Query 027207
Match_columns 226
No_of_seqs 160 out of 1200
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14831 undecaprenyl pyrophos 100.0 1E-40 2.2E-45 289.7 13.8 156 64-226 18-218 (249)
2 PRK14836 undecaprenyl pyrophos 100.0 1.5E-40 3.2E-45 289.1 13.4 156 64-226 12-212 (253)
3 PRK14829 undecaprenyl pyrophos 100.0 2.4E-40 5.3E-45 286.5 14.4 156 64-226 12-212 (243)
4 PRK14830 undecaprenyl pyrophos 100.0 6E-40 1.3E-44 285.1 14.9 156 64-226 20-220 (251)
5 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 4.4E-40 9.5E-45 281.3 13.2 153 67-226 1-198 (221)
6 PRK14834 undecaprenyl pyrophos 100.0 8.3E-40 1.8E-44 283.6 15.0 156 64-226 12-212 (249)
7 PRK14832 undecaprenyl pyrophos 100.0 1.4E-39 3E-44 282.5 14.1 156 64-226 16-216 (253)
8 PRK14840 undecaprenyl pyrophos 100.0 1.9E-39 4.2E-44 281.2 14.8 156 64-226 16-220 (250)
9 TIGR00055 uppS undecaprenyl di 100.0 1.5E-39 3.2E-44 278.3 13.7 152 68-226 1-197 (226)
10 PRK14828 undecaprenyl pyrophos 100.0 1.8E-39 3.9E-44 282.9 14.4 160 64-226 24-226 (256)
11 PRK14827 undecaprenyl pyrophos 100.0 1.8E-39 3.9E-44 286.9 14.3 155 65-226 66-265 (296)
12 PRK14838 undecaprenyl pyrophos 100.0 3.1E-39 6.8E-44 279.0 14.0 155 65-226 9-206 (242)
13 PRK14835 undecaprenyl pyrophos 100.0 4.3E-39 9.4E-44 282.5 14.7 160 64-226 39-245 (275)
14 PRK14842 undecaprenyl pyrophos 100.0 5E-39 1.1E-43 277.4 14.3 155 65-226 7-207 (241)
15 PRK14837 undecaprenyl pyrophos 100.0 6.6E-39 1.4E-43 274.6 13.3 152 64-226 4-200 (230)
16 PRK14841 undecaprenyl pyrophos 100.0 1E-38 2.2E-43 274.6 14.1 153 65-226 2-199 (233)
17 COG0020 UppS Undecaprenyl pyro 100.0 2.3E-38 5E-43 273.9 14.3 155 65-226 15-214 (245)
18 PRK14833 undecaprenyl pyrophos 100.0 2.1E-37 4.6E-42 266.4 13.8 154 65-226 3-201 (233)
19 PRK14839 undecaprenyl pyrophos 100.0 5.2E-37 1.1E-41 263.9 12.9 150 61-226 4-198 (239)
20 PTZ00349 dehydrodolichyl dipho 100.0 4E-36 8.6E-41 266.9 13.6 161 64-226 17-283 (322)
21 PRK10240 undecaprenyl pyrophos 100.0 4.6E-35 1E-39 251.4 12.4 139 81-226 22-191 (229)
22 PF01255 Prenyltransf: Putativ 100.0 1.7E-34 3.7E-39 247.7 10.5 146 73-226 1-193 (223)
23 KOG1602 Cis-prenyltransferase 100.0 2.9E-32 6.2E-37 233.7 13.3 155 64-226 34-236 (271)
24 KOG2818 Predicted undecaprenyl 99.9 2.6E-27 5.7E-32 203.6 14.3 204 14-226 5-234 (263)
25 PF07736 CM_1: Chorismate muta 79.4 3.2 7E-05 32.4 4.1 31 147-177 10-40 (118)
26 TIGR01796 CM_mono_aroH monofun 73.4 4 8.6E-05 31.8 3.1 31 147-177 10-40 (117)
27 cd02185 AroH Chorismate mutase 73.3 4 8.7E-05 31.8 3.1 31 147-177 10-40 (117)
28 TIGR02803 ExbD_1 TonB system t 53.3 51 0.0011 25.1 6.0 31 72-102 88-118 (122)
29 PF00763 THF_DHG_CYH: Tetrahyd 52.2 36 0.00079 26.0 5.0 38 65-102 27-64 (117)
30 smart00549 TAFH TAF homology. 48.6 17 0.00036 27.1 2.4 45 149-203 18-62 (92)
31 TIGR02804 ExbD_2 TonB system t 44.5 53 0.0011 25.1 4.8 31 72-102 87-117 (121)
32 cd00954 NAL N-Acetylneuraminic 42.6 2E+02 0.0044 25.2 8.9 34 78-111 16-50 (288)
33 COG4401 AroH Chorismate mutase 41.7 39 0.00084 26.3 3.5 30 148-177 13-42 (125)
34 COG4792 EscU Type III secretor 39.6 3E+02 0.0066 25.2 11.2 36 65-100 262-307 (349)
35 PRK14178 bifunctional 5,10-met 36.6 2.3E+02 0.0051 25.3 8.3 41 65-106 24-64 (279)
36 PRK09482 flap endonuclease-lik 34.8 1.7E+02 0.0038 25.7 7.1 37 66-102 46-103 (256)
37 PRK11024 colicin uptake protei 34.5 1.1E+02 0.0025 23.9 5.5 32 71-102 105-136 (141)
38 PHA02679 ORF091 IMV membrane p 32.2 38 0.00082 22.6 1.9 16 20-35 37-52 (53)
39 TIGR02801 tolR TolR protein. T 32.1 1E+02 0.0023 23.5 4.8 31 72-102 96-126 (129)
40 PHA03047 IMV membrane receptor 31.4 39 0.00084 22.6 1.8 16 20-35 37-52 (53)
41 COG2949 SanA Uncharacterized m 31.3 3.5E+02 0.0076 23.5 8.2 11 65-75 53-64 (235)
42 cd05014 SIS_Kpsf KpsF-like pro 30.6 1.2E+02 0.0025 22.6 4.8 39 66-106 46-84 (128)
43 PRK13743 conjugal transfer pro 30.6 1.2E+02 0.0025 24.2 4.7 29 24-53 53-91 (141)
44 PRK14184 bifunctional 5,10-met 30.1 2.7E+02 0.0058 25.0 7.6 41 66-107 30-70 (286)
45 PRK14181 bifunctional 5,10-met 29.8 2.9E+02 0.0063 24.8 7.8 62 55-121 16-77 (287)
46 PRK14179 bifunctional 5,10-met 28.7 3.3E+02 0.0071 24.4 7.9 42 66-108 31-72 (284)
47 PRK11267 biopolymer transport 28.6 1.9E+02 0.0041 22.7 5.8 22 81-102 111-132 (141)
48 PRK14194 bifunctional 5,10-met 28.4 3.2E+02 0.007 24.7 7.8 40 66-106 32-71 (301)
49 PRK14189 bifunctional 5,10-met 28.4 3.5E+02 0.0077 24.2 8.1 41 66-107 31-71 (285)
50 PRK14192 bifunctional 5,10-met 28.2 3.1E+02 0.0067 24.4 7.7 36 66-101 32-67 (283)
51 PHA02724 hydrophobic IMV membr 28.0 52 0.0011 21.9 2.0 16 20-35 37-52 (53)
52 PRK14174 bifunctional 5,10-met 27.9 3E+02 0.0065 24.8 7.5 53 66-121 30-82 (295)
53 PRK14187 bifunctional 5,10-met 27.0 3.6E+02 0.0079 24.3 7.9 41 66-107 31-71 (294)
54 cd00003 PNPsynthase Pyridoxine 26.4 1.2E+02 0.0026 26.5 4.5 39 66-105 83-131 (234)
55 PF06269 DUF1029: Protein of u 26.3 59 0.0013 21.7 2.0 16 20-35 37-52 (53)
56 COG4799 Acetyl-CoA carboxylase 26.0 73 0.0016 31.1 3.4 45 67-114 333-377 (526)
57 PRK14176 bifunctional 5,10-met 26.0 4.7E+02 0.01 23.4 8.4 40 66-106 37-76 (287)
58 PRK14173 bifunctional 5,10-met 25.9 3.8E+02 0.0081 24.1 7.8 53 65-121 28-80 (287)
59 COG0320 LipA Lipoate synthase 25.6 2.4E+02 0.0052 25.5 6.3 66 32-103 183-248 (306)
60 PRK14171 bifunctional 5,10-met 25.5 4.2E+02 0.0092 23.8 8.0 52 66-121 32-83 (288)
61 PF13305 WHG: WHG domain; PDB: 24.4 1E+02 0.0023 20.7 3.3 19 19-37 59-77 (81)
62 cd05006 SIS_GmhA Phosphoheptos 24.3 1.6E+02 0.0035 23.6 4.8 39 66-106 100-138 (177)
63 cd01477 vWA_F09G8-8_type VWA F 24.1 1.2E+02 0.0026 25.2 4.0 39 65-103 130-168 (193)
64 PRK04239 hypothetical protein; 23.8 2E+02 0.0044 22.1 4.9 45 151-200 61-105 (110)
65 PRK14180 bifunctional 5,10-met 23.8 4.1E+02 0.0089 23.8 7.6 41 66-107 30-70 (282)
66 PLN03044 GTP cyclohydrolase I; 23.7 93 0.002 26.2 3.3 28 68-95 87-114 (188)
67 PF02472 ExbD: Biopolymer tran 23.5 2E+02 0.0043 21.5 4.9 32 69-102 94-125 (130)
68 TIGR00513 accA acetyl-CoA carb 23.4 94 0.002 28.3 3.5 29 81-109 136-164 (316)
69 PRK12319 acetyl-CoA carboxylas 23.4 97 0.0021 27.3 3.5 29 81-109 83-111 (256)
70 PRK14188 bifunctional 5,10-met 23.0 4.5E+02 0.0098 23.6 7.8 42 66-108 31-72 (296)
71 PRK14191 bifunctional 5,10-met 23.0 4.7E+02 0.01 23.4 7.8 41 66-107 30-70 (285)
72 TIGR01568 A_thal_3678 uncharac 22.6 53 0.0012 23.0 1.4 32 2-39 13-44 (66)
73 PRK14175 bifunctional 5,10-met 22.6 4.2E+02 0.0091 23.7 7.4 52 66-120 31-82 (286)
74 PF13302 Acetyltransf_3: Acety 22.0 2E+02 0.0042 21.2 4.6 41 69-109 86-130 (142)
75 TIGR00683 nanA N-acetylneurami 21.9 5.5E+02 0.012 22.6 9.3 33 77-109 15-48 (290)
76 PRK03170 dihydrodipicolinate s 21.7 4.8E+02 0.01 22.7 7.6 35 77-111 16-50 (292)
77 PRK14185 bifunctional 5,10-met 21.5 3.9E+02 0.0085 24.0 7.0 53 66-121 30-82 (293)
78 PRK14169 bifunctional 5,10-met 21.4 5.5E+02 0.012 23.0 7.9 41 66-107 29-69 (282)
79 PF01206 TusA: Sulfurtransfera 21.3 1.6E+02 0.0035 19.7 3.6 36 69-109 29-64 (70)
80 PF02739 5_3_exonuc_N: 5'-3' e 21.0 1.1E+02 0.0024 25.0 3.2 37 66-102 50-105 (169)
81 PF05508 Ran-binding: RanGTP-b 20.8 1.1E+02 0.0023 27.8 3.2 68 149-218 87-158 (302)
82 PRK14168 bifunctional 5,10-met 20.4 4.5E+02 0.0098 23.7 7.2 53 66-121 32-84 (297)
83 cd08351 ChaP_like ChaP, an enz 20.3 1.8E+02 0.0039 21.3 4.1 26 68-99 60-85 (123)
No 1
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1e-40 Score=289.67 Aligned_cols=156 Identities=16% Similarity=0.247 Sum_probs=129.6
Q ss_pred CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
..+|+|||||||||++ | |++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.
T Consensus 18 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~ 97 (249)
T PRK14831 18 QRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLR 97 (249)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 1 89999999999999999999999998 9999998753 32221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. .....|+++++++|++|.+||||+||++|++++++++ +.|++++++|+
T Consensus 98 ~~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v-~~g~l~~~~i~ 176 (249)
T PRK14831 98 RELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQV-QQGELDPSEID 176 (249)
T ss_pred HHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence 1 11 13321 1235688999999999999999999999999998876 77888888776
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++.++++|+ +.++|||||+|||||+.|||||||||++|||||
T Consensus 177 ----e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~ 218 (249)
T PRK14831 177 ----ENLFESELY--TAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIY 218 (249)
T ss_pred ----HHHHHHhhc--cCCCCCCCEEEeCCCCccccCchhhhhhceeEE
Confidence 555667776 678999999999999999999999999999985
No 2
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-40 Score=289.09 Aligned_cols=156 Identities=18% Similarity=0.257 Sum_probs=129.5
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh---
Q 027207 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN--- 122 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~--- 122 (226)
.++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +|+|+..+++ |+.+..
T Consensus 12 ~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~ 91 (253)
T PRK14836 12 ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALD 91 (253)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999964 189999999999999999999999997 8999998764 332211
Q ss_pred -------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
.+ .+|.. .....|+++++++|+++.+||||+||++|+|++++++ +.|++++++|+
T Consensus 92 ~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~-~~g~l~~~~i~ 170 (253)
T PRK14836 92 REVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREV-AAGKLAPDEID 170 (253)
T ss_pred HHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChHhCC
Confidence 11 23321 1335688999999999999999999999999998775 77888888776
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++.+.+.|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 171 ----e~~i~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEly 212 (253)
T PRK14836 171 ----EALLAQHLA--LADLPEPDLFIRTSGELRISNFLLWQLAYTELY 212 (253)
T ss_pred ----HHHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHHHhheEEE
Confidence 555666766 678999999999999999999999999999986
No 3
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.4e-40 Score=286.52 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=128.7
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l~---- 121 (226)
..+|+|||||||||++ + |++++.+++.||.+.||++||+|+| ++|+||+.+++ |+.+.
T Consensus 12 ~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~ 91 (243)
T PRK14829 12 NKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIH 91 (243)
T ss_pred CCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 1 8999999999999999999999999 59999998753 32221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
. .. .+|.. ..+..|+++++++|+++.+||||+||++|++++++++ +.|.+++++|+
T Consensus 92 ~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~g~~~~~~i~ 170 (243)
T PRK14829 92 RRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREV-RDGKISGDRVT 170 (243)
T ss_pred HHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence 1 11 23321 1234688999999999999999999999999998775 77888888776
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++.+.+.|+ +++.|||||+|||||+.|||||||||++|||||
T Consensus 171 ----e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~ 212 (243)
T PRK14829 171 ----EKMISDHLY--NPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELD 212 (243)
T ss_pred ----HHHHHHHhc--cCCCCCCCEEEEcCCcccccCchHHhHhheEEE
Confidence 555666776 578999999999999999999999999999985
No 4
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6e-40 Score=285.14 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=128.8
Q ss_pred CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
.++|+|||||||||++ | |++++.+++.||.+.||++||+|+|| +|+|++.+++ ++.+.
T Consensus 20 ~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~ 99 (251)
T PRK14830 20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99 (251)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 1 89999999999999999999999997 8999998753 32221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. .....|+++++++||++.+||||+||++|++++++++ +.|.+++++|+
T Consensus 100 ~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v-~~g~l~~~~I~ 178 (251)
T PRK14830 100 KFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDV-LDGKLNPEDIT 178 (251)
T ss_pred HHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence 1 11 12321 1335688999999999999999999999999998876 77888888776
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++.+++.|+ +.+.|||||+|||||+.|||||||||++|||||
T Consensus 179 ----e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~ 220 (251)
T PRK14830 179 ----EELISNYLM--TKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFY 220 (251)
T ss_pred ----HHHHHHHhC--cCCCCCCCEEEeCCCCCcccCChHHHHcceEEE
Confidence 455666666 568999999999999999999999999999985
No 5
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=4.4e-40 Score=281.34 Aligned_cols=153 Identities=22% Similarity=0.354 Sum_probs=126.3
Q ss_pred CCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h--
Q 027207 67 LRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N-- 122 (226)
Q Consensus 67 P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~-- 122 (226)
|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ |+.+. +
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999974 1 89999999999999999999999997 8999998763 32221 1
Q ss_pred ----cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhh
Q 027207 123 ----AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (226)
Q Consensus 123 ----~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l 181 (226)
.+ .+|.. .....|+++++++|+++++||||+||++|+|++++++ +.|++++++|+
T Consensus 81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~-~~~~~~~~~i~--- 156 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKV-KAGKLTPEDID--- 156 (221)
T ss_pred HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC---
Confidence 11 23331 1335688899999999999999999999999998775 77888888776
Q ss_pred hHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 182 ~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++.+.+.|+ +.+.|||||+|||||+.|||||||||++||||+
T Consensus 157 -~~~~~~~L~--~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~ 198 (221)
T cd00475 157 -ESTLNKHLY--THDSPDPDLLIRTSGEQRLSNFLLWQSAYSELY 198 (221)
T ss_pred -HHHHHHhhC--cCCCCCCCEEEecCCccccccchHhhHhheeEE
Confidence 455666666 567899999999999999999999999999985
No 6
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.3e-40 Score=283.65 Aligned_cols=156 Identities=17% Similarity=0.272 Sum_probs=128.6
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
..+|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +|+||+.+++ |+.+.
T Consensus 12 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~ 91 (249)
T PRK14834 12 MSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIR 91 (249)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999973 189999999999999999999999986 8999998753 33221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. ..+..|+++++++|+++.+||||+||++|+|++++++ +.|++++++|+
T Consensus 92 ~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~-~~g~~~~~dI~ 170 (249)
T PRK14834 92 RDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREV-AEGRLDPASID 170 (249)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhhCC
Confidence 1 11 12321 1335688999999999999999999999999998775 77888888877
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+ +.+.+.|+ +...|||||+|||||+.|||||||||++|||||
T Consensus 171 e----~~i~~~L~--~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaEly 212 (249)
T PRK14834 171 A----ETISANLD--TADIPDPDLIIRTSGEQRLSNFLLWQAAYSELL 212 (249)
T ss_pred H----HHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHhHhheEEE
Confidence 4 55556665 568899999999999999999999999999986
No 7
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.4e-39 Score=282.48 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=128.8
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
..+|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.
T Consensus 16 ~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 95 (253)
T PRK14832 16 QKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLR 95 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 1 89999999999999999999999997 8999998763 32221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. ..+..|+++++++||+|.+||||+||++|+|++++++ +.|.+++++|+
T Consensus 96 ~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v-~~g~~~~~~i~ 174 (253)
T PRK14832 96 RELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELV-QQGKLSADAVN 174 (253)
T ss_pred HHHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC
Confidence 1 11 23321 1335688999999999999999999999999998775 67788888776
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+.++|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 175 ----e~~i~~~L~--~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaEly 216 (253)
T PRK14832 175 ----EQLVEQHLY--TADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMY 216 (253)
T ss_pred ----HHHHHHhhC--cCCCCCCCEEEECCCcccccCcHHHHHhheEEE
Confidence 455666776 678999999999999999999999999999985
No 8
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.9e-39 Score=281.16 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=128.5
Q ss_pred CCCCCeEEEEeeCCCC-----C-------------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh
Q 027207 64 IDKLRYLAIVIESEEA-----Y-------------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~-------------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~ 121 (226)
..+|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ |+.+.
T Consensus 16 ~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~ 95 (250)
T PRK14840 16 QSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFN 95 (250)
T ss_pred CCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 4789999999999952 1 79999999999999999999999997 8999998764 32221
Q ss_pred h----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 027207 122 N----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK 174 (226)
Q Consensus 122 ~----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~ 174 (226)
+ .+ .+|.. ..+..|+++++++|++|.+||||+||++|++++++++ +.|++++
T Consensus 96 ~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~~~~~~ 174 (250)
T PRK14840 96 SQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDL-ANKKISS 174 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHH-HhCCCCh
Confidence 1 11 23321 1335689999999999999999999999999998876 7788888
Q ss_pred cchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 175 ~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+++++ +.+.+.|+ +.++|||||+|||||+.|||||||||++|||||
T Consensus 175 ~~i~~----~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~ 220 (250)
T PRK14840 175 DDISE----ELISSYLD--TSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELY 220 (250)
T ss_pred hhCCH----HHHHHHhc--cCCCCCCCEEEeCCCCcccccchHHhHhceeEE
Confidence 87764 55566665 568999999999999999999999999999985
No 9
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=1.5e-39 Score=278.31 Aligned_cols=152 Identities=20% Similarity=0.307 Sum_probs=126.8
Q ss_pred CeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h---
Q 027207 68 RYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N--- 122 (226)
Q Consensus 68 ~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~--- 122 (226)
+|||||||||++ | |++.+.+++.||.+.||++||+|+|| +|+||+.+++ |+.+. +
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 699999999974 1 89999999999999999999999997 8999998763 33221 1
Q ss_pred ---cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhh
Q 027207 123 ---AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT 182 (226)
Q Consensus 123 ---~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~ 182 (226)
.+ .+|.. .....|+++++++|+++.+||||+||++|+|++++++ ++|++++++|+
T Consensus 81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~i~---- 155 (226)
T TIGR00055 81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKV-KSGKLLPEDID---- 155 (226)
T ss_pred HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC----
Confidence 11 23331 1334688999999999999999999999999998876 77888888766
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 183 EAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 183 e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 156 e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~ 197 (226)
T TIGR00055 156 EETLNKHLY--TANLPPVDLLIRTSGEMRISNFLLWQSSYAELY 197 (226)
T ss_pred HHHHHHhhc--cCCCCCCCEEEeCCCcccccCcHHHHHhceEEE
Confidence 566777776 678999999999999999999999999999985
No 10
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.8e-39 Score=282.89 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=133.5
Q ss_pred CCCCCeEEEEeeCCCC---------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh---
Q 027207 64 IDKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN--- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~---------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~--- 121 (226)
.++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +|++++.+++ ++.+.
T Consensus 24 ~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l 103 (256)
T PRK14828 24 AQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVV 103 (256)
T ss_pred CCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHH
Confidence 3689999999999952 178999999999999999999999996 8999998753 32221
Q ss_pred -h---cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhh
Q 027207 122 -N---AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (226)
Q Consensus 122 -~---~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~ 180 (226)
+ .+ .+|.. ..+..|+++++++|+++.+||||+||++|++++++++ +.|++++++++++
T Consensus 104 ~~~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~~~~ 182 (256)
T PRK14828 104 RQLAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEH-KDKGTSIDELAES 182 (256)
T ss_pred HHHHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhcccc
Confidence 1 11 12321 1335688999999999999999999999999998886 5677888877767
Q ss_pred hhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 181 l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++++.+.++|+ +++.|||||+|||||+.|||||||||++|||||
T Consensus 183 i~e~~i~~~L~--~~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaEly 226 (256)
T PRK14828 183 VTVDAISTHLY--TGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYY 226 (256)
T ss_pred CCHHHHHHHhc--cCCCCCCCEEEeCCCCCcccCChHHHhhheEEE
Confidence 78888999987 678899999999999999999999999999986
No 11
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.8e-39 Score=286.91 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=128.7
Q ss_pred CCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHh----hh
Q 027207 65 DKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKL----NN 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l----~~ 122 (226)
.+|+|||||||||++ + |++++.+++.||.++||++||+|+| ++|+|++.+++ |+.+ ..
T Consensus 66 ~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~ 145 (296)
T PRK14827 66 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 145 (296)
T ss_pred CCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHH
Confidence 679999999999974 1 8999999999999999999999999 59999998863 3221 11
Q ss_pred ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207 123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (226)
Q Consensus 123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~ 179 (226)
.. .+|.. ..+..|+++++++||++.+||||+||++|++++++++ +.|++++++|+
T Consensus 146 ~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v-~~g~l~~~~I~- 223 (296)
T PRK14827 146 RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREA-AAGRLNPERIT- 223 (296)
T ss_pred HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhhcc-
Confidence 11 12221 1234589999999999999999999999999998876 77888888776
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+.++|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 224 ---e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~ 265 (296)
T PRK14827 224 ---ESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYI 265 (296)
T ss_pred ---HHHHHHHhc--cCCCCCCCEEEecCCcccccCchHhhhhheEEE
Confidence 566777776 578999999999999999999999999999985
No 12
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.1e-39 Score=279.01 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=129.1
Q ss_pred CCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207 65 DKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN---- 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~---- 122 (226)
++|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.+
T Consensus 9 ~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~ 88 (242)
T PRK14838 9 RIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEE 88 (242)
T ss_pred CCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999974 1 89999999999999999999999997 8999998763 333221
Q ss_pred ----cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhh
Q 027207 123 ----AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (226)
Q Consensus 123 ----~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l 181 (226)
.. .+|.. .....|+++++++||++.+||||+||++|+|++++++ +.|++++++|+
T Consensus 89 ~~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~i~--- 164 (242)
T PRK14838 89 ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLV-QNGELNPEEIT--- 164 (242)
T ss_pred HHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC---
Confidence 11 23331 1235688999999999999999999999999998876 77888888776
Q ss_pred hHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 182 ~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+.+.|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 165 -e~~~~~~L~--~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~ 206 (242)
T PRK14838 165 -EESISEHLT--TNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELY 206 (242)
T ss_pred -HHHHHHHhc--cCCCCCCCEEEeCCCCccccCchHHHhcceeEE
Confidence 556666666 678999999999999999999999999999985
No 13
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.3e-39 Score=282.55 Aligned_cols=160 Identities=18% Similarity=0.324 Sum_probs=134.7
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHh----h
Q 027207 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKL----N 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l----~ 121 (226)
..+|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +|+||+.++ |++.+ .
T Consensus 39 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 118 (275)
T PRK14835 39 GKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR 118 (275)
T ss_pred CCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 189999999999999999999999997 899999775 33222 1
Q ss_pred h--------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccc
Q 027207 122 N--------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (226)
Q Consensus 122 ~--------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~d 176 (226)
+ .+ .+|.. .....|+++++++||++.+||||+||++|++++++++ +.|++++++
T Consensus 119 ~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~-~~g~~~~~~ 197 (275)
T PRK14835 119 RMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEA-AATGKSPEE 197 (275)
T ss_pred HHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChHH
Confidence 1 01 12221 1234688999999999999999999999999998776 778889988
Q ss_pred hhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 177 EEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 177 i~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+++|+.+.++|+ +.+.|||||+|||||+.|||||||||++|||||
T Consensus 198 i~~~~~e~~i~~~L~--~~~~p~pDLLIRTsGE~RLSnFLLWQsayaEly 245 (275)
T PRK14835 198 VAAELTPEHISAHLY--TAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYY 245 (275)
T ss_pred hcccCCHHHHHHHhc--cCCCCCCCEEEecCCCccccCCHHHhhhheEEE
Confidence 877788999999998 678899999999999999999999999999986
No 14
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5e-39 Score=277.41 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=127.4
Q ss_pred CCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207 65 DKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN---- 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~---- 122 (226)
.+|+|||||||||++ | |++++.+++.||.+.||++||+|+|| +|+||+.+++ |+.+.+
T Consensus 7 ~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~ 86 (241)
T PRK14842 7 TIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIET 86 (241)
T ss_pred CCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999974 1 89999999999999999999999997 8999998763 322211
Q ss_pred ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc-chh
Q 027207 123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI-QEE 178 (226)
Q Consensus 123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~-di~ 178 (226)
.. .+|+. .....|+++++++||+|.+||||+||++|++++++++ +.|+.+++ +++
T Consensus 87 ~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~i~ 165 (241)
T PRK14842 87 RLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLAR-KAKKVTLEKPLK 165 (241)
T ss_pred HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCccccCC
Confidence 11 23331 1335688999999999999999999999999998886 55666654 444
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+.++|+ +.+.|||||+|||||+.|||||||||++|||||
T Consensus 166 ----e~~~~~~L~--t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~ 207 (241)
T PRK14842 166 ----EKEFEKFLY--TSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELY 207 (241)
T ss_pred ----HHHHHHHhC--cCCCCCCCEEEECCCcccccCCHHHHHhceEEE
Confidence 677888887 678999999999999999999999999999985
No 15
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.6e-39 Score=274.62 Aligned_cols=152 Identities=17% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
.++|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ |+.+.
T Consensus 4 ~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 83 (230)
T PRK14837 4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS 83 (230)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999963 1 89999999999999999999999997 8999998753 33221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. .....|+++++++|+++.+||||+||++|+|++++ +++++++|+
T Consensus 84 ~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~-----~~~~~~~i~ 158 (230)
T PRK14837 84 SEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS-----SGLDLETLN 158 (230)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh-----cCCChhhCC
Confidence 1 11 23321 13346889999999999999999999999999862 356676655
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.+.++|+ ++++|||||+|||||+.|||||||||++|||||
T Consensus 159 ----e~~~~~~L~--~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaEly 200 (230)
T PRK14837 159 ----ENVFSKFLD--NPELPDLDLLIRTGGDMRISNFLLWRIAYCEFI 200 (230)
T ss_pred ----HHHHHHhhc--cCCCCCCCEEEECCCcccccccHHHhhhheEEE
Confidence 667777777 678999999999999999999999999999985
No 16
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1e-38 Score=274.63 Aligned_cols=153 Identities=18% Similarity=0.269 Sum_probs=124.3
Q ss_pred CCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207 65 DKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN---- 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~---- 122 (226)
++|+|||||||||++ | |.+++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.+
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 81 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999974 1 89999999999999999999999997 8999998764 322211
Q ss_pred ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207 123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (226)
Q Consensus 123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~ 179 (226)
.. .+|.. ..+..|+++++++|++|.+||||+||++|++++++++ +.|+. +++
T Consensus 82 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~--~~i-- 156 (233)
T PRK14841 82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDV-SQGKK--IEL-- 156 (233)
T ss_pred HHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCc--CCC--
Confidence 11 23331 1335688999999999999999999999999998876 34432 333
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+|+.+.+.|+ +++.|||||+|||||+.|||||||||++|||||
T Consensus 157 --~~~~~~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEly 199 (233)
T PRK14841 157 --TEETFRQYLY--LPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELY 199 (233)
T ss_pred --CHHHHHHHhc--cCCCCCCCEEEeCCCCccccCcHHHHhhceeEE
Confidence 4666777777 678999999999999999999999999999985
No 17
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=2.3e-38 Score=273.90 Aligned_cols=155 Identities=20% Similarity=0.332 Sum_probs=127.3
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h
Q 027207 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~ 122 (226)
.+|+|||+|||||.+ .|.+.+.+++.||.+.||++||+|+|| +|+|++.+++ +..+. .
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999963 189999999999999999999999996 7889887753 32211 1
Q ss_pred ------cC-----------CCCc-h-----hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207 123 ------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (226)
Q Consensus 123 ------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~ 179 (226)
.+ .+|. . .++..|+++++++++++.+||||++|++|+|++++++ +.|++++++||+
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v-~~g~l~~~~I~e 173 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDV-AAGKLSPEDIDE 173 (245)
T ss_pred HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHH-HcCCCChHHcCH
Confidence 11 1222 1 1345688999999999999999999999999997775 888999998775
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++ ++++|+ +.+.|||||+|||||+.|+|||||||++|||+|
T Consensus 174 ~~----i~~~L~--~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsEly 214 (245)
T COG0020 174 EL----ISSHLY--TSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELY 214 (245)
T ss_pred HH----HHHhhc--ccCCCCCCEEEeCCCcccccccHHHHHHhCeEE
Confidence 55 555555 468999999999999999999999999999986
No 18
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.1e-37 Score=266.43 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=122.7
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN---- 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~---- 122 (226)
++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.+
T Consensus 3 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 82 (233)
T PRK14833 3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKD 82 (233)
T ss_pred CCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHH
Confidence 589999999999974 189999999999999999999999997 8999998763 322211
Q ss_pred ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207 123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (226)
Q Consensus 123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~ 179 (226)
.+ .+|.. ..+..|+++++++|+++.+||||+||++|++++++++ +.. ..+.+
T Consensus 83 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~~-~~~~~--- 157 (233)
T PRK14833 83 ERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESP-PSH-IGELE--- 157 (233)
T ss_pred HHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHh-hcc-cCccc---
Confidence 11 13321 1334688999999999999999999999999998764 111 11223
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+.++.+.+.|+ +++.|||||+|||||+.|||||||||++|||||
T Consensus 158 -i~e~~l~~~L~--~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEly 201 (233)
T PRK14833 158 -SLEEEISNCLD--TADLPEVDLLIRTGGEMRLSNFLLWQSSYAELF 201 (233)
T ss_pred -CCHHHHHHHhc--cCCCCCCCEEEECCCCccccccHHHHHhceeEE
Confidence 44667777776 678999999999999999999999999999985
No 19
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.2e-37 Score=263.88 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=121.3
Q ss_pred hcCCCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh
Q 027207 61 ALDIDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN 122 (226)
Q Consensus 61 ~~~~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~ 122 (226)
.+|.+-|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.+
T Consensus 4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~ 83 (239)
T PRK14839 4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA 83 (239)
T ss_pred ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence 3566789999999999974 1 89999999999999999999999997 8999998863 332211
Q ss_pred ----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207 123 ----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (226)
Q Consensus 123 ----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~ 175 (226)
.+ .+|.. ..+..|+++++++||++.+||||+||++|+++++ .++
T Consensus 84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~---------~~~ 154 (239)
T PRK14839 84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL---------GPE 154 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc---------Ccc
Confidence 11 13331 1335688999999999999999999999999863 245
Q ss_pred chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+|| ++.+.++|+ +.+|||||+|||||+.|||||||||++|||||
T Consensus 155 ~i~----e~~~~~~l~---~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~ 198 (239)
T PRK14839 155 GLS----REAFSDLLT---GDGGDVDLLIRTGGEKRLSDFLLWESAYAELH 198 (239)
T ss_pred cCC----HHHHHHHhc---cCCCCCCEEEeCCCccccccchhhhhhheEEE
Confidence 555 566777765 47899999999999999999999999999985
No 20
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=4e-36 Score=266.87 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=125.8
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHh-----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKL----- 120 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l----- 120 (226)
.++|+|||||||||++ + |++.+.+++.||.+.||++||+|+|| +|+||+.+++ |+.+
T Consensus 17 g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~ 96 (322)
T PTZ00349 17 FINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILI 96 (322)
T ss_pred CCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999974 1 89999999999999999999999997 8999998763 3221
Q ss_pred ------h--hcC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHH----------HHHHHHHHH
Q 027207 121 ------N--NAT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMK 165 (226)
Q Consensus 121 ------~--~~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv----------~a~r~l~~e 165 (226)
+ +.+ .+|.. .....|+++++++++++.+||||+||+ +|+|+++++
T Consensus 97 ~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~ 176 (322)
T PTZ00349 97 NEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEE 176 (322)
T ss_pred HhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHH
Confidence 1 011 12321 134568999999999999999999999 799999776
Q ss_pred H------------HHcCCCCcc----------------------------------chhh-hhhHHHHHHHHHhcCCCCC
Q 027207 166 Y------------VKLGGSGKI----------------------------------QEEK-IFTEAHMSEALRAVGCKGP 198 (226)
Q Consensus 166 ~------------~~~~~~~~~----------------------------------di~~-~l~e~~l~~~L~~~~~~~p 198 (226)
+ .+.|++++. ++++ .++++.+.++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~~Ly--t~~~P 254 (322)
T PTZ00349 177 KKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHKKLL--TSDLP 254 (322)
T ss_pred hccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHHhcc--CCCCC
Confidence 3 234443311 1222 244556999998 78999
Q ss_pred CCcEEEEeCCCcccCCCchhhh-hhcccC
Q 027207 199 EPDLLLVYGPVRCHLGFPAWRI-RYTEIV 226 (226)
Q Consensus 199 ePDLlI~~G~~~rLsgF~pWqi-ryTEi~ 226 (226)
||||+|||||+.||||||+||+ +|||||
T Consensus 255 dpDLlIRTSGE~RLSNFLLWQ~aaysEly 283 (322)
T PTZ00349 255 PPNILIRTSGEKRLSDFMLYQISEFTEIY 283 (322)
T ss_pred CCCEEEECCCcccccccHHhhcccceEEE
Confidence 9999999999999999999999 699986
No 21
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.6e-35 Score=251.37 Aligned_cols=139 Identities=15% Similarity=0.211 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----------cC-----------CCCch------
Q 027207 81 HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----------AT-----------LFEEA------ 129 (226)
Q Consensus 81 ~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----------~~-----------~~~~~------ 129 (226)
|++++.+++.||.+.||++||+|+|| +|+||+.+++ ++.+.+ .+ .+|..
T Consensus 22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~~l~~~i~ 101 (229)
T PRK10240 22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIR 101 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCHHHHHHHH
Confidence 89999999999999999999999997 8999998753 332221 11 23331
Q ss_pred hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 027207 130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPV 209 (226)
Q Consensus 130 ~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~ 209 (226)
.....|+++++++||++++||||+||++|+|++++++ +.|++++++|++ +.+.+.|+ ++++|||||+|||||+
T Consensus 102 ~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~g~~~~~~i~e----~~i~~~L~--t~~~pdpDLlIRTsGe 174 (229)
T PRK10240 102 KSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQV-QQGNLQPDQIDE----EMLNQHIC--MHELAPVDLVIRTGGE 174 (229)
T ss_pred HHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhhCCH----HHHHHHhc--cCCCCCCCEEEeCCCc
Confidence 1234588999999999999999999999999998776 778888888775 44555555 5689999999999999
Q ss_pred cccCCCchhhhhhcccC
Q 027207 210 RCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 210 ~rLsgF~pWqiryTEi~ 226 (226)
.|||||||||++|||||
T Consensus 175 ~RLSnFLlWQ~ayaEly 191 (229)
T PRK10240 175 HRISNFLLWQIAYAELY 191 (229)
T ss_pred ccccCChHHHHhheEEE
Confidence 99999999999999985
No 22
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=1.7e-34 Score=247.72 Aligned_cols=146 Identities=20% Similarity=0.335 Sum_probs=107.7
Q ss_pred EeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh------------
Q 027207 73 VIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN------------ 122 (226)
Q Consensus 73 I~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~------------ 122 (226)
|||||++ + |++++.+++.||.+.||++||+|+|| +|++|+.+++ |+.+.+
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~ 80 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH 80 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 7999963 1 89999999999999999999999997 8999998763 432211
Q ss_pred cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHH
Q 027207 123 AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAH 185 (226)
Q Consensus 123 ~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~ 185 (226)
++ .+|.. .....|+++++++++++++||||+||++|++++++++ ++|+++++||+ ++.
T Consensus 81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~-~~~~~~~~~i~----~~~ 155 (223)
T PF01255_consen 81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEV-QSGKLSPEDID----EEL 155 (223)
T ss_dssp HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHH-HTTSSGGGG-S----HHH
T ss_pred hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhh-ccCccccccCC----HHH
Confidence 11 12321 1234578899999999999999999999999998876 78889998876 556
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 186 MSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 186 l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++++|+ ++..| |||+|||||+.|||||||||++||||+
T Consensus 156 i~~~L~--~~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~ 193 (223)
T PF01255_consen 156 ISSHLY--TPDLP-PDLLIRTSGEQRLSNFLLWQSAYAELY 193 (223)
T ss_dssp HHHTST--TTTS---SEEEEETT--C-TTSSTTTTTT-EEE
T ss_pred HHhhcc--ccCCC-CCEEEEeCCCcccCCCeEEeecCcEEE
Confidence 677776 56677 999999999999999999999999985
No 23
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=99.98 E-value=2.9e-32 Score=233.68 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=125.0
Q ss_pred CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HH----Hhh
Q 027207 64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LG----KLN 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~----~l~ 121 (226)
..+|+|||+|||||++ | |..++.+++.||.++||++||+|+|+ +|+||+++++ |. ++.
T Consensus 34 g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~ 113 (271)
T KOG1602|consen 34 GPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIE 113 (271)
T ss_pred CCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999974 1 89999999999999999999999998 8999998863 32 221
Q ss_pred h---------cCC-----------CCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207 122 N---------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (226)
Q Consensus 122 ~---------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~ 175 (226)
. .++ +|+. .....|+++++.+++++.+|.||+||+.|+|.++..+ +.|++++
T Consensus 114 ~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~-~~g~~~~- 191 (271)
T KOG1602|consen 114 RLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRV-KDGDIDV- 191 (271)
T ss_pred HHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhh-hcCCCcc-
Confidence 1 111 2221 1234689999999999999999999999999997664 6777766
Q ss_pred chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
||+ +.++.+.|+ +...|.|||+|||||+.|||||+.||..+||++
T Consensus 192 ~i~----~~~~e~~l~--~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~ 236 (271)
T KOG1602|consen 192 DIN----LSDIEECLY--TSDVPHPDLLIRTSGEDRLSNFLLWQTSETELF 236 (271)
T ss_pred chh----hHHHHHhhc--cCCCCCCCEEEEcCCcchHHHHHHHHhcccEEe
Confidence 555 444556666 557799999999999999999999999999974
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=203.60 Aligned_cols=204 Identities=22% Similarity=0.304 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHH-HhcCCCCCCeEEEEeeCCCC--CCh
Q 027207 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGI--------LKRY-KALDIDKLRYLAIVIESEEA--YHI 82 (226)
Q Consensus 14 ~~~~~~~~~~~l~~liH~~~sl~~~~~~~~~~~~~~~~~~~l--------~~~~-~~~~~k~P~HlavI~d~~~~--~~~ 82 (226)
.+|.......++.......+.+|.+..-.++.. +..+.+.. ++.. +.+ .|.|+|+++|+...+. +..
T Consensus 5 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~l~~s~~~~~a~~r~~r~d~~~L-~k~p~hl~lvI~~v~~~~~~~ 82 (263)
T KOG2818|consen 5 CCMLRSRASLLLLVKFQRCLGAFRRLWLFLIRT-KNLELSKAALHAAQRLFRTDFSSL-KKGPKHLALVIHPVEDGEGSF 82 (263)
T ss_pred HHHHHhhHHHHHHHHHHhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhcchhhh-hhcchhheEEEEecccCCcee
Confidence 455555555555566666677776665444444 33444322 2222 334 5789999988888776 378
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhhhc----CC--CCc-------hhhhhhhcCCCceEEEEEeCC
Q 027207 83 PAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNA----TL--FEE-------AGESNLLLDHKHITLEFASFP 149 (226)
Q Consensus 83 ~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~~~----~~--~~~-------~~~~~~~~~~~~l~v~lls~~ 149 (226)
..+.+++.||...||+++++||..|..+++.+.++..+... .+ .+. .|......+..++.+...+..
T Consensus 83 ~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~snD~~nQ~~~~~L~~~~~s~~ 162 (263)
T KOG2818|consen 83 SDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKLSNDEPNQEDKCKLGTHAISLE 162 (263)
T ss_pred hhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCCCCCCcccccccchhheecccc
Confidence 99999999999999999999999999999988877665432 22 111 122222356778999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHcC--CCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 150 DGKEAVAKAANLLFMKYVKLG--GSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 150 dGr~~Iv~a~r~l~~e~~~~~--~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|||..|+|.++.+...+ ... ..++.|++++.++.++.+ ...|||||+|+||+...++||||||+|+|||+
T Consensus 163 DGr~~i~Dl~r~i~~~~-~~~~~~~~~~~itve~vds~l~e------~~~PePdLll~fg~~~~l~GfpPWhiRltEf~ 234 (263)
T KOG2818|consen 163 DGRMIIIDLTRLIQELC-YLYELYRSETDITVETVDSELKE------FVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFT 234 (263)
T ss_pred cccHHHHHHHHHHHHHH-HHHHHhCCCccccHHHHHHHHHh------cCCCCcceeeeeccchhhcCCCCceeEEEEeE
Confidence 99999999999985443 322 355667787777777765 37899999999999999999999999999985
No 25
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=79.43 E-value=3.2 Score=32.36 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=25.5
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
...|.+++|.+|+++|+.++.+.++++++||
T Consensus 10 v~~n~~e~I~~at~eLl~~i~~~N~l~~~dI 40 (118)
T PF07736_consen 10 VEENTPEEILEATRELLEEILERNELSPEDI 40 (118)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHHHTT--GGGE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 4679999999999999999988889988875
No 26
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=73.43 E-value=4 Score=31.80 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=26.9
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
...+-+++|.+|+++|..++.+.++++++||
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edi 40 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDL 40 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 3578999999999999999988888887764
No 27
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=73.28 E-value=4 Score=31.78 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=26.9
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
...+-+++|.+|+++|..++.+.+++.++||
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~edi 40 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDI 40 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 3578899999999999999988888888764
No 28
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=53.28 E-value=51 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=22.4
Q ss_pred EEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
|++...+.-.++.+.+++.-|.++|++.+++
T Consensus 88 v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 88 IFFRADKTVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4444443346888888888888888888876
No 29
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=52.20 E-value=36 Score=26.00 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.3
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
..+.+||+|..|++..+..-+......|.+.||.+-..
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~ 64 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELI 64 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEE
Confidence 45779999999998767778889999999999987654
No 30
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=48.63 E-value=17 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcEE
Q 027207 149 PDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLL 203 (226)
Q Consensus 149 ~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLl 203 (226)
.++..++.+.+|+|...+ -+|++++|+ ++..|++....-|.|.|+
T Consensus 18 ~~~qpe~~~~Vr~LV~~L-~~~~i~~Ee---------F~~~Lq~~lns~~qP~lv 62 (92)
T smart00549 18 DISQPEVAERVRTLVLGL-VNGTITAEE---------FTSRLQEALNSPLQPYLI 62 (92)
T ss_pred CCCcchHHHHHHHHHHHH-HhCCCCHHH---------HHHHHHHHHcCCCCchhH
Confidence 344489999999998876 566666554 333343333355777663
No 31
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=44.49 E-value=53 Score=25.09 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=22.2
Q ss_pred EEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
|++.+.+.-.++++.+++..|..+|++.+++
T Consensus 87 v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 87 VTLKSDKEAKFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred EEEEeCCCCCHhHHHHHHHHHHHcCCCeEEE
Confidence 3333333336888888999999999888876
No 32
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=42.63 E-value=2e+02 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHHHHhc-CCCEEEEEecCCcccc
Q 027207 78 EAYHIPAVIQLLQWLVDI-GVKHVCLYDAEGILKK 111 (226)
Q Consensus 78 ~~~~~~~l~~l~~W~~~~-GI~~lslYd~sg~lk~ 111 (226)
+....+.+++++.|+.+. |+.-+.+-..+|-.-.
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~ 50 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL 50 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCccc
Confidence 335799999999999999 9999999998876533
No 33
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=41.70 E-value=39 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 148 ~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
..+.-++|.+|++.|.++...++...|+|+
T Consensus 13 ~~nt~eeI~~at~eLl~~i~~~N~~~pedv 42 (125)
T COG4401 13 ESNTEEEILDATKELLEEIEEENITDPEDV 42 (125)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCChhhe
Confidence 456789999999999999877777888765
No 34
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=39.58 E-value=3e+02 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.0
Q ss_pred CCCCeEEEEeeCCCC----------CChHHHHHHHHHHHhcCCCEE
Q 027207 65 DKLRYLAIVIESEEA----------YHIPAVIQLLQWLVDIGVKHV 100 (226)
Q Consensus 65 k~P~HlavI~d~~~~----------~~~~~l~~l~~W~~~~GI~~l 100 (226)
+-|.|+||.+--.+. +.=+++..++.-+.+.|||.|
T Consensus 262 ~nPThiaI~l~Y~~gETplPlVi~k~~daqA~~i~~iAe~~~ipVv 307 (349)
T COG4792 262 KNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEEEGIPVV 307 (349)
T ss_pred ecCceEEEEEeeccCCCCCCEEEEecCcHHHHHHHHHHHHhCCCee
Confidence 459999998864431 234567778888888899876
No 35
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.61 E-value=2.3e+02 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=32.3
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecC
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~s 106 (226)
..+.+||+|+-|++..+..-+..-...|.+.||..-. |.+.
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~-~~l~ 64 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVG-IELP 64 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEE-EECC
Confidence 3445999999999876777788889999999998654 4444
No 36
>PRK09482 flap endonuclease-like protein; Provisional
Probab=34.77 E-value=1.7e+02 Score=25.68 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=25.4
Q ss_pred CCCeEEEEeeCCCC-----------------C----ChHHHHHHHHHHHhcCCCEEEE
Q 027207 66 KLRYLAIVIESEEA-----------------Y----HIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 66 ~P~HlavI~d~~~~-----------------~----~~~~l~~l~~W~~~~GI~~lsl 102 (226)
.|.|++|+.|+... . ...++..+-..+..+||+.++.
T Consensus 46 ~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~ 103 (256)
T PRK09482 46 QPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHA 103 (256)
T ss_pred CCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEecc
Confidence 49999999997421 0 3445555667777889888764
No 37
>PRK11024 colicin uptake protein TolR; Provisional
Probab=34.48 E-value=1.1e+02 Score=23.88 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=25.0
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 71 AIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 71 avI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
.|++.+.+.-.++.+.+++.-|.++|+..+++
T Consensus 105 ~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 105 VFLIGGAKDVPYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 34554444447999999999999999999987
No 38
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=32.22 E-value=38 Score=22.61 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027207 20 LGLWIIWLLIHFAVDL 35 (226)
Q Consensus 20 ~~~~~l~~liH~~~sl 35 (226)
+--.+.|.+.|++.|.
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02679 37 QSVVFSWFLFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456889999988885
No 39
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=32.05 E-value=1e+02 Score=23.52 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=23.0
Q ss_pred EEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
|++...+.-.++.+.+++.-|.++|+..+++
T Consensus 96 v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 96 VLIRADKTVPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4444443347888999999999999988876
No 40
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=31.39 E-value=39 Score=22.56 Aligned_cols=16 Identities=19% Similarity=0.787 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027207 20 LGLWIIWLLIHFAVDL 35 (226)
Q Consensus 20 ~~~~~l~~liH~~~sl 35 (226)
+--.+.|.+.|++.|.
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA03047 37 QSILFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456889999988875
No 41
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=31.32 E-value=3.5e+02 Score=23.48 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=8.8
Q ss_pred CCC-CeEEEEee
Q 027207 65 DKL-RYLAIVIE 75 (226)
Q Consensus 65 k~P-~HlavI~d 75 (226)
.+| +++|+|+.
T Consensus 53 ~lP~r~vgvVLG 64 (235)
T COG2949 53 DLPARQVGVVLG 64 (235)
T ss_pred hCCccceEEEEe
Confidence 455 69999998
No 42
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.65 E-value=1.2e+02 Score=22.59 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~s 106 (226)
-+..+.+++.... ...++.+.+.+|.+.|++.+++=+..
T Consensus 46 ~~~d~vi~iS~sG--~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG--ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3678888886543 57889999999999999999997754
No 43
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=30.59 E-value=1.2e+02 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHhHhhhh
Q 027207 24 IIWLLIHFAVDLWY----------FALHIACAIESYLISS 53 (226)
Q Consensus 24 ~l~~liH~~~sl~~----------~~~~~~~~~~~~~~~~ 53 (226)
+||.++|++|++.+ .++..|+-+ +|-|-.
T Consensus 53 vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNil-MYaIPy 91 (141)
T PRK13743 53 VLWVIMHSIFDACIDSWKADPELNNFRYMWNIL-MYVIPY 91 (141)
T ss_pred HHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHH-HHHHHH
Confidence 78999999999864 467777766 665544
No 44
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.11 E-value=2.7e+02 Score=24.97 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=33.0
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
.+.+||+|.-|++..+..-+..-...|.+.||..- ++.+..
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~ 70 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSE-AFRLPA 70 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 44599999999987777888889999999999876 455443
No 45
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.77 E-value=2.9e+02 Score=24.77 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=40.5
Q ss_pred hHHHHHhcCCCCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 55 ILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 55 l~~~~~~~~~k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
+..+..++ ..+.+|++|+-|++..+..-+..-...|.+.||..-. +.+.... ..+++.+.+.
T Consensus 16 ~k~~v~~l--~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~-~~l~~~~--t~~el~~~I~ 77 (287)
T PRK14181 16 IKENISAS--STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKA-HRLPSDA--TLSDILKLIH 77 (287)
T ss_pred HHHHHHHh--CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEE-EECCCCC--CHHHHHHHHH
Confidence 33344444 3445999999999876777788899999999998754 4544332 2344444443
No 46
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.65 E-value=3.3e+02 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=33.2
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCc
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~ 108 (226)
++.+||+|+-|++..+..-+......|.+.||..- +|.+...
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~ 72 (284)
T PRK14179 31 IVPGLVVILVGDNPASQVYVRNKERSALAAGFKSE-VVRLPET 72 (284)
T ss_pred CCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCC
Confidence 34499999999987677778888999999999875 5665543
No 47
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=28.58 E-value=1.9e+02 Score=22.69 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHhcCCCEEEE
Q 027207 81 HIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 81 ~~~~l~~l~~W~~~~GI~~lsl 102 (226)
.++.+.+++.-|.++|+..+++
T Consensus 111 ~~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 111 DYETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 4666666666666666666665
No 48
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.44 E-value=3.2e+02 Score=24.67 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=31.6
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~s 106 (226)
.+.+||+|+-|++..+..-+..-...|.+.||..- ++.+.
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~ 71 (301)
T PRK14194 32 IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSL-EHRLP 71 (301)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECC
Confidence 44599999999987667778888999999999865 44443
No 49
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.41 E-value=3.5e+02 Score=24.19 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=32.8
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
.+.+||+|.-|++..+..-+......|.+.||.+- +|.+..
T Consensus 31 ~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~ 71 (285)
T PRK14189 31 HQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSL-KDRYPA 71 (285)
T ss_pred CCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 34499999999987777788889999999999864 555544
No 50
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.23 E-value=3.1e+02 Score=24.36 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=29.2
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEE
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVC 101 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~ls 101 (226)
.+.+|++|+-|++..+..-+..-..||.+.||+..-
T Consensus 32 ~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~ 67 (283)
T PRK14192 32 RTPILATILVGDDPASATYVRMKGNACRRVGMDSLK 67 (283)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEE
Confidence 445999999999876667778888999999997543
No 51
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=28.05 E-value=52 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027207 20 LGLWIIWLLIHFAVDL 35 (226)
Q Consensus 20 ~~~~~l~~liH~~~sl 35 (226)
+--.+.|.+.|++.|.
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02724 37 QTIVFIWFIFHFVHSA 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456888999988874
No 52
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.87 E-value=3e+02 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
.+.+||+|.-|++..+..-+..-...|.+.||..- +|.+.... ..+++.+.+.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 82 (295)
T PRK14174 30 KVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNST-VIELPADT--TEEHLLKKIE 82 (295)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 45599999999987677778889999999999864 55555432 2334444443
No 53
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.01 E-value=3.6e+02 Score=24.27 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=32.8
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
++.+||+|+-|++..+..-+......|.+.||..- +|.+..
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~ 71 (294)
T PRK14187 31 LFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSE-TILLPS 71 (294)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 45599999999987777788889999999999764 455543
No 54
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=26.40 E-value=1.2e+02 Score=26.47 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=32.4
Q ss_pred CCCeEEEEeeCCCC----C------ChHHHHHHHHHHHhcCCCEEEEEec
Q 027207 66 KLRYLAIVIESEEA----Y------HIPAVIQLLQWLVDIGVKHVCLYDA 105 (226)
Q Consensus 66 ~P~HlavI~d~~~~----~------~~~~l~~l~~W~~~~GI~~lslYd~ 105 (226)
+|.-+.+|++..+. + ..+.+.+++.-+.+.||+ ||+|--
T Consensus 83 kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~-VSLFiD 131 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIR-VSLFID 131 (234)
T ss_pred CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCE-EEEEeC
Confidence 59999999997653 1 578899999999999996 888853
No 55
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=26.29 E-value=59 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027207 20 LGLWIIWLLIHFAVDL 35 (226)
Q Consensus 20 ~~~~~l~~liH~~~sl 35 (226)
+--.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PF06269_consen 37 QSIVFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456889999998875
No 56
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=26.04 E-value=73 Score=31.10 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHH
Q 027207 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKE 114 (226)
Q Consensus 67 P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~ 114 (226)
|+|++=++|.+ +.++.++++..|-..+||-|+|=|-.|.+-....
T Consensus 333 p~~~~G~l~~~---sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~ 377 (526)
T COG4799 333 PRHLGGVLDID---SADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQ 377 (526)
T ss_pred ccccccccchH---HHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhH
Confidence 55555455433 5899999999999999999999999888765544
No 57
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.03 E-value=4.7e+02 Score=23.44 Aligned_cols=40 Identities=10% Similarity=-0.089 Sum_probs=31.9
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~s 106 (226)
++.+||+|.-|++..+..-+..-...|.+.||..- +|.+.
T Consensus 37 ~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~-~~~l~ 76 (287)
T PRK14176 37 ITPGLATILVGDDPASKMYVRLKHKACERVGIRAE-DQFLP 76 (287)
T ss_pred CCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEE-EEECC
Confidence 34499999999987777788889999999999764 44444
No 58
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.88 E-value=3.8e+02 Score=24.07 Aligned_cols=53 Identities=15% Similarity=0.037 Sum_probs=36.8
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
..| +||+|.-|++..+..-+..-...|.+.||..- +|.+.... ..+++.+.+.
T Consensus 28 ~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 80 (287)
T PRK14173 28 FVP-HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQ-VEVLPEST--SQEELLELIA 80 (287)
T ss_pred CCC-cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 345 89999999987677778889999999999764 45554332 2334444443
No 59
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=25.62 E-value=2.4e+02 Score=25.49 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 027207 32 AVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLY 103 (226)
Q Consensus 32 ~~sl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslY 103 (226)
+=.||.++| ... .|+.|-.++.+.++.+..+|.-=++++...+ --+++.+.+.-+.+.||..||+=
T Consensus 183 VprL~~~VR---p~A-~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gvdilTiG 248 (306)
T COG0320 183 VPRLYPRVR---PGA-TYERSLSLLERAKELGPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGVDILTIG 248 (306)
T ss_pred chhcccccC---CCC-cHHHHHHHHHHHHHhCCCcccccceeeecCC--cHHHHHHHHHHHHHcCCCEEEec
Confidence 344555555 222 5888888899998887778877788887665 47899999999999999999984
No 60
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.49 E-value=4.2e+02 Score=23.77 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=37.2
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
.| +||+|.-|++..+..-+..-...|.+.||..- +|.+.... ..+++.+.+.
T Consensus 32 ~P-~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--~~~~l~~~I~ 83 (288)
T PRK14171 32 SP-KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTL-LVNLSTTI--HTNDLISKIN 83 (288)
T ss_pred CC-eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 35 89999999987677778889999999999654 66665443 2334544443
No 61
>PF13305 WHG: WHG domain; PDB: 1ZK8_B 3ON2_B 3CJD_B.
Probab=24.44 E-value=1e+02 Score=20.72 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027207 19 NLGLWIIWLLIHFAVDLWY 37 (226)
Q Consensus 19 ~~~~~~l~~liH~~~sl~~ 37 (226)
..+...+|..+|++.+|+.
T Consensus 59 ~~~~~~~wa~~HG~~~L~~ 77 (81)
T PF13305_consen 59 REIALALWAAVHGLASLFL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677789999999999854
No 62
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.30 E-value=1.6e+02 Score=23.57 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~s 106 (226)
.|..+.|++.... .-.++.+.+.+|.+.|++.+++=+..
T Consensus 100 ~~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSG--NSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4778988888553 47889999999999999999987664
No 63
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=24.10 E-value=1.2e+02 Score=25.20 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=24.6
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLY 103 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslY 103 (226)
..|||+-++.||...++-.+..+.+.-..+.||.-.++=
T Consensus 130 ~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVG 168 (193)
T cd01477 130 NYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVA 168 (193)
T ss_pred CCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 469999999886432222334455555678898766653
No 64
>PRK04239 hypothetical protein; Provisional
Probab=23.84 E-value=2e+02 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCC
Q 027207 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEP 200 (226)
Q Consensus 151 Gr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~peP 200 (226)
-|++.++++..+.-.+++.|.+... ++|+++-+.|..+.....||
T Consensus 61 vkPe~A~~VE~~liqlAq~G~i~~k-----i~e~~L~~lL~~v~~~kre~ 105 (110)
T PRK04239 61 VKPEFAEQVEQQLIQLAQSGRIQGP-----IDDEQLKEILEQLTPQKREF 105 (110)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCCC-----cCHHHHHHHHHHHhhcccCc
Confidence 3788888888877777799987642 55777877777654444444
No 65
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.80 E-value=4.1e+02 Score=23.77 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
.+.+|++|.-|++..+.--+......|.+.||..- +|.+..
T Consensus 30 ~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~ 70 (282)
T PRK14180 30 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQ-VITLPE 70 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 44599999999886666778888999999999764 455443
No 66
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=23.65 E-value=93 Score=26.17 Aligned_cols=28 Identities=0% Similarity=-0.021 Sum_probs=22.4
Q ss_pred CeEEEEeeCCCCCChHHHHHHHHHHHhc
Q 027207 68 RYLAIVIESEEAYHIPAVIQLLQWLVDI 95 (226)
Q Consensus 68 ~HlavI~d~~~~~~~~~l~~l~~W~~~~ 95 (226)
-|||.|++++.-.|..++.+++.|++..
T Consensus 87 ~hIaYiP~~~~ViGLSKl~RiV~~~arR 114 (188)
T PLN03044 87 IHVGYIPNAGVILGLSKLARIAEVYARR 114 (188)
T ss_pred EEEEEECCCCccccHHHHHHHHHHHhcC
Confidence 4999999634445999999999998754
No 67
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=23.48 E-value=2e+02 Score=21.51 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=19.4
Q ss_pred eEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 69 HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
.+.+..|.+ -.++.+.+++.-|..+|++.+++
T Consensus 94 ~v~i~aD~~--~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 94 RVLIRADKD--APYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp -EEEEE-TT--S-HHHHHHHHHHHHHTT---EE-
T ss_pred eEEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEE
Confidence 344444433 36999999999999999998876
No 68
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=23.42 E-value=94 Score=28.31 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEecCCcc
Q 027207 81 HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (226)
Q Consensus 81 ~~~~l~~l~~W~~~~GI~~lslYd~sg~l 109 (226)
+++++.+++..|.+.|+|.|||-|-.|..
T Consensus 136 g~rKa~R~m~lA~~f~iPvVtlvDTpGa~ 164 (316)
T TIGR00513 136 GYRKALRLMKMAERFKMPIITFIDTPGAY 164 (316)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 79999999999999999999999998865
No 69
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=23.39 E-value=97 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEecCCcc
Q 027207 81 HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (226)
Q Consensus 81 ~~~~l~~l~~W~~~~GI~~lslYd~sg~l 109 (226)
+++++.+++.-|.+.|+|.|+|.|-.|-.
T Consensus 83 g~rKa~R~~~lA~~~~lPvV~lvDtpGa~ 111 (256)
T PRK12319 83 GYRKALRLMKQAEKFGRPVVTFINTAGAY 111 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCcC
Confidence 79999999999999999999999988764
No 70
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.03 E-value=4.5e+02 Score=23.59 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=32.9
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCc
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~ 108 (226)
.+.+||+|+-|++..+..-+..-...|.+.||..- +|.+...
T Consensus 31 ~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~ 72 (296)
T PRK14188 31 VTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASF-EHKLPAD 72 (296)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCC
Confidence 45599999999987677778889999999999843 5555433
No 71
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.96 E-value=4.7e+02 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
.+..||+|+-|++..+..-+......|.+.||..- +|.+..
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~ 70 (285)
T PRK14191 30 KRPKLAVILVGKDPASQTYVNMKIKACERVGMDSD-LHTLQE 70 (285)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 44489999999987677778889999999999865 444443
No 72
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=22.64 E-value=53 Score=22.98 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=17.7
Q ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027207 2 DFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFA 39 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~liH~~~sl~~~~ 39 (226)
|||.||.. ||......--|--++=+..+|-.+
T Consensus 13 DFr~SM~E------MI~~~~i~~~w~~LeeLL~cYL~L 44 (66)
T TIGR01568 13 DFRRSMEE------MIEERELEADWKELEELLACYLDL 44 (66)
T ss_pred HHHHHHHH------HHHHcCCCCCHHHHHHHHHHHHHh
Confidence 89999988 444333222355555555544433
No 73
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.61 E-value=4.2e+02 Score=23.70 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHh
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l 120 (226)
.+.+|++|.-|++..+..-+..-...|.+.||..- +|.+.... ..+++.+.+
T Consensus 31 ~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--~~~~l~~~I 82 (286)
T PRK14175 31 FTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISE-IVHLEETA--TEEEVLNEL 82 (286)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHH
Confidence 44599999999987677778889999999999764 56665443 233444444
No 74
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=22.00 E-value=2e+02 Score=21.20 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.8
Q ss_pred eEEEEeeCCCCC---ChHHHHHHHHHH-HhcCCCEEEEEecCCcc
Q 027207 69 YLAIVIESEEAY---HIPAVIQLLQWL-VDIGVKHVCLYDAEGIL 109 (226)
Q Consensus 69 HlavI~d~~~~~---~~~~l~~l~~W~-~~~GI~~lslYd~sg~l 109 (226)
++++.++.+-.+ +.+.+..++.|+ ...|+..+..+-..+|.
T Consensus 86 eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~ 130 (142)
T PF13302_consen 86 EIGYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNE 130 (142)
T ss_dssp EEEEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-H
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCH
Confidence 566665544222 568899999999 68999999999887653
No 75
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.88 E-value=5.5e+02 Score=22.55 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=28.1
Q ss_pred CCCCChHHHHHHHHHHHhcC-CCEEEEEecCCcc
Q 027207 77 EEAYHIPAVIQLLQWLVDIG-VKHVCLYDAEGIL 109 (226)
Q Consensus 77 ~~~~~~~~l~~l~~W~~~~G-I~~lslYd~sg~l 109 (226)
+.....+.+++++.|+.+.| |.-+.+--.+|-.
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~ 48 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGEN 48 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCccccc
Confidence 33458999999999999999 9999999888764
No 76
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.67 E-value=4.8e+02 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccc
Q 027207 77 EEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKK 111 (226)
Q Consensus 77 ~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~ 111 (226)
+.....+.+++++.|+.+.||.-+.+.-.+|..-.
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ 50 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPT 50 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcCCcccc
Confidence 33358999999999999999999999988876533
No 77
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.48 E-value=3.9e+02 Score=24.02 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
.+..|++|+-|++..+..-+..-...|.+.||..- ++.+.+.. ..+++.+.+.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 82 (293)
T PRK14185 30 KRPHLAAILVGHDGGSETYVANKVKACEECGFKSS-LIRYESDV--TEEELLAKVR 82 (293)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 45599999999986667777888999999999875 45554432 2344444443
No 78
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.39 E-value=5.5e+02 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCC
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEG 107 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg 107 (226)
.+.+|++|+-|++..+..-+..-...|.+.||..- +|.+..
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~ 69 (282)
T PRK14169 29 VTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSL-MFRLPE 69 (282)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 34489999999987677778889999999999764 555543
No 79
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.31 E-value=1.6e+02 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.6
Q ss_pred eEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcc
Q 027207 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (226)
Q Consensus 69 HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~l 109 (226)
-|-|+.|... ...++..||...|-+.+++.+-.|.+
T Consensus 29 ~l~v~~d~~~-----~~~di~~~~~~~g~~~~~~~~~~~~~ 64 (70)
T PF01206_consen 29 VLEVLVDDPA-----AVEDIPRWCEENGYEVVEVEEEGGEY 64 (70)
T ss_dssp EEEEEESSTT-----HHHHHHHHHHHHTEEEEEEEESSSSE
T ss_pred EEEEEECCcc-----HHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 5667776443 46889999999999999998866554
No 80
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=21.01 E-value=1.1e+02 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCCeEEEEeeCCCC----------C---------ChHHHHHHHHHHHhcCCCEEEE
Q 027207 66 KLRYLAIVIESEEA----------Y---------HIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 66 ~P~HlavI~d~~~~----------~---------~~~~l~~l~~W~~~~GI~~lsl 102 (226)
.|.|++++.|+... . ...++..+-.++..+||+.+..
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~ 105 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEV 105 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecC
Confidence 58999999998752 0 3455667778888899998765
No 81
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=20.82 E-value=1.1e+02 Score=27.85 Aligned_cols=68 Identities=15% Similarity=-0.021 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHHHHHHHHH----cCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchh
Q 027207 149 PDGKEAVAKAANLLFMKYVK----LGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAW 218 (226)
Q Consensus 149 ~dGr~~Iv~a~r~l~~e~~~----~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pW 218 (226)
.|=|.+|...-+++. +.+. ......+....+.++++|.+.|.++....|=.-|.|.|+|+ ++++=+|=
T Consensus 87 ~~L~~eI~~f~~~l~-~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLaltTSG~-~lst~lp~ 158 (302)
T PF05508_consen 87 KDLRREIDSFDERLE-EAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINLALTTSGV-NLSTSLPP 158 (302)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhccc-cccCCCCC
Confidence 445667777766663 2222 11111222334577888888888888888999999999995 46665553
No 82
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.39 E-value=4.5e+02 Score=23.68 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhh
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~ 121 (226)
...+|++|+-|++..+..-+......|.+.||+. .+|.+.... ..+++.+.+.
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~--t~~el~~~I~ 84 (297)
T PRK14168 32 KVPGLVTILVGESPASLSYVTLKIKTAHRLGFHE-IQDNQSVDI--TEEELLALID 84 (297)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 3349999999998766777888899999999996 466654432 3344544443
No 83
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.34 E-value=1.8e+02 Score=21.28 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=17.4
Q ss_pred CeEEEEeeCCCCCChHHHHHHHHHHHhcCCCE
Q 027207 68 RYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (226)
Q Consensus 68 ~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~ 99 (226)
.|+|+.++ .+++.++..++.+.|++.
T Consensus 60 ~h~a~~v~------~~dl~~~~~~l~~~G~~~ 85 (123)
T cd08351 60 QHYAFLVS------EEEFDRIFARIRERGIDY 85 (123)
T ss_pred ceEEEEeC------HHHHHHHHHHHHHcCCce
Confidence 56666554 245777788888888764
Done!