BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027209
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 124 APRNVRTSVKVSNPAGGQSNI--LF--GEEPVVKTS--------KKIHNQKFAELT-GND 170
A R++ + +++ A G+ N+ L+ G + VV + + +++ A L+ G
Sbjct: 428 ACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFLSEGMA 487
Query: 171 IFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPP 217
+F+ +PP A K ++ +LR ++G +I A E + D + PP
Sbjct: 488 VFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAPDRADIL--ISPPP 532
>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
Length = 462
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 124 APRNVRTSVKVSNPAGGQSNI--LF--GEEPVVKTS--------KKIHNQKFAELT-GND 170
A R++ + +++ A G+ N+ L+ G + VV + + +++ A L+ G
Sbjct: 325 ACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFLSEGMA 384
Query: 171 IFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPP 217
+F+ +PP A K ++ +LR ++G +I A E + D + PP
Sbjct: 385 VFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAPDRADIL--ISPPP 429
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 124 APRNVRTSVKVSNPAGGQSNI--LF--GEEPVVKTS--------KKIHNQKFAELT-GND 170
A R++ + +++ A G+ N+ L+ G + VV + + +++ A L+ G
Sbjct: 428 ACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFLSEGMA 487
Query: 171 IFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPP 217
+F+ +PP A K ++ +LR ++G +I A E + D + PP
Sbjct: 488 VFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAPDRADIL--ISPPP 532
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 171 IFKGDVPPGS--AEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKP 216
+++ ++PPG+ AE P A L S +F +KVE +D F G P
Sbjct: 69 VYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMP 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,353,750
Number of Sequences: 62578
Number of extensions: 245488
Number of successful extensions: 387
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 12
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)