Query 027206
Match_columns 226
No_of_seqs 169 out of 1141
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 1.6E-55 3.5E-60 396.6 18.1 192 24-218 24-215 (299)
2 PLN02184 superoxide dismutase 100.0 2.4E-54 5.1E-59 373.9 15.4 157 45-218 6-162 (212)
3 COG0605 SodA Superoxide dismut 100.0 3.1E-54 6.8E-59 370.0 15.6 154 47-218 1-157 (204)
4 PRK10543 superoxide dismutase; 100.0 1.7E-53 3.6E-58 363.9 15.3 150 48-218 1-150 (193)
5 PRK10925 superoxide dismutase; 100.0 5.2E-52 1.1E-56 357.9 14.1 150 48-216 1-153 (206)
6 PLN02622 iron superoxide dismu 100.0 1.8E-51 4E-56 365.2 15.5 169 33-218 33-202 (261)
7 PTZ00078 Superoxide dismutase 100.0 8.9E-50 1.9E-54 340.9 15.1 144 53-217 1-144 (193)
8 KOG0876 Manganese superoxide d 100.0 1.9E-48 4.2E-53 337.9 14.9 174 30-219 7-183 (234)
9 PLN02471 superoxide dismutase 100.0 5.4E-48 1.2E-52 337.9 14.8 149 48-217 29-182 (231)
10 PF00081 Sod_Fe_N: Iron/mangan 100.0 2.1E-32 4.5E-37 204.7 2.9 82 49-134 1-82 (82)
11 PF02777 Sod_Fe_C: Iron/mangan 99.8 2.9E-20 6.3E-25 144.5 7.6 66 139-219 1-66 (106)
12 PF13348 Y_phosphatase3C: Tyro 45.9 23 0.00049 24.6 2.7 19 144-162 33-51 (68)
13 COG4700 Uncharacterized protei 33.4 32 0.0007 30.5 2.2 21 72-92 227-247 (251)
14 PF05416 Peptidase_C37: Southa 33.2 30 0.00066 33.8 2.2 11 170-180 377-387 (535)
15 TIGR02118 conserved hypothetic 29.7 48 0.001 24.7 2.4 22 64-86 10-31 (100)
16 COG3207 DIT1 Pyoverdine/dityro 28.8 15 0.00032 33.8 -0.7 64 151-214 214-281 (330)
17 PF07110 EthD: EthD domain; I 22.1 81 0.0018 22.4 2.4 23 64-86 1-23 (95)
18 KOG0394 Ras-related GTPase [Ge 22.0 49 0.0011 29.0 1.3 21 149-169 93-113 (210)
19 PF12826 HHH_2: Helix-hairpin- 20.8 77 0.0017 22.0 1.9 32 143-174 13-44 (64)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=1.6e-55 Score=396.61 Aligned_cols=192 Identities=84% Similarity=1.428 Sum_probs=172.1
Q ss_pred CCCcchhhhhhhhhcccccccccceeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHH
Q 027206 24 QFPWRSKEKLQRKYTGKAVYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDV 103 (226)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~l~~~sl~~i 103 (226)
..||.-+ +|.|..+.....+.++|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++++++|
T Consensus 24 ~~~~~~~---~~~~~~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~l~~~sl~ei 100 (299)
T PLN02685 24 RMQWKGK---RRTCTRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDV 100 (299)
T ss_pred cchhhhh---hhhhhhhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCchhhcCCHHHH
Confidence 4666543 4456666665666788999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHhcCCCCCCccccchhhhhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 027206 104 IIVSYNKGNMLPPFNNAAQAWNHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKAN 183 (226)
Q Consensus 104 i~~~~~~~~~~~~fN~ag~~~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~ 183 (226)
|.....++....+||+|||||||+|||++|+|+++++|++.|.++|+++|||||+||++|.++|.++|||||+|||++.+
T Consensus 101 i~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~ 180 (299)
T PLN02685 101 VLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKAN 180 (299)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccc
Confidence 87665555555689999999999999999999888899999999999999999999999999999999999999999988
Q ss_pred cccccCCCCCCCCCCCCceEEEeeCCCCCCCcCCc
Q 027206 184 RLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 218 (226)
Q Consensus 184 ~l~v~~~~~~~~~~~~~~L~Iv~T~N~~~Pl~~~~ 218 (226)
+++|.++.+|.+...+++|.|++|+||++|++.|.
T Consensus 181 ~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~ 215 (299)
T PLN02685 181 RLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDY 215 (299)
T ss_pred cccccccccccccccCCceeEEeccCCCCCccCCC
Confidence 99999999988765678999999999999998764
No 2
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=2.4e-54 Score=373.89 Aligned_cols=157 Identities=71% Similarity=1.283 Sum_probs=145.4
Q ss_pred ccceeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCCccccchhhh
Q 027206 45 QISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 124 (226)
Q Consensus 45 ~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~ 124 (226)
.+.++|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++++++||.....++....+||+||||+
T Consensus 6 ~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~~~~~l~~ii~~~~~~~~~~~ifnnagg~~ 85 (212)
T PLN02184 6 AVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAW 85 (212)
T ss_pred hhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcccchHHHHHHhHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999876655544456899999999
Q ss_pred hhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceEE
Q 027206 125 NHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVV 204 (226)
Q Consensus 125 NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~I 204 (226)
||+|||++|+|+++++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| .++|.|
T Consensus 86 NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~-----------------~~~L~i 148 (212)
T PLN02184 86 NHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS-----------------NEKLKV 148 (212)
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEE-----------------CCEEEE
Confidence 999999999998878899999999999999999999999999999999999999997 368999
Q ss_pred EeeCCCCCCCcCCc
Q 027206 205 VKSPNAVNPLVWDY 218 (226)
Q Consensus 205 v~T~N~~~Pl~~~~ 218 (226)
++|+||++|++.+.
T Consensus 149 ~~t~n~~~P~~~~~ 162 (212)
T PLN02184 149 VKTPNAVNPLVLGS 162 (212)
T ss_pred EeecCCCCCccCCC
Confidence 99999999998875
No 3
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-54 Score=369.99 Aligned_cols=154 Identities=51% Similarity=0.939 Sum_probs=141.9
Q ss_pred ceeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCHHHHHHHHhcCCCCCCccccchhhh
Q 027206 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 124 (226)
Q Consensus 47 ~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~--l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~ 124 (226)
+|.|+||+|||+|++|||+||++||++||+|||++||++||+++++.+ ++++++++++......++ .++||+|||+
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~ 78 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHW 78 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhh
Confidence 367999999999999999999999999999999999999999999843 899999999876654332 5899999999
Q ss_pred hhhhhhhccCCC-CCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceE
Q 027206 125 NHEFFWESMKPG-GGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLV 203 (226)
Q Consensus 125 NH~fFw~~L~P~-~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~ 203 (226)
||+|||++|+|+ ++++|+|+|+++|+++|||+|+||++|.++|.++|||||+|||+| ..++|.
T Consensus 79 NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~----------------~~~kL~ 142 (204)
T COG0605 79 NHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYD----------------PDGKLE 142 (204)
T ss_pred hHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEEC----------------CCCcEE
Confidence 999999999996 888999999999999999999999999999999999999999997 356999
Q ss_pred EEeeCCCCCCCcCCc
Q 027206 204 VVKSPNAVNPLVWDY 218 (226)
Q Consensus 204 Iv~T~N~~~Pl~~~~ 218 (226)
|++|+|||+|++++.
T Consensus 143 i~~t~n~~~p~~~~~ 157 (204)
T COG0605 143 IVSTYNQDTPLMWGS 157 (204)
T ss_pred EEeccCCCCcccCCC
Confidence 999999999999974
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.7e-53 Score=363.85 Aligned_cols=150 Identities=49% Similarity=0.908 Sum_probs=139.4
Q ss_pred eeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCCccccchhhhhhh
Q 027206 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHE 127 (226)
Q Consensus 48 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~NH~ 127 (226)
|.|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++++++||.... ..+||+||||+||+
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~~~~~l~~ii~~~~-----~~ifnna~g~~NH~ 75 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSSE-----GGVFNNAAQVWNHT 75 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCHHHHHHhhH-----HHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999998899999999885421 35899999999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceEEEee
Q 027206 128 FFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKS 207 (226)
Q Consensus 128 fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~Iv~T 207 (226)
|||++|+|.++++|+++|.++|+++|||+|+||++|.++|.++|||||||||+| .+++|.|++|
T Consensus 76 lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~----------------~~~~L~I~~t 139 (193)
T PRK10543 76 FYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKN----------------ADGKLAIVST 139 (193)
T ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCCEEEEec
Confidence 999999998777899999999999999999999999999999999999999996 3589999999
Q ss_pred CCCCCCCcCCc
Q 027206 208 PNAVNPLVWDY 218 (226)
Q Consensus 208 ~N~~~Pl~~~~ 218 (226)
+|||+|++.+.
T Consensus 140 ~n~~~p~~~~~ 150 (193)
T PRK10543 140 SNAGTPLTTDA 150 (193)
T ss_pred cCCCCCcCCCC
Confidence 99999998764
No 5
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=5.2e-52 Score=357.85 Aligned_cols=150 Identities=43% Similarity=0.696 Sum_probs=135.7
Q ss_pred eeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCHHHHHHHHhcCCC--CCCccccchhhh
Q 027206 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSYNKGN--MLPPFNNAAQAW 124 (226)
Q Consensus 48 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~-~l~~~sl~~ii~~~~~~~~--~~~~fN~ag~~~ 124 (226)
|.|+||+|||+|++|||+||++||++||+|||++||++||++++++ +++++++++||......++ +..+||||||++
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~ 80 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA 80 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999985 5788999999865543332 234889999999
Q ss_pred hhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceEE
Q 027206 125 NHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVV 204 (226)
Q Consensus 125 NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~I 204 (226)
||+|||++|+|+ +.|++.|+++|+++|||||+||++|.++|.++|||||+|||+| +++|.|
T Consensus 81 NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~-----------------~~~L~i 141 (206)
T PRK10925 81 NHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK-----------------GDKLAV 141 (206)
T ss_pred HHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe-----------------CCEEEE
Confidence 999999999993 4799999999999999999999999999999999999999997 368999
Q ss_pred EeeCCCCCCCcC
Q 027206 205 VKSPNAVNPLVW 216 (226)
Q Consensus 205 v~T~N~~~Pl~~ 216 (226)
++|+|||+|++.
T Consensus 142 ~~t~N~~~p~~~ 153 (206)
T PRK10925 142 VSTANQDSPLMG 153 (206)
T ss_pred EeccCCCCCccc
Confidence 999999999974
No 6
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.8e-51 Score=365.16 Aligned_cols=169 Identities=56% Similarity=1.049 Sum_probs=149.0
Q ss_pred hhhhhcccccccccceeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCHHHHHHHHhcCC
Q 027206 33 LQRKYTGKAVYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVIIVSYNKG 111 (226)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~-l~~~sl~~ii~~~~~~~ 111 (226)
.+..|.+++. .+.+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++..++++||.....++
T Consensus 33 ~~~~~~~~~~--~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~ 110 (261)
T PLN02622 33 QRRRSLQRAS--KVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNG 110 (261)
T ss_pred cccccccccc--cccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccc
Confidence 3334444443 45678999999999999999999999999999999999999999998864 67889999986655555
Q ss_pred CCCCccccchhhhhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCC
Q 027206 112 NMLPPFNNAAQAWNHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAV 191 (226)
Q Consensus 112 ~~~~~fN~ag~~~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~ 191 (226)
....+||+||||+||+|||++|+|++++.|++.|.++|+++|||+|+||++|.++|.++|||||+|||+|
T Consensus 111 ~~~~vfnna~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d---------- 180 (261)
T PLN02622 111 NPLPEFNNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLK---------- 180 (261)
T ss_pred hhHHHHHHHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEe----------
Confidence 4556899999999999999999998777899999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEeeCCCCCCCcCCc
Q 027206 192 NPFPSEKDKKLVVVKSPNAVNPLVWDY 218 (226)
Q Consensus 192 ~~~~~~~~~~L~Iv~T~N~~~Pl~~~~ 218 (226)
..+++|.|++|+|||+|++++.
T Consensus 181 -----~~~g~L~I~~t~N~~~Pl~~~~ 202 (261)
T PLN02622 181 -----REERRLEVVKTSNAINPLVWDD 202 (261)
T ss_pred -----CCCCeEEEEecCCCCCCccCCC
Confidence 4468899999999999998874
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=8.9e-50 Score=340.90 Aligned_cols=144 Identities=47% Similarity=0.876 Sum_probs=133.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCCccccchhhhhhhhhhhc
Q 027206 53 KPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWES 132 (226)
Q Consensus 53 p~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~NH~fFw~~ 132 (226)
|+|||+|++|||+||++||++||+|||++||++||++++++++++++++++|.... ..+||+|||++||+|||++
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~~ 75 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWLS 75 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999998888899999885432 2589999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceEEEeeCCCCC
Q 027206 133 MKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVN 212 (226)
Q Consensus 133 L~P~~~~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~Iv~T~N~~~ 212 (226)
|+|+++++|+++|+++|+++|||+|+||++|.++|.++|||||||||++ .+++|.|++|+||++
T Consensus 76 L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~----------------~~~~L~i~~t~n~~~ 139 (193)
T PTZ00078 76 MGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK----------------NDGKLEIVQTHDAGN 139 (193)
T ss_pred cCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCcEEEEeccCCCC
Confidence 9998878899999999999999999999999999999999999999975 368999999999999
Q ss_pred CCcCC
Q 027206 213 PLVWD 217 (226)
Q Consensus 213 Pl~~~ 217 (226)
|++.+
T Consensus 140 p~~~~ 144 (193)
T PTZ00078 140 PIKDN 144 (193)
T ss_pred CccCC
Confidence 99764
No 8
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=337.86 Aligned_cols=174 Identities=41% Similarity=0.793 Sum_probs=151.0
Q ss_pred hhhhhhhhccccccc-ccceeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCHHHHHHHH
Q 027206 30 KEKLQRKYTGKAVYG-QISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVIIVS 107 (226)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~-l~~~sl~~ii~~~ 107 (226)
.+.+.++|..+.... .++..++||+|||+|++|||.||+++|++||+|||++||++||+++++++ +.++...+++. +
T Consensus 7 ~~~~~~~~~~~~~~~~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t 85 (234)
T KOG0876|consen 7 LTHLKKRRSLKLLFSLAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-T 85 (234)
T ss_pred HHHHHhhcccceeeheeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-h
Confidence 444555665555544 56778999999999999999999999999999999999999999999876 45555555444 6
Q ss_pred hcCCCCCCccccchhhhhhhhhhhccCCCCCCCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCccc
Q 027206 108 YNKGNMLPPFNNAAQAWNHEFFWESMKPGGGGKPSGE-LLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLN 186 (226)
Q Consensus 108 ~~~~~~~~~fN~ag~~~NH~fFw~~L~P~~~~~P~g~-L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~ 186 (226)
+..++....||+||+++||+|||++|.|+++++|.+. |.++|+++|||+|+|+++|.+++.++|||||+|||+|
T Consensus 86 ~~~~~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~----- 160 (234)
T KOG0876|consen 86 AIAPQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYN----- 160 (234)
T ss_pred ccChhhhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEc-----
Confidence 6677778899999999999999999999888888876 9999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCceEEEeeCCCCCCCcCCcc
Q 027206 187 VDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS 219 (226)
Q Consensus 187 v~~~~~~~~~~~~~~L~Iv~T~N~~~Pl~~~~~ 219 (226)
...++|.|++|+||++|+.++.+
T Consensus 161 ----------~~~~kL~i~~T~Na~~P~~~~t~ 183 (234)
T KOG0876|consen 161 ----------KELKKLFILTTYNAGDPLVWTTG 183 (234)
T ss_pred ----------CCCCeEEEEecCCCCCCeeccCC
Confidence 34479999999999999999744
No 9
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=5.4e-48 Score=337.88 Aligned_cols=149 Identities=32% Similarity=0.562 Sum_probs=129.1
Q ss_pred eeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCHHHHHHHHhcCCCCCCccccchhhhh
Q 027206 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWN 125 (226)
Q Consensus 48 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~--l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~N 125 (226)
++|+||+|||+|++|||+||++||++||+|||++||++||+++++.+ .+..++.+++.. ...++||+|||+|
T Consensus 29 ~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~N 102 (231)
T PLN02471 29 QTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHVN 102 (231)
T ss_pred ccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHHh
Confidence 57999999999999999999999999999999999999999997642 234456555431 1247889999999
Q ss_pred hhhhhhccCCC--CCCC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCce
Q 027206 126 HEFFWESMKPG--GGGK-PSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKL 202 (226)
Q Consensus 126 H~fFw~~L~P~--~~~~-P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L 202 (226)
|+|||++|+|. +++. |+++|.++|+++|||+|+||++|.++|.++|||||+|||+| +.+++|
T Consensus 103 H~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d---------------~~~~~L 167 (231)
T PLN02471 103 HSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLD---------------KELKKL 167 (231)
T ss_pred HHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEe---------------CCCCeE
Confidence 99999999985 3344 68999999999999999999999999999999999999998 346899
Q ss_pred EEEeeCCCCCCCcCC
Q 027206 203 VVVKSPNAVNPLVWD 217 (226)
Q Consensus 203 ~Iv~T~N~~~Pl~~~ 217 (226)
.|++|+|||+|++.+
T Consensus 168 ~i~~t~n~d~~~~~~ 182 (231)
T PLN02471 168 VVETTANQDPLVTKG 182 (231)
T ss_pred EEEeecCCCCCcccC
Confidence 999999999887654
No 10
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.97 E-value=2.1e-32 Score=204.71 Aligned_cols=82 Identities=50% Similarity=0.830 Sum_probs=69.4
Q ss_pred eeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCCccccchhhhhhhh
Q 027206 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEF 128 (226)
Q Consensus 49 ~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~l~~~sl~~ii~~~~~~~~~~~~fN~ag~~~NH~f 128 (226)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++++++++.... +..+||+|||+|||+|
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~~~~~~~~~~~~~~----~~~~~nn~gg~~NH~~ 76 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTELEGKSLEEIISNAL----RAALRNNAGGHYNHSF 76 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHHHTSTHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhh----hHHHHHHcchhhhHHH
Confidence 489999999999999999999999999999999999999999999999999999986532 3479999999999999
Q ss_pred hhhccC
Q 027206 129 FWESMK 134 (226)
Q Consensus 129 Fw~~L~ 134 (226)
||++|+
T Consensus 77 fw~~ls 82 (82)
T PF00081_consen 77 FWENLS 82 (82)
T ss_dssp HHHTB-
T ss_pred HHHHcC
Confidence 999995
No 11
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=99.82 E-value=2.9e-20 Score=144.48 Aligned_cols=66 Identities=52% Similarity=1.033 Sum_probs=60.8
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCeEEEEEEecCcccccCCCCCCCCCCCCceEEEeeCCCCCCCcCCc
Q 027206 139 GKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 218 (226)
Q Consensus 139 ~~P~g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~l~v~~~~~~~~~~~~~~L~Iv~T~N~~~Pl~~~~ 218 (226)
++|+++|+++|+++|||+|+||++|.++|.++|||||+|||+| +.+++|.|++|+|+++|+..+.
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d---------------~~~~~L~i~~t~n~~~p~~~~~ 65 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYD---------------PSDGKLSIISTPNHDTPIIWGL 65 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEE---------------TTTTEEEEEEEETTTBGGGGTE
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeec---------------cccceeeeeeecccccccchhh
Confidence 4799999999999999999999999999999999999999998 4678999999999999998875
Q ss_pred c
Q 027206 219 S 219 (226)
Q Consensus 219 ~ 219 (226)
.
T Consensus 66 ~ 66 (106)
T PF02777_consen 66 I 66 (106)
T ss_dssp E
T ss_pred c
Confidence 3
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=45.90 E-value=23 Score=24.61 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 027206 144 ELLELIERDFGSFDRFLEE 162 (226)
Q Consensus 144 ~L~~~I~~sFGS~d~fk~~ 162 (226)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4668999999999999854
No 13
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=33.37 E-value=32 Score=30.46 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 027206 72 EYHWGKHHRAYVENLNKQIVG 92 (226)
Q Consensus 72 ~~H~~kHh~~YV~~LN~~l~~ 92 (226)
.-||.|||++.++..|..+++
T Consensus 227 ~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHh
Confidence 359999999999999988764
No 14
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=33.16 E-value=30 Score=33.78 Aligned_cols=11 Identities=45% Similarity=1.202 Sum_probs=9.3
Q ss_pred CCCCeEEEEEE
Q 027206 170 QFGSGWAWLAY 180 (226)
Q Consensus 170 ~fGSGWvWLv~ 180 (226)
.|||||.+-|-
T Consensus 377 ~fGsGWGfWVS 387 (535)
T PF05416_consen 377 KFGSGWGFWVS 387 (535)
T ss_dssp EETTEEEEESS
T ss_pred ecCCceeeeec
Confidence 49999999883
No 15
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=29.72 E-value=48 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 027206 64 PHMSKDTLEYHWGKHHRAYVENL 86 (226)
Q Consensus 64 P~IS~~tl~~H~~kHh~~YV~~L 86 (226)
| +|.++++.||..+|.-.+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999998886
No 16
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.77 E-value=15 Score=33.83 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=43.2
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCeEEE--EEEe--cCcccccCCCCCCCCCCCCceEEEeeCCCCCCC
Q 027206 151 RDFGSFDRFLEEFKSAAATQFGSGWAW--LAYK--ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL 214 (226)
Q Consensus 151 ~sFGS~d~fk~~F~~~A~~~fGSGWvW--Lv~d--~~~l~v~~~~~~~~~~~~~~L~Iv~T~N~~~Pl 214 (226)
..|||+.+|+......|.+|.-.||+| |+.+ ++-+.++-+.-|-+..+.|.|....-..=.+|.
T Consensus 214 ~~~~Syk~~~r~~~~iA~gmi~r~~A~~nll~~~Fp~~iRlSIH~hp~~g~Kfgsl~~~~e~~f~tpw 281 (330)
T COG3207 214 DYQGSYKALQRDAKEIAYGMIQRSWAWGNLLADQFPRAIRLSIHPHPADGLKFGSLMMPTEDDFLTPW 281 (330)
T ss_pred cccccHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhheEEeecCCCCCccccccccccCchhhcCcc
Confidence 468999999999999999998899999 4544 344444433333344566666665555544554
No 17
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=22.14 E-value=81 Score=22.41 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 027206 64 PHMSKDTLEYHWGKHHRAYVENL 86 (226)
Q Consensus 64 P~IS~~tl~~H~~kHh~~YV~~L 86 (226)
|.+|.+.+.-||...|...|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999898877654
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=21.99 E-value=49 Score=28.97 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.3
Q ss_pred HHhhcCCHHHHHHHHHHHHhc
Q 027206 149 IERDFGSFDRFLEEFKSAAAT 169 (226)
Q Consensus 149 I~~sFGS~d~fk~~F~~~A~~ 169 (226)
+.++|+++++|+++|...|.-
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~~ 113 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQASP 113 (210)
T ss_pred ChhhhccHHHHHHHHHHhcCC
Confidence 347899999999999999963
No 19
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.80 E-value=77 Score=22.02 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCe
Q 027206 143 GELLELIERDFGSFDRFLEEFKSAAATQFGSG 174 (226)
Q Consensus 143 g~L~~~I~~sFGS~d~fk~~F~~~A~~~fGSG 174 (226)
..-.+.|.+.|||+|++.+.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 46788899999999998876555444444433
Done!