BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027207
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E22|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1
Length = 293
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGK----------LN 121
++ E E+ + L+ W + +G+ ++ +YD +GI K++ ++ + L+
Sbjct: 104 VITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLGLD 163
Query: 122 NATLFEEAGESNLLLD---HKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178
+ E SN D + H+ ++ S DGK + +AA + +L + +
Sbjct: 164 CSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQ----DFCQLVAQKQKRPT 219
Query: 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
+ + ++ L + GC P+PDL+L +GPV LGF W IR TEIV
Sbjct: 220 DLDVDT-LASLLSSNGC--PDPDLVLKFGPVDSTLGFLPWHIRLTEIV 264
>sp|Q6DHR8|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1
Length = 274
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 25/168 (14%)
Query: 76 SEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK-----------KSKESILGKLNNAT 124
+EE H + L+ W + +G+ +V +YD +G+ K K ++ +LG ++
Sbjct: 86 TEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKRNNSRLMEEILKQQQELLGMGSSKY 145
Query: 125 LFEEAGESNLLLDHKHIT----LEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
E +H+ ++ ++ S DG+ ++ +AA L + V+ Q+EK
Sbjct: 146 SVEILKNGTNKQEHQVLSCQSMVKVLSPDDGRLSIVQAAQQL-CRAVE-------QKEKT 197
Query: 181 FTEAHMS--EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
+ ++S ++L P+PDL+L +G V+ LGF W IR TEI+
Sbjct: 198 SKDINVSVLDSLLKESKNIPDPDLVLKFGTVQSTLGFLPWHIRLTEII 245
>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1
Length = 297
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 58 RYKALDIDKLRYLAI-----VIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKS 112
R++A D+ L+ L + V E + + L+ W + +G+ ++ +YD +GI K++
Sbjct: 90 RWRA-DVRSLQKLPVHMGLLVTEEVQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRN 148
Query: 113 KESILGKL----------NNATLFEEAGESNLLLDHK---HITLEFASFPDGKEAVAKAA 159
++ ++ + + E SN D ++ S DGK + +AA
Sbjct: 149 NSRLMDEILKQQQELLGQDCSKYSAEFANSNDKDDQDLNCPSAVKVLSPEDGKADIVRAA 208
Query: 160 NLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKG-PEPDLLLVYGPVRCHLGFPAW 218
F + V Q+++ T+ + + G P+PDL+L +GPV LGF W
Sbjct: 209 QD-FCQLVA-------QQQRKPTDLDVDLLGSLLSSHGFPDPDLVLKFGPVDSTLGFLPW 260
Query: 219 RIRYTEIV 226
+IR TEIV
Sbjct: 261 QIRLTEIV 268
>sp|Q12063|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1
SV=1
Length = 375
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 40/171 (23%)
Query: 87 QLLQWLVDIGVKHVCLYDAEGILKKS------------------------------KESI 116
+++ W V G+KH+ LYD +GIL+++ I
Sbjct: 181 EIVCWTVSAGIKHLMLYDYDGILQRNVPELRMEIHSNLAKYFGPAHVPNYAVKIPHSNKI 240
Query: 117 LGKLNNATLFEEAG---ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSG 173
L+ + G E+N D I + S DG+E + + +L
Sbjct: 241 FYNLDGIETETDVGNEIEANQEKDKIAIEISLLSNRDGRETIVDLTKTM----AELCAVN 296
Query: 174 KIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTE 224
++ I + SE + VG PEPDLLL +GP GFP W IR TE
Sbjct: 297 ELSVSDITMDLVDSELKQLVG---PEPDLLLYFGPSLDLQGFPPWHIRLTE 344
>sp|Q9Y7K8|UPPS_SCHPO Probable undecaprenyl pyrophosphate synthase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nus1 PE=3 SV=1
Length = 258
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 52 SSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVI----QLLQWLVDIGVKHVCLYDAEG 107
S +++R K +++A++IE E I +I +L W V ++ + +Y+ +G
Sbjct: 45 SRDLIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKG 104
Query: 108 ILKKSKESILGKLNNATLFEEAGESNLL-------LDHKH------ITLEFASFPDGKEA 154
LK+S E++ + + F G+ + D K+ + + + DG++A
Sbjct: 105 FLKQSPEAVEKAIYSHLPFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDA 164
Query: 155 VAK-AANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHL 213
+ L + K+ S ++ E I E S PEPDLL+++ P+
Sbjct: 165 IIDLTRGLADLCTKKVISSTQVTLELIDKELKESVI--------PEPDLLIIFAPLLKLQ 216
Query: 214 GFPAWRIRYTEI 225
GFP W++R EI
Sbjct: 217 GFPPWQLRLCEI 228
>sp|Q8ZJ07|UVRA_YERPE UvrABC system protein A OS=Yersinia pestis GN=uvrA PE=3 SV=1
Length = 947
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
ACQ G +I + +HF D++ H C + Y + + +YK I ++ LA+
Sbjct: 742 ACQ----GDGVIKVEMHFLPDIYVPCDH--CKGKRYNRET-LEVKYKGKSIHEV--LAMT 792
Query: 74 IESEEAYH--IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGE 131
IE + +PA+ + LQ L+D+G+ ++CL + L E+ KL+ G+
Sbjct: 793 IEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTL-SGGEAQRVKLSRELSKRGTGQ 851
Query: 132 SNLLLDHKHITLEFA 146
+ +LD L FA
Sbjct: 852 TLYILDEPTTGLHFA 866
>sp|Q7VLW2|UVRA_HAEDU UvrABC system protein A OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=uvrA PE=3 SV=1
Length = 942
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
ACQ G +I + +HF D++ H C + Y + + RYK I ++ + +
Sbjct: 741 ACQ----GDGVIKVEMHFLPDVYVPCDH--CKGKRYNRET-LEVRYKGKTIHQVLEMTVE 793
Query: 74 IESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESN 133
E IPA+ + LQ L+D+G+ ++ L + L E+ KL + G++
Sbjct: 794 EAREFFDAIPAIARKLQTLIDVGLSYIRLGQSSTTL-SGGEAQRVKLATELSKRDTGKTL 852
Query: 134 LLLDHKHITLEFA 146
+LD L FA
Sbjct: 853 YILDEPTTGLHFA 865
>sp|B2V6B4|SYC_SULSY Cysteine--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=cysS PE=3 SV=1
Length = 487
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 50 LISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109
+IS +K Y D +K R IE HIP +I +Q LVD G + D +
Sbjct: 88 VISDKFIKEY-FDDAEKFRIEPADIEPRVTTHIPDIINFIQKLVDAGYAYEADGDVYFSV 146
Query: 110 KKSKESILGKLNNATLFE 127
+K KE GKL+ ++ E
Sbjct: 147 RKFKE--YGKLSKRSIDE 162
>sp|B8F571|CMOB_HAEPS tRNA (mo5U34)-methyltransferase OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=cmoB PE=3 SV=2
Length = 320
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 77 EEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLL 136
+ Y IP+V L+ WL +G K+V D E + ++ L N TL + L
Sbjct: 245 KNVYFIPSVPALINWLEKVGFKNVRCVD-EAVTTSEEQRKTDWLENETLVD-------FL 296
Query: 137 DHKHITLEFASFPDGKEAVAKAAN 160
D + + +P K AV A N
Sbjct: 297 DPQDHSKTIEGYPAPKRAVIIATN 320
>sp|Q8Z937|FADE_SALTI Acyl-coenzyme A dehydrogenase OS=Salmonella typhi GN=fadE PE=3
SV=1
Length = 814
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 12 SWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
+W +G GLW IWLL+ A+ L F L + +IS+ + + ++
Sbjct: 32 AWTAALGVAGLWSIWLLVPLAIILVPFNL---TPMRKSMISAPVFRGFR 77
>sp|Q8ZRJ7|FADE_SALTY Acyl-coenzyme A dehydrogenase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=fadE PE=2 SV=1
Length = 814
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 12 SWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
+W +G GLW IWLL+ A+ L F L + +IS+ + + ++
Sbjct: 32 AWTAALGVAGLWSIWLLVPLAIILVPFNL---TPMRKSMISAPVFRGFR 77
>sp|O67163|SYC_AQUAE Cysteine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=cysS PE=3
SV=1
Length = 495
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 51 ISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK 110
I+ + RY +D++ +R +E HIP +I+++Q LV+ G +V D +K
Sbjct: 89 IADRYIARY-YVDMENIRVRPADVEPRVTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVK 147
Query: 111 KSKESILGKLNNATLFEE-AGESNLLLDHKHITLEFA 146
K K+ GKL+ + E AG + K L+FA
Sbjct: 148 KFKD--YGKLSKRDIEELIAGARVEPSEKKRDPLDFA 182
>sp|P08964|MYO1_YEAST Myosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MYO1 PE=1 SV=3
Length = 1928
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 101 CLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAAN 160
C AE LKK ++ KL +T EA S+LL H T + K+A++ A
Sbjct: 1598 CSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEK 1657
Query: 161 LLFMKYVKLGGSGKIQEEKIFTEAHMSEALRA 192
L+ KY L + + KI + + + L +
Sbjct: 1658 ELYQKYEALNTECESLKGKIVSLTKIKQELES 1689
>sp|Q8PAV7|UPPS_XANCP Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=uppS PE=3 SV=1
Length = 258
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 129 AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSE 188
AG + + + L A+ G++ +A AA L ++ +G++Q E+I EA +
Sbjct: 123 AGAERITAANTRLVLSIAASYGGRQDIAMAARALAVEVA----AGRLQPEQI-DEALL-- 175
Query: 189 ALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEI 225
A R P PDL + G F W++ YTE+
Sbjct: 176 ASRVALADLPAPDLFIRTGGDTRISNFLLWQLAYTEL 212
>sp|Q87LA0|UVRA_VIBPA UvrABC system protein A OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=uvrA PE=3 SV=1
Length = 940
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 58 RYKALDIDKLRYLAIVIESEEAYH--IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKES 115
RYK ID++ L + +E + +PA+ + LQ L+D+G+ ++ L A L E+
Sbjct: 778 RYKGKTIDEV--LEMTVEDARTFFDPVPAIARKLQTLMDVGLSYIRLGQAATTL-SGGEA 834
Query: 116 ILGKLNNATLFEEAGESNLLLDHKHITLEF 145
KL + G++ +LD L F
Sbjct: 835 QRVKLARELSKRDTGKTLYILDEPTTGLHF 864
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 40 LHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIP--AVIQLLQWLVDIGV 97
L +ACA+E +S IL +D KLR I S H+ A + LL +
Sbjct: 77 LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGV-- 134
Query: 98 KHVCLYDAEGILKKSKESILGKLNNA 123
+ DA+G+ +K + +L+NA
Sbjct: 135 ----IADADGLTPLAKNRAVSELSNA 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,866,387
Number of Sequences: 539616
Number of extensions: 3382436
Number of successful extensions: 10002
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9984
Number of HSP's gapped (non-prelim): 26
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)