BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027209
         (226 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9KD93|AROE_BACHD Shikimate dehydrogenase OS=Bacillus halodurans (strain ATCC BAA-125
           / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=aroE PE=3
           SV=1
          Length = 278

 Score = 33.5 bits (75), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 158 IHNQKFAELTGNDIFKG-DVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGV 213
           +HNQ F  L  +  +   DV P   EK +  A+  +M G N+    KV   DY   V
Sbjct: 20  MHNQMFQLLDFDGYYHAFDVEPSQLEKAVEGARALQMQGFNVTIPHKVTIMDYLDMV 76


>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
            PE=3 SV=2
          Length = 2511

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 71   SESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDM-GEPAPRNVR 129
            +E D+  ++Q +D +  E   +D +S  PE +P +  A    E  +S +  GE    +  
Sbjct: 1708 NEQDINAEQQAADPELGEGGDYDKYSEDPEFKPATRHAKEMYEEGDSVNADGEICVEDRS 1767

Query: 130  TSVKVSNPAGGQSNILF 146
              ++V  P+ G S++ +
Sbjct: 1768 APMQVEGPSSGSSDLCY 1784


>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2
          Length = 1134

 Score = 31.2 bits (69), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 61  KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESK 115
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++
Sbjct: 227 KERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEAR 281


>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3
          Length = 1140

 Score = 31.2 bits (69), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 61  KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESK 115
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++
Sbjct: 227 KERDFSMFLNLDEVFKVMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEAR 281


>sp|O72904|NPH2_FOWPN RNA helicase NPH-II OS=Fowlpox virus (strain NVSL) GN=NPH2 PE=3
           SV=1
          Length = 682

 Score = 31.2 bits (69), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 16/117 (13%)

Query: 65  LSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPA 124
           +S +L+ + D + ++ + D +F  I G  ++S   EI        ++  S +SK   E  
Sbjct: 332 MSATLEDDRD-RLQEFLPDVEFYHIEGPVLYS-IKEIY------VKNKYSYDSKAYTEEE 383

Query: 125 PRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQKFAELTGND----IFKGDVP 177
            +N+ T++    P  G   ILF    +   S+ I  +K+ E + +D    I  G +P
Sbjct: 384 KKNISTTLNWCRPRNGMCGILF----LASVSQCISYKKYLEKSNSDMDFIIIHGKIP 436


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,824,551
Number of Sequences: 539616
Number of extensions: 3268502
Number of successful extensions: 8206
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 8188
Number of HSP's gapped (non-prelim): 53
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)