BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027206
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 246 bits (629), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 114/172 (66%), Positives = 139/172 (80%)
Query: 45 QISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI 104
+++AKFELKPPPYP N LEP MS+ TLE+HWGKHHR YVENL KQ+VGTELDG SLE++I
Sbjct: 14 KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEII 73
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ +YNKG++LP FNNAAQ WNH+FFW IERDFGSF++FL+EFK
Sbjct: 74 VTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFK 133
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW 216
+AAATQFGSGWAWLAYKA++L+ +NA NP +++D KLVV+KSPNAVNPLVW
Sbjct: 134 AAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVW 185
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 91/167 (54%), Gaps = 18/167 (10%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
F +P P+ P ALEP+ MS TLE+H+GKHH+ YV+NLNK TEL SLEDVI +Y
Sbjct: 2 FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTY 61
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+ FNNAAQ WNH FFW I FGS+D F +FK+AAA
Sbjct: 62 GDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAA 121
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
TQFGSGWAWL +A L V K+ NA NPLV
Sbjct: 122 TQFGSGWAWLVLEAGTLK-----------------VTKTANAENPLV 151
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL P PY +AL+PH+SK+TLE+H KHH YV NLN + GTE +G +LE+++ S
Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I FGSFD+F EEF +
Sbjct: 60 SGGI---FNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVG 116
Query: 170 QFGSGWAWLAYKAN 183
FGSGW WL KA+
Sbjct: 117 TFGSGWGWLVKKAD 130
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 87/168 (51%), Gaps = 21/168 (12%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
+G + FNNAAQ WNH F+W I FGSF F +F AA
Sbjct: 60 EGGV---FNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIK 116
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD 217
FGSGW WL V N+ D KL +V + NA PL D
Sbjct: 117 NFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTD 148
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 87/168 (51%), Gaps = 21/168 (12%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
+G + FNNAA+ WNH F+W I FGSF F +F AA
Sbjct: 60 EGGV---FNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIK 116
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD 217
FGSGW WL V N+ D KL +V + NA PL D
Sbjct: 117 NFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTD 148
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
+G + FNNAA WNH F+W I FGSF F +F AA
Sbjct: 60 EGGV---FNNAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIK 116
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD 217
FGSGW WL V N+ D KL +V + NA PL D
Sbjct: 117 NFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTD 148
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
FEL P PY +AL+PH+SK+TLEYH KHH YV NLN + GT E +G +LE+ IV
Sbjct: 2 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEE--IVKS 59
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+ G + FNNAAQ WNH F+W I FGSFD+F EEF +
Sbjct: 60 SSGGI---FNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAV 191
FGSGWAWL L + + +
Sbjct: 117 GTFGSGWAWLVKADGSLALCSTI 139
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY NALEPH+S++TLEYH GKHHRAYV LNK I GT + LE++I S
Sbjct: 3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPFEKEPLEEIIRKS-- 60
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I++ FGS ++F F +A
Sbjct: 61 DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANN 117
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
FGSGWAWL + + KL V+ + NA NP+
Sbjct: 118 HFGSGWAWLV----------------KDNNGKLEVLSTVNARNPMT 147
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 88/169 (52%), Gaps = 22/169 (13%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 106
+ KFEL PY +ALE +SK+T+EYH+GKHH+ YV NLN + GTE DG +LE+++
Sbjct: 3 AMKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKT 62
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
S N G FNNAAQ +NH F+W IE FGS + F E+F A
Sbjct: 63 S-NGG----IFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKA 116
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
A FGSGWAWL + KL +V + NA PL
Sbjct: 117 AIATFGSGWAWLV----------------KNTEGKLEIVTTSNAGCPLT 149
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 83/161 (51%), Gaps = 9/161 (5%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
FEL P+ +ALEPH+S +TL+YH GKHH YV LN I GTE +G +LE++I S
Sbjct: 2 SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS- 60
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
G + FNNAAQ WNH F+W I+ FGSF+ F +F +A
Sbjct: 61 -TGGV---FNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAI 116
Query: 169 TQFGSGWAWLAYKANR----LNVDNAVNPFPSEKDKKLVVV 205
FGS W WL A+ +N NA P E L+ V
Sbjct: 117 NNFGSSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTV 157
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 42 VYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIV-GTELDGMSL 100
+ ++ F+ P PY NALEPHMS +TL YH KHH+ YV+ LN + + +L
Sbjct: 25 CFSSVTGPFQCPPLPYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTL 84
Query: 101 EDVIIVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
E +I K PFN AAQ +NH FF+ I RDFGSF++F
Sbjct: 85 EQIIKTETGK-----PFNQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFK 139
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNV---DNAVNPFPSEK 198
E+F +AA FGSGW WL +L + +A NP K
Sbjct: 140 EDFSAAAVGHFGSGWVWLIADDGKLKIVQGHDAGNPIRESK 180
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 86/164 (52%), Gaps = 21/164 (12%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNK 110
EL PY +AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSE 61
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
G + FNNA Q NH ++ I++ FGSF++F EEF +A T
Sbjct: 62 GGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
FGSGW WLA AN KL + K PNA NP+
Sbjct: 119 FGSGWVWLASDAN----------------GKLSIEKEPNAGNPV 146
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 86/164 (52%), Gaps = 21/164 (12%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNK 110
EL PY +AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSE 61
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
G + FNNA Q NH ++ I++ FGSF++F EEF +A T
Sbjct: 62 GGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
FGSGW WLA AN KL + K PNA NP+
Sbjct: 119 FGSGWVWLASDAN----------------GKLSIEKEPNAGNPV 146
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM---SLEDVI 104
+ FEL PY LEP++S L+ H+ HH+ YV+ LNK +VGTE +G+ SL D++
Sbjct: 21 SMFELSDLPYE--GLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIV 78
Query: 105 IVSYNKGNM-LPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEF 163
+ ++N G+ FNNAAQ WNH+F+W IE FGS + F F
Sbjct: 79 VKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAF 138
Query: 164 KSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
++ QFGSGW WL Y E K L VV + NA +PL+
Sbjct: 139 TTSGLGQFGSGWVWLVY---------------DEDAKALKVVSTANADSPLL 175
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY +ALEPH+SK+TLE+H GKHH YV LN I GT+ + SLE+++ S
Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVCSS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I +GSFD F E A
Sbjct: 60 DGGV---FNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVN 116
Query: 170 QFGSGWAWLAYKANR----LNVDNAVNPFPSEKDKKLVVV 205
FGS W WL A+ +N NA P + ++ V
Sbjct: 117 NFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTV 156
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 21/158 (13%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T L SL D++ K +
Sbjct: 18 YALNALSPHISEETLSFHYNKHHAGYVNKLNGLIKDTPLANKSLTDIL-----KESTGAI 72
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F ++F + FGSGW
Sbjct: 73 FNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWG 132
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
WLA K+ KLV++++ +A NP+
Sbjct: 133 WLAL----------------NKNNKLVILQTHDAGNPI 154
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL D++ K +
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAI 64
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F E+F + FGSGW
Sbjct: 65 FNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWG 124
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
WLA N KLV++++ +A NP+
Sbjct: 125 WLALNNNN----------------KLVILQTHDAGNPI 146
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL D++ K +
Sbjct: 9 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAI 63
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F E+F + FGSGW
Sbjct: 64 FNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWG 123
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
WLA N KLV++++ +A NP+
Sbjct: 124 WLALNNNN----------------KLVILQTHDAGNPI 145
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI-- 104
AK EL PY +ALEPH K+T+ H KHH Y+ NLN + G EL S+E+++
Sbjct: 11 AKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVAN 70
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ + NN NH FFW IE FGSFD F EEF
Sbjct: 71 LNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFA 130
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS 219
A AT+FGSGWAWL L V + N +D L K+P + VW+++
Sbjct: 131 KAGATRFGSGWAWLVVNNGELEVTSTPN-----QDSPLTEGKTP-VIGLDVWEHA 179
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL +++ K +
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIM-----KESTGAI 64
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F EF + FGSGW
Sbjct: 65 FNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWG 124
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
WL N KLV++++ +A NP+
Sbjct: 125 WLVLNNNN----------------KLVILQTHDAGNPI 146
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
F L+ P+ +++ +S ++H GKHH+ YV NLN I GT+ + SL I++ +
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSL--FAILTKS 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ +NH+F+W +E+DFGS ++F E+F +A T
Sbjct: 60 SGGV---FNNAAQIYNHDFYWDCLSPKATALSDELKGA-LEKDFGSLEKFKEDFIKSATT 115
Query: 170 QFGSGWAWLAY-----KANRLNVDNAVNPFPSEKDKKLVV 204
FGSGW W AY K + NA P +K LVV
Sbjct: 116 LFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVV 155
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI--- 104
A + L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 2 AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 61
Query: 105 --IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDR 158
+ + KG + NNA NH FW I FGSFD
Sbjct: 62 DRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDA 118
Query: 159 FLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
F ++F+ AA T+FGSGWAWL KD KL VV + N NPL+
Sbjct: 119 FKQKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLM 158
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 20/169 (11%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVI--I 105
KF++KP PY +ALEP++ K+T++ H KH++AYV+ LN + EL SL +++ +
Sbjct: 5 KFKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNL 64
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKS 165
S K NNA A+NH+FF+ I+RDFGSF++F +EF+
Sbjct: 65 DSLPKDIATTVRNNAGGAYNHKFFF-DIMTPEKTIPSESLKEAIDRDFGSFEKFKQEFQK 123
Query: 166 AAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214
+A FGSGWAWL + KD KL ++ +PN +P+
Sbjct: 124 SALDVFGSGWAWLV----------------ATKDGKLSIMTTPNQDSPV 156
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI----- 104
+ L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 23 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 82
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDRFL 160
+ + KG + NNA NH FW I FGSFD F
Sbjct: 83 VPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFK 139
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
++F+ AA T+FGSGWAWL KD KL VV + N NPL+
Sbjct: 140 QKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLM 177
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI----- 104
+ L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 62
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDRFL 160
+ + KG + NNA NH FW I FGSFD F
Sbjct: 63 VPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFK 119
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
++F+ AA T+FGSGWAWL KD KL VV + N NPL+
Sbjct: 120 QKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLM 157
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ +V N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H K H+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVN 192
F+ AAA++FGSGWAWL K ++L V + N
Sbjct: 116 FEKAAASRFGSGWAWLVLKGDKLAVVSTAN 145
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IV 106
+EL PY +ALEPH+ K+T+ H KHH YV NLNK + G T L S+E+++ +
Sbjct: 3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLD 62
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
S + NN NH+ FW I FGSFD+F E+F +A
Sbjct: 63 SVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAA 122
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSP 208
AA +FGSGWAWL +L + + N +D L K+P
Sbjct: 123 AAGRFGSGWAWLVVNNGKLEITSTPN-----QDSPLSEGKTP 159
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 60 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 119
+ ++P MS LE H+ KHH AYV+ LN +G +G ++E++I+ + FN
Sbjct: 44 DGIQPVMSPRQLELHYSKHHSAYVDKLN--TLGKGYEGKTIEEIILATTGINESKVMFNQ 101
Query: 120 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 179
AAQ +NH FFW I + FGS D F+ F+ A FGSGW WL
Sbjct: 102 AAQHFNHSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWL- 159
Query: 180 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
V+P + K+L++ + NA PL
Sbjct: 160 ----------CVDP----QTKELLIDSTSNAGCPLT 181
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI-- 104
AKFEL PY +ALEP + K+T+ H KHH YV LN + G E L SL D+I
Sbjct: 1 AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISN 60
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ + + NN NH FW I +GSF++F EEF
Sbjct: 61 LDAVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFA 120
Query: 165 SAAATQFGSGWAWLAYKANRLNV 187
+AAA +FGSGWAWL + +
Sbjct: 121 AAAAGRFGSGWAWLVVNNGEIEI 143
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 60 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 119
+ P S +E H+ KHH+AYV+ LN + GT DG S+E++I+ N FN
Sbjct: 53 DGCAPVFSPRQMELHYTKHHKAYVDKLN-ALAGTTYDGKSIEEIILAVANDAEKKGLFNQ 111
Query: 120 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 179
AAQ +NH F++ + FGS ++F + F A FGSGW WL
Sbjct: 112 AAQHFNHTFYF-RCITPNGKAMPKSFESAVTAQFGSVEQFKDAFVQAGVNNFGSGWTWLC 170
Query: 180 Y---KANRLNVDNAVN 192
N+L +DN N
Sbjct: 171 VDPSNKNQLVIDNTSN 186
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVI--IVS 107
EL P PY +ALE + +T++ H KHH AYV NLN + EL S+E ++ + S
Sbjct: 39 ELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNS 98
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ NN NH FW I + FGSF+ F ++F A
Sbjct: 99 VPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAG 158
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
+FGSGW WL NP +L VV +PN NP++
Sbjct: 159 GDRFGSGWVWLVR-----------NP-----QGQLQVVSTPNQDNPIM 190
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVS 107
F + P P+ + L +SK + H+ KHH+ YV LN + L S+E++I
Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTE 61
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
KG P FN AAQ +NH F+W I FGSF +F EEF + A
Sbjct: 62 --KG---PIFNLAAQIFNHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVA 116
Query: 168 ATQFGSGWAWLAYKAN 183
FGSGWAWL N
Sbjct: 117 VGHFGSGWAWLVKDTN 132
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVS 107
F + P P+ + L +SK+ + +H+ KHH YV LN L S+E++I
Sbjct: 3 FSIPPLPWGYDGLAAKGISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEIIRTE 62
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
KG P FN AAQ +NH F+W I FGSF +F EEF +AA
Sbjct: 63 --KG---PIFNLAAQIFNHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV 215
FGSGWAWL KKL V ++ +A PL
Sbjct: 118 VGHFGSGWAWLVQDTTT---------------KKLKVFQTHDAGCPLT 150
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IV 106
F+L YP ALEPH+ T+E H KHH AYV NLN + L G+ +E ++ +
Sbjct: 4 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLA 63
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
+ + NN NH FW I+ FG F E+ A
Sbjct: 64 ALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQA 123
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS 219
A +FGSGWAWL +PF KL V+ +PN NP++ ++
Sbjct: 124 AMGRFGSGWAWL-----------VKDPF-----GKLHVLSTPNQDNPVMEGFT 160
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 56 PYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLP 115
PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQTALQPAL 64
Query: 116 PFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGW 175
FN NH FW I+RDFGSFD+F E+ +A+ GSGW
Sbjct: 65 KFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGW 123
Query: 176 AWLAYKANRLNVDNAVNP 193
WL + R ++ A P
Sbjct: 124 GWLGFNKERGHLQIAACP 141
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 58
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 59 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 117
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 118 GVQGSGWGWLGFNKERGHLQIAACP 142
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII---- 105
+EL PYP +ALEPH+S++ L H KHH+AYV+ N + + S DV I
Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAAL 68
Query: 106 --VSYNKGNMLPPFNNAAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLE 161
+S++ G + H FFW IE+DFGSF+RF +
Sbjct: 69 KELSFHVGGYVL----------HLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRK 118
Query: 162 EFKSAAATQFGSGWAWLAY--KANRLNV 187
EF AA + GSGWA L Y + +RL +
Sbjct: 119 EFSQAAISAEGSGWAVLTYCQRTDRLFI 146
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA- 56
Query: 109 NKGNMLPPFN-NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ + P N NH FW I+RDFGSFD+F E+ +A+
Sbjct: 57 -QIALQPALKLNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA- 56
Query: 109 NKGNMLPPFN-NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ + P N NH FW I+RDFGSFD+F E+ +A+
Sbjct: 57 -QIALQPALKANGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAHVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKXQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKQHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAVVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K+H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K+H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAAVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAANVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKXQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACP 141
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IV 106
F+L Y + LEP++ +TL H GKHH YV NLN + +EL SLE+++ +
Sbjct: 13 FQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLE 72
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
+ K + NN + H FW I+ F +FD ++ A
Sbjct: 73 TLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKA 132
Query: 167 AATQFGSGWAWLAYKANRLNV 187
A ++FGSG+ WL L+V
Sbjct: 133 AISRFGSGYGWLVLDGEELSV 153
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K H AYV NLN V E +L + +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKVHAAYVNNLN---VTEEKYQEALAKGDVTAQ 58
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 59 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 117
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSGW WL + R ++ A P
Sbjct: 118 GVQGSGWGWLGFNKERGHLQIAACP 142
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNP 193
GSG+ WL + R ++ A P
Sbjct: 117 GVQGSGFGWLGFNKERGHLQIAACP 141
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 46 ISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII 105
+S ++ L P PYP +AL+P++S+ +E H KHH+ YV LN + + + + +
Sbjct: 12 MSQQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKL 71
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWX----XXXXXXXXXXXXXXXXXIERDFGSFDRFLE 161
VS + FN NH FW IE+ +GSFD+F +
Sbjct: 72 VSVQQA---IKFNGGGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKD 127
Query: 162 EFKSAAATQFGSGWAWLAYKANRLNVD 188
F + GSGW WL + +D
Sbjct: 128 AFNTTLLGIQGSGWGWLVTDGPKGKLD 154
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAY 180
T GSGWA L +
Sbjct: 118 TTVQGSGWAALGW 130
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAY 180
T GSGWA L +
Sbjct: 118 TTVQGSGWAALGW 130
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY LEP +S + ++ H KHH YV NLN+ +E+ + +
Sbjct: 2 KHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAV 50
Query: 109 NKGNM-----LPP---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
+KGN+ L P FN NH FW I+ DFGS D
Sbjct: 51 SKGNVKEAIALQPALKFNGGGHI-NHSIFW-TNLAKDGGEPSAELLTAIKSDFGSLDNLQ 108
Query: 161 EEFKSAAATQFGSGWAWLAY--KANRLNVDNAVNPFPSEKDKKLV 203
++ ++ GSGW WL Y K L V N P E LV
Sbjct: 109 KQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLV 153
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAY 180
T GSGWA L +
Sbjct: 118 TTVQGSGWAALGW 130
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAY 180
T GSGWA L +
Sbjct: 118 TTVQGSGWAALGW 130
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 56 PYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLP 115
PY ALEP +S T+++H+ KHH+ Y++ L G ++L+ ++ + ++
Sbjct: 85 PYGLEALEPVISAATVDFHYNKHHQGYIQKL-LDATGLPESRINLKSLVTLGPDRAGE-N 142
Query: 116 PFNNAAQAWNHEFFWXXXXXXXXXXXXX--XXXXXIERDFGSFDRFLEEFKSAAATQFGS 173
FN A Q +NH +W I +G+ D E F A FGS
Sbjct: 143 VFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGS 202
Query: 174 GWAWLAYKANRLNVD 188
GW WL + +D
Sbjct: 203 GWIWLVWDTRERRLD 217
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K+EL P PY +ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLL--ERLEKVVKGDLQTGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + +GSFDRF + F
Sbjct: 66 DIQGIIRGLTFNINGHKL-HALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFT 124
Query: 165 SAAATQFGSGWAWLAYKANRLNV 187
A + G+GWA L Y N+
Sbjct: 125 ETANSLPGTGWAVLYYDTESGNL 147
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAY 180
T G GWA L +
Sbjct: 118 TTVQGCGWAALGW 130
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
++EL P PY +ALEP +S +TL YH KHH YV N + E L+G L D+ +
Sbjct: 18 RYELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNG-QLTDIDVR 76
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXX--XXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + FGSFD+F + F
Sbjct: 77 AVSRD---FEFNYGGHIL-HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFG 132
Query: 165 SAAATQFGSGWAWLAY 180
AA G GWA LAY
Sbjct: 133 DAAKNVEGVGWAILAY 148
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K+EL P PY +ALEP++SKD ++ H+ HH+ +V N + L+ + D+ Y
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGFVNGANSLL--ERLEKVVKGDLQTGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + +GSFDRF + F
Sbjct: 66 DIQGIIRGLTFNINGHKL-HALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFT 124
Query: 165 SAAATQFGSGWAWLAYKANRLNV 187
A + G+GWA L Y N+
Sbjct: 125 ETANSLPGTGWAVLYYDTESGNL 147
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 62/159 (38%), Gaps = 23/159 (14%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P+ LEP +S + ++ H KHH YV NLN+ +E+ + +
Sbjct: 2 KHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAV 50
Query: 109 NKGNM-----LPP---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
+KGN+ L P FN NH FW I+RDFGS D
Sbjct: 51 SKGNLKEAIALQPALKFNGGGHI-NHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQ 108
Query: 161 EEFKSAAATQFGSGWAWLAY--KANRLNVDNAVNPFPSE 197
+ GSGW WL Y K L + N P E
Sbjct: 109 KRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPLE 147
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
++EL P PY NALEP++ ++ ++ H KHH YV+ N + E L G DV V
Sbjct: 6 RYELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAV 65
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ FN A H FW IE+ FG F++F F
Sbjct: 66 MRDFS-----FNYAGHIM-HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFS 119
Query: 165 SAAATQFGSGWAWLAY 180
+AA T G GW LA+
Sbjct: 120 AAAKTVEGVGWGVLAF 135
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVI 104
+ ++ L P PY NALEP++S + ++ H KHH+ YV N + E G + D+
Sbjct: 15 TKRYTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIR 74
Query: 105 IVSYN-----KGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFD 157
V + G++L H FW I + FGSF+
Sbjct: 75 AVLRDLSFHLNGHIL-----------HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFE 123
Query: 158 RFLEEFKSAAATQFGSGWAWLAYK 181
+F EEF AA G GWA L Y+
Sbjct: 124 KFKEEFSQAAKNVEGVGWAILVYE 147
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM--SLEDVII 105
A + L PY +ALEP++S + +E H KHH+AYV+ N T LD + + +
Sbjct: 1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGAN-----TALDKLAEARDKADF 55
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXX--XXXXXXXIERDFGSFDRFLEEF 163
+ NK FN A NH FW I+ FGSFD +F
Sbjct: 56 GAINKLEKDLAFNLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQF 114
Query: 164 KSAAATQFGSGWAWLAYK--ANRLNV 187
+AA GSGWA L + R+N
Sbjct: 115 TAAATGIQGSGWASLVWDPLGKRINT 140
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
++E PY +ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y
Sbjct: 8 RYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLL--DRLEKLIKGDLPQGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ +L FN H +W I++ +GSFDRF + F
Sbjct: 66 DLQGILRGLTFNINGHKL-HAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFS 124
Query: 165 SAAATQFGSGWAWLAY 180
+A + GSGW L Y
Sbjct: 125 ESANSLPGSGWTVLYY 140
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
K L + +ALEP++SK+ + H KHH AYV N I E + L+ V+ +
Sbjct: 7 KISLPKIDWALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEI 66
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXX-----XXXXXXXXXIERDFGSFDRFLE 161
N F+ NH FW I +GS ++
Sbjct: 67 QQN-----IKFHGGGHT-NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLID 120
Query: 162 EFKSAAATQFGSGWAWLA 179
S A GSGWA++
Sbjct: 121 ITNSKLAGIQGSGWAFIV 138
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVI 104
+ ++ L P PY NALEP++S + + H KHH+ YV N + E G + D+
Sbjct: 15 TKRYTLPPLPYAYNALEPYISAEIXQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIR 74
Query: 105 IVSYN-----KGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFD 157
V + G++L H FW I + FGSF+
Sbjct: 75 AVLRDLSFHLNGHIL-----------HSIFWPNXAPPGKGGGKPGGKIADLINKFFGSFE 123
Query: 158 RFLEEFKSAAATQFGSGWAWLAYK 181
+F EEF AA G GWA L Y+
Sbjct: 124 KFKEEFSQAAKNVEGVGWAILVYE 147
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVS---YNKGNMLPP 116
ALEP++S E H+ KHH+ YV N T +D L D++ N M+
Sbjct: 21 ALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAI 75
Query: 117 FNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAAT 169
N NH FW I+ FGS D ++ + A
Sbjct: 76 QQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAG 135
Query: 170 QFGSGWAWLA 179
GSGWA++
Sbjct: 136 VQGSGWAFIV 145
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVS---YNKGNMLPP 116
ALEP++S E H+ KHH+ YV N T +D L D++ N M+
Sbjct: 21 ALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAI 75
Query: 117 FNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAAT 169
N NH FW I+ FGS D ++ + A
Sbjct: 76 QQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAG 135
Query: 170 QFGSGWAWLA 179
GSGWA++
Sbjct: 136 VQGSGWAFIV 145
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGN---MLPPF 117
ALEP++S E H+ HH+ YV N + + L D++ + N M+
Sbjct: 13 ALEPYISGQINELHYTXHHQTYVNGFNTAVDQFQ----ELSDLLAXEPSPANARXMIAIQ 68
Query: 118 NN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
N NH FW I+ FGS D + + A
Sbjct: 69 QNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGV 128
Query: 171 FGSGWAWLA 179
GSGWA++
Sbjct: 129 QGSGWAFIV 137
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGN---MLPPF 117
ALEP++S E H+ HH+ +V N + + L D++ + N M+
Sbjct: 13 ALEPYISGQINELHYTXHHQTFVNGFNTAVDQFQ----ELSDLLAXEPSPANARXMIAIQ 68
Query: 118 NN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
N NH FW I+ FGS D + + A
Sbjct: 69 QNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGV 128
Query: 171 FGSGWAWLA 179
GSGWA++
Sbjct: 129 QGSGWAFIV 137
>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 509
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 73 YHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 106
Y HRAY QI EL GMSL ++ ++
Sbjct: 435 YSLAMLHRAYFGKAKSQIASQELPGMSLRELFMI 468
>pdb|2ZF3|A Chain A, Crystal Structure Of Vioe
pdb|2ZF3|B Chain B, Crystal Structure Of Vioe
pdb|2ZF3|C Chain C, Crystal Structure Of Vioe
pdb|2ZF3|D Chain D, Crystal Structure Of Vioe
pdb|2ZF3|E Chain E, Crystal Structure Of Vioe
pdb|2ZF3|F Chain F, Crystal Structure Of Vioe
pdb|2ZF4|A Chain A, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
pdb|2ZF4|B Chain B, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
pdb|2ZF4|C Chain C, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
pdb|2ZF4|D Chain D, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
pdb|2ZF4|E Chain E, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
pdb|2ZF4|F Chain F, Crystal Structure Of Vioe Complexed With Phenylpyruvic
Acid
Length = 194
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDK--KLVVVKSPNAVNPLVWDYSVS 221
Q SG+ W Y+ + +D NP+ SE+D +L + + NA + W V+
Sbjct: 32 QLTSGYCWFDYERDICRIDGLFNPW-SERDTGYRLWMSEVGNAASGRTWKQKVA 84
>pdb|3BMZ|A Chain A, Violacein Biosynthetic Enzyme Vioe
pdb|3BMZ|B Chain B, Violacein Biosynthetic Enzyme Vioe
Length = 199
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDK--KLVVVKSPNAVNPLVWDYSVS 221
Q SG+ W Y+ + +D NP+ SE+D +L + + NA + W V+
Sbjct: 29 QLTSGYCWFDYERDICRIDGLFNPW-SERDTGYRLWMSEVGNAASGRTWKQKVA 81
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 58 PPNALEPH----MSKDTLEYHWGKHHRAYVENLN---KQIVGTELDGMSLEDVIIVSYNK 110
P + L+P +S + +E H+ H++ YV N +++ S + Y +
Sbjct: 7 PKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEYRE 66
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
+ FN HE ++ IE D G D E K AAA
Sbjct: 67 LKVEETFNYMGVVL-HELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELK-AAAMA 124
Query: 171 FGSGWAWLA 179
F GWA L
Sbjct: 125 F-RGWAILG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,304,185
Number of Sequences: 62578
Number of extensions: 281954
Number of successful extensions: 747
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 100
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)