Query 027207
Match_columns 226
No_of_seqs 160 out of 1200
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vg0_A Short-chain Z-isoprenyl 100.0 7E-43 2.4E-47 298.8 12.8 159 65-226 1-203 (227)
2 3sgv_B Undecaprenyl pyrophosph 100.0 1.8E-42 6E-47 298.9 12.6 161 59-226 10-215 (253)
3 1f75_A Undecaprenyl pyrophosph 100.0 5.9E-43 2E-47 302.5 9.5 156 64-226 18-218 (249)
4 2vg3_A Undecaprenyl pyrophosph 100.0 4.3E-42 1.5E-46 301.3 12.5 155 65-226 54-253 (284)
5 4h8e_A Undecaprenyl pyrophosph 100.0 3.7E-42 1.3E-46 297.4 11.5 156 64-226 22-222 (256)
6 2d2r_A Undecaprenyl pyrophosph 100.0 3.1E-42 1.1E-46 297.3 8.7 155 64-226 13-212 (245)
7 3qas_B Undecaprenyl pyrophosph 100.0 1.2E-41 4.3E-46 294.6 11.9 155 65-226 12-215 (253)
8 3ugs_B Undecaprenyl pyrophosph 100.0 9.5E-40 3.3E-44 277.6 13.5 147 64-226 4-195 (225)
9 1xho_A Chorismate mutase; sout 75.0 2.9 9.8E-05 32.7 3.9 32 146-177 40-71 (148)
10 1dbf_A Protein (chorismate mut 69.7 3.5 0.00012 31.5 3.2 31 147-177 12-42 (127)
11 1ufy_A Chorismate mutase; shik 67.5 4.2 0.00014 30.8 3.2 31 147-177 11-42 (122)
12 2pfu_A Biopolymer transport EX 37.1 75 0.0026 21.7 5.6 24 80-103 68-91 (99)
13 3ngx_A Bifunctional protein fo 36.1 1E+02 0.0036 26.2 7.2 58 57-120 19-76 (276)
14 2h7b_A Core-binding factor, ML 33.4 38 0.0013 24.8 3.4 41 152-202 24-64 (105)
15 2p6v_A Transcription initiatio 33.1 21 0.00071 26.6 1.9 48 145-202 32-79 (114)
16 4b4u_A Bifunctional protein fo 29.0 1.1E+02 0.0039 26.3 6.3 39 65-103 51-89 (303)
17 2ksn_A Ubiquitin domain-contai 26.2 1.1E+02 0.0037 23.4 5.0 59 148-218 51-109 (137)
18 3pzj_A Probable acetyltransfer 24.8 1.3E+02 0.0045 22.6 5.6 41 69-109 121-165 (209)
19 1hgv_A PH75 inovirus major coa 24.5 1.2E+02 0.0042 18.2 5.4 25 1-25 1-27 (46)
20 1h8b_A ACT-EF34, alpha-actinin 23.4 63 0.0022 21.6 3.0 43 148-193 5-47 (75)
21 4a26_A Putative C-1-tetrahydro 23.3 1.6E+02 0.0055 25.3 6.2 37 66-102 36-72 (300)
22 1mkz_A Molybdenum cofactor bio 23.0 1.5E+02 0.0051 22.8 5.5 65 138-209 8-79 (172)
23 1m5w_A Pyridoxal phosphate bio 22.6 1.1E+02 0.0039 25.6 4.9 38 66-104 87-134 (243)
24 1eij_A Hypothetical protein MT 22.2 1.7E+02 0.0057 20.2 5.0 39 151-194 31-69 (80)
25 4a5o_A Bifunctional protein fo 21.6 2.4E+02 0.0082 24.0 6.9 38 65-102 33-70 (286)
26 3pfn_A NAD kinase; structural 21.3 1E+02 0.0034 27.3 4.6 37 65-104 36-72 (365)
27 2j8m_A Acetyltransferase PA486 21.2 1.7E+02 0.0058 21.0 5.4 38 71-108 87-127 (172)
28 2w84_A Peroxisomal membrane pr 20.6 1.2E+02 0.0043 20.4 3.9 48 150-201 12-67 (70)
No 1
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=7e-43 Score=298.79 Aligned_cols=159 Identities=19% Similarity=0.302 Sum_probs=128.8
Q ss_pred CCCCeEEEEeeCCCC-----C----------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHhh----
Q 027207 65 DKLRYLAIVIESEEA-----Y----------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKLN---- 121 (226)
Q Consensus 65 k~P~HlavI~d~~~~-----~----------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l~---- 121 (226)
++|+|||||||||++ + |++++.+++.||.++||++||+|+| ++|+|++.+++ |+.+.
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 579999999999851 1 6899999999999999999999998 69999998753 43322
Q ss_pred h----cCC-----------CCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhh
Q 027207 122 N----ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (226)
Q Consensus 122 ~----~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~ 180 (226)
+ .+. +|.. .+...|+++++++|+++++||||+||++|+|++++++ ++|+++++|....
T Consensus 81 ~~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v-~~g~l~~~~~~~~ 159 (227)
T 2vg0_A 81 EICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKE-LANGATAEELVDA 159 (227)
T ss_dssp HHTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhHhhcc
Confidence 1 111 2221 1234588999999999999999999999999998876 7888999881112
Q ss_pred hhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 181 l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
++|+.++++|+ +.++|||||+|||||+.|+|||||||++|||||
T Consensus 160 I~e~~i~~~L~--t~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEly 203 (227)
T 2vg0_A 160 VTVEGISENLY--TSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMW 203 (227)
T ss_dssp CCHHHHHHHST--TTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEE
T ss_pred CCHHHHHHhhc--cCCCCCCcEEEEcCCCccccCcchHHHcCeEEE
Confidence 33566777776 578999999999999999999999999999986
No 2
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=1.8e-42 Score=298.89 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHhcCCCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHh
Q 027207 59 YKALDIDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKL 120 (226)
Q Consensus 59 ~~~~~~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l 120 (226)
-.....++|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+||+.++ ||+.+
T Consensus 10 ~~~~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~ 89 (253)
T 3sgv_B 10 SEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELF 89 (253)
T ss_dssp ---CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHH
T ss_pred CcccCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHH
Confidence 344556789999999999963 1 89999999999999999999999996 899999875 44332
Q ss_pred hh----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 027207 121 NN----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSG 173 (226)
Q Consensus 121 ~~----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~ 173 (226)
.+ .+ .+|.. .+...|+++++++|+++.+||||+||++|+|++++++ ++|+++
T Consensus 90 ~~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v-~~g~l~ 168 (253)
T 3sgv_B 90 VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQ 168 (253)
T ss_dssp HTTHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HHTSSC
T ss_pred HHHHHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCC
Confidence 21 11 23321 1335689999999999999999999999999998886 788899
Q ss_pred ccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 174 KIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 174 ~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+++|| |+.++++|+ +.++|||||+|||||+.|||||||||++|||||
T Consensus 169 ~~~I~----e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsEly 215 (253)
T 3sgv_B 169 PDQID----EEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELY 215 (253)
T ss_dssp GGGCC----HHHHHTTST--TTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEE
T ss_pred hhhCC----HHHHHHhhc--ccCCCCCcEEEEecCCCcccCchHHHHcCEEEE
Confidence 98876 566777777 678999999999999999999999999999986
No 3
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=5.9e-43 Score=302.55 Aligned_cols=156 Identities=22% Similarity=0.338 Sum_probs=119.8
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---H--------
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---L-------- 117 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~-------- 117 (226)
.++|+|||||||||++ + |++++.+++.||.++||++||+|+|| +|+|++.+++ |
T Consensus 18 ~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 97 (249)
T 1f75_A 18 AQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLN 97 (249)
T ss_dssp TTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHH
T ss_pred CCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999952 1 79999999999999999999999985 8999987642 2
Q ss_pred HHhhh---cC----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 118 GKLNN---AT----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 118 ~~l~~---~~----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+.+++ .+ .+|.. .+...|+++++++|+++++||||+||++|+|++++++ ++|++++++||
T Consensus 98 ~~~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v-~~g~l~~~~I~ 176 (249)
T 1f75_A 98 TFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERY-KSGEISLDEIS 176 (249)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHH-HTTSSCGGGCS
T ss_pred HHHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence 11111 11 13331 1234588999999999999999999999999998876 78889999877
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ +.++|||||+|||||+.|||||||||++|||||
T Consensus 177 ----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly 218 (249)
T 1f75_A 177 ----ETHFNEYLF--TANMPDPELLIRTSGEERLSNFLIWQCSYSEFV 218 (249)
T ss_dssp ----HHHHGGGST--TTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEE
T ss_pred ----HHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhhceEEE
Confidence 455666766 678999999999999999999999999999986
No 4
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=4.3e-42 Score=301.29 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=128.7
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHhh----h
Q 027207 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN----N 122 (226)
Q Consensus 65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l~----~ 122 (226)
++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +|+|++.++ ||+.+. +
T Consensus 54 ~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~ 133 (284)
T 2vg3_A 54 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 133 (284)
T ss_dssp TSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999852 178999999999999999999999985 899999875 333221 1
Q ss_pred -------c----------CCCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207 123 -------A----------TLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (226)
Q Consensus 123 -------~----------~~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~ 179 (226)
. ..+|.. .+...|+++++++|+++++||||+||++|+|++++++ ++|++++++||
T Consensus 134 ~~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v-~~g~l~~~dI~- 211 (284)
T 2vg3_A 134 RRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREV-AAGRLNPERIT- 211 (284)
T ss_dssp HHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHH-HTTSSCGGGCC-
T ss_pred HHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHHCC-
Confidence 1 123321 1334688999999999999999999999999998876 78899999877
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ +.++|||||+|||||+.|||||||||++|||||
T Consensus 212 ---e~~i~~~L~--t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsEly 253 (284)
T 2vg3_A 212 ---ESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYI 253 (284)
T ss_dssp ---HHHHHHHSS--STTCCCCSEEEECTTCCCCTTTTTTTTTTCEEE
T ss_pred ---HHHHHHHhc--cCCCCCCcEEEeCCCCccccCCCchhhcceEEE
Confidence 455667776 678999999999999999999999999999986
No 5
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-42 Score=297.36 Aligned_cols=156 Identities=16% Similarity=0.269 Sum_probs=130.5
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
.++|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +|+|++.+++ |+.+.
T Consensus 22 ~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 101 (256)
T 4h8e_A 22 SNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLK 101 (256)
T ss_dssp TCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999963 1 89999999999999999999999986 8999998763 32221
Q ss_pred ----h--cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 ----N--AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ----~--~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
. .+ .+|.. .+...|+++++++++++.+||||+||++|+|++++++ ++|++++++||
T Consensus 102 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v-~~g~l~~~~I~ 180 (256)
T 4h8e_A 102 TFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDEL-HQQGLNSDIID 180 (256)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCGGGCC
T ss_pred HHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHH-HcCCCChhhCC
Confidence 1 11 23331 1345689999999999999999999999999998886 78889999876
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ +.+.|||||+|||||+.|+|||||||++|||||
T Consensus 181 ----e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsEly 222 (256)
T 4h8e_A 181 ----ETYINNHLM--TKDYPDPELLIRTSGEQRISNFLIWQVSYSEFI 222 (256)
T ss_dssp ----HHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEE
T ss_pred ----HHHHHHhCC--CCCCCCCcEEEEcCCCCcccCchHHHHcCeEEE
Confidence 556777776 678999999999999999999999999999986
No 6
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=3.1e-42 Score=297.25 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=118.6
Q ss_pred CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l~---- 121 (226)
.++|+|||||||||++ + |++++.+++.||.++||++||+|+|| +|+|++.++ ||+.+.
T Consensus 13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999852 1 78999999999999999999999985 899998653 443221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. .+...|+++++++|+++++||||+||++|+|++++++ ++ +++++|||
T Consensus 93 ~~~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v-~~-~l~~~~I~ 170 (245)
T 2d2r_A 93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESP-PS-NISLLESL 170 (245)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSC-CT-TGGGCSCC
T ss_pred HHHHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-Hh-cCChhhCC
Confidence 1 11 12321 1334688999999999999999999999999998775 44 77888876
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ +.++|||||+|||||+.|+|||||||++|||||
T Consensus 171 ----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly 212 (245)
T 2d2r_A 171 ----ENEISNRLD--TRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELF 212 (245)
T ss_dssp ----HHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEE
T ss_pred ----HHHHHHHhc--cCCCCCCcEEEEcCCCccccCCcchhhcceEEE
Confidence 555667776 678999999999999999999999999999986
No 7
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=1.2e-41 Score=294.58 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=119.2
Q ss_pred CCC----CeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHH---
Q 027207 65 DKL----RYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGK--- 119 (226)
Q Consensus 65 k~P----~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~--- 119 (226)
++| +|||||||||++ + |++++.+++.||.++||++||+|+|| +|+|++.+++ ++.
T Consensus 12 ~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~ 91 (253)
T 3qas_B 12 KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVW 91 (253)
T ss_dssp -CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CT
T ss_pred CCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHH
Confidence 578 999999999962 1 78999999999999999999999996 8999987653 321
Q ss_pred -----hh---hc----------CCCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207 120 -----LN---NA----------TLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (226)
Q Consensus 120 -----l~---~~----------~~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~ 175 (226)
++ +. ..+|.. .+...|+++++++|+++++||||+||++|+|++++++ ++|+++++
T Consensus 92 ~l~~~~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v-~~g~l~~~ 170 (253)
T 3qas_B 92 ALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPD 170 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HTTSCCGG
T ss_pred HHHHHHHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChH
Confidence 11 11 123331 1234688999999999999999999999999998876 78889999
Q ss_pred chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
+|| |+.++++|+ +.++|||||+|||||+.|+|||||||++|||||
T Consensus 171 ~I~----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly 215 (253)
T 3qas_B 171 QID----EEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELY 215 (253)
T ss_dssp GCC----HHHHHTTST--TTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEE
T ss_pred HCC----HHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhcCEEEE
Confidence 877 455667776 678999999999999999999999999999986
No 8
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=9.5e-40 Score=277.57 Aligned_cols=147 Identities=17% Similarity=0.303 Sum_probs=119.7
Q ss_pred CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207 64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---- 121 (226)
Q Consensus 64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---- 121 (226)
+++|+|||||||||++ | |++++.+++.||.+.||++||+|+|| +|+|++.+++ |+.+.
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999974 1 89999999999999999999999986 8999998763 33221
Q ss_pred h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207 122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (226)
Q Consensus 122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~ 178 (226)
+ .+ .+|.. .+...|+++++++++++.+||||+||++|+|+++ +.| ++||
T Consensus 84 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv----~~g----~~I~ 155 (225)
T 3ugs_B 84 EALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVI----EKK----LELN 155 (225)
T ss_dssp HHHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHH----HTT----CCCS
T ss_pred HHHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHH----Hhc----CcCC
Confidence 1 11 13321 1335689999999999999999999999999983 444 4555
Q ss_pred hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226 (226)
Q Consensus 179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~ 226 (226)
|+.++++|+ +. |||||+|||||+.|+|||||||++|||||
T Consensus 156 ----e~~i~~~L~--t~--PdpDLlIRTsGE~RLSnFLLWQ~aYsEly 195 (225)
T 3ugs_B 156 ----EENLTQNLD--LP--LDVDLMLRVGNAKRLSNFLLWQCSYAEIY 195 (225)
T ss_dssp ----HHHHHHTSS--SC--SCCSEEEEESSCCSCTTSSTTTTTTCEEE
T ss_pred ----HHHHHHhcC--CC--CCCCEEEEeCCcccccCcchhhhhceEEE
Confidence 666778776 33 99999999999999999999999999985
No 9
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=75.00 E-value=2.9 Score=32.68 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=28.1
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 146 ASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 146 ls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
-...|.+++|.+|+++|++++.+.+++.++||
T Consensus 40 Tve~Nt~e~I~~At~ELl~eii~~N~l~~eDI 71 (148)
T 1xho_A 40 TVSDNTADEIVAETQKLLKEMAEKNGLEEDDI 71 (148)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 34689999999999999999988888988875
No 10
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=69.71 E-value=3.5 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.0
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCccch
Q 027207 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (226)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di 177 (226)
...+.+++|.+|+++|++++.+.++++++||
T Consensus 12 v~~Nt~e~I~~at~eLl~~i~~~N~l~~~dI 42 (127)
T 1dbf_A 12 VERDTEEEILQKTKQLLEKIIEENHTKPEDV 42 (127)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 4678999999999999999888888888775
No 11
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=67.52 E-value=4.2 Score=30.80 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.8
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCc-cch
Q 027207 147 SFPDGKEAVAKAANLLFMKYVKLGGSGK-IQE 177 (226)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~e~~~~~~~~~-~di 177 (226)
...|.+++|.+|+++|++++.+.+++++ +||
T Consensus 11 v~~n~~e~I~~at~eLl~~i~~~N~l~~~~di 42 (122)
T 1ufy_A 11 VEEDTPEAIHQATRELLLKMLEANGIQSYEEL 42 (122)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCChHhE
Confidence 4678999999999999999888888888 765
No 12
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=37.07 E-value=75 Score=21.72 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEE
Q 027207 80 YHIPAVIQLLQWLVDIGVKHVCLY 103 (226)
Q Consensus 80 ~~~~~l~~l~~W~~~~GI~~lslY 103 (226)
-.++.+.+++.-|..+|+..++|=
T Consensus 68 ~~y~~vv~vmd~l~~aG~~~v~l~ 91 (99)
T 2pfu_A 68 VDYETLMKVMDTLHQAGYLKIGLV 91 (99)
T ss_dssp CCHHHHHHHHHHHHHTCCCCEECT
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEE
Confidence 379999999999999999999873
No 13
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=36.07 E-value=1e+02 Score=26.18 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=39.8
Q ss_pred HHHHhcCCCCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHh
Q 027207 57 KRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120 (226)
Q Consensus 57 ~~~~~~~~k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l 120 (226)
.+..++ ..+.+||+|+-|++..+..-++.-..-|.+.|| ...|.+.... ..+++.+.+
T Consensus 19 ~~v~~l--~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~--s~~ell~~I 76 (276)
T 3ngx_A 19 GIIERS--GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDI--SMKDLLKRI 76 (276)
T ss_dssp HHHHHT--TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSC--CHHHHHHHH
T ss_pred HHHHHh--CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCC--CHHHHHHHH
Confidence 344444 455699999999986566678888899999999 5667664322 344554444
No 14
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=33.36 E-value=38 Score=24.78 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcE
Q 027207 152 KEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (226)
Q Consensus 152 r~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDL 202 (226)
-.++.+-+|+|...+ -+|++++|| ++..|++....-|.|.|
T Consensus 24 ~pev~~~Vr~LVq~L-l~~~i~~Ee---------Ft~~Lq~~lns~pqP~l 64 (105)
T 2h7b_A 24 SPEIGERVRTLVLGL-VNSTLTIEE---------FHSKLQEATNFPLRPFV 64 (105)
T ss_dssp CHHHHHHHHHHHHHH-HTSSCCHHH---------HHHHHHHHSSSSCCSSS
T ss_pred ChHHHHHHHHHHHHH-HhCCCCHHH---------HHHHHHHHhcCCCCcch
Confidence 467888999988776 466666543 45555554556677765
No 15
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=33.07 E-value=21 Score=26.58 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=31.1
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcE
Q 027207 145 FASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (226)
Q Consensus 145 lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDL 202 (226)
+.+++-+-.++.+-+|+|..++ -.|++++|+ +...|++....-|.|.|
T Consensus 32 las~~~~spev~~~Vr~LVq~L-l~~~i~~Ee---------Ft~~Lq~~lns~pqP~L 79 (114)
T 2p6v_A 32 LASSGXQSTETAANVXELVQNL-LDGXIEAED---------FTSRLYRELNSSPQPYL 79 (114)
T ss_dssp HHTSSSSCHHHHHHHHHHHHHH-HTTSSCHHH---------HHHHHHHHTTCCCCTTH
T ss_pred HHhccccChHHHHHHHHHHHHH-HHccCCHHH---------HHHHHHHHHcCCCCcch
Confidence 3344457788999999998886 556666543 44445544455677765
No 16
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=29.00 E-value=1.1e+02 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=31.5
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLY 103 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslY 103 (226)
..+.+||+|+-|++..+..-++.-..-|.+.||....+-
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~ 89 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIE 89 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456699999999986566667888899999999876543
No 17
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=26.22 E-value=1.1e+02 Score=23.43 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchh
Q 027207 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAW 218 (226)
Q Consensus 148 ~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pW 218 (226)
.++||.||=+|.|.-++- .+.|.+ . . .+.| +...+..+|..||-.++--.-.....|-|
T Consensus 51 ~~~Gr~EIW~ALraA~~~-~e~~Dl-----~--t-AQ~I---ldaAgItvp~gdL~~cYDe~G~~Y~LP~y 109 (137)
T 2ksn_A 51 AFEGRKEIWDALKAAAHA-FESNDH-----E--L-AQAI---IDGANITLPHGALTECYDELGNRYQLPVY 109 (137)
T ss_dssp TTCCCHHHHHHHHHHHHH-HHTTCH-----H--H-HHHH---HHHHSCBCSSCCSSEEEETTTEEEECCGG
T ss_pred ccCCCHHHHHHHHHHHHH-HhcCCH-----H--H-HHHH---HHHcCCcccCCcHHHHHhccCCccCCCee
Confidence 589999999999996543 344432 1 1 1212 22226678999999877432233444444
No 18
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=24.77 E-value=1.3e+02 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=29.6
Q ss_pred eEEEE-eeCCCCC---ChHHHHHHHHHHHhcCCCEEEEEecCCcc
Q 027207 69 YLAIV-IESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (226)
Q Consensus 69 HlavI-~d~~~~~---~~~~l~~l~~W~~~~GI~~lslYd~sg~l 109 (226)
+|+.+ ++.+-++ +-+-+..++.|+.+.|++.|.+....+|.
T Consensus 121 ei~~~~v~~~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~~N~ 165 (209)
T 3pzj_A 121 EIGHVNFSPALRRTRLATEAVFLLLKTAFELGYRRCEWRCDSRNA 165 (209)
T ss_dssp EEEEEEECTTTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECHHHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecCCCH
Confidence 45554 4443322 56778889999999999999999887653
No 19
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=24.46 E-value=1.2e+02 Score=18.22 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=18.5
Q ss_pred CCchhhHH--HHhhhHHHHHHHHHHHH
Q 027207 1 MDFRDTMQ--KVYSWACQIGNLGLWII 25 (226)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~~~l 25 (226)
|||+++-. .|-..+.||.-.+.+++
T Consensus 1 mdfnpseia~~v~~yi~~iaaagvgvl 27 (46)
T 1hgv_A 1 MDFNPSEVASQVTNYIQAIAAAGVGVL 27 (46)
T ss_dssp CCSCTHHHHHHHHTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 89998754 46777888877776654
No 20
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=23.38 E-value=63 Score=21.62 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhc
Q 027207 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193 (226)
Q Consensus 148 ~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~ 193 (226)
..+..++|.+|-|.+ ++ .+|-++.++....++++++.+.+...
T Consensus 5 ~~~~~eel~eAFr~f-~d--g~G~It~~eLr~~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 5 DTDTAEQVIASFRIL-AS--DKPYILAEELRRELPPDQAQYCIKRM 47 (75)
T ss_dssp CCSTHHHHHHHHHHH-TT--SCSSBCHHHHHHHSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHH-hc--CCCCcCHHHHHhcCCHHHHHHHHHhc
Confidence 346789999999998 55 67778888877789999999988863
No 21
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=23.25 E-value=1.6e+02 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 66 ~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
++.+||+|+-|++..+..-++.-..-|.+.||....+
T Consensus 36 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~ 72 (300)
T 4a26_A 36 RVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNV 72 (300)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5569999999998656677888899999999987544
No 22
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=23.02 E-value=1.5e+02 Score=22.84 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=34.0
Q ss_pred CCceEEEEEeCCCcHHHHHHHHHHHHHHH-HHcCC------CCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 027207 138 HKHITLEFASFPDGKEAVAKAANLLFMKY-VKLGG------SGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPV 209 (226)
Q Consensus 138 ~~~l~v~lls~~dGr~~Iv~a~r~l~~e~-~~~~~------~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~ 209 (226)
...+++-+++-.|-...+.|.-..+.++. .+.|- .-++|. +.+.+.+.+.+. -++.|++|.|||.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~--~~i~~~l~~a~~-----~~~~DlVittGG~ 79 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENR--YAIRAQVSAWIA-----SDDVQVVLITGGT 79 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCH--HHHHHHHHHHHH-----SSSCCEEEEESCC
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCH--HHHHHHHHHHHh-----cCCCCEEEeCCCC
Confidence 34566666665444445665554433333 23332 113332 234455655543 1258999999985
No 23
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=22.58 E-value=1.1e+02 Score=25.57 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=30.8
Q ss_pred CCCeEEEEeeCCCC----------CChHHHHHHHHHHHhcCCCEEEEEe
Q 027207 66 KLRYLAIVIESEEA----------YHIPAVIQLLQWLVDIGVKHVCLYD 104 (226)
Q Consensus 66 ~P~HlavI~d~~~~----------~~~~~l~~l~~W~~~~GI~~lslYd 104 (226)
+|..+.+|+|..+. +..+.+++++.-+.+.|| .||+|-
T Consensus 87 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GI-rVSLFI 134 (243)
T 1m5w_A 87 KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGI-QVSLFI 134 (243)
T ss_dssp CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCC-EEEEEe
Confidence 59999999997653 157888999999999999 577775
No 24
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.24 E-value=1.7e+02 Score=20.22 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcC
Q 027207 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194 (226)
Q Consensus 151 Gr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~ 194 (226)
.|++.++++....-.+++.|.+... ++|+++-+.|..+.
T Consensus 31 vKPe~A~~VE~~Li~lAq~Gqi~~k-----i~e~~L~~lL~~i~ 69 (80)
T 1eij_A 31 TRPDFVEQIELQLIQLAQMGRVRSK-----ITDEQLKELLKRVA 69 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHCCSSCCC-----CCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCCC-----cCHHHHHHHHHHHc
Confidence 4788899998877777899988542 45777877777654
No 25
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.65 E-value=2.4e+02 Score=24.03 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.6
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lsl 102 (226)
..+.+||+|+-|++..+..-++.-..-|.+.||....+
T Consensus 33 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~ 70 (286)
T 4a5o_A 33 LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAY 70 (286)
T ss_dssp CCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35569999999998656666888899999999987544
No 26
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.31 E-value=1e+02 Score=27.32 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHhcCCCEEEEEe
Q 027207 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYD 104 (226)
Q Consensus 65 k~P~HlavI~d~~~~~~~~~l~~l~~W~~~~GI~~lslYd 104 (226)
+.|++|++|-..++....+.+.+++.|..+.| +++|-
T Consensus 36 ~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~---~~V~v 72 (365)
T 3pfn_A 36 KSPKSVLVIKKMRDASLLQPFKELCTHLMEEN---MIVYV 72 (365)
T ss_dssp SCCCEEEEEECTTCGGGHHHHHHHHHHHHHTS---CEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCC---CEEEE
Confidence 45899999988777667889999999999987 45553
No 27
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=21.23 E-value=1.7e+02 Score=20.99 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=28.4
Q ss_pred EEEeeCCCCC---ChHHHHHHHHHHHhcCCCEEEEEecCCc
Q 027207 71 AIVIESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (226)
Q Consensus 71 avI~d~~~~~---~~~~l~~l~~W~~~~GI~~lslYd~sg~ 108 (226)
++.++.+-++ |-+-+..++.||.+.|+..+.++...+|
T Consensus 87 ~~~V~p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N 127 (172)
T 2j8m_A 87 SVYVRDDQRGKGLGVQLLQALIERARAQGLHVMVAAIESGN 127 (172)
T ss_dssp EEEECTTCTTSSHHHHHHHHHHHHHHHTTCCEEEEEEETTC
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCccEEEEEEcCCC
Confidence 4556555332 5667788999999999999999987665
No 28
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=20.65 E-value=1.2e+02 Score=20.40 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCC--Cccchh------hhhhHHHHHHHHHhcCCCCCCCc
Q 027207 150 DGKEAVAKAANLLFMKYVKLGGS--GKIQEE------KIFTEAHMSEALRAVGCKGPEPD 201 (226)
Q Consensus 150 dGr~~Iv~a~r~l~~e~~~~~~~--~~~di~------~~l~e~~l~~~L~~~~~~~pePD 201 (226)
.-|+++++.|.+.+++- ++ +|-+-. .-+++++|.+.|.+.+...++|.
T Consensus 12 ~~Re~li~~Av~FLqdp----~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~~~p~ 67 (70)
T 2w84_A 12 LPREPLIATAVKFLQNS----RVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAADEPS 67 (70)
T ss_dssp CCCHHHHHHHHHHHCST----TGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCCCC--
T ss_pred CchHHHHHHHHHHhCCh----hhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccCCCCCCc
Confidence 34888888888765331 11 111000 12667788888887777778774
Done!