-value=21 Score=26.91 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=27.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHH
Q 027204 87 NVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKM 141 (226)
Q Consensus 87 ~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L 141 (226)
+....|||-++|.|....+.=.+.-||..+.-.+ ..++.++.++....+|++.+
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~e-E~~aql~Re~~eK~re~e~~ 63 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE-EQLAESRRQYEEKNKEFERE 63 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456678888887765444434444444443222 23444444444444444443
No 23
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=75.53 E-value=13 Score=23.68 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027204 181 LTNKLDREIHALRAHME 197 (226)
Q Consensus 181 ~~~Ki~~eIa~LRteIE 197 (226)
+-.-++.||++||..||
T Consensus 32 liaylekeianlrkkie 48 (49)
T 3he5_A 32 LIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33445566777777665
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.45 E-value=3.1 Score=24.53 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 027204 186 DREIHALRAHMEAAKYDV 203 (226)
Q Consensus 186 ~~eIa~LRteIEs~K~d~ 203 (226)
..||+.|+.||..+|+++
T Consensus 8 kqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666654
No 25
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=75.36 E-value=9.2 Score=28.04 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 30 ~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
..+|||.++ .-.+..+.+++.|.+.|||-++...+..
T Consensus 34 ~~~g~R~Y~---------~~dl~~l~~I~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 34 TDAGYRLYS---------DADLERLQQILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp CTTCCEEBC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCeeeC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 468888877 2357888999999999999887766554
No 26
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.06 E-value=4 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 027204 124 FSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~ 143 (226)
++.|+.|...|+-||..|+|
T Consensus 11 iaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 11 IAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555544
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.87 E-value=31 Score=31.35 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=19.6
Q ss_pred cHHHHHHHHhhCC---CChHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 027204 52 DTLQLVRGLEAQG---VPSKQAEAITAAITEVLNDSLENVAHTFVS 94 (226)
Q Consensus 52 DT~~fvk~Le~aG---ft~~QAeai~~al~~~l~~~l~~~~~~lvT 94 (226)
|.+-.+++....- -..++-++-++.+..+--.|+-.+.+-.-|
T Consensus 305 ~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s 350 (487)
T 3oja_A 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350 (487)
T ss_dssp HHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcC
Confidence 5555555554432 223444555666666655555444443333
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.18 E-value=27 Score=26.71 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHh------hhhhhHHHhHHHHHHHHHHHHHHHH
Q 027204 104 IQEANLSKFKSEVQS------SQEHHFSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 104 ~~ka~iseLR~El~~------~~k~e~~~lr~e~e~Lk~Eie~L~~ 143 (226)
-++..+.+|+..... ..+.|+..+|.....|+.|++.++.
T Consensus 14 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 14 WFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555554432 2366777777777777777777643
No 29
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=72.47 E-value=21 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHH
Q 027204 29 SNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAI 77 (226)
Q Consensus 29 ~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~al 77 (226)
+...|||.++ .-.++.+.+++.|.+.|||-++...++...
T Consensus 31 r~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 31 RSENGYRTYT---------QQHLNELTLLRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp ECTTSCEECC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCCCeeeC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 4567888887 345889999999999999999888777643
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.27 E-value=56 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhH
Q 027204 175 NAETTNLTNKLDR---EIHALRAHMEAAK 200 (226)
Q Consensus 175 ~~kI~e~~~Ki~~---eIa~LRteIEs~K 200 (226)
..+|+|+++.|++ +|.+++++|+..|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777766554 3557778887765
No 31
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=71.57 E-value=28 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=14.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027204 167 IRDELANQNAETTNLTNKLDREIHALRAHME 197 (226)
Q Consensus 167 ~ree~~~~~~kI~e~~~Ki~~eIa~LRteIE 197 (226)
++.++..+-..|...-+.|...|..|..+.+
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555544544443
No 32
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=70.66 E-value=4.3 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhhhhh
Q 027204 131 TEKLRSDIEKMRSELRYEIDKVTA-GQRLDL 160 (226)
Q Consensus 131 ~e~Lk~Eie~L~~~LkeeI~kl~a-e~klDl 160 (226)
..+++.|++.++.-|.+-|+++.. +-+||.
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~ 65 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSE 65 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 455788889999999999998866 456553
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.87 E-value=49 Score=27.86 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=10.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELR 146 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~Lk 146 (226)
++..+..+..++..+|+.+++++.
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 34
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=69.80 E-value=27 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=30.4
Q ss_pred CCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 30 ~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
..+|||.++ ...+..+.+++.|.+.|||-++...++.
T Consensus 38 ~~~g~R~y~---------~~~~~~l~~i~~l~~~g~~l~~i~~~~~ 74 (278)
T 1r8e_A 38 PDTSYRYYT---------DSQLIHLDLIKSLKYIGTPLEEMKKAQD 74 (278)
T ss_dssp TTTCCEEEE---------TGGGGHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred CCCCccccC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 468999988 3458999999999999999988766654
No 35
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=68.88 E-value=43 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027204 176 AETTNLTNKLDREIHALRAHM 196 (226)
Q Consensus 176 ~kI~e~~~Ki~~eIa~LRteI 196 (226)
--+.++..++...+.+||..+
T Consensus 139 P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 139 SHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHh
Confidence 334455555555555555544
No 36
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.56 E-value=30 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 110 SKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDK 151 (226)
Q Consensus 110 seLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~k 151 (226)
.+||..+..+. .+=+.+..+...++..++..+.+..+|++.
T Consensus 3 ~eLr~qi~~l~-~e~~~l~~e~dn~~~~~edfk~KyE~E~~~ 43 (86)
T 3swk_A 3 RELRRQVDQLT-NDKARVEVERDNLAEDIMRLREKLQEEMLQ 43 (86)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543322 334455566666777777777777776654
No 37
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.51 E-value=13 Score=23.93 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 027204 138 IEKMRSELRYEIDKVTAG 155 (226)
Q Consensus 138 ie~L~~~LkeeI~kl~ae 155 (226)
++++-..|++||+.+.++
T Consensus 29 lekiianlrdeiarlene 46 (52)
T 3he5_B 29 LEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555443
No 38
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=68.43 E-value=11 Score=27.72 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 30 NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 30 ~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
..+|||.++ .-.++.+.+++.|.+.|||.++...+..
T Consensus 33 ~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 33 SHAGHRRYS---------DADLDRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp CSSCCEEBC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCCCeecC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 467898887 3357889999999999999988776654
No 39
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=68.28 E-value=43 Score=26.55 Aligned_cols=59 Identities=15% Similarity=0.305 Sum_probs=40.3
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027204 84 SLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSS----QEHHFSMLQRETEKLRSDIEKMRSELRYE 148 (226)
Q Consensus 84 ~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~----~k~e~~~lr~e~e~Lk~Eie~L~~~Lkee 148 (226)
.++..+.+++||-| ...--+..||.|+... ....+..+..++..+..|+.+|++-+..+
T Consensus 18 kL~~~sd~LvtkVD------DLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 18 ELGDLSDTLLSKVD------DLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556678888865 2334577889887643 25677778888888888888877765443
No 40
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=67.68 E-value=13 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=32.6
Q ss_pred ccccCC-CCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 23 GFNLNY-SNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 23 ~~~~~~-~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
|.=-|. +..+|||.++ .-.++.+.+++.|.+.|||-++...++.
T Consensus 28 GLl~p~~r~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 72 (146)
T 3hh0_A 28 NLLKPSDYTEGGHRLYT---------KDDLYVLQQIQSFKHLGFSLGEIQNIIL 72 (146)
T ss_dssp TSSCCSEECTTSCEEBC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCCCCeECCCCCEeeC---------HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 443343 4568999887 3458899999999999999987766543
No 41
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=67.40 E-value=50 Score=26.94 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 027204 134 LRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 134 Lk~Eie~L~~~LkeeI~kl~a 154 (226)
++.|++.|+.+|.--...++.
T Consensus 104 l~kdlEelr~kL~P~~eEL~~ 124 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQA 124 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444433
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.44 E-value=22 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027204 130 ETEKLRSDIEKMRSELRYEIDKVTAGQRLD 159 (226)
Q Consensus 130 e~e~Lk~Eie~L~~~LkeeI~kl~ae~klD 159 (226)
+..++..|++.|...|=+|-+++-++.+..
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~ 97 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARME 97 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556688999999999999999998866443
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.75 E-value=82 Score=28.87 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 027204 103 MIQEANLSKFKSEVQS 118 (226)
Q Consensus 103 y~~ka~iseLR~El~~ 118 (226)
-.++..|.+||.+|..
T Consensus 63 r~~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 63 QDFTSRINKLRDSLFN 78 (390)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4456667777777643
No 44
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=64.98 E-value=35 Score=24.74 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 027204 105 QEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 105 ~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
++..+..||..+ ..++.....+++.++.+|+..+..+
T Consensus 38 ekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 38 AKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788776 3455556666666666666655553
No 45
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=64.27 E-value=6.1 Score=27.44 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=32.7
Q ss_pred ccccCCCCC-cCcccccccccCCCCcceeccHHHHHHHHh-hCCCChHHHHHHHHH
Q 027204 23 GFNLNYSNT-IGYRQISQLVKSNGKRAFLVDTLQLVRGLE-AQGVPSKQAEAITAA 76 (226)
Q Consensus 23 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le-~aGft~~QAeai~~a 76 (226)
|+--|.+.. .|||.++ ...++.+.+++.|. +.|||-+++..++..
T Consensus 30 gl~~p~r~~~~g~R~Y~---------~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~ 76 (81)
T 2jml_A 30 GFPRPLRSEGNNYRVYS---------REEVEAVRRVARLIQEEGLSVSEAIAQVKT 76 (81)
T ss_dssp CCSCCBSSSCSSSCEEC---------HHHHHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCeeecC---------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 433344444 7788877 34578899999999 999999888776653
No 46
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=64.20 E-value=32 Score=23.62 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.0
Q ss_pred HHHHHHHHHhH
Q 027204 190 HALRAHMEAAK 200 (226)
Q Consensus 190 a~LRteIEs~K 200 (226)
..|..+|+++|
T Consensus 66 q~L~~el~slk 76 (77)
T 3trt_A 66 QSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 45555555554
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.79 E-value=27 Score=26.50 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHhHHH
Q 027204 191 ALRAHMEAAKYD 202 (226)
Q Consensus 191 ~LRteIEs~K~d 202 (226)
+|.+++++++-+
T Consensus 87 dLE~~iesL~eE 98 (119)
T 3ol1_A 87 DLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.60 E-value=10 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=12.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRSE 144 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~~ 144 (226)
.+|...|+.|++.|+..++.|..+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444
No 49
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=62.93 E-value=74 Score=27.39 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027204 178 TTNLTNKLDREIHALRAHME 197 (226)
Q Consensus 178 I~e~~~Ki~~eIa~LRteIE 197 (226)
.+++..++..-+.+||..++
T Consensus 167 a~~L~~~l~~~~eeLr~~L~ 186 (273)
T 3s84_A 167 AEELKARISASAEELRQRLA 186 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.76 E-value=48 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
+.||.+=|+..+++..|.+.|..++
T Consensus 75 ~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 75 KADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhHHHHHhHHHHHHHHH
Confidence 5778888888888888877776554
No 51
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=62.50 E-value=58 Score=26.02 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH-HhhHHHHHHHHHHHHHHHHHHHH----HHHHhHHHH
Q 027204 133 KLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDEL-ANQNAETTNLTNKLDREIHALRA----HMEAAKYDV 203 (226)
Q Consensus 133 ~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~-~~~~~kI~e~~~Ki~~eIa~LRt----eIEs~K~d~ 203 (226)
++..+.+.|+++|..++..+++.+.-- .+++ +.+...+.++..++.--+.+|++ ++|.++..+
T Consensus 92 ~l~~~~e~Lr~~L~~d~EelR~~l~p~--------~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 92 RLSKELQAAQARLGADMEDVRGRLVQY--------RGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 355555555666555555555432211 1111 22233345666666666665544 444444433
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.28 E-value=38 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=17.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
++||.+=|+..+++..+.+.|...+
T Consensus 53 ~~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 53 KADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5677777777777777766665543
No 53
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.20 E-value=13 Score=23.87 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 027204 106 EANLSKFKSEV 116 (226)
Q Consensus 106 ka~iseLR~El 116 (226)
+..|+.|+++-
T Consensus 9 rkkiarlkkdn 19 (52)
T 3he5_B 9 RKKIARLKKDN 19 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 34455555553
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.05 E-value=41 Score=24.12 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 027204 184 KLDREIHALRAHMEAAKY 201 (226)
Q Consensus 184 Ki~~eIa~LRteIEs~K~ 201 (226)
+++..+..++.+++..|.
T Consensus 83 ~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555543
No 55
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=61.88 E-value=45 Score=24.59 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=45.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhhhhh
Q 027204 90 HTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAG--QRLDLNLERGRI 167 (226)
Q Consensus 90 ~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae--~klDlNleK~r~ 167 (226)
+.-+|++++-...-+.+..++.||++ ++.-..-|..+..++-+.+..+..+ .|+|+..+-+.+
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e---------------~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKt 79 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESE---------------GAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhh
Confidence 34445555544443444444444444 4444444555555555555444433 677888888888
Q ss_pred HHHHHhhHHHHHHHH
Q 027204 168 RDELANQNAETTNLT 182 (226)
Q Consensus 168 ree~~~~~~kI~e~~ 182 (226)
..+-+.++.+++|..
T Consensus 80 EKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 80 EKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhh
Confidence 888888887777654
No 56
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=61.47 E-value=38 Score=26.74 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhh--hhhhhhhHHHHHhhHHHHHHHHHHHH
Q 027204 130 ETEKLRSDIEKMRSELRYEIDKVTAGQR--LDL--NLERGRIRDELANQNAETTNLTNKLD 186 (226)
Q Consensus 130 e~e~Lk~Eie~L~~~LkeeI~kl~ae~k--lDl--NleK~r~ree~~~~~~kI~e~~~Ki~ 186 (226)
-.++|+.|++.|+..-+-+|...-++.+ .|+ |.+-.-.|+++..++.+|.+++.++.
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~ 70 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 70 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3556777777777644444443333222 333 44445567777777777777777654
No 57
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=60.84 E-value=37 Score=26.84 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhh--hhhhhhhHHHHHhhHHHHHHHHHHHH
Q 027204 130 ETEKLRSDIEKMRSE----LRYEIDKVTAGQRLDL--NLERGRIRDELANQNAETTNLTNKLD 186 (226)
Q Consensus 130 e~e~Lk~Eie~L~~~----LkeeI~kl~ae~klDl--NleK~r~ree~~~~~~kI~e~~~Ki~ 186 (226)
-.++|+.|++.|+.. +.+.|...++ ..|+ |.+=.-.|+++..++.+|.+++.++.
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~--~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAAS--LGDRSENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHH--HSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--CCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777653 3334443433 2333 33333346666666666666666543
No 58
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=60.22 E-value=27 Score=30.87 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027204 173 NQNAETTNLTNKLDREIHALRAHME 197 (226)
Q Consensus 173 ~~~~kI~e~~~Ki~~eIa~LRteIE 197 (226)
.++....++..++..-+.+||..++
T Consensus 250 ql~~~aeel~~kl~~~~eeLr~~l~ 274 (307)
T 2l7b_A 250 KLEEQAQQIRLQAEAAQARLKSRFE 274 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHhh
Confidence 3345555566666655666665554
No 59
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=59.68 E-value=24 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 027204 131 TEKLRSDIEKMRSELRYEIDKVTAG 155 (226)
Q Consensus 131 ~e~Lk~Eie~L~~~LkeeI~kl~ae 155 (226)
..+|.+.++..+++|++||..+..+
T Consensus 38 farLc~~Vd~t~~eL~~EI~~L~~e 62 (96)
T 1t3j_A 38 FARLCQQVDMTQKHLEEEIARLSKE 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777888888888888877554
No 60
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=59.50 E-value=56 Score=25.85 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027204 168 RDELANQNAETTNLTNKLDREIHALRAHM 196 (226)
Q Consensus 168 ree~~~~~~kI~e~~~Ki~~eIa~LRteI 196 (226)
+.++..+-..|..+-+.|...|..|..++
T Consensus 80 k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 80 KEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 61
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=59.33 E-value=58 Score=24.95 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDIEKMRSE 144 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~~ 144 (226)
|..|.++|+.+-+.+...
T Consensus 37 L~~ELeRLr~~~d~~~K~ 54 (115)
T 3vem_A 37 FLHELEKLRRESENSKKT 54 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.08 E-value=9.9 Score=28.53 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=16.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Q 027204 123 HFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
++..|+.|+++|+.+++.|+.+|
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777665
No 63
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=58.75 E-value=24 Score=29.98 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=33.5
Q ss_pred cccccCCC-CCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 22 QGFNLNYS-NTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 22 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
.|.=-|.+ ..+|||.++ .-.++.+.+++.|.+.|||-++...++.
T Consensus 26 ~GLL~p~~~~~~GyR~Y~---------~~dl~~L~~I~~lr~~G~sL~eIk~~l~ 71 (249)
T 3qao_A 26 IGLLVPQKDDWNGYRIYS---------EKDVDKLQQILFFKELDFPLKKIQQILD 71 (249)
T ss_dssp TTSSCCEECTTTCCEEBC---------HHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCceECCCCCeeeC---------HHHHHHHHHHHHHHHCCCCHHHHHHHhc
Confidence 44433443 578899887 3458899999999999999988766654
No 64
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=57.78 E-value=20 Score=26.31 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHhHHHHHHHHHHHHHHHHHHH
Q 027204 93 VSKGEMQKTEMIQEANLSKFKSEVQSSQEH---HFSMLQRETEKLRSDIEKMRSELR 146 (226)
Q Consensus 93 vTK~dle~~~y~~ka~iseLR~El~~~~k~---e~~~lr~e~e~Lk~Eie~L~~~Lk 146 (226)
-++.|+++.--....++.+|+.-+.+++++ |+..-+.-...++++|+.|+.++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666556677777777777665433 344445555556666666655543
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.77 E-value=1.1e+02 Score=27.92 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 027204 174 QNAETTNLTNKL 185 (226)
Q Consensus 174 ~~~kI~e~~~Ki 185 (226)
|..+|+-++..|
T Consensus 146 q~~kiqRLE~~I 157 (390)
T 1deq_A 146 QLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 66
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=57.74 E-value=8.7 Score=25.99 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHHHHHHHh
Q 027204 64 GVPSKQAEAITAAITEVLND 83 (226)
Q Consensus 64 Gft~~QAeai~~al~~~l~~ 83 (226)
-+|++|+++|.+++.+++..
T Consensus 4 ~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHc
Confidence 47999999999999998753
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.79 E-value=75 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 027204 124 FSMLQRETEKLRSDIEKMRSELRY 147 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~~Lke 147 (226)
+..|+++...++.+|..++..+++
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666665555444
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.32 E-value=23 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 027204 124 FSMLQRETEKLRSDIEKMRSELR 146 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~~Lk 146 (226)
.+.|+.+++.|+.+++.++++|.
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677777777776653
No 69
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=56.13 E-value=18 Score=28.42 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHH
Q 027204 27 NYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 27 ~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~a 76 (226)
|.+..+|||.++ .-.+..+.+++.|.+.|||-++...++..
T Consensus 39 p~r~~~g~R~Y~---------~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 39 SIRNSGNQRRYK---------RDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp CEECTTSCEEBC---------TTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred cccCCCCCEEeC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 444557888877 23578899999999999999887766653
No 70
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.71 E-value=56 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=17.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027204 167 IRDELANQNAETTNLTNKLDREIHALRAHMEAAKYDV 203 (226)
Q Consensus 167 ~ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs~K~d~ 203 (226)
+...+......|...-.++...+..+..+++..|..+
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444555666666555444
No 71
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.40 E-value=20 Score=20.32 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027204 178 TTNLTNKLDREIHALRAHMEAA 199 (226)
Q Consensus 178 I~e~~~Ki~~eIa~LRteIEs~ 199 (226)
+.+-|.++..||+.|..||..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4556777888888888887654
No 72
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=55.19 E-value=19 Score=25.93 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.8
Q ss_pred HHHHHHHHhHHH
Q 027204 191 ALRAHMEAAKYD 202 (226)
Q Consensus 191 ~LRteIEs~K~d 202 (226)
+|.++||+++-+
T Consensus 67 dLE~kvesL~eE 78 (86)
T 3swk_A 67 DLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455555444
No 73
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.88 E-value=1e+02 Score=26.48 Aligned_cols=12 Identities=0% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027204 106 EANLSKFKSEVQ 117 (226)
Q Consensus 106 ka~iseLR~El~ 117 (226)
..+..+||..+.
T Consensus 65 ~~~~eelr~kL~ 76 (273)
T 3s84_A 65 NTQAEQLRRQLT 76 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 74
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=53.04 E-value=86 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027204 178 TTNLTNKLDREIHALRAHM 196 (226)
Q Consensus 178 I~e~~~Ki~~eIa~LRteI 196 (226)
..++..++..-+.+||+.+
T Consensus 146 ~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 146 GEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666653
No 75
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=52.52 E-value=19 Score=25.71 Aligned_cols=49 Identities=12% Similarity=0.388 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027204 94 SKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 94 TK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~a 154 (226)
.|+.++.....++..+..|+.|+.. .+.+++|+=+|-+.|.-.+.+++.
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdt------------sE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDV------------SEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp ---------------CHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666677777778777753 457889999999988888888876
No 76
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.00 E-value=64 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 127 LQRETEKLRSDIEKMRSELRYEIDK 151 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~~LkeeI~k 151 (226)
+..+.+..+.|++.+-.-|++|-.+
T Consensus 23 ~~~eleEnqeEL~iVgkML~EEqgK 47 (167)
T 4gkw_A 23 LQKQLEENQEELEIVGNMLREEQGK 47 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555554333
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.66 E-value=71 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 027204 182 TNKLDREIHALRAHMEAAKYD 202 (226)
Q Consensus 182 ~~Ki~~eIa~LRteIEs~K~d 202 (226)
+.++..++.+|..+++..|+.
T Consensus 72 k~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 72 KARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777653
No 78
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=48.86 E-value=42 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhh-hhhhHH---HhHHHHHHHHHHHHHHHHH
Q 027204 104 IQEANLSKFKSEVQSS-QEHHFS---MLQRETEKLRSDIEKMRSE 144 (226)
Q Consensus 104 ~~ka~iseLR~El~~~-~k~e~~---~lr~e~e~Lk~Eie~L~~~ 144 (226)
+.+..+-+||.|+... .-.+|+ .|+...++|..|++++...
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788889998653 356664 3444444444444444433
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.31 E-value=86 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=15.4
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~ 143 (226)
|.|+..+|.....|+.|++.++.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~ 57 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666677777777777776643
No 80
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=47.46 E-value=1.2e+02 Score=24.94 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHH
Q 027204 97 EMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNA 176 (226)
Q Consensus 97 dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~ 176 (226)
+.+.+......++.++|..+......=-..++...+.++..+.-.-.+|++.+.+--.+++--+----.++| ..++.
T Consensus 77 ~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr---~kl~~ 153 (216)
T 2lem_A 77 ETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFR---DRMRT 153 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHH---HHHHH
T ss_pred HHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027204 177 ETTNLTNKLDREIHALRAHMEA 198 (226)
Q Consensus 177 kI~e~~~Ki~~eIa~LRteIEs 198 (226)
.+.++...+.--..++|+.|+.
T Consensus 154 ~~e~lk~~l~P~~ee~~~kl~~ 175 (216)
T 2lem_A 154 HVDSLRTQLAPHSEQMRESLAQ 175 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhHHHHHHHHHH
No 81
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=47.20 E-value=1.3e+02 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 027204 179 TNLTNKLDREIHAL 192 (226)
Q Consensus 179 ~e~~~Ki~~eIa~L 192 (226)
+++..+++--+.+|
T Consensus 201 e~lr~~l~p~~e~l 214 (243)
T 2a01_A 201 STLSEKAKPALEDL 214 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHH
Confidence 33333333333333
No 82
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=46.70 E-value=39 Score=31.79 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=20.8
Q ss_pred HhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 027204 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (226)
Q Consensus 117 ~~~~k~e~~~lr~e~e~Lk~Eie~L~~~Lke 147 (226)
..+.+-|...++.|.+.|+.+++.++.-|..
T Consensus 411 ~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~ 441 (470)
T 3ilw_A 411 RRLAALERQRIIDDLAKIEAEIADLEDILAK 441 (470)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455667777777777777777777665544
No 83
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=46.34 E-value=85 Score=23.21 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 027204 134 LRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 134 Lk~Eie~L~~~LkeeI~kl~a 154 (226)
+++|++..-.+|...+.....
T Consensus 30 VQqELs~tfarLc~~Vd~t~~ 50 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQK 50 (96)
T ss_dssp -----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544
No 84
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=45.47 E-value=91 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 027204 134 LRSDIEKMRSELRYEIDKVTAGQRLDLN 161 (226)
Q Consensus 134 Lk~Eie~L~~~LkeeI~kl~ae~klDlN 161 (226)
+.+.++.++++|.+-+..+ +..+|+.
T Consensus 169 ls~~i~~lr~~L~~~~a~i--ea~iDf~ 194 (476)
T 3gee_A 169 LSVRLGGLREQLIRSCALI--ELELDFS 194 (476)
T ss_dssp HHHHHHHHHTHHHHHHHTT--TTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHh--heecCCC
Confidence 4455666666555555544 3445553
No 85
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=45.32 E-value=1.1e+02 Score=24.26 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 027204 105 QEANLSKFKSEVQ 117 (226)
Q Consensus 105 ~ka~iseLR~El~ 117 (226)
...++.++|..+.
T Consensus 87 l~kdlee~r~~l~ 99 (185)
T 3r2p_A 87 MSKDLEEVKAKVQ 99 (185)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 3444445554443
No 86
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.13 E-value=83 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 027204 184 KLDREIHALRAHMEAAKY 201 (226)
Q Consensus 184 Ki~~eIa~LRteIEs~K~ 201 (226)
.+..++..|+.+|+.++.
T Consensus 56 eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 56 DLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 345556677777776543
No 87
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=45.03 E-value=82 Score=22.82 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027204 136 SDIEKMRSELRYEID 150 (226)
Q Consensus 136 ~Eie~L~~~LkeeI~ 150 (226)
..++..+..|+++|.
T Consensus 21 ~~le~~r~~ir~eI~ 35 (86)
T 1cxz_B 21 QQLELERERLRREIR 35 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 88
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=44.10 E-value=21 Score=28.70 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHH
Q 027204 64 GVPSKQAEAITAA 76 (226)
Q Consensus 64 Gft~~QAeai~~a 76 (226)
|||+.||++|.+.
T Consensus 108 ~LSe~QA~AILdm 120 (156)
T 3ku8_A 108 YLTEQQAQAILDL 120 (156)
T ss_dssp ECCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHh
Confidence 6999999999874
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.03 E-value=19 Score=22.01 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 027204 55 QLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 55 ~fvk~Le~aGft~~QAeai~~ 75 (226)
.-+++|.+-||++++|.....
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~ 26 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALE 26 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 458999999999999865443
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.83 E-value=1.8e+02 Score=26.11 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 027204 184 KLDREIHALRAHM 196 (226)
Q Consensus 184 Ki~~eIa~LRteI 196 (226)
+..-++.++..+|
T Consensus 453 ~~~~~~~~~~~~~ 465 (487)
T 3oja_A 453 RLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh
Confidence 3333333333333
No 91
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.65 E-value=1.4e+02 Score=24.80 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=25.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHHHH
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNL 181 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~e~ 181 (226)
++..+..+++++..+-+.++..|-.-+..+ +|--|..+|+....+....++.
T Consensus 154 ~~~~l~~qlE~~v~~K~~~E~~L~~KF~~l-------LNeKK~KIR~lq~~Ll~~~~~~ 205 (213)
T 1ik9_A 154 DWNDVQGRFEKAVSAKEALETDLYKRFILV-------LNEKKTKIRSLHNKLLNAAQER 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555544444444 4555555555554444444433
No 92
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=42.98 E-value=48 Score=23.14 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHH
Q 027204 53 TLQLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 53 T~~fvk~Le~aGft~~QAeai~~a 76 (226)
.-.-|++|.+-||++++|+.....
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345789999999999999765553
No 93
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=42.75 E-value=32 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 201 YDVIKYCIGTLVSISAVGLAIVRIL 225 (226)
Q Consensus 201 ~d~lrwliG~v~~~~al~la~~rl~ 225 (226)
|+++|- .|++++.+.+++|++-++
T Consensus 16 Y~tLRi-gGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 16 YYRLRV-VGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred hHHhee-ccchhHHHHHHHHHHHHH
Confidence 556654 789999999999988665
No 94
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=42.47 E-value=28 Score=24.26 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 201 YDVIKYCIGTLVSISAVGLAIVRIL 225 (226)
Q Consensus 201 ~d~lrwliG~v~~~~al~la~~rl~ 225 (226)
|+++|- .|++++.+.+++|++-++
T Consensus 14 Y~tLRi-gGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 14 WESLQL-GGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHhee-cchhhHHHHHHHHHHHHH
Confidence 455554 789999998888887665
No 95
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.13 E-value=67 Score=23.27 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027204 106 EANLSKFKSEV 116 (226)
Q Consensus 106 ka~iseLR~El 116 (226)
.+.|.+||..+
T Consensus 55 e~~i~~Lr~~i 65 (93)
T 3s4r_A 55 EEEMRELRRQV 65 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.10 E-value=93 Score=22.30 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDIE 139 (226)
Q Consensus 127 lr~e~e~Lk~Eie 139 (226)
|+.++..|..+.+
T Consensus 32 LKekN~~L~~e~~ 44 (81)
T 2jee_A 32 LKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 97
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.15 E-value=1.3e+02 Score=23.73 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=41.3
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHH
Q 027204 121 EHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLT---NKLDREIHALRAHME 197 (226)
Q Consensus 121 k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI~e~~---~Ki~~eIa~LRteIE 197 (226)
.-|+..||++++.+++.+++..+.|+-.-..- +...+|+ + ..|+. +..+.|-. .-++.-|+.||.++|
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQ-nQQSlDi--R--KLrEL----EADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ-NQQSLDM--R--KLGEL----EADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--H--HTHHH----HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHH-hHhhhhH--H--HHHHH----HhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877775431111 1122333 1 12222 22222222 235667888999888
Q ss_pred HhHHHH
Q 027204 198 AAKYDV 203 (226)
Q Consensus 198 s~K~d~ 203 (226)
.-|..+
T Consensus 130 dEklK~ 135 (167)
T 4gkw_A 130 NEKLKA 135 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 98
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=40.96 E-value=2.4e+02 Score=26.75 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=50.3
Q ss_pred HHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHH---HHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027204 76 AITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLS---KFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKV 152 (226)
Q Consensus 76 al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~is---eLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl 152 (226)
.-+.++++. ..+|| +|+|...--+++..+ .||.- ..--++|++.+.+....+++-+..+..+.+.-=..+
T Consensus 321 ~~~~~~~~~-----~~~~~-~~ve~~Kki~naevae~~~lrQR-lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l 393 (602)
T 1cii_A 321 YKRNILNDR-----NPVVT-EDVEGDKKIYNAEVAEWDKLRQR-LLDARNKITSAESAVNSARNNLSARTNEQKHANDAL 393 (602)
T ss_dssp HHHHTSCCC-----CSCCS-SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcCC-----CCcch-hhhhhHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555542 33444 667777777766655 46633 112244444444444444444444444432211111
Q ss_pred hhhhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027204 153 TAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALR 193 (226)
Q Consensus 153 ~ae~klDlNleK~r~ree~~~~~~kI~e~~~Ki~~eIa~LR 193 (226)
.+ +--+|..++......+.+|.|-..|.+ |...++
T Consensus 394 ~a-----~~kek~~~~n~~a~~~~KiAE~KrK~d-E~~aIK 428 (602)
T 1cii_A 394 NA-----LLKEKENIRNQLSGINQKIAEEKRKQD-ELKATK 428 (602)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HH-----HHHHHHHHHHHhhhhhhHHHHHHHhhh-HHHHHH
Confidence 11 113455555556666666666665544 444443
No 99
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=40.89 E-value=1.4e+02 Score=23.86 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=20.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~a 154 (226)
+...-=.++..+++++..+...++++|+.++.
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~ 48 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKA 48 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566777777777777777777754
No 100
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=40.67 E-value=90 Score=21.71 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 027204 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 106 ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~ 143 (226)
+..|++|+.+ ..+|+.|..+...|-.+|..+..
T Consensus 6 ~d~I~~Lk~~-----d~~f~~L~~eH~~LD~~I~~le~ 38 (76)
T 1zhc_A 6 RDEISVLKAN-----NPHFDKIFEKHNQLDDDIKTAEQ 38 (76)
T ss_dssp HHHHHHSTTT-----STTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666655 67888888888888888887754
No 101
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=40.24 E-value=53 Score=31.13 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.6
Q ss_pred CCChHHHHHHHHH
Q 027204 64 GVPSKQAEAITAA 76 (226)
Q Consensus 64 Gft~~QAeai~~a 76 (226)
|||+.||++|.+.
T Consensus 419 ~lse~Qa~aIl~m 431 (500)
T 3lpx_A 419 YLTAEQAKAIVDL 431 (500)
T ss_dssp --CHHHHHHHHTC
T ss_pred CCCHHHHHHHHHh
Confidence 6899999999874
No 102
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.14 E-value=77 Score=20.80 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHhHHHH
Q 027204 174 QNAETTNLTNKLDR---EIHALRAHMEAAKYDV 203 (226)
Q Consensus 174 ~~~kI~e~~~Ki~~---eIa~LRteIEs~K~d~ 203 (226)
+..+++++++|++. +++.||.++...|-+.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444332 4446666666666554
No 103
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.08 E-value=1.3e+02 Score=23.19 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHH---HHHHHHHHHHHHhHHHH
Q 027204 172 ANQNAETTNLTNKLD---REIHALRAHMEAAKYDV 203 (226)
Q Consensus 172 ~~~~~kI~e~~~Ki~---~eIa~LRteIEs~K~d~ 203 (226)
+.++-+|..+|.++. .++..||.+.+..+|.+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 333344444444332 33446777777666654
No 104
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=38.99 E-value=38 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 027204 55 QLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 55 ~fvk~Le~aGft~~QAeai~~ 75 (226)
..+++|..-||++++|.....
T Consensus 6 ~~i~~L~~mGf~~~~a~~AL~ 26 (40)
T 1z96_A 6 SKIAQLVSMGFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 468899999999999965433
No 105
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=38.47 E-value=1.1e+02 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=19.0
Q ss_pred hhhhhhhHHHHHhhHHHHHHHHHHHH
Q 027204 161 NLERGRIRDELANQNAETTNLTNKLD 186 (226)
Q Consensus 161 NleK~r~ree~~~~~~kI~e~~~Ki~ 186 (226)
|.+-...|+++..++.+|++++.++.
T Consensus 45 naey~aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 45 DSGLEAAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677788888888888777665
No 106
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=38.15 E-value=53 Score=32.51 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 027204 64 GVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 64 Gft~~QAeai~~al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~ 143 (226)
+||+.||++|.+. -|..+.+-|...++.|.+.|..+|+.|+.
T Consensus 382 ~lse~QA~aIL~m--------------------------------------rL~rLt~le~~kl~~E~~eL~~~i~~l~~ 423 (716)
T 1zvu_A 382 GLTETQAEAILEL--------------------------------------KLRHLAKLEEMKIRGEQSELEKERDQLQG 423 (716)
T ss_dssp TCCTTHHHHHHTC--------------------------------------CGGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhh--------------------------------------HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhHHHH
Q 027204 144 ELRYEIDKVTAGQRLDLNLERGRIRDELANQNAET 178 (226)
Q Consensus 144 ~LkeeI~kl~ae~klDlNleK~r~ree~~~~~~kI 178 (226)
-|..+-.-.+- +++|+.+...+.
T Consensus 424 iL~~~~~l~~~------------i~~EL~~i~~ky 446 (716)
T 1zvu_A 424 ILASERKMNNL------------LKKELQADAQAY 446 (716)
T ss_dssp HHHCHHHHHHH------------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHH------------HHHHHHHHHHHh
No 107
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=37.62 E-value=2.1e+02 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 027204 134 LRSDIEKMRSELRYEIDKVTAGQRLDL 160 (226)
Q Consensus 134 Lk~Eie~L~~~LkeeI~kl~ae~klDl 160 (226)
|..+++.++++|.--...++.-+.-++
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~ 138 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQST 138 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555555555444444
No 108
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.55 E-value=1.3e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027204 125 SMLQRETEKLRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 125 ~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~a 154 (226)
..++..+...+.|-...-+.|..|+.+++.
T Consensus 20 e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 20 EALKEKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555544
No 109
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.53 E-value=22 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCChHHHHHHHHH
Q 027204 54 LQLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 54 ~~fvk~Le~aGft~~QAeai~~a 76 (226)
-.-+++|.+-||++++|.....+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34589999999999999765553
No 110
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.17 E-value=2.7e+02 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=7.6
Q ss_pred HhhHHHHHHHHHHHHHH
Q 027204 172 ANQNAETTNLTNKLDRE 188 (226)
Q Consensus 172 ~~~~~kI~e~~~Ki~~e 188 (226)
.++..+|+-++.-|++.
T Consensus 142 ~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 142 QEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 111
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=37.16 E-value=1.6e+02 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 027204 133 KLRSDIEKMRSELRYEIDKVTAG 155 (226)
Q Consensus 133 ~Lk~Eie~L~~~LkeeI~kl~ae 155 (226)
+|..+++.++++++.++..+++.
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~k 114 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGR 114 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777663
No 112
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.42 E-value=1.1e+02 Score=22.52 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhh-hhhhHH---HhHHHHHHHHHHHHHHH
Q 027204 104 IQEANLSKFKSEVQSS-QEHHFS---MLQRETEKLRSDIEKMR 142 (226)
Q Consensus 104 ~~ka~iseLR~El~~~-~k~e~~---~lr~e~e~Lk~Eie~L~ 142 (226)
+.+..+-+||.|+... .-.||+ .|+...++|..|+++++
T Consensus 27 ~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 27 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899998653 356664 34444444444444443
No 113
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=36.13 E-value=36 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 201 YDVIKYCIGTLVSISAVGLAIVRIL 225 (226)
Q Consensus 201 ~d~lrwliG~v~~~~al~la~~rl~ 225 (226)
|+++|- .|++++.+.+++|++-++
T Consensus 13 Y~tLRi-GGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 13 YQSLQI-GGLVIAGILFILGILIVL 36 (72)
T ss_dssp THHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHhhc-cchHHHHHHHHHHHHHHH
Confidence 455554 688888888888887654
No 114
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=35.80 E-value=65 Score=22.54 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 027204 53 TLQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (226)
Q Consensus 53 T~~fvk~L-e~aGft~~QAeai~~al~~~l~~~l~ 86 (226)
.-.+++.+ +..|++..+|+.+++++-+.+.+.|.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLK 37 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34566666 46789999999999999988877653
No 115
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.71 E-value=1.4e+02 Score=22.63 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027204 101 TEMIQEANLSKFKSEVQ 117 (226)
Q Consensus 101 ~~y~~ka~iseLR~El~ 117 (226)
+.-.++..+..||.++.
T Consensus 16 ~Ie~Lkreie~lk~ele 32 (120)
T 3i00_A 16 LIERLYREISGLKAQLE 32 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555555555554
No 116
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=34.96 E-value=54 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=27.2
Q ss_pred cHHHHHHHHh-h-CCCChHHHHHHHHHHHHHHHhhH
Q 027204 52 DTLQLVRGLE-A-QGVPSKQAEAITAAITEVLNDSL 85 (226)
Q Consensus 52 DT~~fvk~Le-~-aGft~~QAeai~~al~~~l~~~l 85 (226)
+.-.+++.+. . .|++..+|+.+++++-+.+.+.|
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L 37 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTL 37 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456788886 4 49999999999999998887655
No 117
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.21 E-value=1.5e+02 Score=22.33 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 027204 74 TAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIE 139 (226)
Q Consensus 74 ~~al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie 139 (226)
|+-+.++-.+-..+..+=.+.+..|..++-++..|=.++-+.--..|+.+.+.++..+..|++.+.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433322222233333444555555555554455444444455555555555444444443
No 118
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=34.19 E-value=54 Score=23.49 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=28.3
Q ss_pred ccHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhH
Q 027204 51 VDTLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSL 85 (226)
Q Consensus 51 FDT~~fvk~Le-~aGft~~QAeai~~al~~~l~~~l 85 (226)
.+.-.|++.+. ..|++..+|+.+++++-+.+.+.|
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667777774 568999999999999999887655
No 119
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.98 E-value=93 Score=19.94 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=24.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027204 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVT 153 (226)
Q Consensus 122 ~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ 153 (226)
+-+..|.+...+|-.|.+.-.++|+..|.++.
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777788888888888888888888874
No 120
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=33.69 E-value=76 Score=26.57 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 027204 109 LSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 109 iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
++.||.+..+. -++++.|.+..++++.|.+.|+..+
T Consensus 32 ~~~~~a~~~s~-~s~~~dl~~s~~~l~ae~~~L~~~l 67 (206)
T 3oa7_A 32 LQQLRVNYGSF-VSEYNDLTKSHNTLSKELDNLRSRF 67 (206)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455554322 2556777777777888888777664
No 121
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=33.45 E-value=79 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 027204 53 TLQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (226)
Q Consensus 53 T~~fvk~L-e~aGft~~QAeai~~al~~~l~~~l~ 86 (226)
.-.+++.+ +..|++..+|+.+++++-+.+.+.|.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 2o97_B 3 KSQLIDKIAAGADISKAAAGRALDAIIASVTESLK 37 (90)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566676 46789999999999999998877653
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.95 E-value=89 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~~L 145 (226)
+..+++.|+.+++.|..++
T Consensus 48 l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.95 E-value=1.4e+02 Score=21.52 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027204 134 LRSDIEKMRSE 144 (226)
Q Consensus 134 Lk~Eie~L~~~ 144 (226)
++.+++.++..
T Consensus 29 l~~~i~~l~~~ 39 (112)
T 1l8d_A 29 LKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 124
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=32.71 E-value=1.4e+02 Score=28.40 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred cHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHH
Q 027204 52 DTLQLVRGLEA-QGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRE 130 (226)
Q Consensus 52 DT~~fvk~Le~-aGft~~QAeai~~al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e 130 (226)
|.-.....|.+ -+|++.||++|.+. -|..+.+.+...++.|
T Consensus 421 ~~~~a~~~L~~~f~lse~qa~~IL~m--------------------------------------~L~rLT~~e~~kl~~E 462 (514)
T 2inr_A 421 NKRDAKENLIEVYEFTEEQAEAIVML--------------------------------------QLYRLTNTDIVALEGE 462 (514)
T ss_dssp SHHHHHHHHHTTSSCCHHHHHHHHTC--------------------------------------CGGGGSTTHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHhc--------------------------------------hHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhhhhhHHHHHhhHHHH
Q 027204 131 TEKLRSDIEKMRSELRYE--IDKVTAGQRLDLNLERGRIRDELANQNAET 178 (226)
Q Consensus 131 ~e~Lk~Eie~L~~~Lkee--I~kl~ae~klDlNleK~r~ree~~~~~~kI 178 (226)
.+.++.+++.|+.-|..+ +.++ +++|+.++..+.
T Consensus 463 ~~~l~~ei~~l~~iL~~~~~~~~~--------------i~~el~~i~~~y 498 (514)
T 2inr_A 463 HKELEALIKQLRHILDNHDALLNV--------------IKEELNEIKKKF 498 (514)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH--------------HHHHHHHHHHHc
No 125
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.29 E-value=1.1e+02 Score=20.36 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDIEKMRS 143 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~ 143 (226)
|+.+.+.|+.|+..|++
T Consensus 42 L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 126
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.01 E-value=41 Score=19.00 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 027204 126 MLQRETEKLRSDIEKMRSE 144 (226)
Q Consensus 126 ~lr~e~e~Lk~Eie~L~~~ 144 (226)
.|.-|++.|...|..|+|+
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 3444555566666655554
No 127
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.87 E-value=3.2e+02 Score=25.47 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred CcCccccc
Q 027204 31 TIGYRQIS 38 (226)
Q Consensus 31 ~~~~~~~s 38 (226)
-++||.++
T Consensus 42 ~~~~~~~~ 49 (464)
T 1m1j_B 42 GTGYQPRP 49 (464)
T ss_dssp --------
T ss_pred CCCcCCCC
Confidence 44555555
No 128
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=31.37 E-value=85 Score=18.66 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 027204 179 TNLTNKLDREIHALRAHMEAAK 200 (226)
Q Consensus 179 ~e~~~Ki~~eIa~LRteIEs~K 200 (226)
.|-..-|+.||..++.+|...|
T Consensus 8 keeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666544
No 129
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=31.20 E-value=55 Score=19.26 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 027204 185 LDREIHALRAHMEAAKYDV 203 (226)
Q Consensus 185 i~~eIa~LRteIEs~K~d~ 203 (226)
|..|++.++.|+...|+++
T Consensus 7 ikqelaaikkelaaikfel 25 (34)
T 3r4h_A 7 IKQELAAIKKELAAIKFEL 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777664
No 130
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.03 E-value=1.2e+02 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027204 179 TNLTNKLDREIHALRAHMEAAKYDVIK 205 (226)
Q Consensus 179 ~e~~~Ki~~eIa~LRteIEs~K~d~lr 205 (226)
..-|..+..+|..|+.|+..+|.-++.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655554443
No 131
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=31.00 E-value=90 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.0
Q ss_pred eccHHHHHHHHh------hCCCChHHHHHHHHHHHHHHHhhH
Q 027204 50 LVDTLQLVRGLE------AQGVPSKQAEAITAAITEVLNDSL 85 (226)
Q Consensus 50 ~FDT~~fvk~Le------~aGft~~QAeai~~al~~~l~~~l 85 (226)
..+.-.+++.+. ..|++..+|+.+++++-+.+.+.|
T Consensus 8 ~mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L 49 (108)
T 2np2_A 8 KVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNL 49 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 367778888885 678999999999999999887755
No 132
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.68 E-value=1e+02 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQR 157 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~k 157 (226)
-+..|++.+.+|-.|.+...++|++.|.++-.-++
T Consensus 15 sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 15 SVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777888888888888888888765444
No 133
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=30.57 E-value=11 Score=28.68 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=16.8
Q ss_pred cceeccHHHHHHHHhhCCCChHHHHHHHH
Q 027204 47 RAFLVDTLQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 47 ~~~~FDT~~fvk~Le~aGft~~QAeai~~ 75 (226)
..+...+-.|-+.| .|+|++|..-|=.
T Consensus 12 ~Lv~m~v~elN~~L--~~Ls~~e~~~lK~ 38 (107)
T 3a5t_A 12 ELVTMSVRELNQHL--RGLSKEEIIQLKQ 38 (107)
T ss_dssp HHHHSCHHHHHHTT--TTCCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHH--hCCCHHHHHHHHH
Confidence 34445555677777 4899888654433
No 134
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.31 E-value=61 Score=21.82 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=15.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q 027204 123 HFSMLQRETEKLRSDIEKMRSELR 146 (226)
Q Consensus 123 e~~~lr~e~e~Lk~Eie~L~~~Lk 146 (226)
+...|..++..|..+++.|++.+.
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777776553
No 135
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.30 E-value=1.1e+02 Score=21.77 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=35.0
Q ss_pred cCCCCCcCcccccccccCCCCcceeccHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 027204 26 LNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFV 93 (226)
Q Consensus 26 ~~~~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~aGft~~QAeai~~al~~~l~~~l~~~~~~lv 93 (226)
+|..++.-|..+++....... ..+| -..+++|.+-||++++|+....+. +.+++.+..-+.
T Consensus 5 ~~p~~~~l~~~~~~~l~~~~~--~~~~-e~~i~~L~~MGF~~~~a~~AL~~t----~~nve~A~ewL~ 65 (83)
T 2dai_A 5 SSGDAVELFKKANAMLDEDED--ERVD-EAALRQLTEMGFPENRATKALQLN----HMSVPQAMEWLI 65 (83)
T ss_dssp CSCCCCCCCCCCSCCCCCCCS--SSCC-HHHHHHHHHHTCCHHHHHHHHHHT----TSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhccccc--CCCC-HHHHHHHHHcCCCHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 455556666666654443322 2233 345789999999999986554432 344444444443
No 136
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=30.27 E-value=2.4e+02 Score=23.47 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhhh
Q 027204 140 KMRSELRYEIDKVTA 154 (226)
Q Consensus 140 ~L~~~LkeeI~kl~a 154 (226)
.|+.+++..+..++.
T Consensus 125 el~~~~~~~~eel~~ 139 (243)
T 2a01_A 125 ELQEGARQKLHELQE 139 (243)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHH
Confidence 334444444444444
No 137
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=29.95 E-value=1.6e+02 Score=21.40 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027204 128 QRETEKLRSDIEKMRSELRYEIDKV 152 (226)
Q Consensus 128 r~e~e~Lk~Eie~L~~~LkeeI~kl 152 (226)
+.+.+.+-.++-.+-..++..|..+
T Consensus 49 ~~~l~~l~~~i~~~a~~ik~~Lk~l 73 (127)
T 1ez3_A 49 KEELEELMSDIKKTANKVRSKLKSI 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 138
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=29.91 E-value=74 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=25.7
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhHH
Q 027204 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSLE 86 (226)
Q Consensus 54 ~~fvk~L-e~aGft~~QAeai~~al~~~l~~~l~ 86 (226)
-.+++.+ +..|++..+|+.+++++-+.+.+.|.
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 1b8z_A 4 KELIDRVAKKAGAKKKDVKLILDTILETITEALA 37 (90)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 46689999999999999988876553
No 139
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=29.74 E-value=38 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=29.3
Q ss_pred cccccC-CCCCcCcccccccccCCCCcceeccHHHHHHHHhhC-CCChHHHHHHHHHH
Q 027204 22 QGFNLN-YSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQ-GVPSKQAEAITAAI 77 (226)
Q Consensus 22 ~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~FDT~~fvk~Le~a-Gft~~QAeai~~al 77 (226)
.|.--| .+..+|||.++ .-....+++++.|.+. |||-++...++...
T Consensus 23 ~GLl~p~~R~~~gyR~Y~---------~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~~ 71 (222)
T 2dg6_A 23 EGLLPPGRQVNATTAEYD---------EDHLRRLRLVRALIQVGKVPVATAREVLGHV 71 (222)
T ss_dssp HTSSCCC---------CC---------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCeeCCCCceeeC---------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 344333 34567888887 3468899999999998 99999988877654
No 140
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.72 E-value=3e+02 Score=25.70 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDI 138 (226)
Q Consensus 127 lr~e~e~Lk~Ei 138 (226)
|+++...+..+|
T Consensus 52 l~~~rn~~sk~i 63 (485)
T 3qne_A 52 HNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 141
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.50 E-value=1.1e+02 Score=21.67 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=15.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHH
Q 027204 122 HHFSMLQRETEKLRSDIEKMRSE 144 (226)
Q Consensus 122 ~e~~~lr~e~e~Lk~Eie~L~~~ 144 (226)
.....|..++..|+.+|+.|+.+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788777766544
No 142
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.42 E-value=58 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=17.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHH
Q 027204 122 HHFSMLQRETEKLRSDIEKMRSEL 145 (226)
Q Consensus 122 ~e~~~lr~e~e~Lk~Eie~L~~~L 145 (226)
.+...+|.+++.|..|-+.|+.+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888877776654
No 143
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.40 E-value=1.6e+02 Score=21.35 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=38.3
Q ss_pred cHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHH
Q 027204 52 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRET 131 (226)
Q Consensus 52 DT~~fvk~Le~aGft~~QAeai~~al~~~l~~~l~~~~~~lvTK~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~ 131 (226)
.+-.|-+.| .|+|.+|-.-|=. .+.-+.... ...+.-+|-- ..+.+|-.+...+ ..+...|+.|+
T Consensus 7 sVreLN~~L--~gls~eev~~lKq-~RRtlKNRg--yAq~CR~Kr~---------~q~~~LE~e~~~L-~~e~~~L~~e~ 71 (90)
T 2wt7_B 7 SVRELNRHL--RGFTKDEVIRLKQ-KRRTLKNRG--YAQSCRYKRV---------QQKHHLENEKTQL-IQQVEQLKQEV 71 (90)
T ss_dssp CHHHHHTTC--TTCCHHHHHHHHH-HHHHHHHHH--HHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHH--cCCCHHHHHHHHH-HHHhhhhhH--HHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344566667 4999999655433 343333221 1222222221 1112222222111 24455666667
Q ss_pred HHHHHHHHHHHHHH
Q 027204 132 EKLRSDIEKMRSEL 145 (226)
Q Consensus 132 e~Lk~Eie~L~~~L 145 (226)
..+..|++.+++++
T Consensus 72 ~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 72 SRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.37 E-value=2.7e+02 Score=26.06 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=2.1
Q ss_pred cCccccccc
Q 027204 32 IGYRQISQL 40 (226)
Q Consensus 32 ~~~~~~s~~ 40 (226)
|-+|+.|.+
T Consensus 19 ~~~~~~~~~ 27 (501)
T 1wle_A 19 TERQDRNLL 27 (501)
T ss_dssp -----CCHH
T ss_pred cccchhhhh
Confidence 334555554
No 145
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=27.93 E-value=80 Score=22.30 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=25.2
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhH
Q 027204 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSL 85 (226)
Q Consensus 54 ~~fvk~L-e~aGft~~QAeai~~al~~~l~~~l 85 (226)
-.+++.+ +..|++..+|+.+++++-+.+.+.|
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 4 GELVDAVAEKASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466666 3568999999999999998887655
No 146
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=27.82 E-value=2.9e+02 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=10.0
Q ss_pred HHHhhCCCChHHH
Q 027204 58 RGLEAQGVPSKQA 70 (226)
Q Consensus 58 k~Le~aGft~~QA 70 (226)
..|.+.|+++++|
T Consensus 211 e~l~~~Gl~~~~a 223 (338)
T 1np3_A 211 ETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHTTCCHHHH
T ss_pred HHHHHcCCCHHHH
Confidence 4457889999887
No 147
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.71 E-value=64 Score=24.82 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 027204 106 EANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (226)
Q Consensus 106 ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie~L~~~Lke 147 (226)
.+.+.+||.++. .+..|....+.|+.+++.+++.++.
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 5 NAQIPELKSDLE-----KASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp --------CHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555655553 4556666667777777777666544
No 148
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.29 E-value=96 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 027204 182 TNKLDREIHALRAHMEAAKYDV 203 (226)
Q Consensus 182 ~~Ki~~eIa~LRteIEs~K~d~ 203 (226)
|.++..++..+|.+|+.+|-++
T Consensus 70 Ne~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 70 NSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555554443
No 149
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=27.25 E-value=73 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHHHHHHh-hCCCChHHHHHHHHHHHHHHHhhHH
Q 027204 53 TLQLVRGLE-AQGVPSKQAEAITAAITEVLNDSLE 86 (226)
Q Consensus 53 T~~fvk~Le-~aGft~~QAeai~~al~~~l~~~l~ 86 (226)
.-.+++.+. ..|++..+|+.+++++-+.+.+.|.
T Consensus 6 k~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~ 40 (93)
T 3rhi_A 6 KTELIKNVAQNAEISQKEATVVVQTVVESITNTLA 40 (93)
T ss_dssp -CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 345666664 5689999999999999988876553
No 150
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=27.19 E-value=2e+02 Score=22.81 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhhh--hhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027204 145 LRYEIDKVTAGQR--LDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEAAK 200 (226)
Q Consensus 145 LkeeI~kl~ae~k--lDlNleK~r~ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs~K 200 (226)
|-+++.+-=..++ -|.+..-..+..+.+....++.+...+...+|.+|..+|+.++
T Consensus 65 lVD~fek~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~ 122 (160)
T 2cly_B 65 LVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMR 122 (160)
T ss_dssp HHHHHHHHHTTCCCCCCCCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333332 2333333455566666677788888889999999999888765
No 151
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=27.05 E-value=83 Score=22.51 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHH-hhCCCChHHHHHHHHHHHHHHHhhH
Q 027204 54 LQLVRGL-EAQGVPSKQAEAITAAITEVLNDSL 85 (226)
Q Consensus 54 ~~fvk~L-e~aGft~~QAeai~~al~~~l~~~l 85 (226)
-.+++.+ +..|++..+|+.+++++-+.+.+.|
T Consensus 4 ~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 4 AELIDVLTQKLGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4568999999999999998887655
No 152
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.20 E-value=61 Score=21.76 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHH
Q 027204 54 LQLVRGLEAQGVPSKQAEAITA 75 (226)
Q Consensus 54 ~~fvk~Le~aGft~~QAeai~~ 75 (226)
...+++|.+-||++++|.....
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~ 31 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALM 31 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3568999999999999855433
No 153
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.08 E-value=29 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=17.3
Q ss_pred HHHHHHhhCCCChHHHHHHHHH
Q 027204 55 QLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 55 ~fvk~Le~aGft~~QAeai~~a 76 (226)
..+++|.+-||++++|+....+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLN 32 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4578999999999998665544
No 154
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.93 E-value=1.6e+02 Score=20.21 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027204 131 TEKLRSDIEKMRSELRY 147 (226)
Q Consensus 131 ~e~Lk~Eie~L~~~Lke 147 (226)
+-.++++|+.+..-+++
T Consensus 44 ir~vRr~IARi~Tvl~e 60 (72)
T 3j21_W 44 IRNLRRDIARLLTIKKE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666666554
No 155
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=25.78 E-value=2.1e+02 Score=23.33 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHHHHhhC-C-CChHHHHHHHHHHHHHHHhhHHHHHhhhhhhhHHHH
Q 027204 56 LVRGLEAQ-G-VPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQK 100 (226)
Q Consensus 56 fvk~Le~a-G-ft~~QAeai~~al~~~l~~~l~~~~~~lvTK~dle~ 100 (226)
+++++-+. + ++..+++.+++.+-+.+.+.|.......+||.||-+
T Consensus 8 li~~~~~~~~~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~ 54 (204)
T 2iie_A 8 LIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSE 54 (204)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHH
Confidence 45566433 3 999999999999999999888777777788888754
No 156
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=25.70 E-value=3.3e+02 Score=23.66 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=12.1
Q ss_pred HHHHHHhhC-C-CChHHHHHHHHHHHHH
Q 027204 55 QLVRGLEAQ-G-VPSKQAEAITAAITEV 80 (226)
Q Consensus 55 ~fvk~Le~a-G-ft~~QAeai~~al~~~ 80 (226)
.+.++|+.. | +....+..++-++-+.
T Consensus 161 ~v~~rl~~~~~~~~~~~~~~ll~~lld~ 188 (363)
T 2iub_A 161 PVRERIRYNRGIIRKKRADYLLYSLIDA 188 (363)
T ss_dssp HHHHHHHTTCTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccCCHHHHHHHHHHH
Confidence 455677765 4 3333344444443333
No 157
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.59 E-value=95 Score=17.36 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027204 103 MIQEANLSKFKSE 115 (226)
Q Consensus 103 y~~ka~iseLR~E 115 (226)
||.+....+|+.|
T Consensus 3 yqlkdevgelkge 15 (27)
T 3v86_A 3 YQLKDEVGELKGE 15 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhH
Confidence 3334444444433
No 158
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.08 E-value=1.4e+02 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 124 FSMLQRETEKLRSDIEKMRSELRYEIDK 151 (226)
Q Consensus 124 ~~~lr~e~e~Lk~Eie~L~~~LkeeI~k 151 (226)
++....|.++|..+|+.|+..-..++++
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q~~~lsk 65 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVHSQKLSK 65 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556666666777777766654444433
No 159
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.00 E-value=52 Score=24.31 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhh-hhhhHHHhHHHHHHHHHHHHHHHH
Q 027204 104 IQEANLSKFKSEVQSS-QEHHFSMLQRETEKLRSDIEKMRS 143 (226)
Q Consensus 104 ~~ka~iseLR~El~~~-~k~e~~~lr~e~e~Lk~Eie~L~~ 143 (226)
+.+..+-+|+.|+... .-.||+. -.+|++.+|+|..
T Consensus 34 ~lk~E~~~lk~E~~stSaQDEFAK----WAKL~Rk~DKl~~ 70 (94)
T 3vlc_E 34 AKVKERHELKEFNNSISAQDNYAK----WTKNNRKLDSLDK 70 (94)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHH
Confidence 4577788888888653 4566753 4556666666533
No 160
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.70 E-value=1.5e+02 Score=19.36 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 027204 180 NLTNKLDREIHALRAHMEAAKYDV 203 (226)
Q Consensus 180 e~~~Ki~~eIa~LRteIEs~K~d~ 203 (226)
.-|..+..+|+.|+.++..+|..+
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666665443
No 161
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=24.33 E-value=1.4e+02 Score=29.47 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=21.3
Q ss_pred HhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 027204 117 QSSQEHHFSMLQRETEKLRSDIEKMRSELRY 147 (226)
Q Consensus 117 ~~~~k~e~~~lr~e~e~Lk~Eie~L~~~Lke 147 (226)
..+.+-|...++.|.+.|..+++.|+.-|..
T Consensus 632 ~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~ 662 (692)
T 2xcs_B 632 RRLTGLERDKIEAEYNELLNYISELETILAD 662 (692)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455667777777777777777777665544
No 162
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.18 E-value=3.8e+02 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=8.6
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 027204 171 LANQNAETTNLTNKLDRE 188 (226)
Q Consensus 171 ~~~~~~kI~e~~~Ki~~e 188 (226)
+.+++.+|.++|++|...
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554433
No 163
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.09 E-value=2.7e+02 Score=22.02 Aligned_cols=6 Identities=0% Similarity=0.457 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027204 136 SDIEKM 141 (226)
Q Consensus 136 ~Eie~L 141 (226)
.|+..|
T Consensus 43 ~elqQL 48 (150)
T 4dci_A 43 QQLAQL 48 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 164
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=24.03 E-value=1.6e+02 Score=19.52 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=15.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 027204 122 HHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQR 157 (226)
Q Consensus 122 ~e~~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~k 157 (226)
.|+..+-.....+...+..+....++-+..+.++++
T Consensus 37 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~ 72 (114)
T 3zcc_A 37 DEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLR 72 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHc
Confidence 344444444444444444444444433444444333
No 165
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.69 E-value=1.4e+02 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 027204 127 LQRETEKLRSDIEKMRSELRYEIDKVTAGQR 157 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~~LkeeI~kl~ae~k 157 (226)
++...-++++|+++.|.+...|...++.-..
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~ 88 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRRTELDIEKAHKFAL 88 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777776665333
No 166
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.86 E-value=3e+02 Score=22.19 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhhhhHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 125 SMLQRETEKLRSDIEKMRSELRYEIDKVTA--GQRLDLNLERGRIRDELANQ---NAETTNLTNKLDREIHALRAHMEAA 199 (226)
Q Consensus 125 ~~lr~e~e~Lk~Eie~L~~~LkeeI~kl~a--e~klDlNleK~r~ree~~~~---~~kI~e~~~Ki~~eIa~LRteIEs~ 199 (226)
..|......|..|+..|...|..|-..-.. +..-|++.+.....+++... ..++..-+.++...|+.|..+-.++
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555666666666555555332221 23334444444444444433 3344555566666666776666665
Q ss_pred HHHH
Q 027204 200 KYDV 203 (226)
Q Consensus 200 K~d~ 203 (226)
-.|+
T Consensus 138 eid~ 141 (168)
T 3o0z_A 138 EIDL 141 (168)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
No 167
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.56 E-value=2.1e+02 Score=20.30 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 027204 95 KGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIE 139 (226)
Q Consensus 95 K~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie 139 (226)
+..|..++-++..|=.++-+.--..++.+.+.++..+..|++-+.
T Consensus 25 ~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 25 RQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333444555554444444444333
No 168
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.53 E-value=1.4e+02 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027204 127 LQRETEKLRSDIEKMRSELR 146 (226)
Q Consensus 127 lr~e~e~Lk~Eie~L~~~Lk 146 (226)
++.+.+.++.+++.++.+++
T Consensus 15 l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 169
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.39 E-value=3.1e+02 Score=22.15 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027204 168 RDELANQNAETTNLTNKLDREIHALRAHMEAAK 200 (226)
Q Consensus 168 ree~~~~~~kI~e~~~Ki~~eIa~LRteIEs~K 200 (226)
+++...-..++++....++.+...|.+.|+.++
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~ 83 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLT 83 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555555555555555443
No 170
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.30 E-value=59 Score=21.61 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHH
Q 027204 55 QLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 55 ~fvk~Le~aGft~~QAeai~~a 76 (226)
..+++|.+-||++++|+.....
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRA 32 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4578999999999998665544
No 171
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.15 E-value=48 Score=28.29 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHH
Q 027204 188 EIHALRAHMEAAKYD 202 (226)
Q Consensus 188 eIa~LRteIEs~K~d 202 (226)
-.+.|.+.|...||+
T Consensus 191 ~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 191 YVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHhhceee
Confidence 345677777777775
No 172
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.10 E-value=2e+02 Score=19.84 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=21.5
Q ss_pred ccHHHHHHHHhhCCCChHHHHHHHHH
Q 027204 51 VDTLQLVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 51 FDT~~fvk~Le~aGft~~QAeai~~a 76 (226)
+..+.|++.|+..|||-++-..++..
T Consensus 3 l~rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 3 LQRLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 56789999999999999887666654
No 173
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.94 E-value=76 Score=21.23 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.8
Q ss_pred HHHHHhhCCCChHHHHHHHHH
Q 027204 56 LVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 56 fvk~Le~aGft~~QAeai~~a 76 (226)
.+++|.+-||++++|+....+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~ 32 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALAL 32 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999998765553
No 174
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=21.90 E-value=4.3e+02 Score=23.97 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=7.1
Q ss_pred HHHHHHhhCCCCh
Q 027204 55 QLVRGLEAQGVPS 67 (226)
Q Consensus 55 ~fvk~Le~aGft~ 67 (226)
++.+.|-+.|..+
T Consensus 102 ~~l~~~~~~g~r~ 114 (462)
T 3geh_A 102 QVLQLCLESGARL 114 (462)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCee
Confidence 4555555556543
No 175
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=21.86 E-value=98 Score=19.32 Aligned_cols=15 Identities=7% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027204 205 KYCIGTLVSISAVGL 219 (226)
Q Consensus 205 rwliG~v~~~~al~l 219 (226)
-|++|++.+..++.+
T Consensus 10 LWlvgtv~G~~vi~~ 24 (40)
T 3arc_J 10 LWIVATVAGMGVIVI 24 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEeeeeehhhhhhhe
Confidence 499999988776544
No 176
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.82 E-value=3.2e+02 Score=24.58 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 027204 128 QRETEKLRSDI 138 (226)
Q Consensus 128 r~e~e~Lk~Ei 138 (226)
+.+.+.|+.+.
T Consensus 9 ~~~~~~l~~~~ 19 (403)
T 4etp_A 9 KEKIAALKEKI 19 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.68 E-value=1e+03 Score=27.84 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=8.3
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 027204 170 ELANQNAETTNLTNKLDR 187 (226)
Q Consensus 170 e~~~~~~kI~e~~~Ki~~ 187 (226)
+...++.++..+..|++.
T Consensus 2057 ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2057 ETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555443
No 178
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=21.53 E-value=75 Score=18.74 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027204 201 YDVIKYCIGTLVSISAVGLAIVRIL 225 (226)
Q Consensus 201 ~d~lrwliG~v~~~~al~la~~rl~ 225 (226)
|+++|- .|++++.+.+++|++-++
T Consensus 7 y~tLri-gGLi~a~vLfi~gi~iil 30 (31)
T 3n2f_G 7 YETVRN-GGLIFAALAFIVGLIIIL 30 (31)
T ss_dssp HHHHHH-HHTTTHHHHHHHHHHHHT
T ss_pred hHHHhh-cchhHHHHHHHHHHHHhc
Confidence 455554 688888888888887654
No 179
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.53 E-value=53 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHhhCCCChHHHHHHHHH
Q 027204 56 LVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 56 fvk~Le~aGft~~QAeai~~a 76 (226)
.+++|.+-||++++|+....+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~ 42 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALAS 42 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999998765544
No 180
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.30 E-value=2.5e+02 Score=20.68 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 027204 95 KGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIE 139 (226)
Q Consensus 95 K~dle~~~y~~ka~iseLR~El~~~~k~e~~~lr~e~e~Lk~Eie 139 (226)
+..|..++-++..|=.++-+.--..++.+.+.++..+..|++-+.
T Consensus 25 ~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 25 RQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443344333333344444444444444443333
No 181
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.09 E-value=2.5e+02 Score=20.52 Aligned_cols=29 Identities=3% Similarity=0.186 Sum_probs=17.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027204 169 DELANQNAETTNLTNKLDREIHALRAHME 197 (226)
Q Consensus 169 ee~~~~~~kI~e~~~Ki~~eIa~LRteIE 197 (226)
+.....+..+......+..-..+|+.-..
T Consensus 49 e~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 49 EMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666655444
No 182
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.92 E-value=2.7e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Q 027204 184 KLDREIHALRAHMEAAK--YDVIKYCIGTLVSI 214 (226)
Q Consensus 184 Ki~~eIa~LRteIEs~K--~d~lrwliG~v~~~ 214 (226)
.++.||+.|+.+.+.+| .+..+|++.++--+
T Consensus 126 ~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 126 QKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777666 45677777776443
No 183
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.86 E-value=81 Score=21.19 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHhhCCCChHHHHHHHHH
Q 027204 56 LVRGLEAQGVPSKQAEAITAA 76 (226)
Q Consensus 56 fvk~Le~aGft~~QAeai~~a 76 (226)
.+++|.+-||++++|+.-..+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~ 32 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAA 32 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 468999999999888655444
No 184
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=20.66 E-value=2.6e+02 Score=20.54 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027204 167 IRDELANQNAETTNLTNKLDREIHAL 192 (226)
Q Consensus 167 ~ree~~~~~~kI~e~~~Ki~~eIa~L 192 (226)
++.+-...+.+|.++..||+..+-++
T Consensus 37 l~~e~~~R~~~i~el~akidd~Lk~l 62 (101)
T 1d7m_A 37 LESEGAEREKRLRELEAKLDETLKNL 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666777888888888888777655
No 185
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.48 E-value=5.4e+02 Score=24.18 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=19.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 027204 169 DELANQNAETTNLTNKLDREIH---ALRAHMEAAKYDVIK 205 (226)
Q Consensus 169 ee~~~~~~kI~e~~~Ki~~eIa---~LRteIEs~K~d~lr 205 (226)
+-..+++.+|..+..+|+..|. .||.-|+....++-|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQR 150 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKR 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566555555555553 455555555555443
No 186
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.47 E-value=2.5e+02 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 027204 131 TEKLRSDIEKMRSELRYEIDKVTA 154 (226)
Q Consensus 131 ~e~Lk~Eie~L~~~LkeeI~kl~a 154 (226)
+.+++.+++.++.-|.+-|.++..
T Consensus 32 l~~vq~eldeVk~IM~~NI~kvLe 55 (96)
T 1sfc_A 32 LQQTQAQVDEVVDIMRVNVDKVLE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888844
No 187
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.32 E-value=2.7e+02 Score=20.69 Aligned_cols=16 Identities=19% Similarity=0.163 Sum_probs=6.0
Q ss_pred hhhhHHHHHhhHHHHH
Q 027204 164 RGRIRDELANQNAETT 179 (226)
Q Consensus 164 K~r~ree~~~~~~kI~ 179 (226)
|+.+...+...+.+-+
T Consensus 55 K~dv~~~L~k~~~e~q 70 (101)
T 4aj5_1 55 KDDINILLDKARLENQ 70 (101)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 188
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.21 E-value=1.4e+02 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=11.9
Q ss_pred HHHHHhhCCCChHHH
Q 027204 56 LVRGLEAQGVPSKQA 70 (226)
Q Consensus 56 fvk~Le~aGft~~QA 70 (226)
-+.+|.+-||+..++
T Consensus 10 ~i~~L~~MGF~d~~~ 24 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDR 24 (46)
T ss_dssp HHHHHHHTTCCCHHH
T ss_pred HHHHHHHcCCCcHHH
Confidence 468899999987764
No 189
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=20.08 E-value=74 Score=17.93 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=14.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHH
Q 027204 203 VIKY-CIGTLVSISAVGLAIVR 223 (226)
Q Consensus 203 ~lrw-liG~v~~~~al~la~~r 223 (226)
..|| .+|+.+++.+++..++.
T Consensus 3 ~~Ry~viG~yvg~aTvg~f~~w 24 (26)
T 2voy_D 3 FFRYMAIGGYVGAATVGAAAWX 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhhheeEEe
Confidence 4567 56888888887766543
Done!